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WO1999039174A3 - An automatic method of classifying molecules - Google Patents

An automatic method of classifying molecules Download PDF

Info

Publication number
WO1999039174A3
WO1999039174A3 PCT/IL1999/000057 IL9900057W WO9939174A3 WO 1999039174 A3 WO1999039174 A3 WO 1999039174A3 IL 9900057 W IL9900057 W IL 9900057W WO 9939174 A3 WO9939174 A3 WO 9939174A3
Authority
WO
WIPO (PCT)
Prior art keywords
molecules
automatic method
classifying
clusters
hierarchical organization
Prior art date
Application number
PCT/IL1999/000057
Other languages
French (fr)
Other versions
WO1999039174A2 (en
Inventor
Michal Linial
Nathan Linial
Naftali Tishby
Golan Yona
Original Assignee
Yissum Res Dev Co
Michal Linial
Nathan Linial
Naftali Tishby
Golan Yona
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Yissum Res Dev Co, Michal Linial, Nathan Linial, Naftali Tishby, Golan Yona filed Critical Yissum Res Dev Co
Priority to AU22970/99A priority Critical patent/AU2297099A/en
Priority to JP2000529585A priority patent/JP2002502064A/en
Priority to EP99902797A priority patent/EP1053460A4/en
Publication of WO1999039174A2 publication Critical patent/WO1999039174A2/en
Publication of WO1999039174A3 publication Critical patent/WO1999039174A3/en

Links

Classifications

    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N15/00—Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
    • C12N15/09—Recombinant DNA-technology
    • C12N15/10—Processes for the isolation, preparation or purification of DNA or RNA
    • C12N15/1034—Isolating an individual clone by screening libraries
    • C12N15/1089—Design, preparation, screening or analysis of libraries using computer algorithms
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids

Landscapes

  • Chemical & Material Sciences (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Engineering & Computer Science (AREA)
  • Organic Chemistry (AREA)
  • Health & Medical Sciences (AREA)
  • Zoology (AREA)
  • General Engineering & Computer Science (AREA)
  • Wood Science & Technology (AREA)
  • Genetics & Genomics (AREA)
  • Biotechnology (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Physics & Mathematics (AREA)
  • General Health & Medical Sciences (AREA)
  • Molecular Biology (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Biomedical Technology (AREA)
  • Microbiology (AREA)
  • Analytical Chemistry (AREA)
  • Biophysics (AREA)
  • Biochemistry (AREA)
  • Bioinformatics & Computational Biology (AREA)
  • Crystallography & Structural Chemistry (AREA)
  • Plant Pathology (AREA)
  • Immunology (AREA)
  • Information Retrieval, Db Structures And Fs Structures Therefor (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
  • Saccharide Compounds (AREA)
  • Other Investigation Or Analysis Of Materials By Electrical Means (AREA)

Abstract

The present invention relates to an automatic method of classifying molecules having similar biologic function comprising the steps of: a) creating a hierarchical organization of said molecules in a database, wherein groups of clusters are identified using local consideration resulting in related clusters; b) determining the position of a selected molecule based on the hierarchical organization of step a, whereby selected molecules of similar biologic function are classified.
PCT/IL1999/000057 1998-01-29 1999-01-29 An automatic method of classifying molecules WO1999039174A2 (en)

Priority Applications (3)

Application Number Priority Date Filing Date Title
AU22970/99A AU2297099A (en) 1998-01-29 1999-01-29 An automatic method of classifying molecules
JP2000529585A JP2002502064A (en) 1998-01-29 1999-01-29 Automatic method of classifying molecules
EP99902797A EP1053460A4 (en) 1998-01-29 1999-01-29 An automatic method of classifying molecules

Applications Claiming Priority (2)

Application Number Priority Date Filing Date Title
US7297798P 1998-01-29 1998-01-29
US60/072,977 1998-01-29

Publications (2)

Publication Number Publication Date
WO1999039174A2 WO1999039174A2 (en) 1999-08-05
WO1999039174A3 true WO1999039174A3 (en) 1999-10-07

Family

ID=22110954

Family Applications (1)

Application Number Title Priority Date Filing Date
PCT/IL1999/000057 WO1999039174A2 (en) 1998-01-29 1999-01-29 An automatic method of classifying molecules

Country Status (4)

Country Link
EP (1) EP1053460A4 (en)
JP (1) JP2002502064A (en)
AU (1) AU2297099A (en)
WO (1) WO1999039174A2 (en)

Families Citing this family (7)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
KR100431620B1 (en) * 2002-02-28 2004-05-17 주식회사 이즈텍 A system for analyzing dna-chips using gene ontology, and a method thereof
JP5007803B2 (en) * 2007-03-09 2012-08-22 独立行政法人農業生物資源研究所 Gene clustering apparatus, gene clustering method and program
JP5278388B2 (en) * 2010-07-06 2013-09-04 ソニー株式会社 Visualization method, visualization apparatus, and information storage medium related to biological material information
WO2014197997A1 (en) * 2013-06-14 2014-12-18 University Of Guelph Systems, methods, and computer program products for merging a new nucleotide or amino acid sequence into operational taxonomic units
EP3767629A4 (en) * 2018-03-16 2022-01-19 KOTAI Biotechnologies, Inc. EFFICIENT GROUPING OF IMMUNOLOGICAL ENTITIES
JP6500144B1 (en) * 2018-03-28 2019-04-10 Ｋｏｔａｉバイオテクノロジーズ株式会社 Efficient clustering of immune entities
CN112988698B (en) * 2019-12-02 2024-09-17 阿里巴巴集团控股有限公司 Data processing method and device

Non-Patent Citations (4)

* Cited by examiner, † Cited by third party
Title
ALTSCHUL S F, ET AL.: "ISSUES IN SEARCHING MOLECULAR SEQUENCE DATABASES", NATURE GENETICS., NATURE PUBLISHING GROUP, NEW YORK, US, vol. 06, 1 February 1994 (1994-02-01), NEW YORK, US, pages 119 - 129 + 125B + 126D, XP002920457, ISSN: 1061-4036, DOI: 10.1038/ng0294-119 *
GOTOH O: "OPTIMAL ALIGNMENT BETWEEN GROUPS OF SEQUENCES AND ITS APPLICATION TO MULTIPLE SEQUENCE ALIGNMENT", CABIOS COMPUTER APPLICATIONS IN THE BIOSCIENCES., IRL PRESS,OXFORD., GB, vol. 09, no. 03, 1 January 1993 (1993-01-01), GB, pages 361 - 370, XP002920458, ISSN: 0266-7061 *
LIPMAN D J, PEARSON W R: "RAPID AND SENSITIVE PROTEIN SIMILARITY SEARCHES", SCIENCE, AMERICAN ASSOCIATION FOR THE ADVANCEMENT OF SCIENCE, US, vol. 227, 1 March 1985 (1985-03-01), US, pages 1435 - 1441, XP002920456, ISSN: 0036-8075, DOI: 10.1126/science.2983426 *
See also references of EP1053460A4 *

Also Published As

Publication number Publication date
AU2297099A (en) 1999-08-16
JP2002502064A (en) 2002-01-22
EP1053460A4 (en) 2003-06-04
EP1053460A2 (en) 2000-11-22
WO1999039174A2 (en) 1999-08-05

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