[go: up one dir, main page]

WO2001061028A3 - Methods and products for peptide based dna sequence identification and analysis - Google Patents

Methods and products for peptide based dna sequence identification and analysis

Info

Publication number
WO2001061028A3
WO2001061028A3 PCT/US2001/005058 US0105058W WO0161028A3 WO 2001061028 A3 WO2001061028 A3 WO 2001061028A3 US 0105058 W US0105058 W US 0105058W WO 0161028 A3 WO0161028 A3 WO 0161028A3
Authority
WO
WIPO (PCT)
Prior art keywords
analysis
products
methods
dna sequence
sequence identification
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Ceased
Application number
PCT/US2001/005058
Other languages
French (fr)
Other versions
WO2001061028A2 (en
Inventor
Jonathan W Jarvik
Current Assignee (The listed assignees may be inaccurate. Google has not performed a legal analysis and makes no representation or warranty as to the accuracy of the list.)
SEQUEL GENETICS Inc
Original Assignee
SEQUEL GENETICS Inc
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by SEQUEL GENETICS Inc filed Critical SEQUEL GENETICS Inc
Priority to AU2001241522A priority Critical patent/AU2001241522A1/en
Publication of WO2001061028A2 publication Critical patent/WO2001061028A2/en
Anticipated expiration legal-status Critical
Publication of WO2001061028A3 publication Critical patent/WO2001061028A3/en
Ceased legal-status Critical Current

Links

Classifications

    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6869—Methods for sequencing
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q2525/00—Reactions involving modified oligonucleotides, nucleic acids, or nucleotides
    • C12Q2525/10—Modifications characterised by
    • C12Q2525/149—Modifications characterised by incorporating a coding sequence
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q2600/00—Oligonucleotides characterized by their use
    • C12Q2600/158—Expression markers

Landscapes

  • Chemical & Material Sciences (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Organic Chemistry (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Zoology (AREA)
  • Wood Science & Technology (AREA)
  • Health & Medical Sciences (AREA)
  • Engineering & Computer Science (AREA)
  • Microbiology (AREA)
  • Biochemistry (AREA)
  • Physics & Mathematics (AREA)
  • Molecular Biology (AREA)
  • Biotechnology (AREA)
  • Biophysics (AREA)
  • Analytical Chemistry (AREA)
  • Immunology (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • General Engineering & Computer Science (AREA)
  • General Health & Medical Sciences (AREA)
  • Genetics & Genomics (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
  • Peptides Or Proteins (AREA)

Abstract

A method for genetic analysis in which two or more nucleic acid samples are derived from two or more heterogeneous biological samples, with expression and assessment of the corresponding peptides. The assessment of the peptides focuses on at least one physical property of the polypeptides to enable determination of the sequences. Additional features of certain embodiments of the invention include, without limitation, variable primer lengths and missense and nonsense suppression.
PCT/US2001/005058 2000-02-16 2001-02-16 Methods and products for peptide based dna sequence identification and analysis Ceased WO2001061028A2 (en)

Priority Applications (1)

Application Number Priority Date Filing Date Title
AU2001241522A AU2001241522A1 (en) 2000-02-16 2001-02-16 Methods and products for peptide based dna sequence identification and analysis

Applications Claiming Priority (4)

Application Number Priority Date Filing Date Title
US18281600P 2000-02-16 2000-02-16
US60/182,816 2000-02-16
US18931000P 2000-03-14 2000-03-14
US60/189,310 2000-03-14

Publications (2)

Publication Number Publication Date
WO2001061028A2 WO2001061028A2 (en) 2001-08-23
WO2001061028A3 true WO2001061028A3 (en) 2009-06-11

Family

ID=26878448

Family Applications (1)

Application Number Title Priority Date Filing Date
PCT/US2001/005058 Ceased WO2001061028A2 (en) 2000-02-16 2001-02-16 Methods and products for peptide based dna sequence identification and analysis

Country Status (2)

Country Link
AU (1) AU2001241522A1 (en)
WO (1) WO2001061028A2 (en)

Families Citing this family (2)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
EP1910556A4 (en) 2004-07-20 2010-01-20 Conexio 4 Pty Ltd Method and apparatus for analysing nucleic acid sequence
EP2017622A1 (en) * 2007-07-19 2009-01-21 DKFZ Deutsches Krebsforschungszentrum, Stiftung des Öffentlichen Rechts Method for determining the concentration of a molecule

Citations (2)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
WO1999014228A1 (en) * 1997-09-17 1999-03-25 Affymetrix, Inc. Genetic compositions and methods
WO2000018906A2 (en) * 1998-09-29 2000-04-06 Maxygen, Inc. Shuffling of codon altered genes

Patent Citations (2)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
WO1999014228A1 (en) * 1997-09-17 1999-03-25 Affymetrix, Inc. Genetic compositions and methods
WO2000018906A2 (en) * 1998-09-29 2000-04-06 Maxygen, Inc. Shuffling of codon altered genes

Non-Patent Citations (1)

* Cited by examiner, † Cited by third party
Title
BARTON G.J.: "Protein multiple sequence alignment and flexible pattern matching", METHODS IN ENZYMOLOGY, vol. 183, 1990, pages 403 - 428, XP002940391 *

Also Published As

Publication number Publication date
AU2001241522A1 (en) 2001-08-27
AU2001241522A8 (en) 2009-07-30
WO2001061028A2 (en) 2001-08-23

Similar Documents

Publication Publication Date Title
AU3064200A (en) A method of dna sequencing
WO2003102239A3 (en) Met/fret based method of target nucleic acid detection whereby the donor/acceptor moieties are on complementary strands
WO2006020775A3 (en) An ultra high-throughput opti-nanopore dna readout platform
WO2002020836A3 (en) Method of sequencing dna
WO2003040395A3 (en) Universal nucleotides for nucleic acid analysis
ATE232242T1 (en) UNIVERSAL PRIMER SEQUENCE FOR MULTIPLEX DNA AMPLIFICATION
WO2003093306A3 (en) Nucleic acids and proteins from streptococcus groups a & b
WO2000052208A3 (en) Customized oligonucleotide microchips that convert multiple genetic information to simple patterns
WO1999014375A3 (en) Dna typing by mass spectrometry with polymorphic dna repeat markers
WO2001077378A3 (en) Diagnosis of diseases associated with dna adducts
WO2003014303A3 (en) Molecular interactions in cells
WO2004027024A3 (en) Isolation of genetic molecules from a complex biological construct for use in genetic expression analysis
GB2401433A (en) Methods of parallel gene cloning and analysis
WO2004083819A3 (en) Molecular forensic specimen marker
WO2001061028A3 (en) Methods and products for peptide based dna sequence identification and analysis
WO2009086125A3 (en) Affinity tag nucleic acid and protein compositions, and processes for using same
WO2003020887A3 (en) Gene identification
WO2002057481A3 (en) Repeat-free probes for molecular cytogenetics
WO2003093434A3 (en) Nanoarchaeum nucleic acid molecule
WO2001049886A8 (en) Method of analyzing a nucleic acid
WO2004000995A3 (en) Methods, probes, and accessory molecules for detecting single nucleotide polymorphisms
EP1749893A3 (en) Nucleic acid primers of acidophilic bacterium and method of identifying acidophilic bacterium
EP1323835A3 (en) Method for determining biospecies contained in test specimen and kit used for the same
WO1999015644A3 (en) Method for the identification of essential genes and therapeutic targets
EP1662006A4 (en) Partially double stranded nucleic acid molecule

Legal Events

Date Code Title Description
AK Designated states

Kind code of ref document: A2

Designated state(s): AE AG AL AM AT AT AU AZ BA BB BG BR BY BZ CA CH CN CR CU CZ CZ DE DE DK DK DM DZ EE EE ES FI FI GB GD GE GH GM HR HU ID IL IN IS JP KE KG KP KR KZ LC LK LR LS LT LU LV MA MD MG MK MN MW MX MZ NO NZ PL PT RO RU SD SE SG SI SK SK SL TJ TM TR TT TZ UA UG UZ VN YU ZA ZW

AL Designated countries for regional patents

Kind code of ref document: A2

Designated state(s): GH GM KE LS MW MZ SD SL SZ TZ UG ZW AM AZ BY KG KZ MD RU TJ TM AT BE CH CY DE DK ES FI FR GB GR IE IT LU MC NL PT SE TR BF BJ CF CG CI CM GA GN GW ML MR NE SN TD TG

121 Ep: the epo has been informed by wipo that ep was designated in this application
DFPE Request for preliminary examination filed prior to expiration of 19th month from priority date (pct application filed before 20040101)
NENP Non-entry into the national phase

Ref country code: DE

REG Reference to national code

Ref country code: DE

Ref legal event code: 8642

Ref country code: DE

Ref legal event code: 8642

122 Ep: pct application non-entry in european phase
NENP Non-entry into the national phase

Ref country code: JP