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WO2000061545A1 - Methods for solid phase combinatorial synthesis of integrin inhibitors - Google Patents

Methods for solid phase combinatorial synthesis of integrin inhibitors Download PDF

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Publication number
WO2000061545A1
WO2000061545A1 PCT/US2000/010027 US0010027W WO0061545A1 WO 2000061545 A1 WO2000061545 A1 WO 2000061545A1 US 0010027 W US0010027 W US 0010027W WO 0061545 A1 WO0061545 A1 WO 0061545A1
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carbon atoms
formula
compound
optionally substituted
produce
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Ariamala Gopalsamy
Hui Yu Yang
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Wyeth LLC
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American Home Products Corp
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    • C07D295/00Heterocyclic compounds containing polymethylene-imine rings with at least five ring members, 3-azabicyclo [3.2.2] nonane, piperazine, morpholine or thiomorpholine rings, having only hydrogen atoms directly attached to the ring carbon atoms
    • C07D295/04Heterocyclic compounds containing polymethylene-imine rings with at least five ring members, 3-azabicyclo [3.2.2] nonane, piperazine, morpholine or thiomorpholine rings, having only hydrogen atoms directly attached to the ring carbon atoms with substituted hydrocarbon radicals attached to ring nitrogen atoms
    • C07D295/14Heterocyclic compounds containing polymethylene-imine rings with at least five ring members, 3-azabicyclo [3.2.2] nonane, piperazine, morpholine or thiomorpholine rings, having only hydrogen atoms directly attached to the ring carbon atoms with substituted hydrocarbon radicals attached to ring nitrogen atoms substituted by carbon atoms having three bonds to hetero atoms with at the most one bond to halogen, e.g. ester or nitrile radicals
    • C07D295/145Heterocyclic compounds containing polymethylene-imine rings with at least five ring members, 3-azabicyclo [3.2.2] nonane, piperazine, morpholine or thiomorpholine rings, having only hydrogen atoms directly attached to the ring carbon atoms with substituted hydrocarbon radicals attached to ring nitrogen atoms substituted by carbon atoms having three bonds to hetero atoms with at the most one bond to halogen, e.g. ester or nitrile radicals with the ring nitrogen atoms and the carbon atoms with three bonds to hetero atoms attached to the same carbon chain, which is not interrupted by carbocyclic rings
    • C07D295/15Heterocyclic compounds containing polymethylene-imine rings with at least five ring members, 3-azabicyclo [3.2.2] nonane, piperazine, morpholine or thiomorpholine rings, having only hydrogen atoms directly attached to the ring carbon atoms with substituted hydrocarbon radicals attached to ring nitrogen atoms substituted by carbon atoms having three bonds to hetero atoms with at the most one bond to halogen, e.g. ester or nitrile radicals with the ring nitrogen atoms and the carbon atoms with three bonds to hetero atoms attached to the same carbon chain, which is not interrupted by carbocyclic rings to an acyclic saturated chain
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    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
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    • C07CACYCLIC OR CARBOCYCLIC COMPOUNDS
    • C07C235/00Carboxylic acid amides, the carbon skeleton of the acid part being further substituted by oxygen atoms
    • C07C235/42Carboxylic acid amides, the carbon skeleton of the acid part being further substituted by oxygen atoms having carbon atoms of carboxamide groups bound to carbon atoms of six-membered aromatic rings and singly-bound oxygen atoms bound to the same carbon skeleton
    • C07C235/44Carboxylic acid amides, the carbon skeleton of the acid part being further substituted by oxygen atoms having carbon atoms of carboxamide groups bound to carbon atoms of six-membered aromatic rings and singly-bound oxygen atoms bound to the same carbon skeleton with carbon atoms of carboxamide groups and singly-bound oxygen atoms bound to carbon atoms of the same non-condensed six-membered aromatic ring
    • C07C235/58Carboxylic acid amides, the carbon skeleton of the acid part being further substituted by oxygen atoms having carbon atoms of carboxamide groups bound to carbon atoms of six-membered aromatic rings and singly-bound oxygen atoms bound to the same carbon skeleton with carbon atoms of carboxamide groups and singly-bound oxygen atoms bound to carbon atoms of the same non-condensed six-membered aromatic ring with carbon atoms of carboxamide groups and singly-bound oxygen atoms, bound in ortho-position to carbon atoms of the same non-condensed six-membered aromatic ring
    • C07C235/60Carboxylic acid amides, the carbon skeleton of the acid part being further substituted by oxygen atoms having carbon atoms of carboxamide groups bound to carbon atoms of six-membered aromatic rings and singly-bound oxygen atoms bound to the same carbon skeleton with carbon atoms of carboxamide groups and singly-bound oxygen atoms bound to carbon atoms of the same non-condensed six-membered aromatic ring with carbon atoms of carboxamide groups and singly-bound oxygen atoms, bound in ortho-position to carbon atoms of the same non-condensed six-membered aromatic ring having the nitrogen atoms of the carboxamide groups bound to hydrogen atoms or to acyclic carbon atoms
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    • C07CACYCLIC OR CARBOCYCLIC COMPOUNDS
    • C07C271/00Derivatives of carbamic acids, i.e. compounds containing any of the groups, the nitrogen atom not being part of nitro or nitroso groups
    • C07C271/06Esters of carbamic acids
    • C07C271/08Esters of carbamic acids having oxygen atoms of carbamate groups bound to acyclic carbon atoms
    • C07C271/10Esters of carbamic acids having oxygen atoms of carbamate groups bound to acyclic carbon atoms with the nitrogen atoms of the carbamate groups bound to hydrogen atoms or to acyclic carbon atoms
    • C07C271/22Esters of carbamic acids having oxygen atoms of carbamate groups bound to acyclic carbon atoms with the nitrogen atoms of the carbamate groups bound to hydrogen atoms or to acyclic carbon atoms to carbon atoms of hydrocarbon radicals substituted by carboxyl groups
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    • C07C275/00Derivatives of urea, i.e. compounds containing any of the groups, the nitrogen atoms not being part of nitro or nitroso groups
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    • C07C279/00Derivatives of guanidine, i.e. compounds containing the group, the singly-bound nitrogen atoms not being part of nitro or nitroso groups
    • C07C279/04Derivatives of guanidine, i.e. compounds containing the group, the singly-bound nitrogen atoms not being part of nitro or nitroso groups having nitrogen atoms of guanidine groups bound to acyclic carbon atoms of a carbon skeleton
    • C07C279/08Derivatives of guanidine, i.e. compounds containing the group, the singly-bound nitrogen atoms not being part of nitro or nitroso groups having nitrogen atoms of guanidine groups bound to acyclic carbon atoms of a carbon skeleton being further substituted by singly-bound oxygen atoms
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    • C07BGENERAL METHODS OF ORGANIC CHEMISTRY; APPARATUS THEREFOR
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    • C07C2603/58Ring systems containing bridged rings containing three rings
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    • C40COMBINATORIAL TECHNOLOGY
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    • C40B40/00Libraries per se, e.g. arrays, mixtures

Definitions

  • the present invention relates to integrin inhibitors useful for their ability to antagonize/block biological processes mediated by ⁇ v ⁇ 3 and related integrin receptors, to combinatorial and solid phase methods for preparing libraries of compounds, and utilization of libraries of the compounds for drug discovery.
  • the present invention further provides pharmaceutical compositions for administration to mammals, including man, and methods for their use in the treatment of various disorders including, but not limited to, cancer (tumor metathesis, tumorgenesis/tumor growth), angiogenesis (as in cancer, diabetic retinopathy, rheumatoid arthritis), restenosis (following balloon angioplasty or stent implantation), inflammation (as in rheumatoid arthritis, psoriasis), bone diseases (osteopenia induced by bone metastases, immobilization and glucocortocoid treatment, periodontal disease, hyperparathyroidism and rheumatoid arthritis), and as antiviral agents.
  • cancer tumor metathesis, tumorgenesis/tumor growth
  • angiogenesis as in cancer, diabetic retinopathy, rheumatoid arthritis
  • restenosis followeding balloon angioplasty or stent implantation
  • inflammation as in rheumatoid arthritis, psorias
  • the integrin ⁇ v ⁇ 3 has been shown to mediate the invasion of cancerous melanoma cells into healthy tissue and to protect these cells against natural cell death cycle (apoptosis).
  • Vitronectin receptor( ⁇ y ⁇ 3 ) antagonists have been shown to inhibit the growth of various solid tumors of human origin. More recently, ⁇ v ⁇ 3 has been shown to be involved in liver metastasis.
  • angiogenesis is an important and natural process in growth and wound healing, it is now appreciated that a variety of clinically relevant conditions are pathologically related to these processes, and that the integrin ⁇ v ⁇ 3 is involved.
  • ⁇ v ⁇ 3 was shown to be expressed on human wound tissue but not on normal skin and is preferentially expressed on angiogenic blood vessels, such as those feeding a growing/invading tumor. It has also been shown that antagonists of ⁇ v ⁇ 3 promote tumor regression by inducing apoptosis of the tumor cells. This process of neovascularization (new blood vessel growth, angiogenesis), which is critical for tumor growth and metastasis, is also an important event in occular tissue, leading to diabetic retinopathy, glaucoma and blindness and in joints, promoting rheumatoid arthritis.
  • angiogenesis new blood vessel growth, angiogenesis
  • v ⁇ 3 has been shown to play a pivotal role in the proliferation and migration of smooth muscle and vascular endothetial cells, a pathological process leading to restenosis after balloon angioplastly (Choi et al., J. Vase. Surgery, 1994, 19, 125-134; Matsumo et al., Circulation, 1994, 90, 2203-2206). At least one type of virus (adenovirus) has been shown to utilize oc v ⁇ 3 for entering host cells (White et al., Current Biology, 1993, 596-599).
  • ⁇ v ⁇ 3 Various bone diseases involve bone resorption-the dissolution of bone matter, which is mediated by only one known class of cells, the osteoclasts. When activated for resorption, these motile cells initially bind to bone, a process well known to be mediated by ⁇ v ⁇ 3 (Davies et al., J. Cell. Biol., 1989, 109, 1817-1826; Helfrich et al., J Bone Mineral Res., 1992, 7, 335-343). It is also well known that blockade of ⁇ v ⁇ 3 with antibodies or RGD containing peptides block osteoclast cell adhesion and bone resorption in vitro (Horton et al., Exp. Cell Res.
  • Combinatorial chemistry is becoming an important tool for drug discovery and lead optimization (Borman, S. Chemical and Engineering News 1997, 75 (8), 43- 63).
  • a combinatorial synthesis requires that at least two components of the product molecules be independently variable, so that all of the combinations of these components can be prepared.
  • a synthesis with three independently variable components is preferable since greater diversity in structure can be produced in the resultant library.
  • integrin inhibitors are RGD mimics and they use a ⁇ - amino acid like substituted 2,3-diaminopropionic acid as the carboxylic acid terminus. While a cyclic or acyclic guanidino moiety is preferred for the basic end of the molecule, substituted ureas and amidines are used as well.
  • the central scaffold, connecting these two pieces, itself can be varied widely. By developing a convenient route to appropriately protected fragments and a mild solid phase synthesis that incorporates all the three components in an independent fashion, it is possible to prepare combinatorial libraries of this important class of integrin inhibitors. A solid-phase synthesis of integrin antagonist has been reported recently
  • R, and R-. independently are optionally substituted alkyl of 1-8 carbon atoms, optionally substituted alkenyl of 2-8 carbon atoms, optionally substituted alkynyl of 2-8 carbon atoms, optionally substituted cycloalkyl of 3-12 carbon atoms, optionally substituted aryl, optionally substituted aralkyl of 6-10 carbon atoms, optionally substituted aralkenyl of 6-10 carbon atoms, optionally substituted heterocycloalkyl of 5-10 members consisting of carbon atoms and from 1-3 heteroatoms selected from N, S and O, optionally substituted heterocycloalkyl-alkyl where the heterocycloalkyl has 5-10 members consisting of carbon atoms and from 1-3 heteroatoms selected from N, S and O, and the alkyl has 1-8 carbon atoms, optionally substituted heteroalkyl-alkenyl where the heteroalkyl has 5-10 members consisting of carbon atoms and from 1-3 heteroatoms selected from N
  • R 3 is H, optionally substituted alkyl of 1-6 carbon atoms, optionally substituted aralkoxy of 1-6 carbon atoms;
  • X is NHCOO, NHCO, NHCONH, NHSO 2 ;
  • G may preferably be pyrimidinyl, guanidine, pyridyl-urea, benzyl-urea, azepinyl, imidazolinyl or tetrahydropyrimidinyl.
  • R. may be methyl, ethyl, n-propyl, i-propyl, allyl, homoallyl, propargyl, pentyl, n-hexyl, octyl, neopentyl, trichloroethyl, n-butyl, i-butyl, butynyl, phenyl, methylphenyl, dimethylphenyl, halophenyl, methoxyphenyl, acetylphenyl, biphenyl, naphthyl, benzyl, phenethyl, cyclohexyl, cyclohexylmethyl, trimethylcyclopropyl, phenylcyclopropyl, adamantyl, adamantylmethyl, cinnamic, pyridyl, or dimethylfuranyl.
  • Alkyl whether used alone or as part of a group such as “alkoxy”, means an optionally substituted branched or straight chain having from 1 to 8 carbon atoms.
  • exemplary alkyl groups include methyl, ethyl, propyl, isopropyl, butyl, isobutyl, t- butyl, pentyl and hexyl.
  • Lower alkyl refers to alkyl having from 1 to 6 carbon atoms.
  • Alkyl groups may be substituted with one or more substituents selected from halogen, lower alkyl, lower alkoxy, lower alkylthio, amino, nitro, cyano, carboxy, alkylamino, perhaloalkyl, hydroxy, oxy, phenyl, phenylalkyl, or naphthyl.
  • substituents selected from halogen, lower alkyl, lower alkoxy, lower alkylthio, amino, nitro, cyano, carboxy, alkylamino, perhaloalkyl, hydroxy, oxy, phenyl, phenylalkyl, or naphthyl.
  • a substituted alkyl group is trichloroethyl.
  • Cycloalkyl refers to optionally substituted mono or polycyclic alkyl group of 3-12 carbon atoms.
  • exemplary cycloalkyl groups include cyclopropyl, cyclohexyl and adamantyl. Cycloalkyl groups may be substituted by one or more substituents e.g. those described above in relation to the optionally substituted alkyl group. Preferred substituents include aromatic groups such as phenyl and alkyl groups such as methyl. Examples of substituted cycloalkyl groups include trimethylcyclopropyl and phenylcyclopropyl.
  • Aryl whether used alone or as part of a group such as “aralkyl”, means optionally substituted mono or bicyclic aromatic ring having from 5 to 10 carbon atoms.
  • exemplary aryl groups include phenyl and naphthyl.
  • the aryl may be substituted with one or more substituents.
  • Substituents include halogen, lower alkyl, lower alkoxy, lower alkylthio, amino, nitro, cyano, carboxy, carboxyalkyl, alkanoyl, alkylamino, perhaloalkyl, hydroxy, oxy, phenyl, phenylalkyl, or naphthyl.
  • aryl group is phenyl which may be denoted as Ph in some instances.
  • substituted aryls include methylphenyl, dimethylphenyl, halophenyl, methoxyphenyl, acetylphenyl and biphenyl.
  • Heterocycloalkyl whether used alone or as part of a group such as “heterocycloalkyl-alkyr' means an optionally substituted stable 5 to 10 membered mono or bicyclic ring of carbon atoms and from 1 to 3 heteroatoms selected from N, O and S.
  • heterocycloalkyls include pyrazinyl, pyrazolyl, tetrazolyl, furanyl, thienyl, pyridyl, imidazolyl, pyrimidinyl, tetrahydropyrimidinyl, isoxazolyl, thiazolyl, isothiazolyl, quinolinyl, indolyl, isoquinolinyl, oxazolyl and oxadiazolyl.
  • Preferred heterocycloalkyl groups include pyrimidinyl, tetrahydropyrimidinyl, pyridyl, azepinyl, and imidazolyl.
  • heterocycloalkyls include pyridin-2yl, and tetrahydropyrimidine.
  • the heterocycloalkyl may also be substituted with one or more substituents.
  • substituents include halogen, lower alkyl, lower alkoxy, lower alkylthio, amino, nitro, cyano, carboxy, carboxyalkyl, alkanoyl, alkylamino, perhaloalkyl, hydroxy, oxy, phenyl, phenylalkyl or naphthyl.
  • Preferred substituents include amino and oxy.
  • Preferred substituted heterocyloalkyls include 6 aminopyridin-2yl and tetrahydropyrirnid-4-one.
  • Alkyl means an optionally substituted aryl-alkyl group in which the aryl, alkyl and the optional substitutents are as previously described.
  • exemplary aralkyl groups include benzyl and phenethyl. Used in this context, the alkyl group may include one or more double bonds.
  • Heterocycloa-lkyl-alkyl means an optionally substituted heterocycloalkyl-alkyl group in which the heterocycloalkyl, alkyl and optional substitutents are as previously described. Used in this context the alkyl group may include one or more double bonds.
  • Exemplary heterocycloalkyl-alkyls include pyridylmethyl, pyridylethyl, thienylethyl, thienylmethyl, indolylmethyl, and furylmethyl.
  • Alkoxy means an optionally substituted alkyl-O group in which the alkyl group is as previously described.
  • exemplary alkoxy groups include methoxy, ethoxy, n-propoxy, i-propoxy, n-butoxy, and t-butoxy.
  • Alkoxy means an optionally substituted aryl-alkoxy group in which aryl and alkoxy are as previously described.
  • Halogen includes fluorine, chlorine, iodine and bromine.
  • Prodrug means a compound which is convertible in vivo by metabolic means (e.g. by hydrolysis) to a compound of Formula I.
  • Compounds of the present invention include all crystalline forms, pharmaceutically acceptable salts, enantiomers, racemic mixtures, and diasteromeric mixtures thereof.
  • Some preferred compounds of the present invention include:
  • ?N may be prepared in accordance with the steps of:
  • P is preferably a polystyrene resin cross-linked with divinylbenzene and functionalized with a linker such as a hydroxymethylphenoxy group, which is more preferably Wang's resin; b) deblocking the fluorenylmethyloxy carbonyl group of said compound of formula (1) with piperidine to produce a compound of formula (2);
  • compounds of Formula I may be prepared in accordance with steps a) through f) to produce compound of formula (7).
  • This aspect of the methods of the invention further comprises the steps of : i) reacting said compound of formula (7) with isocyanates or with p-nitrophenyl chloroformate, followed by amine to produce a compound of formula (12)
  • a solid support P which is preferably a resin of polystyrene cross- linked with divinylbenzene and with a linker such as 4-hydroxymethylphenoxy, most preferably Wang's resin as described below, in the presence of a coupling reagent such as 2-(lH-benzotriazole-l- yl)-l,l,3,3-tetramethyluronium hexafluorophosphate (HBTU)/ N-hydroxybenzo- triazole (HOBT) to produce a compound of formula (1).
  • the compound of formula (1) is deprotected using 20% piperidine in DMF to yield a compound of formula (2), which provides the first handle for diversification.
  • a compound of formula (2) is reacted with either chloroformates or isocyantes or carboxylic acid chlorides or sulfonyl chlorides in a solvent like dichloromethane or tetrahydrofuran to yield a compound of formula (3).
  • a carboxylic acid is coupled directly with the compound of formula (2) in the presence of a coupling reagent like 1 ,3-diisopropylcarbodiimide (DIC) to produce the compound of formula (3).
  • DIC 1 ,3-diisopropylcarbodiimide
  • a compound of formula (3) is treated with 2% hydrazine to deprotect the (4,4-dimethyl-2,6-dioxocyclohex-l-ylidene)ethyl (dde) protecting group to yield a compound of formula (4), which provides a second handle for diversification.
  • a compound of formula (4) is reacted with a Fmoc protected amino carboxylic acid of formula (5) in the presence of a coupling reagent like DIC to produce the compound of formula (6).
  • the compound of formula (6) is deprotected using 20% piperidine in DMF to yield a compound of formula (7), which provides the third handle for diversification.
  • the compound of formula (7) is reacted with N,N-bis-Boc-S-ethylthiourea or 2-(3,5-dimethylpyrazolyl)-4,5-dihydroimidazole or 2-bromopyrimidine or l-methoxy-2-azacylohept-l-ene to give a compound of formula (12).
  • the compound of formula (7) is reacted with p- nitrophenyl chloroformate and the resulting carbamate was reacted with amines to give ureas of formula (12).
  • the compounds of the present invention are integrin inhibitors useful for their ability to antagonize biological processes mediated by ⁇ v ⁇ 3 and related integrin receptors including, but not limited to, cancer (tumor metastatis, tumorgensis, tumor growth), angiogenesis (as in cancer, diabetic retinopathy, rheumatoid arthritis), restenosis (following balloon angioplasty or stent implantation), inflammation (as in rheumatoid arthritis, psoriasis), bone diseases (osteopenia induced by bone metastases, immobilization and glucocortocoid treatment, periodontal disease, hyperparathyroidism and rheumatoid arthritis), and as antiviral agents.
  • cancer tumor metastatis, tumorgensis, tumor growth
  • angiogenesis as in cancer, diabetic retinopathy, rheumatoid arthritis
  • restenosis followeding balloon angioplasty or stent implantation
  • inflammation as in rhe
  • This assay is to measure the effect of various compounds on the ⁇ - ligand interaction.
  • D-PBS Dulbecco's phosphate buffered saline
  • the cell suspension is homogenized with 2x30 seconds bursts of a Polytron homogenizer.
  • the homogenate is centrifuged at 3000g for 10 minutes at 4 C.
  • the supernatant is collected, measured, and made 100 mM in NaCl and 0.2 mM in MgSO4.
  • the pellet is resuspended in 0.5 mL/flask of membrane buffer (stock membranes) and frozen at -80C. Prior to use, stock membranes are Dounce homogenized and diluted 2 ⁇ L to 1000 ⁇ L in membrane buffer. See References
  • Multiscreen-FB assay plates (Millipore MAFB NOB 50) are blocked with 150 mL of 0.1 % polyethylenimine for 2 hours at 4° C. Following incubation the wells are aspirated and washed with isotonic saline solution. Binding Assay
  • 125 ⁇ L of assay buffer is added to each well.
  • 25 ⁇ L of labeled ligand is added to each well.
  • 25 ⁇ L of unlabeled ligand is added to non-specific binding wells (NSB).
  • 25 ⁇ L of assay buffer is added to all other wells.
  • 2 ⁇ L of compound is added to appropriate sample wells, and 2 ⁇ L of DMSO is added to NSB and total binding (TB) wells.
  • 25 ⁇ L of membrane is added to each well.
  • the plates are covered and incubated at 37° C for 2 hours in a humidified incubator.
  • Wells are aspirated on a Millipore vacuum manifold, and the wells are washed with 150 ⁇ L isotonic saline solution.
  • Wells are again aspirated.
  • the plates are then dried for 1 hour in an 80° C vacuum drying oven. Plates are placed on a Millipore filter punch apparatus, and filters are placed in 12 x 75 mm polypropylene culture tubes. The samples are counted on a Packard gamma counter.
  • the individual well activity is expressed as a percentage of the specific binding; % Max, and reported as the mean + standard deviation.
  • Dose-inhibition relationships are generated for dose (X-axis) vs. % Max (Y-axis) for active compounds using a non-linear regression computer program (PS-NONLIN), and IC50 values with corresponding 95% confidence intervals are estimated from 50% of maximal attachment.
  • PS-NONLIN non-linear regression computer program
  • Arginine-Glycine-Aspartic Acid (RGD)-containing peptides were assessed for the ability to inhibit a v b 3 binding and the corresponding IC50 values with 95% confidence intervals were generated; peptide structures are given by the standard single letter designation for amino acids. Values obtained compared favorably with adhesion assay results.
  • This assay is to measure the effect of various compounds on the RGD-dependent attachment of cells to osteopontin mediated by the ⁇ v ⁇ 3 integrin.
  • Cell Suspension Media The cells are suspended for assay in the tissue culture media used for normal culture maintenance buffered with 25 mM HEPES (pH 7.4) without serum supplementation.
  • Compound Dilution Media The stock compounds are dissolved in an appropriate vehicle (typically DMSO) and subsequently diluted in the tissue culture media used for normal culture maintenance buffered with 25 mM HEPES (pH 7.4) supplemented with 0.2% BSA (no serum); final vehicle concentration is ⁇ 0.5%. Plate Preparation
  • Human recombinant osteopontin (Structural Biology Group, W-AR) is diluted to an appropriate concentration in Dulbecco's phosphate buffered saline (D-PBS) without calcium or magnesium, pH 7.1. 100 mL of this solution is incubated in the wells of PRO-BIND assay plates (Falcon 3915) for 2 hours at 37° C. Following incubation the wells are aspirated and washed once with D-PBS; plates can either be used immediately or stored for up to 1 week at 4° C. Prior to assay, the wells are blocked with 1% bovine serum albumin (BSA) in cell suspension media for 1 hour at 37° C. Following the blocking period, wells are aspirated and washed once with D- PBS.
  • D-PBS Dulbecco's phosphate buffered saline
  • BSA bovine serum albumin
  • Cell Suspension ⁇ v ⁇ 3-expressing cell lines are maintained by standard tissue culture techniques.
  • the cell monolayer is washed three times with D-PBS, and the cells are harvested with 0.05% trypsin/0.53 mM EDTA (GIBCO).
  • the cells are pelleted by low-speed centrifugation and washed three times with 0.5 mg/mL trypsin inhibitor in D-PBS (Sigma).
  • the final cell pellet is resuspended in cell suspension media at a concentration of 10 ⁇ cells/mL.
  • Incubation 100 mL of diluted test compound is added to osteopontin-coated wells (in triplicate) followed by 100 mL of cell suspension; background cell attachment is determined in uncoated wells.
  • the plate is incubated at 25° C in a humidified air atmosphere for 1.5 hours. Following the incubation period, the wells are gently aspirated and washed once with D-PBS.
  • MTT dye conversion assay Promega
  • MTT dye is diluted in cell suspension media (15:85) and 100 mL is added to each well.
  • the assay plates are incubated for 4 hours at 37° C in a humidified 5% CO2/95% air atmosphere, followed by the addition of 100 mL stopping/solubilization solution.
  • the assay plates are covered and incubated at 37° C in a humidified air atmosphere overnight. After the solubilization period, the optical density of the wells is measured at a test wavelength of 570 nM with a reference measurement taken simultaneously at 630 nM. Analysis of Results:
  • the individual well optical density is expressed as a percentage of the maximal attachment (% Max) wells minus background attachment, and reported as the mean + standard deviation.
  • Dose-inhibition relationships are generated for dose (X-axis) vs. % Max (Y-axis) for active compounds using a non-linear regression computer program (PS-NONLIN), and IC50 values with corresponding 95% confidence intervals are estimated from 50% of maximal attachment.
  • Arginine-Glycine-Aspartic Acid (RGD)-containing peptides, and monoclonal antibodies were assessed for the ability to inhibit osteopontin- ⁇ y ⁇ 3 attachment and the corresponding IC50 values with 95% confidence intervals were generated in the SK-MEL-24 human malignant melanoma cell line; peptide structures are given by the standard single letter designation for amino acids:
  • GPenGRGDSPCA 0.58 mM (0.51 TO 0.67) n-Me-GRGDSP 4.0 mM (3.4 TO 4.7) GRGDSP 4.1 mM (3.4 TO 4.9) GRGDTP 5.2 mM (3.4 TO 4.9)
  • the assay is conducted as described in Murrills and Dempster (1990) Bone 11:333- 344. Briefly, 4 x 4 x 0.2mm slices of devitalized bovine cortical bone are numbered, placed in the wells of 96- well culture plates and wetted with lOOul of Medium 199 containing Hanks salts, lOmM HEPES, pH 7.0 (Medium 199/Hanks). Bone cell suspensions containing osteoclasts are prepared by mincing the long bones of neonatal rats (Sprague-Dawley , 4-6 days old) in Medium 199/Hanks. IOOUL of the suspension are then plated onto each slice and incubated 30 minutes to allow osteoclasts to adhere.
  • the slices are rinsed to remove non-adherent cells and incubated 24h in Medium 199 containing Earle's salts, lOmM HEPES and 0.7g/L NaHCO3, which equilibrates at pH 6.9 in a 5% CO2 atmosphere. At this pH the adherent osteoclasts excavate an adequate number of resorption pits for assay purposes.
  • Slices are fixed in 2.5% glutaraldehyde and osteoclasts counted following tartrate-resistant acid phosphatase staining. In experiments in which osteoclast numbers are significantly reduced in a particular treatment, a check is made for nonspecific cytotoxicity by counting the number of contaminant fibroblast-like cells following toluidine staining. All cells are stripped from the slice by sonication on 0.25M NH4OH and the resorption pits formed by the osteoclasts during the experiment stained with toluidine blue. Resorption pits are quantified by manually counting.
  • the experiments are conducted according to a block design with osteoclasts from each animal exposed to each treatment. Three replicate slices are used per treatment per animal, such that a total of 96 slices are examined for an experiment involving four animals and eight treatments (including control). Several parameters are recorded on a "per slice” basis: number of pits, number of osteoclasts, number of pits per osteoclast, number of fibroblast-like bone cells. SAS or JMP statistical software are used for statistical analysis. If analysis of variance reveals significant effects in the experiment, those treatments differing significantly from control are identified using Dunnett's test. IC50S are calculated for active compounds using dose-response curves.
  • Osteoclasts are responsible for the bone loss that occurs in the onset of osteoporosis and anti-resorptive drugs directed against the osteoclast are a requirement for patients losing bone.
  • Calcitonin and bisphosphonates both used as anti-resorptives in the clinic, show significant osteoclast inhibitory activity in this assay. Hence it is a reasonable assay in which to identify novel anti-resorptives.
  • Dpr(Dde)-OH) (Nova Biochem) (4.513g; 9.2 mmol) in DMF (30mL) was treated with N-hydroxybenzotriazole (HOBT) (1.242g; 9.2 mmol), 2-(lH-benzotriazole-l- yl)-l,l,3,3-tetramethyluronium hexafluorophosphate (HBTU) (3.487g; 9.2 mmol) and N,N-diisopropylethylamine (DIE A) (3.2 mL; 18.4 mmol) and added to the resin. The mixture was shaken at room temperature for 8 h.
  • HOBT N-hydroxybenzotriazole
  • HBTU 2-(lH-benzotriazole-l- yl)-l,l,3,3-tetramethyluronium hexafluorophosphate
  • DIE A N,N-diisopropylethylamine
  • the resin prepared according to example 1 (7.085 g) in DMF was treated with 20% piperidine in DMF (40mL) for 10 min and filtered. Another 40mL portion of 20% piperidine in DMF was added to the resin and shaken at room temperature for 20 min. The resin was filtered and washed with DMF (3X40mL), MeOH (3X40mL) and DCM (3X 40mL). The resin was dried in vacuo.
  • reaction vessels were shaken at room temperature using orbital shaker (Thermolyne RotoMix Type 50800) for 18 h.
  • the mixtures were filtered and the resin in each vessel was washed with dichloromethane (4 x 4 mL), methanol (4 x mL) and dichloromethane (2 x 4 mL).
  • the resins were dried under vacuum.
  • a sample of resin from each vessel was removed and subjected to Kaiser Ninhydrin test. If the test showed the presence of free amine (resin turned blue) the coupling described above was repeated.
  • Step 1 Methyl 4-[2-N-(t-butoxycarbonyl)ethoxy]-2-hydroxy benzoate (13)
  • Methyl 2, 4-dihydroxy benzoate (14.5g, Aldrich), 2-(N-t-butoxycarbonyl)- ethanol (13.9g, -Aldrich) and triphenyl phosphine (22.6g, Aldrich) were combined in 350 mL of THF and cooled in ice under N 2 atmosphere.
  • Diethyl diazodicarboxylate (DEAD) (15g, Aldrich) was added, the ice bath removed and the reaction mixture allowed to stir at ambient temperature for 15h.
  • Ester (13) (7.2g) from Step 1 was treated with 5eq. KOH (dissolved in minimum amount of water and equal volume of 1, 4-dioxane) at room temperature until TLC indicated complete absence of starting material (3-12h).
  • the crude product (5.34g) was recrystallized from ether, then dissolved in 1, 4-dioxane and treated with an excess of anhydrous HCI (4M in dioxane, -Aldrich).
  • the Amino acid (14) (1.864g; 8 mmol) from Step 2 was dissolved in 1:1 acetone - water (50 mL) containing Sodium Carbonate (1.696g; 16 mmol). To the solution was added Fmoc-Osu (2.696 g; 8 mmol) in acetone (25 mL) dropwise at room temperature. The solution was stirred at room temperature for 18 h. The reaction mixture was concentrated and the residue was dissolved in water and extracted with ether (2x50 mL). The aqueous layer was cooled in an ice bath and acidified with 6N HCI to pH 3. The solid obtained was filtered and washed with water and dried under vacuo (3.22g).
  • Example 7 was transferred to 14 new reaction vessels and the resin was swollen in DMF. To each vessel was added a solution of 2-(3,5-dimethylpyrazolyl)-4,5- dihydroimidazole hydrobromide (123 mg; 0.5 mmole) in DMF (1.5 mL) followed by diisopropylamine (0.15 mL; 1 mmole). The reaction vessels were shaken at 60 °C for 18h. The mixtures were filtered and the resin in each vessel was washed with dimethylformamide (4 x 4 mL), methanol (4 x mL) and dichloromethane (4 x 4 mL). The resins were dried under vacuum.
  • the resin in each vessel was suspended in DMF (1.5 mL) and benzyl amine (54 mg; 0.5 mmole) was added followed by triethylamine (101 mg; 1 mmole). The mixtures were filtered and the resin in each vessel was washed with dimethylformamide (4 x 4 mL), methanol (4 x mL) and dichloromethane (4 x 4 mL). The resins were dried under vacuum.
  • reaction vessels were shaken at room temperature for 16h. The mixtures were filtered and the resin in each vessel was washed with dimethylformamide (4 x 4 mL), methanol (4 x mL) and dichloromethane (4 x 4 mL). The resins were dried under vacuum. A sample of resin from each vessel was removed and subjected to Kaiser Ninhydrin test. If the test showed the presence of free amine (resin turned blue) the coupling described above was repeated.
  • the resin prepared according to the example 2 was placed in the reaction vessel (750 mg per vessel; 0.75 mmol). The resin in each vessel was swollen with DMF. A solution of appropriate carboxylic acid (1.5 mmole) in DMF was mixed with diisopropylcarbodiimide (189 mg; 1.5 mmole), hydroxybenzotriazole (202.5 mg; 1.5 mmole) and dimethylaminopyridine (18.33 mg; 0.15 mmole) and the mixture was added each reaction vessel. The reaction vessels were shaken at room temperature for 16h.
  • the compound was prepared by following the procedures detailed in examples 1-4, 6,7 and 11, but for example 6, wherein the 4-[(2-fluorenylmethyloxycarbonyl- amino)-ethoxy]-2-hydroxybenzoic acid was substituted by Fmoc-4-(2-aminoethyl)-l- carboxymethyl-quinazoline-2,4-dione (Neosystem Lab).
  • the purified product was characterized by MS: 617 (M+H); LC: 4.41 min; 98% @ 220 nm.
  • IH MNR (DMSO-d6 + D2O): d: 8.05 (dd, IH), 7.6 (t, IH), 7.2-7.4 (m, 10H), 7.0 (t, 2H) 5.0 (s, 2H), 4.7 (m, 2H), 3.8-4.0 (m, 4H), 3.45 (m, IH), 3.25-3.35 (m, 4H).
  • the compounds of the present invention can be used in the form of salts derived from pharmaceutically or physiologically acceptable acids or bases.
  • These salts include, but are not limited to, salts with inorganic acids such as hydrochloric acid, sulfuric acid, nitric acid, phosphoric acid and salts with organic acids such as acetic acid, oxalic acid, succinic acid, and maleic acid.
  • Other salts include salts with alkali metals or alkaline earth metals, such as sodium, potassium, calcium or magnesium.
  • the compounds of the present invention can also be used in the form of esters at the C-terminus; carbamates, amides and the like at the N-terminus or other conventional ⁇ pro-drug!
  • Compounds of the present invention may be administered in combination with one or more pharmaceutically acceptable carriers, for example, solvents, diluents and the like.
  • Solid carriers include starch, lactose, dicalcium phosphate, microcrysta-lline cellulose, sucrose and kaolin, while liquid carriers include sterile water, polyethylene glycols, non-ionic surfactants and edible oils such as corn, peanut and sesame oils.
  • Adjuvants customarily employed in the preparation of pharmaceutical compositions may be advantageously included, such as flavoring agents, coloring agents, preserving agents, and antioxidants, for example, vitamin E, ascorbic acid, BHT and BHA.
  • formulations may contain, for example, from about 0.05 to 5% of suspending agent, syrups containing, for example, from about 10 to 50% of sugar, or elixirs containing, for example, from about 20 to 50% ethanol, and the like.
  • formulation may be, for example, sterile injectable solutions or suspensions containing from about 0.05 to 5% suspending agent in an isotonic medium.
  • Such pharmaceutical preparations may contain, for example, from about 25 to about 90% by weight of active ingredient in combination with a carrier, and more preferably between about 5% and 60% by weight of active ingredient.
  • compositions from the standpoint of ease of preparation and administration are solid compositions, particularly tablets and hard-filled or liquid-filled capsules. Oral administration of the compounds is preferred.
  • the dosage requirements can be determined by one skilled in the art and will vary with the particular composition employed, the route of administration, the severity of the symptoms presented and the particular subject being treated. However, in general, satisfactory results are obtained when compounds of the invention are administered at a daily dosage of from about 0.5 to about 500 mg/kg of animal body weight, preferably given in divided doses two to four times a day, or in a sustained release form. Preferably, the total daily dosage is from about 1 to about 100 mg, preferably about 2 to about 80 mg. Dosage forms suitable for internal use comprise from about 0.5 to 500 mg of active compound in intimate admixture with solid or liquid pharmaceutically acceptable carrier.

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Abstract

Compounds of the formula (I) are useful in the treatment of various disorders including, but not limited to, cancer (tumor metathesis, tumorgenesis/tumor growth), angiogenesis (as in cancer, diabetic retinopathy, rheumatoid arthritis), restenosis (following balloon angioplasty or stent implantation), inflammation (as in rheumatoid arthritis, psoriasis), bone diseases (osteopenia induced by bone metastases, immobilization and glucocortocoid treatment, periodontal disease, hyperparathyroidism and rheumatoid arthritis), and as antiviral agents. Novel method of making compounds of formula (I) are also provided.

Description

METHODS FOR SOLID PHASE COMBINATORIAL SYNTHESIS OF
INTEGRIN INHIBITORS
Field of Invention The present invention relates to integrin inhibitors useful for their ability to antagonize/block biological processes mediated by αvβ3 and related integrin receptors, to combinatorial and solid phase methods for preparing libraries of compounds, and utilization of libraries of the compounds for drug discovery. The present invention further provides pharmaceutical compositions for administration to mammals, including man, and methods for their use in the treatment of various disorders including, but not limited to, cancer (tumor metathesis, tumorgenesis/tumor growth), angiogenesis (as in cancer, diabetic retinopathy, rheumatoid arthritis), restenosis (following balloon angioplasty or stent implantation), inflammation (as in rheumatoid arthritis, psoriasis), bone diseases (osteopenia induced by bone metastases, immobilization and glucocortocoid treatment, periodontal disease, hyperparathyroidism and rheumatoid arthritis), and as antiviral agents.
Background of Invention
The solid phase synthesis of non-peptidic small organic molecules is a rapidly evolving area of research with applications in the preparation of combinatorial libraries. While the solid phase synthesis of peptides is well established, the solid phase synthesis of non-peptidic small organic molecules is still evolving (Hermkens, P.H.H.; Ottenheijm, H.C.J.; Rees,D. Tetrahedron 1996, 52, 4527-4554). In particular, methods for solid phase synthesis of molecules of biological significance is of importance to drug discovery and is an active area of research.
The integrin αvβ3 has been shown to mediate the invasion of cancerous melanoma cells into healthy tissue and to protect these cells against natural cell death cycle (apoptosis). Vitronectin receptor(αyβ3 ) antagonists have been shown to inhibit the growth of various solid tumors of human origin. More recently, αvβ3 has been shown to be involved in liver metastasis. Although angiogenesis is an important and natural process in growth and wound healing, it is now appreciated that a variety of clinically relevant conditions are pathologically related to these processes, and that the integrin αvβ3 is involved. For example, αvβ3 was shown to be expressed on human wound tissue but not on normal skin and is preferentially expressed on angiogenic blood vessels, such as those feeding a growing/invading tumor. It has also been shown that antagonists of αvβ3 promote tumor regression by inducing apoptosis of the tumor cells. This process of neovascularization (new blood vessel growth, angiogenesis), which is critical for tumor growth and metastasis, is also an important event in occular tissue, leading to diabetic retinopathy, glaucoma and blindness and in joints, promoting rheumatoid arthritis. vβ3 has been shown to play a pivotal role in the proliferation and migration of smooth muscle and vascular endothetial cells, a pathological process leading to restenosis after balloon angioplastly (Choi et al., J. Vase. Surgery, 1994, 19, 125-134; Matsumo et al., Circulation, 1994, 90, 2203-2206). At least one type of virus (adenovirus) has been shown to utilize ocvβ3 for entering host cells (White et al., Current Biology, 1993, 596-599).
Various bone diseases involve bone resorption-the dissolution of bone matter, which is mediated by only one known class of cells, the osteoclasts. When activated for resorption, these motile cells initially bind to bone, a process well known to be mediated by αvβ3 (Davies et al., J. Cell. Biol., 1989, 109, 1817-1826; Helfrich et al., J Bone Mineral Res., 1992, 7, 335-343). It is also well known that blockade of αvβ3 with antibodies or RGD containing peptides block osteoclast cell adhesion and bone resorption in vitro (Horton et al., Exp. Cell Res. 1991, 195, 368-375) and that echistatin, an RGD containing protein, inhibits bone resorption in vivo (Fisher et al., Endocrinology, 1993, 132, 1411-1413). More recently, an RGD peptidomimetic has likewise been shown to inhibit osteoclasts in vitro and, by i.v. administration prevents osteoporosis (Engleman et al., J. Clin. Invest., 1997, 99, 2284-2292). Numerous patents/applications have claimed various non-peptide β3 inhibitors for some or all of the above applications (e.g. WO 95/32710, WO 97/08145, WO 97/33887, US 5681820). Combinatorial chemistry is becoming an important tool for drug discovery and lead optimization (Borman, S. Chemical and Engineering News 1997, 75 (8), 43- 63). A combinatorial synthesis requires that at least two components of the product molecules be independently variable, so that all of the combinations of these components can be prepared. A synthesis with three independently variable components is preferable since greater diversity in structure can be produced in the resultant library. Thus to prepare a combinatorial library of integrin inhibitors with a high degree of potential diversity and wide utility for drug discovery using solid phase techniques, it is important to identify a synthesis in which three components can be independently varied.
Most of the reported integrin inhibitors are RGD mimics and they use a β- amino acid like substituted 2,3-diaminopropionic acid as the carboxylic acid terminus. While a cyclic or acyclic guanidino moiety is preferred for the basic end of the molecule, substituted ureas and amidines are used as well. The central scaffold, connecting these two pieces, itself can be varied widely. By developing a convenient route to appropriately protected fragments and a mild solid phase synthesis that incorporates all the three components in an independent fashion, it is possible to prepare combinatorial libraries of this important class of integrin inhibitors. A solid-phase synthesis of integrin antagonist has been reported recently
(Corbett, J.W.; Graciani, N.R.; Mousa, S.A.; DeGrado, W.F. Bioorganic & Med Chem Lett. 1997, 7, 1371-1376). However, this synthesis on solid phase does not provide a means of varying the substitutions on the β-amino acid of the carboxy terminus and uses the commercially available α-N-CBZ-diaminopropionic acid as the only fragment. Hence, a combinatorial library synthesized using this method has limited utility in the drug discovery process lacking structure-activity data for all the regions of the molecule that can be independently varied. It is important to optimize this region of the inhibitors since the lipophilic substitutents in this region and the linkers used to connect these substituents have a significant effect on the activity of this class of molecules. Multiple compounds can be generated simultaneously by solid phase synthesis. The solid phase synthesis detailed in the present invention for the simultaneous generation of a library of integrin inhibitors where all three components can be varied is not known. The preparation of libraries of compounds of the present invention is useful because it provides rapid structural variation and structure- activity information.
Brief Description of Invention
Accordingly, the present invention discloses a solid phase synthesis process for producing compounds represented in formula (I):
Figure imgf000006_0001
(I) wherein:
Figure imgf000006_0002
R, and R-., independently are optionally substituted alkyl of 1-8 carbon atoms, optionally substituted alkenyl of 2-8 carbon atoms, optionally substituted alkynyl of 2-8 carbon atoms, optionally substituted cycloalkyl of 3-12 carbon atoms, optionally substituted aryl, optionally substituted aralkyl of 6-10 carbon atoms, optionally substituted aralkenyl of 6-10 carbon atoms, optionally substituted heterocycloalkyl of 5-10 members consisting of carbon atoms and from 1-3 heteroatoms selected from N, S and O, optionally substituted heterocycloalkyl-alkyl where the heterocycloalkyl has 5-10 members consisting of carbon atoms and from 1-3 heteroatoms selected from N, S and O, and the alkyl has 1-8 carbon atoms, optionally substituted heteroalkyl-alkenyl where the heteroalkyl has 5-10 members consisting of carbon atoms and from 1-3 heteroatoms selected from N, S and O and the alkenyl has 1-8 carbon atoms.
R3 is H, optionally substituted alkyl of 1-6 carbon atoms, optionally substituted aralkoxy of 1-6 carbon atoms;
X is NHCOO, NHCO, NHCONH, NHSO2;
Y is CH,, NH; Z is CH, N, S m is 0-4; and n is 0-3; or pharmaceutical salts thereof.
In some aspects of the invention G may preferably be pyrimidinyl, guanidine, pyridyl-urea, benzyl-urea, azepinyl, imidazolinyl or tetrahydropyrimidinyl.
In other aspects of the invention R. may be methyl, ethyl, n-propyl, i-propyl, allyl, homoallyl, propargyl, pentyl, n-hexyl, octyl, neopentyl, trichloroethyl, n-butyl, i-butyl, butynyl, phenyl, methylphenyl, dimethylphenyl, halophenyl, methoxyphenyl, acetylphenyl, biphenyl, naphthyl, benzyl, phenethyl, cyclohexyl, cyclohexylmethyl, trimethylcyclopropyl, phenylcyclopropyl, adamantyl, adamantylmethyl, cinnamic, pyridyl, or dimethylfuranyl.
In some preferred aspects of the present invention are provided compounds of
Formula (I) wherein G, W, R,, R2, R3, X, Y, Z, m and n are defined above, with the
proviso that when W is
Figure imgf000007_0001
and R3 is H, then G is not:
Figure imgf000008_0001
In still other preferred embodiments of the present invention G is
Figure imgf000008_0002
In other embodiments of the present invention it is preferred that W is
I
Figure imgf000008_0003
n yet other embodiments of the present invention G is
Figure imgf000008_0004
"Alkyl", whether used alone or as part of a group such as "alkoxy", means an optionally substituted branched or straight chain having from 1 to 8 carbon atoms. Exemplary alkyl groups include methyl, ethyl, propyl, isopropyl, butyl, isobutyl, t- butyl, pentyl and hexyl. Lower alkyl refers to alkyl having from 1 to 6 carbon atoms. Alkyl groups may be substituted with one or more substituents selected from halogen, lower alkyl, lower alkoxy, lower alkylthio, amino, nitro, cyano, carboxy, alkylamino, perhaloalkyl, hydroxy, oxy, phenyl, phenylalkyl, or naphthyl. One example of a substituted alkyl group is trichloroethyl.
"Cycloalkyl" as used herein refers to optionally substituted mono or polycyclic alkyl group of 3-12 carbon atoms. Exemplary cycloalkyl groups include cyclopropyl, cyclohexyl and adamantyl. Cycloalkyl groups may be substituted by one or more substituents e.g. those described above in relation to the optionally substituted alkyl group. Preferred substituents include aromatic groups such as phenyl and alkyl groups such as methyl. Examples of substituted cycloalkyl groups include trimethylcyclopropyl and phenylcyclopropyl.
"Aryl" whether used alone or as part of a group such as "aralkyl", means optionally substituted mono or bicyclic aromatic ring having from 5 to 10 carbon atoms. Exemplary aryl groups include phenyl and naphthyl. The aryl may be substituted with one or more substituents. Substituents include halogen, lower alkyl, lower alkoxy, lower alkylthio, amino, nitro, cyano, carboxy, carboxyalkyl, alkanoyl, alkylamino, perhaloalkyl, hydroxy, oxy, phenyl, phenylalkyl, or naphthyl. One preferred aryl group is phenyl which may be denoted as Ph in some instances. Examples of substituted aryls include methylphenyl, dimethylphenyl, halophenyl, methoxyphenyl, acetylphenyl and biphenyl.
"Heterocycloalkyl" whether used alone or as part of a group such as "heterocycloalkyl-alkyr' means an optionally substituted stable 5 to 10 membered mono or bicyclic ring of carbon atoms and from 1 to 3 heteroatoms selected from N, O and S. Exemplary heterocycloalkyls include pyrazinyl, pyrazolyl, tetrazolyl, furanyl, thienyl, pyridyl, imidazolyl, pyrimidinyl, tetrahydropyrimidinyl, isoxazolyl, thiazolyl, isothiazolyl, quinolinyl, indolyl, isoquinolinyl, oxazolyl and oxadiazolyl. Preferred heterocycloalkyl groups include pyrimidinyl, tetrahydropyrimidinyl, pyridyl, azepinyl, and imidazolyl. Most preferred heterocycloalkyls include pyridin-2yl, and tetrahydropyrimidine. The heterocycloalkyl may also be substituted with one or more substituents. Substituents include halogen, lower alkyl, lower alkoxy, lower alkylthio, amino, nitro, cyano, carboxy, carboxyalkyl, alkanoyl, alkylamino, perhaloalkyl, hydroxy, oxy, phenyl, phenylalkyl or naphthyl. Preferred substituents include amino and oxy. Preferred substituted heterocyloalkyls include 6 aminopyridin-2yl and tetrahydropyrirnid-4-one.
"Aralkyl" means an optionally substituted aryl-alkyl group in which the aryl, alkyl and the optional substitutents are as previously described. Exemplary aralkyl groups include benzyl and phenethyl. Used in this context, the alkyl group may include one or more double bonds.
"Heterocycloa-lkyl-alkyl" means an optionally substituted heterocycloalkyl-alkyl group in which the heterocycloalkyl, alkyl and optional substitutents are as previously described. Used in this context the alkyl group may include one or more double bonds. Exemplary heterocycloalkyl-alkyls include pyridylmethyl, pyridylethyl, thienylethyl, thienylmethyl, indolylmethyl, and furylmethyl.
"Alkoxy" means an optionally substituted alkyl-O group in which the alkyl group is as previously described. Exemplary alkoxy groups include methoxy, ethoxy, n-propoxy, i-propoxy, n-butoxy, and t-butoxy.
"Aralkoxy" means an optionally substituted aryl-alkoxy group in which aryl and alkoxy are as previously described.
"Halogen" includes fluorine, chlorine, iodine and bromine.
"Prodrug", as used herein means a compound which is convertible in vivo by metabolic means (e.g. by hydrolysis) to a compound of Formula I. Compounds of the present invention include all crystalline forms, pharmaceutically acceptable salts, enantiomers, racemic mixtures, and diasteromeric mixtures thereof.
Some preferred compounds of the present invention include:
2-benzyloxycarbonylamino-3-(2- {4-[2-(3-benzylureido)-ethyl]-piperazin- 1 -yl } acetylamino)-propionic acid; and
2-benzyloxycarbonylamino-3-(2-{4-[2-(3-benzylureido)-ethyl]-2,4-dioxo-3,4- dihydro-2H-quinazolin-l-yl} acetylamino)-propionic acid and pharmaceutically acceptable salts thereof.
Compounds of the present invention may be prepared in accordance certain solid phase methodology. In one aspect of the present invention, compounds of Formula (I) where
Figure imgf000011_0001
?N may be prepared in accordance with the steps of:
a) attaching a β- amino acid of the formula
X NHFmoc
to a solid support P to produce a compound of formula (1)
Figure imgf000011_0002
(1) wherein P is preferably a polystyrene resin cross-linked with divinylbenzene and functionalized with a linker such as a hydroxymethylphenoxy group, which is more preferably Wang's resin; b) deblocking the fluorenylmethyloxy carbonyl group of said compound of formula (1) with piperidine to produce a compound of formula (2);
Figure imgf000012_0001
(2) c) acylating compound of formula (2) with a chemical species selected from chloroformates, isocyanates, sulfonyl chlorides, carboxylic acid chlorides or carboxylic acids to produce a compound of formula (3)
Figure imgf000012_0002
(3) wherein X and R; are as defined above; d) deblocking the 4,4-dimethyl-2,6-dioxocylohex-l-ylideneethyl protecting group of said compound of formula (3) with hydrazine to produce a compound of formula (4);
Figure imgf000012_0003
(4) e) reacting said compound of formula (4) with a Fmoc protected amino carboxylic acid of formula (5)
FmocH XOH
(5) wherein W is as defined above, to produce a compound of formula (6);
Figure imgf000013_0001
(6) f) deblocking the fluorenylmethyloxy carbonyl group of said compound of formula (6) with piperidine to produce a compound of formula (7);
Figure imgf000013_0002
(7) g) reacting said compound of formula (7) with guanidilation reagents of formula (8) or (9) or (10) or amidation reagent of formula (11)
Figure imgf000013_0003
(8) (9) (10) (11) to produce a compound of formula (12)
Figure imgf000013_0004
(12) wherein
Figure imgf000013_0005
h) reacting said compound of formula (12) with a cleaving reagent like trifluoroacetic acid to produce a compound of formula (I)
Figure imgf000014_0001
(I) wherein R,, X, W and G are as defined above.
Also in accordance with the present invention, where
O
H f , compounds of Formula I may be prepared in accordance with steps a) through f) to produce compound of formula (7). This aspect of the methods of the invention further comprises the steps of : i) reacting said compound of formula (7) with isocyanates or with p-nitrophenyl chloroformate, followed by amine to produce a compound of formula (12)
Figure imgf000014_0002
(12) wherein
Figure imgf000014_0003
j) reacting said compound of formula (12) with a cleaving reagent like trifluoroacetic acid to produce a compound of formula (I)
Figure imgf000014_0004
(I) wherein R,, X, W and G are as defined above. The compounds of the present invention may be prepared according to the general process outlined in Scheme I.
attachment to solid support P
Figure imgf000015_0001
Figure imgf000015_0002
Figure imgf000015_0003
COCI
Figure imgf000015_0004
Figure imgf000015_0005
Scheme I Thus, the orthogonally protected 2,3-diaminopropionic acid is attached to a solid support P, which is preferably a resin of polystyrene cross- linked with divinylbenzene and with a linker such as 4-hydroxymethylphenoxy, most preferably Wang's resin as described below, in the presence of a coupling reagent such as 2-(lH-benzotriazole-l- yl)-l,l,3,3-tetramethyluronium hexafluorophosphate (HBTU)/ N-hydroxybenzo- triazole (HOBT) to produce a compound of formula (1). The compound of formula (1) is deprotected using 20% piperidine in DMF to yield a compound of formula (2), which provides the first handle for diversification.
A compound of formula (2) is reacted with either chloroformates or isocyantes or carboxylic acid chlorides or sulfonyl chlorides in a solvent like dichloromethane or tetrahydrofuran to yield a compound of formula (3). Alternatively, in the case of amide formation, a carboxylic acid is coupled directly with the compound of formula (2) in the presence of a coupling reagent like 1 ,3-diisopropylcarbodiimide (DIC) to produce the compound of formula (3). A compound of formula (3) is treated with 2% hydrazine to deprotect the (4,4-dimethyl-2,6-dioxocyclohex-l-ylidene)ethyl (dde) protecting group to yield a compound of formula (4), which provides a second handle for diversification. A compound of formula (4) is reacted with a Fmoc protected amino carboxylic acid of formula (5) in the presence of a coupling reagent like DIC to produce the compound of formula (6). The compound of formula (6) is deprotected using 20% piperidine in DMF to yield a compound of formula (7), which provides the third handle for diversification. The compound of formula (7) is reacted with N,N-bis-Boc-S-ethylthiourea or 2-(3,5-dimethylpyrazolyl)-4,5-dihydroimidazole or 2-bromopyrimidine or l-methoxy-2-azacylohept-l-ene to give a compound of formula (12). Alternatively, the compound of formula (7) is reacted with p- nitrophenyl chloroformate and the resulting carbamate was reacted with amines to give ureas of formula (12).
The compounds of the present invention are integrin inhibitors useful for their ability to antagonize biological processes mediated by αvβ3 and related integrin receptors including, but not limited to, cancer (tumor metastatis, tumorgensis, tumor growth), angiogenesis (as in cancer, diabetic retinopathy, rheumatoid arthritis), restenosis (following balloon angioplasty or stent implantation), inflammation (as in rheumatoid arthritis, psoriasis), bone diseases (osteopenia induced by bone metastases, immobilization and glucocortocoid treatment, periodontal disease, hyperparathyroidism and rheumatoid arthritis), and as antiviral agents. The effect of the compounds to inhibit integrin is determined by standard pharmacological tests.
Vitronectin Receptor (α^) Binding Assay
The purpose of this assay is to measure the effect of various compounds on the α^ - ligand interaction.
Reagents
Plasma Membrane Isolation: 15 confluent T150 flasks of 512P5 cells (a-ybj - over expressing cell line) are washed 2X with Dulbecco's phosphate buffered saline (D-PBS) without calcium or magnesium, pH 7.1. Cells are harvested with 10 mL of trypsin EDTA and collected by centrifugation. The cell pellet is washed 2X with 0.5 mg/mL of soybean trypsin inhibitor, and resuspended at 10% weight/volume in homogenization buffer (25 mM Tris-HCl, pH=7.4; 250 mM sucrose). The cell suspension is homogenized with 2x30 seconds bursts of a Polytron homogenizer. The homogenate is centrifuged at 3000g for 10 minutes at 4 C. The supernatant is collected, measured, and made 100 mM in NaCl and 0.2 mM in MgSO4. The supernatant is centrifuged at 22,000g for 20 minutes at 4 C, the pellet is resuspended in 7 mL of membrane buffer (25 mM Tris-HCl, pH=7.4; 100 mM NaCl; 2 mM MgCl2) by 5 strokes of a Dounce homogenizer (tight pestle) and recentrifuged at 22,000g for 20 minutes at 4 C. The pellet is resuspended in 0.5 mL/flask of membrane buffer (stock membranes) and frozen at -80C. Prior to use, stock membranes are Dounce homogenized and diluted 2 μL to 1000 μL in membrane buffer. See References
Compound Dilution: The stock compounds are dissolved in an appropriate vehicle (typically DMSO) and subsequently diluted in assay buffer composed as follows: 25 mM Tris-HCl ( pH=7.4), 100 mM NaCl, 2 mM MgCl2, 0.1% BSA.
Plate Preparation
Wells of Multiscreen-FB assay plates (Millipore MAFB NOB 50) are blocked with 150 mL of 0.1 % polyethylenimine for 2 hours at 4° C. Following incubation the wells are aspirated and washed with isotonic saline solution. Binding Assay
125 μL of assay buffer is added to each well. Next, 25 μL of labeled ligand is added to each well. 25 μL of unlabeled ligand is added to non-specific binding wells (NSB). 25 μL of assay buffer is added to all other wells. 2 μL of compound is added to appropriate sample wells, and 2 μL of DMSO is added to NSB and total binding (TB) wells. Finally, 25 μL of membrane is added to each well.
The plates are covered and incubated at 37° C for 2 hours in a humidified incubator. Wells are aspirated on a Millipore vacuum manifold, and the wells are washed with 150 μL isotonic saline solution. Wells are again aspirated. The plates are then dried for 1 hour in an 80° C vacuum drying oven. Plates are placed on a Millipore filter punch apparatus, and filters are placed in 12 x 75 mm polypropylene culture tubes. The samples are counted on a Packard gamma counter.
Example
Using 125I- Echistatin (specific activity = 2000 Ci mmol) supplied by -Amersham at a final concentration of 50pM, the following parameters are routinely observed;
Input 80000 cpm
Total Counts 8000 cpm
Non-specific binding 200 cpm
Analysis of Results:
The individual well activity is expressed as a percentage of the specific binding; % Max, and reported as the mean + standard deviation. Dose-inhibition relationships are generated for dose (X-axis) vs. % Max (Y-axis) for active compounds using a non-linear regression computer program (PS-NONLIN), and IC50 values with corresponding 95% confidence intervals are estimated from 50% of maximal attachment.
Reference Compounds:
Various Arginine-Glycine-Aspartic Acid (RGD)-containing peptides were assessed for the ability to inhibit avb3 binding and the corresponding IC50 values with 95% confidence intervals were generated; peptide structures are given by the standard single letter designation for amino acids. Values obtained compared favorably with adhesion assay results.
Peptide IC50 (μM) 95% Confidence Interval
GPenGRGDSPCA 0.064 0.038 to 0.102
GRGDSP 1.493 1.058 to 2.025
GRGDTP 0.490 0.432 to 0.556
GRGDS 0.751 0.690 to 0.817
RGDS 1.840 1.465 to 2.262
GRGDNP 0.237 0.144 to 0.353
GdRGDSP 0.692 0.507 to 0.942
GRGESP inactive at 100 μM
References
1. Nesbitt, S. A. And M. A. Horton, (1992), A nonradioactive biochemical characterization of membrane proteins using enhanced chemiluminescence. Anal. Biochem., 206 (2), 267-72.
Osteopontin-αvβ3 Cell Attachment Assay
The purpose of this assay is to measure the effect of various compounds on the RGD- dependent attachment of cells to osteopontin mediated by the αvβ3 integrin.
Reagents
Cell Suspension Media: The cells are suspended for assay in the tissue culture media used for normal culture maintenance buffered with 25 mM HEPES (pH 7.4) without serum supplementation.
Compound Dilution Media: The stock compounds are dissolved in an appropriate vehicle (typically DMSO) and subsequently diluted in the tissue culture media used for normal culture maintenance buffered with 25 mM HEPES (pH 7.4) supplemented with 0.2% BSA (no serum); final vehicle concentration is < 0.5%. Plate Preparation
Human recombinant osteopontin (Structural Biology Group, W-AR) is diluted to an appropriate concentration in Dulbecco's phosphate buffered saline (D-PBS) without calcium or magnesium, pH 7.1. 100 mL of this solution is incubated in the wells of PRO-BIND assay plates (Falcon 3915) for 2 hours at 37° C. Following incubation the wells are aspirated and washed once with D-PBS; plates can either be used immediately or stored for up to 1 week at 4° C. Prior to assay, the wells are blocked with 1% bovine serum albumin (BSA) in cell suspension media for 1 hour at 37° C. Following the blocking period, wells are aspirated and washed once with D- PBS.
Cell Suspension αvβ3-expressing cell lines are maintained by standard tissue culture techniques. For assay, the cell monolayer is washed three times with D-PBS, and the cells are harvested with 0.05% trypsin/0.53 mM EDTA (GIBCO). The cells are pelleted by low-speed centrifugation and washed three times with 0.5 mg/mL trypsin inhibitor in D-PBS (Sigma). The final cell pellet is resuspended in cell suspension media at a concentration of 10^ cells/mL.
Attachment Assay
Incubation: 100 mL of diluted test compound is added to osteopontin-coated wells (in triplicate) followed by 100 mL of cell suspension; background cell attachment is determined in uncoated wells. The plate is incubated at 25° C in a humidified air atmosphere for 1.5 hours. Following the incubation period, the wells are gently aspirated and washed once with D-PBS.
Cell Number Detection: The number of cells attached is determined by an MTT dye conversion assay (Promega) according to the manufacturer's instructions. Briefly, MTT dye is diluted in cell suspension media (15:85) and 100 mL is added to each well. The assay plates are incubated for 4 hours at 37° C in a humidified 5% CO2/95% air atmosphere, followed by the addition of 100 mL stopping/solubilization solution. The assay plates are covered and incubated at 37° C in a humidified air atmosphere overnight. After the solubilization period, the optical density of the wells is measured at a test wavelength of 570 nM with a reference measurement taken simultaneously at 630 nM. Analysis of Results:
The individual well optical density is expressed as a percentage of the maximal attachment (% Max) wells minus background attachment, and reported as the mean + standard deviation. Dose-inhibition relationships are generated for dose (X-axis) vs. % Max (Y-axis) for active compounds using a non-linear regression computer program (PS-NONLIN), and IC50 values with corresponding 95% confidence intervals are estimated from 50% of maximal attachment.
Reference Compounds:
Various Arginine-Glycine-Aspartic Acid (RGD)-containing peptides, and monoclonal antibodies were assessed for the ability to inhibit osteopontin-αyβ3 attachment and the corresponding IC50 values with 95% confidence intervals were generated in the SK-MEL-24 human malignant melanoma cell line; peptide structures are given by the standard single letter designation for amino acids:
Peptide IC n (95% Confidence Interval)
GPenGRGDSPCA 0.58 mM (0.51 TO 0.67) n-Me-GRGDSP 4.0 mM (3.4 TO 4.7) GRGDSP 4.1 mM (3.4 TO 4.9) GRGDTP 5.2 mM (3.4 TO 4.9)
Antibody Dilution % Max Attachment (mean + SD) avb5 (P1F6) 1:1000 111 + 3.3
1:100 112 ± 2.6
1:10 111 ± 3.3 aγb3 (LM609) 1 :1000 0
1:100 5.1 + 1.7
Literature References:
Ruoslahti, R. Fibronectin and its receptors. Ann. Rev. Biochem. 57:375-413, 1988.
Hynes, R.O. Integrins: Versatility, modulation, and signaling in cell adhesion. Cell. 69: 11-25, 1992. OSTEOCLAST PITTING ASSAY
The assay is conducted as described in Murrills and Dempster (1990) Bone 11:333- 344. Briefly, 4 x 4 x 0.2mm slices of devitalized bovine cortical bone are numbered, placed in the wells of 96- well culture plates and wetted with lOOul of Medium 199 containing Hanks salts, lOmM HEPES, pH 7.0 (Medium 199/Hanks). Bone cell suspensions containing osteoclasts are prepared by mincing the long bones of neonatal rats (Sprague-Dawley , 4-6 days old) in Medium 199/Hanks. IOOUL of the suspension are then plated onto each slice and incubated 30 minutes to allow osteoclasts to adhere. The slices are rinsed to remove non-adherent cells and incubated 24h in Medium 199 containing Earle's salts, lOmM HEPES and 0.7g/L NaHCO3, which equilibrates at pH 6.9 in a 5% CO2 atmosphere. At this pH the adherent osteoclasts excavate an adequate number of resorption pits for assay purposes. Slices are fixed in 2.5% glutaraldehyde and osteoclasts counted following tartrate-resistant acid phosphatase staining. In experiments in which osteoclast numbers are significantly reduced in a particular treatment, a check is made for nonspecific cytotoxicity by counting the number of contaminant fibroblast-like cells following toluidine staining. All cells are stripped from the slice by sonication on 0.25M NH4OH and the resorption pits formed by the osteoclasts during the experiment stained with toluidine blue. Resorption pits are quantified by manually counting.
Statistics
The experiments are conducted according to a block design with osteoclasts from each animal exposed to each treatment. Three replicate slices are used per treatment per animal, such that a total of 96 slices are examined for an experiment involving four animals and eight treatments (including control). Several parameters are recorded on a "per slice" basis: number of pits, number of osteoclasts, number of pits per osteoclast, number of fibroblast-like bone cells. SAS or JMP statistical software are used for statistical analysis. If analysis of variance reveals significant effects in the experiment, those treatments differing significantly from control are identified using Dunnett's test. IC50S are calculated for active compounds using dose-response curves.
Reference Compound: Rat calcitonin.
Clinical Relevance:
Osteoclasts are responsible for the bone loss that occurs in the onset of osteoporosis and anti-resorptive drugs directed against the osteoclast are a requirement for patients losing bone. Calcitonin and bisphosphonates, both used as anti-resorptives in the clinic, show significant osteoclast inhibitory activity in this assay. Hence it is a reasonable assay in which to identify novel anti-resorptives.
Specific procedures are described in the following experimental examples. These examples are given to illustrate the invention and should not be construed as limiting the invention set forth in the appended claims.
Example 1 Preparation of 3-(4,4-dimethyl-2,6dioxocylohex-l-yIideneethyl)amino-2- (Fluorenylmethyloxycarbonyl)amino-propionic Acid on Wang Resin (1)
Figure imgf000023_0001
(1) Wang resin (Wang, S. J. Am. Chem. Soc. 1973, 95, 1328-1333) (Advanced
ChemTech 200-400 mesh, 1% crosslinked; loading: 1.2 mmol/g; 5g, 4.6 mmol) was swollen in N,N-dimethylformamide (DMF) (20 mL). A solution of N-α-fmoc-N-β-
1 -(4,4-dimethyl-2,6-dioxocyclohex- 1 -ylidene)ethyl-L-diaminopropionic acid (Fmoc-
Dpr(Dde)-OH) (Nova Biochem) (4.513g; 9.2 mmol) in DMF (30mL) was treated with N-hydroxybenzotriazole (HOBT) (1.242g; 9.2 mmol), 2-(lH-benzotriazole-l- yl)-l,l,3,3-tetramethyluronium hexafluorophosphate (HBTU) (3.487g; 9.2 mmol) and N,N-diisopropylethylamine (DIE A) (3.2 mL; 18.4 mmol) and added to the resin. The mixture was shaken at room temperature for 8 h. The mixture was filtered and the resin was washed with DMF (3X40mL), methanol (MeOH) (3X40mL) and dichloromethane (DCM) (3X 40mL). The resin was dried in vacuo to give 7.462g. Resin Loading: 1.01 mmol g.
Example 2 Preparation of 2- Amino- 3-(4,4-dimethyl-2,6-dioxocylohex-l-ylideneethyl)amino- propionic Acid on Wang Resin (2)
Figure imgf000024_0001
The resin prepared according to example 1 (7.085 g) in DMF was treated with 20% piperidine in DMF (40mL) for 10 min and filtered. Another 40mL portion of 20% piperidine in DMF was added to the resin and shaken at room temperature for 20 min. The resin was filtered and washed with DMF (3X40mL), MeOH (3X40mL) and DCM (3X 40mL). The resin was dried in vacuo.
Example 3 Parallel Synthesis of 3-(4,4-dimethyl-2,6-dioxocylohex-l-ylideneethyl)amino- propionic acid 2-carbamates on Wang Resin (3)
Figure imgf000024_0002
Fourteen compounds were synthesized in parallel using custom made manual synthesizer using fitted syringes as reaction vessels. The resin prepared according to the example 2 was placed in the reaction vessel (750 mg per vessel; 0.75 mmol). The resin in each vessel was swollen with dichloromethane. To each vessel was added diisopropylethylamine (969 mg; 1.3 mL; 7.5 mmol). Methyl chloroformate (283.5 mg; 3mmol) was added to vessel 1; Ethyl chloroformate (325.6 mg; 3mmol) was added to vessel 2; n-Propyl chloroformate (367.7 mg; 3mmol) was added to vessel 3; i-Propyl chloroformate (367.7 mg; 3mmol) was added to vessel 4; Allyl chloroformate (361.6 mg; 3mmol) was added to vessel 5; 3-Butenyl chloroformate (403.7 mg; 3mmol) was added to vessel 6; Propargyl chloroformate (355.6 mg; 3mmol) was added to vessel 7; n-Hexyl chloroformate (493.9 mg; 3mmol) was added to vessel 8; Octyl chloroformate (578.1 mg; 3mmol) was added to vessel 9; Neopentyl chloroformate (451.8 mg; 3mmol) was added to vessel 10; 2,2,2- Trichloroethyl chloroformate (635.6 mg; 3mmol) was added to vessel 11 ; n-Butyl chloroformate (409.7 mg; 3mmol) was added to vessel 12; i-Butyl chloroformate (409.7 mg; 3mmol) was added to vessel 13; Benzyl chloroformate (511.8 mg; 3mm ol) was added to vessel 14. The reaction vessels were shaken at room temperature using orbital shaker (Thermolyne RotoMix Type 50800) for 18 h. The mixtures were filtered and the resin in each vessel was washed with dichloromethane (4 x 4 mL), methanol (4 x mL) and dichloromethane (2 x 4 mL). The resins were dried under vacuum. A sample of resin from each vessel was removed and subjected to Kaiser Ninhydrin test. If the test showed the presence of free amine (resin turned blue) the coupling described above was repeated. A sample of the resin was removed from reaction vessel 10 and subjected to cleavage with dichloromethane (0.5 mL) and trifluroacetic acid (0.5 mL) for 30 min at room temperature. The reaction mixture was filtered and the resin was washed with dichloromethane. The filtrate was concentrated and dried in vacuo on a Savant Speed Vac Plus. The product was characterized by HPLC: 4.28 min (82% @ 220 nm); MS: 383 (M+H)+. Example 4 Parallel Synthesis of 3-Aminopropionic acid 2-carbamates on Wang Resin (4)
Figure imgf000026_0001
(4) All the Fourteen reaction vessels containing 3-(4,4-dimethyl-2,6-dioxocylo- hex-l-ylideneethyl)amino-propionic acid 2-carbamates on Wang Resin (3) prepared according to the example 3 were shaken with a solution of 2% hydrazine in dimethyl- formamide (3mL) for 5 min. at room temperature. The reaction mixture was filtered and an additional 3 mL of a solution of 2% hydrazine in dimethylformamide was added and the reaction vessels were shaken at room temperature for 5 min. The mixtures were filtered and the resin in each vessel was washed with dimethylformamide (4 x 4 mL), methanol (4 x mL) and dichloromethane (4 x 4 mL). The resins were dried under vacuum. A sample of resin from each vessel was removed and subjected to Kaiser Ninhydrin test for the presence of free amine (resin turns blue).
A sample of the resin was removed from reaction vessel 10 and subjected to cleavage with dichloromethane (0.5 mL) and trifluroacetic acid (0.5 mL) for 30 min at room temperature. The reaction mixture was filtered and the resin was washed with dichloromethane. The filtrate was concentrated and dried in vacuo on a Savant Speed Vac Plus. The product was characterized by HPLC: 4.686 min (78% @ 220 nm); MS: 219 (M+H)\
Example 5 Preparation of 4-[(2-fluorenylmethyIoxycarbonylamino)ethoxy]-2- hydroxybenzoic acid (15)
The compound was prepared as shown in Scheme π.
1. KOH 2. HCI
Figure imgf000027_0002
Scheme II
The detailed synthetic procedures is described in the following Steps 1-3. Step 1: Methyl 4-[2-N-(t-butoxycarbonyl)ethoxy]-2-hydroxy benzoate (13)
Methyl 2, 4-dihydroxy benzoate (14.5g, Aldrich), 2-(N-t-butoxycarbonyl)- ethanol (13.9g, -Aldrich) and triphenyl phosphine (22.6g, Aldrich) were combined in 350 mL of THF and cooled in ice under N2 atmosphere. Diethyl diazodicarboxylate (DEAD) (15g, Aldrich) was added, the ice bath removed and the reaction mixture allowed to stir at ambient temperature for 15h. The solvent was removed on a rotary evaporator and the residue chromatographed on silica gel (300g, Merck silica 60), elution with CH2C12 to give 18g of methyl 4-[2-N-(t-butoxycarbonyl)ethoxy]-2- hydroxy benzoate, as a viscous oil. NMR (300 MHz, CDC13) d 11.0 (s, 1 H), 9.5 (d, J = 8Hz, 1H), 6.4 (m, 2H), 5.0 (broad, 1H), 4.0 (t, J = 5Hz, 2H), 3.91 (s, 3H), 3.54 (m, 2H), 1.45 (s, 9H), MS (+ESI) m/z 334 (M+Na)\
Step 2: 4-(2-Aminoethoxy)-2-hydroxybenzoic acid, hydrochloride (14)
Ester (13) (7.2g) from Step 1 was treated with 5eq. KOH (dissolved in minimum amount of water and equal volume of 1, 4-dioxane) at room temperature until TLC indicated complete absence of starting material (3-12h). The reaction mixture was acidified (pH = 6) with the addition of IN HCI solution and extracted with ethyl acetate. The extract was washed with saturated aqueous brine solution, dried over MgSO4, filtered and concentrated on the rotary evaporator. The crude product (5.34g) was recrystallized from ether, then dissolved in 1, 4-dioxane and treated with an excess of anhydrous HCI (4M in dioxane, -Aldrich). The mixture was allowed to stand at ambient temperature for 24h. Volatile materials were removed in vacuo on the rotary evaporator to give as a hydroscopic off-white solid. NMR (400 MHz, DMSO-d6) d 13.6 (broad, IH), 11.6 (broad, IH), 8.3 (broad, 3H), 7.7 (d, J = 9 Hz, 2H), 6.53 (m, 2H), 4.23 (t, J = 5Hz, 2H), 3.2 (s, broad, 2H).
Step 3: 4-[(2-fluorenylmethyloxycarbonylamino)ethoxy]-2-hydroxybenzoic acid
(15)
The Amino acid (14) (1.864g; 8 mmol) from Step 2 was dissolved in 1:1 acetone - water (50 mL) containing Sodium Carbonate (1.696g; 16 mmol). To the solution was added Fmoc-Osu (2.696 g; 8 mmol) in acetone (25 mL) dropwise at room temperature. The solution was stirred at room temperature for 18 h. The reaction mixture was concentrated and the residue was dissolved in water and extracted with ether (2x50 mL). The aqueous layer was cooled in an ice bath and acidified with 6N HCI to pH 3. The solid obtained was filtered and washed with water and dried under vacuo (3.22g). NMR (300 MHz, DMSO-d6) δ 7.9 (d, 2H), 7.65-7.75 (m, 2H), 7.55 (t, 2H), 7.4 (t, 2H), 7.3 (t, 2H), 6.5 (m, 2H), 4.35 (d, 2H), 4.25 (t, IH), 4.05 (t, 2H), 3.4 (t, 2H).
Example 6
Parallel Synthesis of 3-[4-(2- fluorenylmethyloxycarbonylaminoethoxy-2- Hydroxy)-benzoylamino]-propionic acid 2-carbamates on Wang Resin (6)
Figure imgf000028_0001
All the Fourteen reaction vessels containing 3-aminopropionic acid 2- carbamates on Wang Resin (4) prepared according to the example 4 were washed with DMF to swell the resin. A solution of 4-[(2-fluorenylmethyloxycarbonyl- amino)ethoxy]-2-hydroxybenzoic acid (15) (628.5 mg; 1.5 mmole) prepared as shown in Scheme II, example 5 in DMF was mixed with diisopropylcarbodiimide (189 mg; 1.5 mmole), hydroxybenzotriazole (202.5 mg; 1.5 mmole) and dimethylaminopyridine (18.33 mg; 0.15 mmole) and the mixture was added each reaction vessel. The reaction vessels were shaken at room temperature for 16h. The mixtures were filtered and the resin in each vessel was washed with dimethyl- formamide (4 x 4 mL), methanol (4 x mL) and dichloromethane (4 x 4 mL). The resins were dried under vacuum. A sample of resin from each vessel was removed and subjected to Kaiser Ninhydrin test. If the test showed the presence of free amine (resin turned blue) the coupling described above was repeated.
Example 7
Parallel Synthesis of 3-[4-(2-aminoethoxy)-2-hydroxy-benzoylamino]-propionic acid 2-carbamates on Wang Resin (7)
Figure imgf000029_0001
All the Fourteen reaction vessels containing 3-[2-Hydroxy-4-(2-amino- ethoxy)benzoylamino]-propionic acid 2-carbamates on Wang Resin (6) prepared according to the example 6 were shaken with a solution of 20% piperidine in DMF (5mL) for 10 min and filtered. Another 5mL portion of 20% piperidine in DMF was added and shaken at room temperature for 20 min. The resin in each vessel was filtered and washed with DMF (3 x 40mL), MeOH (3 x 40mL) and DCM (3 x 40mL). The resins were dried under vacuum.
A sample of the resin was removed from reaction vessel 10 and subjected to cleavage with dichloromethane (0.5 mL) and trifluroacetic acid (0.5 mL) for 30 min at room temperature. The reaction mixture was filtered and the resin was washed with dichloromethane. The filtrate was concentrated and dried in vacuo on a Savant Speed Vac Plus. The product was characterized by HPLC: 3.35 min (70% @ 220 nm); MS: 398 (M+H)\ Example 8 Parallel Synthesis of 3-[4-(2-guanidinoethoxy)-2-hydroxy-benzoylamino]- propionic acid 2-carbamates
Figure imgf000030_0001
A sample 100 mg of resin (0.1 mmole) from each of the reaction vessels in Example 7 was transferred to 14 new reaction vessels and the resin was swollen in DMF. To each vessel was added a solution of l,3-bis(tert-butoxycarbonyl)-2-methyl- 2-thiopseudourea (145 mg; (0.5 mmole) in DMF (1.5 mL) followed by diisopropyl- amine (0.15 mL; 1 mmole). The reaction vessels were shaken at room temperature for 18h. The mixtures were filtered and the resin in each vessel was washed with dimethylformamide (4 x 4 mL), methanol (4 x mL) and dichloromethane (4 x 4 mL). The resins were dried under vacuum. A sample of resin from each vessel was removed and subjected to Kaiser Ninhydrin test. If the test showed the presence of free amine (resin turned blue) the coupling described above was repeated.
The product was cleaved from the resin by treatment with dichloromethane (0.5 mL) and trifluroacetic acid (0.5 mL) for 30 min at room temperature. The reaction mixture was filtered and the resin was washed with dichloromethane. The filtrate was concentrated and dried in vacuo on a Savant Speed Vac Plus. This crude material was purified via preparative HPLC. The LC and MS data for all the compounds isolated (A4-N4) are shown in the Table 2. Representative compounds were characterized by IH NMR.
2(S)-(2,2-Dimethyl-propoxycarbonylamino)-3-[4-( 2-guanidino-ethoxy)-2-hydroxy- benzoylamino]-propionic acid (J4): NMR (300MHz, MeOH-d4) δ 7.7 (d, J = 7 Hz, IH), 6.5 (m, 2H), 4.5 (q, IH), 4.2 (m, 2H), 3.85 (m, IH), 3.8 (m, 2H), 3.75 (m, IH), 3.7 (m, 2H), 0.9 (s, 9H).
HR-MS FAB m/z for C19H29N5O7 calcd. 440.2145 (M++l), obsd. 440.2154. 2(S)-Benzyloxycarbonylamino-3-[4-(2-guanidino-ethoxy)-2-hydroxy-benzoylamino]- propionic acid (N4): NMR (300MHz, DMSO-d6) δ 12.8 (s, IH), 8.8 (t, J = 8 Hz, IH), 7.8 (d, J = 9 Hz, IH), 7.7 (m, IH), 7.3 (m, 5H), 7.25 (m, IH), 6.5 (m, 2H), 5.1 (s, 2H), 4.25 (q, IH), 4.1 (t, 2H), 3.8 (m, 3H), 3.7 (m, IH), 3.5 (m, 2H).
Example 9
Parallel Synthesis of 3-{4-[2-(4,5-dihydroimidazole-2-ylamino)-ethoxy]-2- hydroxy-benzoylamino}-propionic acid 2-carbamates
Figure imgf000031_0001
A sample 100 mg of resin (0.1 mmole) from each of the reaction vessels in
Example 7 was transferred to 14 new reaction vessels and the resin was swollen in DMF. To each vessel was added a solution of 2-(3,5-dimethylpyrazolyl)-4,5- dihydroimidazole hydrobromide (123 mg; 0.5 mmole) in DMF (1.5 mL) followed by diisopropylamine (0.15 mL; 1 mmole). The reaction vessels were shaken at 60 °C for 18h. The mixtures were filtered and the resin in each vessel was washed with dimethylformamide (4 x 4 mL), methanol (4 x mL) and dichloromethane (4 x 4 mL). The resins were dried under vacuum. A sample of resin from each vessel was removed and subjected to Kaiser Ninhydrin test. If the test showed the presence of free amine (resin turned blue) the coupling described above was repeated. The product was cleaved from the resin by treatment with dichloromethane
(0.5 mL) and trifluroacetic acid (0.5 mL) for 30 min at room temperature. The reaction mixture was filtered and the resin was washed with dichloromethane. The filtrate was concentrated and dried in vacuo on a Savant Speed Vac Plus. This crude material was purified via preparative HPLC. The LC and MS data for all the compounds isolated (A5-N5) are shown in the Table 2. Representative compounds were characterized by IH NMR. 3-{4-[2-(4,5-dihydroimidazole-2-ylamino)-ethoxy]-2-hydroxy-benzoylamino}-2- (2,2-dimethyl-propoxycarbonylamino)-propionic acid (J5): NMR (300MHz, MeOH- d4) δ 7.7 (d, J = 7 Hz, IH), 6.5 (m, 2H), 4.5 (q, IH), 4.2 (t, 2H), 3.85 (m, IH), 3.75- 3.8 (m, 7H), 3.5 (t, 2H), 0.9 (s, 9H). HR-MS FAB m/z for C21H31N5O7 calcd. 466.2302 (M++l), obsd. 466.2289.
Example 10
Parallel Synthesis of 3-{2-hydroxy-4-[2-(4,5,6,7-tetrahydro-3H-azepin-2- ylamino)-ethoxy]-benzoylamino}-propionic acid 2-carbamates
Figure imgf000032_0001
A sample 100 mg of resin (O.lmmole) from each of the reaction vessels in Example 7 was transferred to 14 new reaction vessels and the resin was swollen in dioxane. To each vessel was added a solution of l-aza-2-methoxy-l-cycloheptene (127 mg; 1 mmole) in dioxane (1.5 mL). The reaction vessels were shaken at room temperature for 18h. The mixtures were filtered and the resin in each vessel was washed with dioxane (4 x 4 mL), methanol (4 x mL) and dichloromethane (4 x 4 mL). The resins were dried under vacuum. A sample of resin from each vessel was removed and subjected to Kaiser Ninhydrin test. If the test showed the presence of free amine (resin turned blue) the coupling described above was repeated. The product was cleaved from the resin by treatment with dichloromethane
(0.5 mL) and trifluroacetic acid (0.5 mL) for 30 min at room temperature. The reaction mixture was filtered and the resin was washed with dichloromethane. The filtrate was concentrated and dried in vacuo on a Savant Speed Vac Plus. This crude material was purified via preparative HPLC. The LC and MS data for all the compounds isolated (A6-N6) are shown in the Table 2. Representative compounds were characterized by IH NMR. 2-(2,2-Dimethyl-propoxycarbonylamino)-3-{2-hydroxy-4-[2-(4,5,6,7-tetrahydro-3H- azepin-2-ylamino)-ethoxy]-benzoylamino}-propionic acid (N6): NMR (300MHz, DMSO-d6) δ 12.8 (s, IH), 9.55 (t, IH), 9.25 (t, IH), 8.8 (t, IH), 7.8 (d, J = 9 Hz, IH), 7.7 (d, J = 8 Hz, IH), 7.3 (m, 5H), 6.5 (m, 2H), 5.0 (s, 2H), 4.3 (q, IH), 4.2 (t, 2H), 3.8 (m, 3H), 3.6 (m, IH), 3.5 (m, 2H), 2.7 (m, 2H), 1.7 (m, 2H), 1.6 (m, 4H),
Example 11 Parallel Synthesis of 3-{4-[2-(3-benzylureido)-ethoxy]-2-hydroxy-benzoylamino}- propionic acid 2-carbamates
Figure imgf000033_0001
A sample 100 mg of resin (O.lmmole) from each of the reaction vessels in Example 7 was transferred to 14 new reaction vessels and the resin was swollen in 1:1 Tetrahydrofuran and dichloromethane. To each vessel was added a solution of 4- nitrophenylchloroformate (50 mg; 0.25 mmole) in 1:1 THF: DCM (1.5 mL) followed by diisopropylamine (0.075 mL; 0.5 mmole). The reaction vessels were shaken at room temperature for 30 min. The mixtures were filtered and the resin in each vessel was washed with THF (4 x 4 mL) and dichloromethane (4 x 4 mL) and dried. The resin in each vessel was suspended in DMF (1.5 mL) and benzyl amine (54 mg; 0.5 mmole) was added followed by triethylamine (101 mg; 1 mmole). The mixtures were filtered and the resin in each vessel was washed with dimethylformamide (4 x 4 mL), methanol (4 x mL) and dichloromethane (4 x 4 mL). The resins were dried under vacuum.
The product was cleaved from the resin by treatment with dichloromethane (0.5 mL) and trifluroacetic acid (0.5 mL) for 30 min at room temperature. The reaction mixture was filtered and the resin was washed with dichloromethane. The filtrate was concentrated and dried in vacuo on a Savant Speed Vac Plus. This crude material was purified via preparative HPLC. The LC and MS data for all the compounds isolated (Al-Nl) are shown in the Table 2. Representative compounds were characterized by IH NMR.
3-{4-[2-(3-benzylureido)-ethoxy]-2-hydroxy-benzoylamino}-2-(2,2-dimethyl- propoxycarbonylamino)-propionic acid (Jl): NMR (300MHz, MeOH-d4) δ 7.65 (d, J = 7 Hz, IH), 7.25 (m, 5H), 6.5 (m, 2H), 4.4 (q, IH), 4.3 (s, 2H), 4.15 (t, 2H), 3.85 (m, IH), 3.75 (m, 3H), 3.5 (t, 2H). 0.9 (s, 9H).
HR-MS FAB m/z for C26H34N4O8 calcd. 531.2455 (M++l), obsd. 531.2459.
Example 12 Parallel Synthesis of 3-{2-hydroxy-4-[2-(3-pyridin-3-yImethyl-ureido)-ethoxy]- benzoy!amino}-propionic acid 2-carbamates
Figure imgf000034_0001
Compounds A3-N3 were prepared by following the procedure detailed in example 12, by employing 3-pyridylmethylamine in the place of benzyl amine. The LC and MS data for all the compounds isolated (A3-N3) are shown in the Table 2.
Example 13
Parallel Synthesis of 3-{2-hydroxy-4-[2-(3-pyridin-4-ylmethyl-ureido)-ethoxy]- benzoylamino}-propionic acid 2-carbamates
Figure imgf000034_0002
Compounds A2-N2 were prepared by following the procedure detailed in example 12, by employing 4-pyridylmethylamine in the place of benzyl amine. The LC and MS data for all the compounds isolated (A2-N2) are shown in the Table 2. Example 14 Preparation of 4-[(2-fluorenylmethyloxycarbonylamino)ethoxy]-2- hydroxybenzoic acid (4)
The compound was prepared as shown in Scheme in.
Figure imgf000035_0001
Scheme HI
The detailed synthetic procedures is described in the following 2 steps.
Step 1: 2-Hydroxy-4-[2-(pyrimidine-2ylamino)ethoxy]benzoic acid (16)
A mixture of compound (14) (20g), dissopropylethylamine (74 mL), trimethylsilylchloride (21.6 mL) and 2-bromopyrimidine (Lancaster, 13.5g) were combined in 350 mL 1, 4-dioxane at room temperature, then brought to reflux under N, atmosphere. After 2 days, an additional 12 mL silylchloride was added, and the mixture continued at reflux for an additional 2 days (until TLC showed no starting material remained). The reaction mixture was cooled to ambient temperature, concentrated to dryness in vacuo on a rotary evaporator and the residue suspended in water. The heterogeneous mixture was refluxed briefly, allowed to cool to room temperature, the product collected on a vacuum filter and air dried to give 15.3g of (16), as a tan powder. NMR (400 MHz, DMSO-d6) d 12 (very broad, 2H) 8.3 (d, J = 5 Hz, 2H) 7.7 (d, J = 9Hz, IH), 7.28 (t, J = 6Hz, IH), 6.57 (t, J = 5Hz, IH), 6.49 (m, 2H), 4.13 (t, J = 6Hz, 2H), 3.62 (q, 2H); MS (+ESI) m/z 276 (M+H)+ ; IR (KBr) n (cm 1) 3275, 3000, 1660, 1625. Step 2: 2-Hydroxy-4-[2-(3,4,5,6-tetrahydropyrimidin-zylamino) ethoxy]-benzoic acid (17)
Compound (16) (2g) was combined with 10% Pd/C (0.5g), acetic acid (100 mL) and concentrated hydrochloric acid (0.7 mL). The mixture was stirred at room temperature under an atmosphere of H2 (balloon) for 2 days. Celite was added and the mixture stirred for 0.5h, then filtered through a pad of celite with the aid of isopropanol. Volatile materials were removed on the rotary evaporator and the residue warmed with heptane (~0.5h, 100°C) followed by concentration in vacuo to give (17) as a tan foam. NMR (400 MHz, DMSO-d6) δ 12.9 (broad, 2H), 8.25 (s, broad, 2H), 7.85 (t, J = 6hz, IH), 7.66 (d, J = 9 Hz, IH), 6.48 - 6.41 (m, 2H), 4.07 (t, J = 5Hz, 2H), 3.56 - 3.50 (m, 2H), 3.22 (m, 2H, overlapping with H2O peak), 1.79 (m , 2H); IR (KBr) n (cm 1) 3450 (broad); MS (+ESI) m/z 280 (M + H)+ .
Example 15 Parallel Synthesis of 3-{2-Hydroxy-4-[2-(l,4,5,6-tetrahydropyrimidin-2- ylamino)-ethoxy]-benzoylamino}-propionic acid 2-carbamates
Figure imgf000036_0001
A lOOmg sample of all fourteen 3-aminopropionicacid 2-carbamates (4) on Wang resin synthesized as detailed in example 4 were individually washed with DMF to swell the resin. A solution of 2-hydroxy-4-[2-(3,4,5,6-tetrahydropyrimidin-2- ylamino)ethoxy]-benzoic acid (17) (70 mg; 0.25mmole) prepared as shown in Scheme III, example 14 in DMF was mixed with diisopropylcarbodiimide (32 mg; 0.25 mmole), hydroxybenzotriazole (38mg; 0.25 mmole) and dimethylaminopyridine (3 mg; 0.025 mmole) and the mixture was added each reaction vessel. The reaction vessels were shaken at room temperature for 16h. The mixtures were filtered and the resin in each vessel was washed with dimethylformamide (4 x 4 mL), methanol (4 x mL) and dichloromethane (4 x 4 mL). The resins were dried under vacuum. A sample of resin from each vessel was removed and subjected to Kaiser Ninhydrin test. If the test showed the presence of free amine (resin turned blue) the coupling described above was repeated.
The product was cleaved from the resin by treatment with dichloromethane (0.5 mL) and trifluroacetic acid (0.5 mL) for 30 min at room temperature. The reaction mixture was filtered and the resin was washed with dichloromethane. The filtrate was concentrated and dried in vacuo on a Savant Speed Vac Plus. This crude material was purified via preparative HPLC. The LC and MS data for all the compounds isolated (A7-N7) are shown in the Table 2. Representative compounds were characterized by IH NMR. 2-(2,2-Dimethyl-propoxycarbonylamino)-3-{2-hydroxy-4-[2-(l, 4,5,6- tetrahydropyrimidin-2-ylamino)-ethoxy]-benzoylamino}-propionic acid (J7): NMR (400MHz, MeOH-d4) δ 7.7 (d, J = 7 Hz, IH), 6.5 (m, 2H), 4.45 (q, IH), 4.1 (t, 2H), 3.8 - 3.65 (m, 4H), 3.55 (t, 2H), 3.35 (t, 4H), 2.0 (m, 2H), 0.9 (s, 9H).
HR-MS FAB m/z for C22H33N5O7 calcd. 480.2458 (M++l), obsd. 480.2431.
Table 1 Parallel Synthesis of various N-substituted Carbamates (I)
Figure imgf000038_0001
Table 1 (continued) Parallel Synthesis of various N-substituted Carbamates (I)
Figure imgf000039_0001
Figure imgf000039_0002
Table 2
LC1 & MS Data for the Carbamates from parallel synthesis
00
Figure imgf000040_0001
Table 2 (continued) LC1 & MS Data for the Carbamates from parallel synthesis
Figure imgf000041_0001
1 LC Conditions: HP 1100, 23 °C, 10 μL injected; Column: YMC-ODS-A 4.6X50 5μ; Gradient A: 0.05% TFA/Water, B: 0.05% TFA/Acetonitrile; Time 0 & 1 min: 98%A & 2%B; 7 min: 10% A & 90%B; 8 min: 10%A & 90%B; 8.9 min: 98%A & 2%B; Post time 1 min; Flow rate 2.5 mL/min; Detection: 215 and 254 nm, DAD
Example 16 Parallel Synthesis of 3-[4-(2-guanidinoethoxy)-2-hydroxy-benzoylamino]- propionic acid 2-ureas (I)
Figure imgf000042_0001
These compounds were prepared by following the procedures detailed in examples 1-8, but for example 3, wherein the chloroformates were replaced by isocyanates. The following Table shows the various isocyanates employed and the LC & MS data for the final products.
Table 3
Figure imgf000042_0002
Example 17
Parallel Synthesis of 3-{4-[2-(4,5-dihydroimidazoIe-2-ylamino)-ethoxy]-2- hydroxy-benzoylamino}-propionic acid 2-ureas (I)
Figure imgf000043_0001
These compounds were prepared by following the procedures detailed in examples 1-7 and 9, but for example 3, wherein the chloroformates were replaced by isocyanates. The following Table 4 shows the various isocyanates employed and the LC & MS data for the final products.
Table 4
Figure imgf000043_0002
Example 18
Parallel Synthesis of 3-{2-hydroxy-4-[2-(l,4,5,6-tetrahydropyrimidin-2- ylamino)-ethoxy]benzoylamino}-propionic acid 2-ureas (I)
Figure imgf000044_0001
These compounds were prepared by following the procedures detailed in examples 1-4 and 15, but for example 3, wherein the chloroformates were replaced by isocyanates. The following Table 5 shows the various isocyanates employed and the LC & MS data for the final products.
Table 5
Figure imgf000044_0002
Example 19 Parallel Synthesis of 3-[4-(2-guanidinoethoxy)-2-hydroxy-benzoylamino]- propionic acid 2- amides (I)
Figure imgf000045_0001
These compounds were prepared by following the procedures detailed in examples 1-8, but for example 3, wherein the following modified procedure was used.
Modified Procedure:
The resin prepared according to the example 2 was placed in the reaction vessel (750 mg per vessel; 0.75 mmol). The resin in each vessel was swollen with DMF. A solution of appropriate carboxylic acid (1.5 mmole) in DMF was mixed with diisopropylcarbodiimide (189 mg; 1.5 mmole), hydroxybenzotriazole (202.5 mg; 1.5 mmole) and dimethylaminopyridine (18.33 mg; 0.15 mmole) and the mixture was added each reaction vessel. The reaction vessels were shaken at room temperature for 16h. The mixtures were filtered and the resin in each vessel was washed with dimethylformamide (4 x 4 mL), methanol (4 x mL) and dichloromethane (4 x 4 mL). The resins were dried under vacuum. A sample of resin from each vessel was removed and subjected to Kaiser Ninhydrin test. If the test showed the presence of free amine (resin turned blue) the coupling described above was repeated. Table 6 shows the various carboxylic acids employed and the LC & MS data for the final products. Example 20
Parallel Synthesis of 3-{4-[2-(4,5-dihydroimidazole-2-ylamino)-ethoxy]-2- hydroxy-benzoylamino}-propionic acid 2-amides (I)
Figure imgf000046_0001
These compounds were prepared by following the procedures detailed in examples 1-7 and 9, but for example 3, wherein the above modified procedure was used. Table 6 shows the various carboxylic acids employed and the LC & MS data for the final products.
Example 21
Parallel Synthesis of 3-{2-hydroxy-4-[2-(l,4,5,6-tetrahydropyrimidin-2- ylamino)-ethoxy]benzoylamino}-propionic acid 2-amides (I)
Figure imgf000046_0002
These compounds were prepared by following the procedures detailed in examples 1-4 and 15, but for example 3, wherein the above modified procedure was used. Table 6 shows the various carboxylic acids employed and the LC & MS data for the final products.
Table 6 LC & MS data for various N-substituted Amides
Figure imgf000047_0001
Table 6 (continued) LC & MS data for various N-substituted Amides
Figure imgf000048_0001
Example 22
Parallel Synthesis of 2-Benzyloxycarbonylamino-3-(2-{4-[2-(3-benzylureido)- ethyl]-piperazin-l-yl}acetylamino)-propionic acid
Figure imgf000049_0001
The compound was prepared by following the procedures detailed in examples
1-4, 6,7 and 11, but for example 6, wherein the 4-[(2-fluorenylmethyloxycarbonyl- amino)-ethoxy]-2-hydroxybenzoic acid was substituted by Fmoc-4-(2-aminoethyl)-l- carboxymethyl-piperazine (Neosystem Lab). The purified product was characterized by MS: 541 (M+H); LC: 3.55 min; 99% @ 220 nm. IH MNR: (DMSO-d6 + D2O): d: 7.2-7.5 (m, 10H), 5.1 (s, 2H), 4.3 (s, 2H), 4.2 (q, IH), 3.6 (m, IH), 3.45-3.55 (m, 3H), 3.25-3.35 (m, 6H), 3.1 (t, 2H), 2.9 (br, 4H).
Example 23 Parallel Synthesis of 2-Benzyloxycarbonylamino-3-(2-{4-[2-(3-benzylureido)- ethyI]-2,4-dioxo-3,4-dihydro-2H-quinazolin- l-yl}acetylamino)-propionic acid
Figure imgf000049_0002
The compound was prepared by following the procedures detailed in examples 1-4, 6,7 and 11, but for example 6, wherein the 4-[(2-fluorenylmethyloxycarbonyl- amino)-ethoxy]-2-hydroxybenzoic acid was substituted by Fmoc-4-(2-aminoethyl)-l- carboxymethyl-quinazoline-2,4-dione (Neosystem Lab). The purified product was characterized by MS: 617 (M+H); LC: 4.41 min; 98% @ 220 nm.
IH MNR: (DMSO-d6 + D2O): d: 8.05 (dd, IH), 7.6 (t, IH), 7.2-7.4 (m, 10H), 7.0 (t, 2H) 5.0 (s, 2H), 4.7 (m, 2H), 3.8-4.0 (m, 4H), 3.45 (m, IH), 3.25-3.35 (m, 4H).
The compounds of the present invention can be used in the form of salts derived from pharmaceutically or physiologically acceptable acids or bases. These salts include, but are not limited to, salts with inorganic acids such as hydrochloric acid, sulfuric acid, nitric acid, phosphoric acid and salts with organic acids such as acetic acid, oxalic acid, succinic acid, and maleic acid. Other salts include salts with alkali metals or alkaline earth metals, such as sodium, potassium, calcium or magnesium. The compounds of the present invention can also be used in the form of esters at the C-terminus; carbamates, amides and the like at the N-terminus or other conventional ϊpro-drug! forms which, when administered, convert to the active moiety in vivo. Compounds of the present invention may be administered in combination with one or more pharmaceutically acceptable carriers, for example, solvents, diluents and the like. Solid carriers include starch, lactose, dicalcium phosphate, microcrysta-lline cellulose, sucrose and kaolin, while liquid carriers include sterile water, polyethylene glycols, non-ionic surfactants and edible oils such as corn, peanut and sesame oils. Adjuvants customarily employed in the preparation of pharmaceutical compositions may be advantageously included, such as flavoring agents, coloring agents, preserving agents, and antioxidants, for example, vitamin E, ascorbic acid, BHT and BHA. These compounds may be administered orally as well as by intravenous, intramuscular, or subcutaneous routes. When administered orally in such forms as tablets, capsules, dispersible powders, granules, or suspensions, formulations may contain, for example, from about 0.05 to 5% of suspending agent, syrups containing, for example, from about 10 to 50% of sugar, or elixirs containing, for example, from about 20 to 50% ethanol, and the like. When administration is parenterally, formulation may be, for example, sterile injectable solutions or suspensions containing from about 0.05 to 5% suspending agent in an isotonic medium. Such pharmaceutical preparations may contain, for example, from about 25 to about 90% by weight of active ingredient in combination with a carrier, and more preferably between about 5% and 60% by weight of active ingredient.
The preferred pharmaceutical compositions from the standpoint of ease of preparation and administration are solid compositions, particularly tablets and hard- filled or liquid-filled capsules. Oral administration of the compounds is preferred.
The dosage requirements can be determined by one skilled in the art and will vary with the particular composition employed, the route of administration, the severity of the symptoms presented and the particular subject being treated. However, in general, satisfactory results are obtained when compounds of the invention are administered at a daily dosage of from about 0.5 to about 500 mg/kg of animal body weight, preferably given in divided doses two to four times a day, or in a sustained release form. Preferably, the total daily dosage is from about 1 to about 100 mg, preferably about 2 to about 80 mg. Dosage forms suitable for internal use comprise from about 0.5 to 500 mg of active compound in intimate admixture with solid or liquid pharmaceutically acceptable carrier.

Claims

We Claim: 1. A compound having the formula
Figure imgf000052_0001
(I) wherein:
Figure imgf000052_0002
R. and R2 independently are optionally substituted alkyl of 1-8 carbon atoms, optionally substituted alkenyl of 2-8 carbon atoms, optionally substituted alkynyl of 2-8 carbon atoms, optionally substituted cycloalkyl of 3-12 carbon atoms, optionally substituted aryl, optionally substituted aralkyl of 6-10 carbon atoms, optionally substituted aralkenyl of 6-10 carbon atoms, optionally substituted heterocycloalkyl of 5-10 members consisting of carbon atoms and from 1-3 heteroatoms selected from N, S and O, optionally substituted heterocycloalkyl-alkyl where the heterocycloalkyl has 5-10 members consisting of carbon atoms and from 1-3 heteroatoms selected from N, S and O, and the alkyl has 1-8 carbon atoms, optionally substituted heteroalkyl- alkenyl where the heteroalkyl has 5-10 members consisting of carbon atoms and from 1-3 heteroatoms selected from N, S and O and the alkenyl has 1-8 carbon atoms.
R3 is H, optionally substituted alkyl of 1-6 carbon atoms, optionally substituted aralkoxy of 1-6 carbon atoms; X is NHCOO, NHCO, NHCONH, NHSO2; Y is CH2, NH; Z is CH, N, S; m is 0-4; and n is 0-3; or pharmaceutical salts thereof, with the proviso that when W is
Figure imgf000053_0001
2. A compound of Claim 1 wherein RI is methyl, ethyl, n-propyl, i-propyl, allyl, homoallyl, propargyl, pentyl, neopentyl, n-hexyl, octyl, neopentyl, trichloroethyl, n-butyl, i-butyl, butynyl, phenyl, methylphenyl, dimethylphenyl, halophenyl, methoxyphenyl, acetylphenyl, biphenyl, naphthyl, benzyl, phenethyl, cyclohexyl, cyclohexylmethyl, trimethylcyclopropyl, phenylcyclopropyl, adamantyl, adamantylmethyl, cinnamic, pyridyl, or dimethylfuran.
3. A compound according to claim 1 which is 2-benzyloxycarbonyl- amino-3-(2-{4-[2-(3-benzylureido)-ethyl]-piperazin-l-yl}acetylamino)-propionic acid or a pharmaceutically acceptable salt thereof.
4. A compound according to claim 1 which is 2-benzyloxycarbonylamino- 3-(2-{4-[2-(3-benzylureido)-ethyl]-2,4-dioxo-3,4-dihydro-2H-quinazolin-l- yl}acetylamino)-propionic acid or a pharmaceutically acceptable salt thereof.
5. A combinatorial library comprising a plurality of different compounds, each compound covalently linked to sohd support P, according to the formula
Figure imgf000053_0002
(I) wherein:
Figure imgf000054_0001
Rj and R, independently are optionally substituted alkyl of 1-8 carbon atoms, optionally substituted alkenyl of 2-8 carbon atoms, optionally substituted alkynyl of 2-8 carbon atoms, optionally substituted cycloalkyl of 3-12 carbon atoms, optionally substituted aryl, optionally substituted aralkyl of 6-10 carbon atoms, optionally substituted aralkenyl of 6-10 carbon atoms, optionally substituted heterocycloalkyl of 5-10 members consisting of carbon atoms and from 1-3 heteroatoms selected from N, S and O, optionally substituted heterocycloalkyl-alkyl where the heterocycloalkyl has 5-10 members consisting of carbon atoms and from 1-3 heteroatoms selected from N, S and O, and the alkyl has 1-8 carbon atoms, optionally substituted heteroalkyl-alkenyl where the heteroalkyl has 5-10 members consisting of carbon atoms and from 1-3 heteroatoms selected from N, S and O and the alkenyl has 1-8 carbon atoms.
R3 is H, optionally substituted alkyl of 1-6 carbon atoms, optionally substituted aralkoxy of 1-6 carbon atoms; X is NHCOO, NHCO, NHCONH, NHSO2; Y is CH,, NH; Z is CH, N, S m is 0-4; and n is 0-3; or pharmaceutical salts thereof.
6. A combinatorial library according to claim 4 wherein each of said compounds is prepared by the method which comprises: a) attaching a β-amino acid of the formula
Figure imgf000055_0001
to a solid support P to produce a compound of formula (1)
Figure imgf000055_0002
(1) b) deblocking the fluorenylmethyloxy carbonyl group of said compound of formula (1) with piperidine to produce a compound of formula (2)
Figure imgf000055_0003
c) acylating said compound of formula (2) with a chemical species selected from chloroformates, isocyanates, sulfonyl chlorides, carboxylic acid chlorides or carboxylic acids to produce a compound of formula (3)
Figure imgf000055_0004
(3)
d) deblocking the 4,4-dimethyl-2,6-dioxocylohex-l-ylideneethyl protecting group of said compound of formula (3) with hydrazine to produce a compound of formula (4)
Figure imgf000055_0005
(4) e) reacting said compound of formula (4) with a Fmoc protected amino carboxylic acid of formula (5)
O FmocHN.wΛOH
(5) to produce a compound of formula (6)
Figure imgf000056_0001
(6)
f) deblocking the fluorenylmethyloxy carbonyl group of said compound of formula (6) with piperidine to produce a compound of formula (7)
Figure imgf000056_0002
(7)
g) reacting said compound of formula (7) with guanidilation reagents of formula (8) or (9) or (10) or amidation reagent of formula (11)
Figure imgf000056_0003
(8) (9) (10) (11) to produce a compound of formula (12)
Figure imgf000056_0004
(12) wherein
Figure imgf000056_0005
h) reacting said compound of formula (7) with isocyanates or with p-nitrophenyl chloroformate, followed by amine to produce a compound of formula (12)
Figure imgf000057_0001
(12) wherein
Figure imgf000057_0002
i) reacting said compound of formula (12) with a cleaving reagent to produce a compound of formula (I).
7. A combinatorial library according to claim 6 wherein the solid support P is polystyrene crosslinked with divinylbenzene and functionalized with a linker such as hydroxymethylphenoxy.
8. A combinatorial library according to claim 4 wherein the solid support P is Wang resin.
9. A method for the solid phase synthesis of compounds of formula
Figure imgf000057_0003
(I) wherein:
Figure imgf000057_0004
Figure imgf000058_0001
Rj and R, independently are optionally substituted alkyl of 1-8 carbon atoms, optionally substituted alkenyl of 2-8 carbon atoms, optionally substituted alkynyl of 2-8 carbon atoms, optionally substituted cycloalkyl of 3-12 carbon atoms, optionally substituted aryl, optionally substituted aralkyl of 6-10 carbon atoms, optionally substituted aralkenyl of 6-10 carbon atoms, optionally substituted heterocycloalkyl of 5-10 members consisting of carbon atoms and from 1-3 heteroatoms selected from N, S and O, optionally substituted heterocycloalkyl-alkyl where the heterocycloalkyl has 5-10 members consisting of carbon atoms and from 1-3 heteroatoms selected from N, S and O, and the alkyl has 1-8 carbon atoms, optionally substituted heteroalkyl-alkenyl where the heteroalkyl has 5-10 members consisting of carbon atoms and from 1-3 heteroatoms selected from N, S and O and the alkenyl has 1-8 carbon atoms.
R3 is H, alkyl of 1-6 carbon atoms, aralkoxy of 1-6 carbon atoms; X is NHCOO, NHCO, NHCONH, NHSO2; Y is CH,, NH; Z is CH, N, S m is 0-4; and n is 0-3; or pharmaceutical salts thereof, comprising the steps: a) attaching a β-amino acid of the formula
Figure imgf000058_0002
to a solid support P to produce a compound of formula (1)
Figure imgf000058_0003
b) deblocking the fluorenylmethyloxy carbonyl group of said compound of formula (1) with piperidine to produce a compound of formula (2)
Figure imgf000059_0001
(2) c) acylating said compound of formula (2) with a chemical species selected from chloroformates, isocyanates, sulfonyl chlorides, carboxylic acid chlorides or carboxylic acids to produce a compound of formula (3)
Figure imgf000059_0002
(3) d) deblocking the 4,4-dimethyl-2,6-dioxocylohex- 1 -ylideneethyl protecting group of said compound of formula (3) with hydrazine to produce a compound of formula (4)
Figure imgf000059_0003
(4)
e) reacting said compound of formula (4) with a Fmoc protected amino carboxylic acid of formula (5)
O FmocHN-w OH
(5) to produce a compound of formula (6)
Figure imgf000059_0004
(6) f) deblocking the fluorenylmethyloxy carbonyl group of said compound of formula (6) with piperidine to produce a compound of formula (7)
Figure imgf000060_0001
(7) g) reacting said compound of formula (7) with guanidilation reagents of formula (8) or (9) or (10) or amidation reagent of formula (11)
Figure imgf000060_0002
(8) (9) (10) (11) to produce a compound of formula (12)
Figure imgf000060_0003
(12) wherein
Figure imgf000060_0004
h) reacting said compound of formula (7) with isocyanates or with p- nitrophenyl chloroformate, followed by amine to produce a compound of formula (11)
Figure imgf000060_0005
(12) wherein O
G = Rl N^ H '
i) reacting said compounds of formula (12) with a cleaving reagent to produce a compound of formula (I).
10. The method according to claim 9 wherein the solid support used is polystyrene crosslinked with divinylbenzene and functionalized with a linker such as hydroxymethylphenoxy group.
11. The method according to claim 9 wherein the solid support used is Wang resin.
12. The method of Claim 9 wherein the cleaving reagent is trifluoroacetic acid.
13. A pharmaceutical composition comprising a compound of Claim 1 and at least one pharmaceutically acceptable carrier.
14. A method of treating an affliction in a mammal that is mediated on integrin receptors, which comprises administering to the afflicted mammal a compound of the formula
Figure imgf000061_0001
(I) wherein:
Figure imgf000061_0002
Figure imgf000062_0001
R, and R2 independently are optionally substituted alkyl of 1-8 carbon atoms, optionally substituted alkenyl of 2-8 carbon atoms, optionally substituted alkynyl of 2-8 carbon atoms, optionally substituted cycloalkyl of 3-12 carbon atoms, optionally substituted aryl, optionally substituted aralkyl of 6-10 carbon atoms, optionally substituted aralkenyl of 6-10 carbon atoms, optionally substituted heterocycloalkyl of 5-10 members consisting of carbon atoms and from 1 to 3 heteroatoms selected from N, S and O, optionally substituted heterocycloalkyl-alkyl where the heterocycloalkyl has 5-10 members consisting of carbon atoms and from 1-3 heteroatoms selected from N, S and O, and the alkyl has 1-8 carbon atoms, optionally substituted heteroalkyl-alkenyl where the heteroalkyl has 5-10 members consisting of carbon atoms and from 1-3 heteroatoms selected from N, S and O and the alkenyl has 1-8 carbon atoms.
R3 is H, optionally substituted alkyl of 1-6 carbon atoms, optionally substituted aralkoxy of 1-6 carbon atoms; X is NHCOO, NHCO, NHCONH, NHSO2; Y is CH2, NH; Z is CH, N, S; m is 0-4; and n is 0-3; or pharmaceutical salts thereof, with the proviso that when W is
Figure imgf000062_0002
Figure imgf000063_0001
15. A method as claimed in Claim 14 wherein the integrin receptor is αvβ3.
16. A method as claimed in Claim 14 wherein the affliction is cancer, cancer metastasis, solid tumor growth, tumor metastasis, angiogenesis, neovascularization, macular degeneration, glaucoma, blindness, rheumatoid arthritis, restenosis, smooth cell migration, smooth cell proliferation, vascular endothelial cell proliferation, vascular endothelial cell migration, viral infection (characterized by bone resorption of mineralized tissues), osteoporosis, hypercalcemia of malignancy, osteopenia due to bone metastasis, periodontal disease, hyperparathyroidism, periarticular erosions in rheumatoid arthritis, Paget's disease, immobilization-induced osteopenia or glucocorticoid treatment, or is characterized by some resorption of mineralised tissues.
17. A compound as claimed in any one of Claims 1 to 4 for use as a medicament.
18. Use of a compound as claimed in any one of Claims 1 to 4 for the manufacture of a medicament for the treatment of an affliction in a mammal that is mediated on integrin receptors.
19. Use of a compound as claimed in any one of Claims 1 to 4 for the manufacture of a medicament for the treatment of an affliction in a mammal that is mediated on an integrin receptor wherein the receptor is αvβ3.
20. Use of a compound as claimed in any one of Claims 1 to 4 for the manufacture of a medicament for the treatment of an affliction wherein the affliction is cancer, cancer metastasis, solid tumor growth, tumor metastasis, angiogenesis, neovascularization, macular degeneration, glaucoma, blindness, rheumatoid arthritis, restenosis, smooth cell migration, smooth cell proliferation, vascular endothelial cell proliferation, vascular endothelial cell migration, viral infection (characterized by bone resorption of mineralized tissues), osteoporosis, hypercalcemia of malignancy, osteopenia due to bone metastasis, periodontal disease, hyperparathyroidism, periarticular erosions in rheumatoid arthritis, Paget's disease, immobilization-induced osteopenia or glucocorticoid treatment, or is characterized by some resorption of mineralised tissues.
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WO1997008145A1 (en) * 1995-08-30 1997-03-06 G.D. Searle & Co. Meta-guanidine, urea, thiourea or azacyclic amino benzoic acid derivatives as integrin antagonists
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Cited By (5)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
WO2002024697A1 (en) * 2000-09-25 2002-03-28 Toray Industries, Inc. Spiro compounds and adhesion molecule inhibitors containing the same as the active ingredient
US6919349B2 (en) 2000-09-25 2005-07-19 Toray Industries, Inc. Spiro compounds and adhesion molecule inhibitors containing the same as the active ingredient
US6818659B2 (en) 2001-11-06 2004-11-16 Bristol-Myers Squibb Pharma, Inc. (2S)-2-amino-4-(2-amino-(3,4,5,6-tetrahydropyrimidin-4-yl) butanoyl and its use in cyclic and acyclic peptides
WO2008009655A3 (en) * 2006-07-17 2008-05-29 Univ Muenster Wilhelms Medical use of n-phenylpropenoyl-amino acid derivatives and related compounds
US11426473B2 (en) 2013-09-24 2022-08-30 Fujifilm Corporation Nitrogen-containing compound or salt thereof, or metal complex thereof

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