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US20110166380A1 - Derivative compounds of N-6-Trimethy-L-Lysine for therapeutic use - Google Patents

Derivative compounds of N-6-Trimethy-L-Lysine for therapeutic use Download PDF

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US20110166380A1
US20110166380A1 US12/932,940 US93294011A US2011166380A1 US 20110166380 A1 US20110166380 A1 US 20110166380A1 US 93294011 A US93294011 A US 93294011A US 2011166380 A1 US2011166380 A1 US 2011166380A1
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carnitine
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Suresh C. Srivastava
Sant K. Srivastay
Stanley J. Szymanski, Jr.
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    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K31/00Medicinal preparations containing organic active ingredients
    • A61K31/185Acids; Anhydrides, halides or salts thereof, e.g. sulfur acids, imidic, hydrazonic or hydroximic acids
    • A61K31/205Amine addition salts of organic acids; Inner quaternary ammonium salts, e.g. betaine, carnitine
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61PSPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P25/00Drugs for disorders of the nervous system
    • A61P25/08Antiepileptics; Anticonvulsants
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61PSPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P25/00Drugs for disorders of the nervous system
    • A61P25/28Drugs for disorders of the nervous system for treating neurodegenerative disorders of the central nervous system, e.g. nootropic agents, cognition enhancers, drugs for treating Alzheimer's disease or other forms of dementia
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07CACYCLIC OR CARBOCYCLIC COMPOUNDS
    • C07C227/00Preparation of compounds containing amino and carboxyl groups bound to the same carbon skeleton
    • C07C227/38Separation; Purification; Stabilisation; Use of additives
    • C07C227/40Separation; Purification
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07CACYCLIC OR CARBOCYCLIC COMPOUNDS
    • C07C229/00Compounds containing amino and carboxyl groups bound to the same carbon skeleton
    • C07C229/02Compounds containing amino and carboxyl groups bound to the same carbon skeleton having amino and carboxyl groups bound to acyclic carbon atoms of the same carbon skeleton
    • C07C229/04Compounds containing amino and carboxyl groups bound to the same carbon skeleton having amino and carboxyl groups bound to acyclic carbon atoms of the same carbon skeleton the carbon skeleton being acyclic and saturated
    • C07C229/26Compounds containing amino and carboxyl groups bound to the same carbon skeleton having amino and carboxyl groups bound to acyclic carbon atoms of the same carbon skeleton the carbon skeleton being acyclic and saturated having more than one amino group bound to the carbon skeleton, e.g. lysine
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07CACYCLIC OR CARBOCYCLIC COMPOUNDS
    • C07C233/00Carboxylic acid amides
    • C07C233/01Carboxylic acid amides having carbon atoms of carboxamide groups bound to hydrogen atoms or to acyclic carbon atoms
    • C07C233/45Carboxylic acid amides having carbon atoms of carboxamide groups bound to hydrogen atoms or to acyclic carbon atoms having the nitrogen atom of at least one of the carboxamide groups bound to a carbon atom of a hydrocarbon radical substituted by carboxyl groups
    • C07C233/46Carboxylic acid amides having carbon atoms of carboxamide groups bound to hydrogen atoms or to acyclic carbon atoms having the nitrogen atom of at least one of the carboxamide groups bound to a carbon atom of a hydrocarbon radical substituted by carboxyl groups with the substituted hydrocarbon radical bound to the nitrogen atom of the carboxamide group by an acyclic carbon atom
    • C07C233/47Carboxylic acid amides having carbon atoms of carboxamide groups bound to hydrogen atoms or to acyclic carbon atoms having the nitrogen atom of at least one of the carboxamide groups bound to a carbon atom of a hydrocarbon radical substituted by carboxyl groups with the substituted hydrocarbon radical bound to the nitrogen atom of the carboxamide group by an acyclic carbon atom having the carbon atom of the carboxamide group bound to a hydrogen atom or to a carbon atom of an acyclic saturated carbon skeleton
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07BGENERAL METHODS OF ORGANIC CHEMISTRY; APPARATUS THEREFOR
    • C07B2200/00Indexing scheme relating to specific properties of organic compounds
    • C07B2200/05Isotopically modified compounds, e.g. labelled

Definitions

  • This invention relates to the derivative compounds synthesized from N-6-trimethyl-L-lysine (TML), which may be used in the treatment of deficiencies in the TML-carnitine biochemical pathway.
  • TML N-6-trimethyl-L-lysine
  • NCL neuronal ceroid lipofuscinoses
  • modified TML derivatives described should have similar or near-similar results and improved biochemical properties.
  • structural derivatives of TML such as those mentioned in this application, may participate in the same biological processes and have the same and improved biochemical properties.
  • Formulations or encapsulations of the compounds shown in Formulas I-VI may be used for efficient intracellular delivery and as a prodrug of TML to proceed to make endogeneous L-carnitine, and to participate in various metabolic activities in the intermediate steps of L-carnitine biosynthesis pathway. These may be used for better adsorption of modified TML into various tissues such as kidney, liver and brain.
  • the R′, R′′, and aminoacyl groups are expected to hydrolyze inside the cellular media with one or more intracellular esterases to release free TML.
  • Intracellular esterases are known to hydrolyze esters (Ghosh, M. and Mitra, A. K., Effects of 5′-Ester Modification on the Physicochemical Properties and Plasma Protein Binding of 5-Iodo-2′-Deoxyuridine. Pharm. Res., 8, 771-775, 1991).
  • the parent application described the symptoms and common as well as distinct characteristics of the spectrum of NCL group, including the following: Batten Disease, Santavuori disease, Late-Infantile Neuronal Ceroid Lipofuscinoses (LINCL), Speilmeyer-Sjogren disease, Kuf disease, Parry disease, Bernheimer-sammlunglberger syndrome, Bielschowsky amaurotic idiocy, Bielschowsky disease, Jansky-Bielschowsky disease, Mamalberger disease, late infantile amaurotic idiocy, late infantile Batten disease, subacute late infantile neuronal ceroid-lipofuscinosis, Zeman-Dyken-Lake-Santavuori-Savukoski disease.
  • LINCL Late-Infantile Neuronal Ceroid Lipofuscinoses
  • Speilmeyer-Sjogren disease Kuf disease
  • Parry disease Parry disease
  • Bernheimer-Whylberger syndrome Bielschowsky amaurotic idiocy
  • Bielschowsky disease
  • NCL neuronal ceroid lipofuscinoses
  • the clinical course of the NCL's include progressive dementia, seizures, and progressive visual failure (Full text available at http://www.springerlink.com/content/xu2406100j81034w/fulltext.pdf).
  • a ‘yes’ means that the symptom is a characteristic of the disease.
  • a ‘NO’ means that the OMIM synopsis from clearly stated that the specific symptom is NOT characteristic of that particular NCL.
  • An empty space for a particular symptom does not necessarily preclude it from being part of the characteristics of that particular NCL; it was not mentioned specifically in the OMIM synopsis.
  • CLN6 is an LINCL (CLN2) variant.
  • the line of treatment proposed in the parent application is based on administering in the form of a therapeutic agent of very high purity, any of the following to a human being in need thereof: (a) N-6-trimethyl-L-lysine, (b) a prodrug thereof, or (c) a pharmaceutically acceptable salt of said N-6-trimethyl-L-lysine or said prodrug.
  • the one common characteristics in all these disorders has been found to be the accumulation of autofluorescent storage material in all tissues, particularly pronounced in the central nervous system. This characteristic has been tied to the fundamental role of L-carnitine in metabolism, such as the prevention of hyperammonimia, lipid peroxidation and fatty acid metabolism. It has also been found that availability of TML as the rate limiting step in the regulation of feedback inhibition for L-carnitine biosynthesis is crucial to the biosynthesis of L-carnitine. (Schematic 1). (F. M. Vaz and R. J. A. Wandars, Biochem. J., 361, 417-429, 2002).
  • L-carnitine plays an essential role in energy metabolism. In fatty acid metabolism, it serves as shuttle between the cell sap and the mitochondria inner-workings permitting breakdown of the long carbon fragment. A major part of that role is in maintaining a balance between the concentration of a compound called acyl CoA in the cell compartments and in sugar metabolism.
  • L-Carnitine has several roles, most of which involve conjugation of acyl residues to the b-hydroxyl group of the L-carnitine with subsequent translocation of this complex from one cellular compartment to another.
  • Fatty acid oxidation defects encompass a spectrum of clinical disorders, including recurrent hypoglycemic, hypoketotic encephalopathy or Reye-like syndrome in infancy with secondary seizures and potential developmental delay, progressive lipid storage myopathy, recurrent myoglobinuria, neuropathy, and progressive cardiomyopathy.
  • L-carnitine prevents acute ammonia toxicity and enhances the efficacy of ammonia elimination as urea and glutamine. In addition the cytotoxic effects of ammonia, possibly arising from lipid peroxidation, are ameliorated by L-carnitine.
  • L-Carnitine deficiency can be defined as a decrease of intracellular L-carnitine is a factor in inhibition of the mitochondrial oxidation of long-chain fatty acids during fasting causes heart or liver failure (which may cause encephalopathy by hypoketonaemia, hypoglycaemia and hyper-ammonium), lower acetylcholine synthesis in the nervous system.
  • L-carnitine plays a key and critical role in enhancing fat metabolism. Reports attest to the fact that L-carnitine works by transporting fatty acids to be burned for fuel, increasing both energy supply and lean muscle mass. Most found that unless an individual is deficient in L-carnitine, it is an unnecessary ergogenic aid. This contrasts with an apparent need in case of L-carnitine deficiency (e.g., in the case pursued by the inventors of Late Infantile Neuronal Ceroid Lipofuscinosis—one form of Batten Disease), of the correct operation of the endogenous production of L-carnitine. This need was corroborated in the observations of dogs with Batten Disease given exogenous L-Carnitine (Siakotos A.
  • L-Carnitine may be essential or “conditionally” essential for several groups of people including: normal infants, premature infants, and both children and adults suffering from a variety of genetic, infectious, and injury-related illnesses. For example, some cardiomyopathies which afflict children are due to metabolic errors or deficiencies. There is data that supports treatment of some myocardial dysfunctions with L-carnitine supplementation. (Winter, S., Jue, K., Prochazka J., Francis, P., Hamilton, W., Linn, L., Helton, E. (1995) J. Child Neurol. 10, Supple 2: S45-51.)
  • TML or its derivatives which had been proposed in the parent application, can be used for the treatment of a human being diagnosed with one or more of the following: defects in carnitine biosynthesis pathway, inefficiency of endogeneous TML, over-accumulation of TML bound protein at the cellular level, renal failure conditions, hyperammonemic Encepalophathy, over-accumulation of glutamine in the brain, reduced and deficient fatty acid metabolism and shuttling of fatty acid in to mitochondria, insufficient ATP production or subsequent energy production and all the cellular activities associated with this events, defective fatty acid oxidation resulting from carnitine deficiency, hypoglycemia, hypoketotic, encephalopathy, Reye-like syndrome, for recurrent seizures and developmental delay, AIDS or AIDS-like conditions, over-accumulation of lipids causing myopathy, myoglobinuria, neuropathy, cardiomyopathy, ammonia over-production, hyper
  • TML derivatives would be equally or more effective after hydrolysis in cellular environment and liberation of free TML.
  • TML derivate compounds were invented and purified by the team of current inventors. These inventions are listed in the present application.
  • the present invention provides derivative compounds of the biologically active TML compound, which may be used to treat various diseases resulting from deficiencies in the TML-carnitine pathway, such as Late Infantile Neuronal Lipofuscinosis (LINCL) or Neuronal Ceroid Lipofuscinosis (NCL).
  • LINCL Late Infantile Neuronal Lipofuscinosis
  • NCL Neuronal Ceroid Lipofuscinosis
  • the invention provides a compound represented by Formula II:
  • R′ is selected from the group consisting of an alkyl having between 1 and 5 carbon atoms and an aromatic ring.
  • the invention provides a compound represented by Formula III:
  • R′′ is an alkyl having 1 to 5 carbon atoms or CH3.
  • the invention provides a compound represented by Formula IV:
  • R′′ is an alkyl having between 1 and 5 carbon atoms, or CH3 and R′ is an alkyl having between 1 and 5 carbon atoms or an aromatic ring.
  • the invention provides a compound represented by Formula V:
  • a, a′, b, b′; c, c′, d, d′, e, and e′ are independently selected from H, deuterium, and an alkyl having between 1 and 5 carbon atoms; R′ is selected from the group consisting of H, an alkyl having between 1 and 5 carbon atoms and an aromatic ring; and, and each N is independently selected from nitrogen and N15 labeled nitrogen.
  • the invention provides a compound represented by Formula VI:
  • a, b, b′, c, c′, d, d′, e, and e′ are independently selected from H, deuterium, and an alkyl having from 1 to 5 carbon atoms, and each N is independently selected from nitrogen and N15 labeled nitrogen.
  • the invention provides a method of purifying the TML compound represented by Formula I
  • the invention provides a method of purifying the TML derivate compounds represented by Formulas II, III, IV, V, and VI above to at least 98% purity.
  • the method of purifying the TML and TML derivative compounds involves the following steps:
  • the method further involves:
  • the term “derivative” means any of Formulas II-VI.
  • the invention incorporates both TML and TML derivatives. As such, any mention of TML also encapsulates the TML derivative compounds.
  • a chain such as an alkyl
  • Reference to a chain can mean either the branched or unbranched chain unless otherwise noted.
  • alkyl means either a branched or unbranched alkyl chain, and includes, for example, methyl, ethyl, n-propyl, isopropyl, n-butyl, sec-butyl, isobutyl, tert-butyl, n-pentyl, and the like.
  • dilute means ten percent or less in solution.
  • a “mild base,” as used herein, means a dilute base.
  • phrases “pharmaceutically acceptable” indicates that the designated carrier, vehicle, diluent, excipient(s), and/or salt must be chemically and/or physically compatible with the other ingredients comprising the Formulation, and physiologically compatible with the recipient thereof.
  • the invention provides a compound represented by Formula II:
  • R′ is selected from an alkyl having between 1 and 5 carbon atoms and an aromatic ring.
  • the invention provides a compound represented by Formula III:
  • R′′ is selected from an alkyl having between 1 and 5 carbon atoms, and an aromatic ring.
  • the invention provides a compound represented by Formula IV:
  • R′ is selected from an alkyl having between 1 and 5 carbon atoms
  • CH3 and R′′ is selected from an alkyl having between 1 and 5 carbon atoms, and an aromatic ring.
  • the invention provides a compound represented by Formula V:
  • a, a′, b, b′, c, c′, d, d′, e, and e′ are independently selected from H, deuterium, and an alkyl having between 1 and 5 carbon atoms and R′ is selected from H, an alkyl having between 1 and 5 carbon atoms, or an aromatic ring.
  • each N is independently selected from nitrogen or N15 labeled nitrogen.
  • the reaction mixture was cooled to room temperature and filtered with Whatman 3MM paper.
  • the clear filtrate was mixed with dimethylsulfate, 100 mL (1.055 mol) at room temperature, after which 325 mL of aq. sodiumhydroxide solution (10% aq.; 1.055 mol; w/v, in dd water) was added drop-wise during 30 minutes, then stirred at room temperature for 60 min.
  • the column was copiously washed with 500 mL of distilled water. This process was repeated with 1700 mL water and 1000 mL and 700 mL fractions were collected. The collection and monitoring of these fractions were accomplished by thing layer chromatography (TLC) and ninhydrin color tests.
  • TLC thing layer chromatography
  • the eight fractions were combined and evaporated to yield an oil.
  • the oil was subsequently lyophilized at room temperature to yield a solid.
  • the solid was triturated in acetonitrile and filtered and washed with acetonitrile again.
  • the solid was dissolved in methanol/water (95:5::Methanol:ddWater) and filtered with glass micro filter paper and the filtrate was evaporated and lyophilized.
  • the following steps may include:
  • the TML synthesized (as described above) had no external salt.
  • the carboxylic group (which is negatively charged) and the trimethyl group (which is positively charged) form an internal salt.
  • the alpha amino group picks up the proton from the ionized carboxylic group.
  • the molecular weight of this TML is 188.3 From our Mass Spectral analysis (positive ion) we get the molecular ion peak at 189.28 (One extra mass in positive ion is proton adding from matrix). This data confirms MW of 188.3.
  • TML can exist as an external salt as well, such as a potassium salt.

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Abstract

The invention provides derivative compounds of N-6-trimethyl-L-lysine (TML) for potential treatment of disorders resulting from deficiencies in the TML-carnitine pathway. The invention also provides a method of purification of TML and TML derivative compounds. The treatment of conditions of the diseases late infantile neuronal ceroid lipofuscinosis (LINCL) and neuronal ceroid lipofuscinosis (NCL) with TML were shown in the original parent application.

Description

    CROSS-REFERENCE TO RELATED APPLICATIONS
  • This is a division of application Ser. No. 11/105,165, filed Apr. 13, 2005, which claims priority from provisional application No. 60/601,095 filed on Aug. 12, 2004, and incorporates the subject matter identified as Inventions II and IV in the Requirement for Restriction/Election of Apr. 13, 2007, in the parent application. All materials referenced in the prior provisional and non-provisional applications are hereby incorporated by reference. This includes, but is not limited to, all specifications, drawings, and like materials.
  • Related divisional applications claiming similar priority include “Method of Synthesis and Purification of N-6-Trimethyl-L-Lysine and Derivative Compounds,” Attorney Docket Attorney Docket No. ChG00111; “Method of Treating Human Being for a Class of Metabolic Defects and Energy Production Disorders,” Attorney Docket No. ChG00113; and “Method of Treating a Human Being for a Class of Neurological Defects and Seizure Disorders,” Attorney Docket No. ChG00114.
  • All books, manuals, articles, and papers that are cited herein are hereby incorporated by reference in their entirety.
  • BACKGROUND OF THE INVENTION
  • 1. Field of Invention
  • This invention relates to the derivative compounds synthesized from N-6-trimethyl-L-lysine (TML), which may be used in the treatment of deficiencies in the TML-carnitine biochemical pathway.
  • 2. Description of Related Art
  • All material referenced in the prior provisional and non-provisional applications are hereby incorporated by reference.
  • In the parent application Ser. No. 11/105,165, allowed on Nov. 17, 2010 to issue as a patent, it was shown by carefully compiled experimental results and other scientific demonstration, that therapeutic use of TML may successfully arrest, and in certain respects, reverse the degeneration associated with the group of progressive neurological diseases called neuronal ceroid lipofuscinoses (NCL).
  • The modified TML derivatives described should have similar or near-similar results and improved biochemical properties. One of ordinary skill in the art would recognize that structural derivatives of TML, such as those mentioned in this application, may participate in the same biological processes and have the same and improved biochemical properties.
  • Formulations or encapsulations of the compounds shown in Formulas I-VI may be used for efficient intracellular delivery and as a prodrug of TML to proceed to make endogeneous L-carnitine, and to participate in various metabolic activities in the intermediate steps of L-carnitine biosynthesis pathway. These may be used for better adsorption of modified TML into various tissues such as kidney, liver and brain. The R′, R″, and aminoacyl groups are expected to hydrolyze inside the cellular media with one or more intracellular esterases to release free TML. Intracellular esterases are known to hydrolyze esters (Ghosh, M. and Mitra, A. K., Effects of 5′-Ester Modification on the Physicochemical Properties and Plasma Protein Binding of 5-Iodo-2′-Deoxyuridine. Pharm. Res., 8, 771-775, 1991).
  • The parent application described the symptoms and common as well as distinct characteristics of the spectrum of NCL group, including the following: Batten Disease, Santavuori disease, Late-Infantile Neuronal Ceroid Lipofuscinoses (LINCL), Speilmeyer-Sjogren disease, Kuf disease, Parry disease, Bernheimer-Seitelberger syndrome, Bielschowsky amaurotic idiocy, Bielschowsky disease, Jansky-Bielschowsky disease, Seitelberger disease, late infantile amaurotic idiocy, late infantile Batten disease, subacute late infantile neuronal ceroid-lipofuscinosis, Zeman-Dyken-Lake-Santavuori-Savukoski disease.
  • At the genetic level, the neuronal ceroid lipofuscinoses (NCL's) result from mutations in at least eight genes, and these mutations are responsible for causing the various expressions of the neurodegenerative diseases collectively identified as NCLs. A summary background of these mutations and a survey of the background reference literature were given in the parent application. See Table A by Gene Locus.
  • TABLE A
    Neuronal Ceroid Lipofuscinosis-Summary of Symptoms
    CLN1 (Infantile)
    CLN2 (Late Infantile)
    CLN3 (Juvenile)
    CLN4a (Kufs Disease)
    CLN5 (Late Infantile, Finnish Variant)
    CLN6 (Late Infantile, Variant, Included, Variable age at onset)
    CLN7
    CLN8
    CLN8 (Northern Epilepsy Variant)
    CLN9
    CLN 10 (Cathepsin D-Deficient, Congenital)
    SYMPTOMS CLN1 CLN2 CLN3 CLN4 CLN5 CLN6 CLN7 CLN8 CLN9 CLN10
    Dementia Yes Yes Yes Yes Yes Yes
    Seizures Yes Yes Yes Yes Yes Yes Yes Yes Yes yes
    (hyperknetic
    movements,
    hand/feet
    tremors)
    Progressive Visual Yes Yes Yes Yes Yes Yes Yes No Yes newborn
    Failure infant
    Mental Retardation Yes Yes Yes Yes Yes Yes Yes Yes
    Loss Of Speech Yes Yes Yes Yes Yes Yes yes
    Regression of Yes Yes Yes Yes Yes yes
    Motor
    Development
    Ataxia Yes Yes Yes Yes Yes Yes yes
    Muscular Yes Yes Yes Yes yes
    Hypotonia/Dystonia
    Microcephaly Yes
    Optic Atrophy/ Yes Yes Yes Yes
    Macular
    Degeneration
    Retinitis
    Pigmentosa
    Myoclonus Yes Yes Yes Yes Yes Yes No
    Cerebellar Atrophy Yes Yes Yes Yes yes
    Quadraparesis Yes
    Refractory Epilepsy Yes
    Behavioral Yes Yes
    Involvement
    (Anger Outburst,
    Physical Violence)
    Table A Notes:
    1. According to Mole et al.. 2005, the clinical course of the NCL's include progressive dementia, seizures, and progressive visual failure (Full text available at http://www.springerlink.com/content/xu2406100j81034w/fulltext.pdf).
    2. Obviously, a ‘yes’ means that the symptom is a characteristic of the disease. A ‘NO’ means that the OMIM synopsis from clearly stated that the specific symptom is NOT characteristic of that particular NCL. An empty space for a particular symptom does not necessarily preclude it from being part of the characteristics of that particular NCL; it was not mentioned specifically in the OMIM synopsis. For instance, CLN6 is an LINCL (CLN2) variant. It did not specifically mention Mental Retardation or Loss of Speech or Cerebellar Atrophy; but it would be hard to believe that Mental Retardation/Loss of Speech/Cerebellar would not be part of the continuum.
    3. References
    CLN1 http://www.ncbi.nlm.nih.gov/entrez/dispomim.cgi?id=256730
    CLN2 http://www.ncbi.nlm.nih.gov/entrez/dispomim.cgi?id=204500
    CLN3 http://www.ncbi.nlm.nih.gov/entrez/dispomim.cgi?id=204200
    CLN4a http://www.ncbi.nlm.nih.gov/entrez/dispomim.cgi?id=204300
    CLN5 http://www.ncbi.nlm.nih.gov/entrez/dispomim.cgi?id=256731
    CLN6 http://www.ncbi.nlm.nih.gov/entrez/dispomim.cgi?id=601780
    CLN7 http://www.ncbi.nlm.nih.gov/entrez/dispomim.cgi?id=610951
    CLN8 http://www.ncbi.nlm.nih.gov/entrez/dispomim.cgi?id=600143
    CLN8 (northern epilepsy variant) http://www.ncbi.nlm.nih.gov/entrez/dispomim.cgi?id=610003
    CLN9 http://www.ncbi.nlm.nih.gov/entrez/dispomim.cgi?id=609055
    CLN10 http://www.ncbi.nlm.nih.gov/entrez/dispomim.cgi?id=610127
  • No generally effective treatment for many of the diseases mentioned above is currently available and these diseases are generally fatal. The line of treatment proposed in the parent application, is based on administering in the form of a therapeutic agent of very high purity, any of the following to a human being in need thereof: (a) N-6-trimethyl-L-lysine, (b) a prodrug thereof, or (c) a pharmaceutically acceptable salt of said N-6-trimethyl-L-lysine or said prodrug.
  • The one common characteristics in all these disorders has been found to be the accumulation of autofluorescent storage material in all tissues, particularly pronounced in the central nervous system. This characteristic has been tied to the fundamental role of L-carnitine in metabolism, such as the prevention of hyperammonimia, lipid peroxidation and fatty acid metabolism. It has also been found that availability of TML as the rate limiting step in the regulation of feedback inhibition for L-carnitine biosynthesis is crucial to the biosynthesis of L-carnitine. (Schematic 1). (F. M. Vaz and R. J. A. Wandars, Biochem. J., 361, 417-429, 2002).
  • Figure US20110166380A1-20110707-C00001
  • A summary of the role of carnitine, which was described in greater detail in the parent application, is outlined below:
  • (a) From a biochemical standpoint, L-carnitine plays an essential role in energy metabolism. In fatty acid metabolism, it serves as shuttle between the cell sap and the mitochondria inner-workings permitting breakdown of the long carbon fragment. A major part of that role is in maintaining a balance between the concentration of a compound called acyl CoA in the cell compartments and in sugar metabolism.
  • Optimal ATP production from either dietary or stored fatty acids is dependent on L-carnitine. L-Carnitine has several roles, most of which involve conjugation of acyl residues to the b-hydroxyl group of the L-carnitine with subsequent translocation of this complex from one cellular compartment to another.
  • (b) Defects in fatty acid oxidation are a source of major morbidity and are potentially rapidly fatal. Fatty acid oxidation defects encompass a spectrum of clinical disorders, including recurrent hypoglycemic, hypoketotic encephalopathy or Reye-like syndrome in infancy with secondary seizures and potential developmental delay, progressive lipid storage myopathy, recurrent myoglobinuria, neuropathy, and progressive cardiomyopathy.
  • (c) Administration of L-carnitine prevents acute ammonia toxicity and enhances the efficacy of ammonia elimination as urea and glutamine. In addition the cytotoxic effects of ammonia, possibly arising from lipid peroxidation, are ameliorated by L-carnitine. These data indicate the feasibility of utilization of L-carnitine in the therapy of human hyperammonemic syndromes.
  • (d) L-Carnitine deficiency can be defined as a decrease of intracellular L-carnitine is a factor in inhibition of the mitochondrial oxidation of long-chain fatty acids during fasting causes heart or liver failure (which may cause encephalopathy by hypoketonaemia, hypoglycaemia and hyper-ammonium), lower acetylcholine synthesis in the nervous system.
  • L-carnitine plays a key and critical role in enhancing fat metabolism. Reports attest to the fact that L-carnitine works by transporting fatty acids to be burned for fuel, increasing both energy supply and lean muscle mass. Most found that unless an individual is deficient in L-carnitine, it is an unnecessary ergogenic aid. This contrasts with an apparent need in case of L-carnitine deficiency (e.g., in the case pursued by the inventors of Late Infantile Neuronal Ceroid Lipofuscinosis—one form of Batten Disease), of the correct operation of the endogenous production of L-carnitine. This need was corroborated in the observations of dogs with Batten Disease given exogenous L-Carnitine (Siakotos A. N., Hutchins G. D., Farlow M. R., Katz M. L., European Journal of Paediatric Neurology 5 Suppl A: 151-6, 2001) and those of the parents of the child who was afflicted with LINCL (discussed below). She was given exogenous L-carnitine for over three years without significant metabolic changes or marked outward observations of her condition. It was only the delivery of exogenous TML to the afflicted LINCL child that yielded significant metabolic and outward, observable changes to her condition.
  • A discussion of the experimental results presented in the parent application showed effectiveness of TML therapy in the amelioration of several symptoms including: hyperammonemia, a glutamine levels, insomnia, “nervousness” or myoclonus.
  • L-Carnitine may be essential or “conditionally” essential for several groups of people including: normal infants, premature infants, and both children and adults suffering from a variety of genetic, infectious, and injury-related illnesses. For example, some cardiomyopathies which afflict children are due to metabolic errors or deficiencies. There is data that supports treatment of some myocardial dysfunctions with L-carnitine supplementation. (Winter, S., Jue, K., Prochazka J., Francis, P., Hamilton, W., Linn, L., Helton, E. (1995) J. Child Neurol. 10, Supple 2: S45-51.)
  • For these and other reasons, all of which were described in detail in the parent application, it is believed that TML, or its derivatives which had been proposed in the parent application, can be used for the treatment of a human being diagnosed with one or more of the following: defects in carnitine biosynthesis pathway, inefficiency of endogeneous TML, over-accumulation of TML bound protein at the cellular level, renal failure conditions, hyperammonemic Encepalophathy, over-accumulation of glutamine in the brain, reduced and deficient fatty acid metabolism and shuttling of fatty acid in to mitochondria, insufficient ATP production or subsequent energy production and all the cellular activities associated with this events, defective fatty acid oxidation resulting from carnitine deficiency, hypoglycemia, hypoketotic, encephalopathy, Reye-like syndrome, for recurrent seizures and developmental delay, AIDS or AIDS-like conditions, over-accumulation of lipids causing myopathy, myoglobinuria, neuropathy, cardiomyopathy, ammonia over-production, hyperammonemic syndromes, over accumulation of triacylglycrols, Batten diseases, infantile neuronal lipofuscinoses diseases (Santavvori diseases), Late infantile neuronal lipofuscinoses diseases (Jansky-Bielscowsky), Speilmeyer disease, Sjorgsen disease, Kuf diseases, Parry diseases, Juvenile or adult neuronal lipofuscinoses diseases (“NCL”) disease, lysosomal accumulation of mitochondrial ATP synthase subunit and their by products, ataxia and seizures, various stages of mental impairment, (e.g., learning disability, clumsiness, stumbling, impaired motor skills, and dementia, hyperandrogenism caused by NCL, defective dopamine receptors caused by NCL, epileptic fits, myoclonic epilepsy, Parkinson's disease, and Alzheimer's disease.
  • In all the conditions as described above, TML derivatives would be equally or more effective after hydrolysis in cellular environment and liberation of free TML.
  • The experimental results presented during the prosecution of the parent application showed that the progress observed by the medical care-givers to the LINCL child-patient correlated with the administration of high purity TML. See Table B below.
  • TABLE B
    Results After TML Therapy.
    Test Name Nov. 19, 2003 Clinical Range Jan. 29, 2004 Clinical Range
    Hgb 14.4 high 14 normal
    HCT 42 high 40.3 normal
    RDW 11.5 high 12.3 normal
    ABS Lymphocytes 2.2 low 2.5 normal
    Glycine 50 high 25 normal
    Taurine 24 high 19 normal
    Carnitine, Total 40 normal 43 normal
    Carnitine, Esthers 7 normal 10 normal
    Alanine 87 high 47 normal
    Carbon Dioxide 32 high 22 normal
    BUN 2 low 5 (low) (6 is norm!)
    AST 60 high  50 (high) (40 is norm)
    Platelets 586 high 461 (high) (369 norm)
    Glutamine 99 high 70 normal
    Notes to the Table B:
    (a)HCB = hemoglobin, HCT = Hematocrit, RDW Red Cell Distribution Width, ABS absolute, BUN Blood Urea Nitrogen, AST = Aspartate Amonotransferase)
    (b)The examining physicians comments of Nov. 19, 2003 regarding Table B: (I) Alanine is elevated, this may be seen in states with increased pyruvate, (ii) Glutamine is increased, this may be seen, with Hyperammonemia.; Clinical correlation is indicated.
    (c)The examining physicians comments on Jan. 29, 2004 that no significant elevation of serum amino acid was seen.
    (d)The patient's glucose and potassium increased (Glucose 93 baseline to 132; Potassium 4.4 baseline to 4.8). Even though the follow up blood work was done after an all night fast, we did give her some “Gatorade” to drink before the blood test. This was given with her Klonopin to wash it down and certainly could be a contributing factor to the rise in glucose and potassium.
  • It was also found during the administration of TML to the child that it was essential that high, therapeutic-grade TML be used for treatment purposes.
  • Therefore, TML derivate compounds were invented and purified by the team of current inventors. These inventions are listed in the present application.
  • SUMMARY OF THE INVENTION
  • The present invention provides derivative compounds of the biologically active TML compound, which may be used to treat various diseases resulting from deficiencies in the TML-carnitine pathway, such as Late Infantile Neuronal Lipofuscinosis (LINCL) or Neuronal Ceroid Lipofuscinosis (NCL).
  • It is also believed these can be used to treat a human being diagnosed with one or more of the following: defects in carnitine biosynthesis pathway, efficiency of endogeneous TML, over-accumulation of TML bound protein at the cellular level, reduced and deficient fatty acid metabolism and shuttling of fatty acid in to mitochondria, insufficient ATP production or subsequent energy production and all the cellular activities associated with this events, defective fatty acid oxidation resulting from carnitine deficiency, hypoglycemia, hypoketotic, over accumulation of triacylglycrols, lysosomal accumulation of mitochondrial ATP synthase subunit and their by-products. This is described in detail in the allowed parent patent application Ser. No. 11/105,165.
  • In one embodiment, the invention provides a compound represented by Formula II:
  • Figure US20110166380A1-20110707-C00002
  • wherein R′ is selected from the group consisting of an alkyl having between 1 and 5 carbon atoms and an aromatic ring.
  • In one embodiment, the invention provides a compound represented by Formula III:
  • Figure US20110166380A1-20110707-C00003
  • wherein R″ is an alkyl having 1 to 5 carbon atoms or CH3.
  • In one embodiment, the invention provides a compound represented by Formula IV:
  • Figure US20110166380A1-20110707-C00004
  • wherein R″ is an alkyl having between 1 and 5 carbon atoms, or CH3 and R′ is an alkyl having between 1 and 5 carbon atoms or an aromatic ring.
  • In one embodiment, the invention provides a compound represented by Formula V:
  • Figure US20110166380A1-20110707-C00005
  • wherein a, a′, b, b′; c, c′, d, d′, e, and e′ are independently selected from H, deuterium, and an alkyl having between 1 and 5 carbon atoms; R′ is selected from the group consisting of H, an alkyl having between 1 and 5 carbon atoms and an aromatic ring; and, and each N is independently selected from nitrogen and N15 labeled nitrogen.
  • In one embodiment, the invention provides a compound represented by Formula VI:
  • Figure US20110166380A1-20110707-C00006
  • wherein the a, b, b′, c, c′, d, d′, e, and e′ are independently selected from H, deuterium, and an alkyl having from 1 to 5 carbon atoms, and each N is independently selected from nitrogen and N15 labeled nitrogen.
  • In another embodiment, the invention provides a method of purifying the TML compound represented by Formula I
  • Figure US20110166380A1-20110707-C00007
  • to at least 98% purity.
  • In another embodiment, the invention provides a method of purifying the TML derivate compounds represented by Formulas II, III, IV, V, and VI above to at least 98% purity.
  • The method of purifying the TML and TML derivative compounds involves the following steps:
      • 1. running the TML compound or TML derivative through an ion exchange resin column;
      • 2. washing the ion exchange resin column with at least 4 times the volume of water as the amount of present TML compound or TML derivative;
      • 3. eluting the washed TML compound or TML derivative from the ion exchange resin column to obtain eluted TML or TML derivative; and
      • 4. triturating the eluted TML or TML derivative.
  • In a preferred embodiment, the method further involves:
      • 5. dissolving the triturated TML into a polar solvent;
      • 6. filtering the dissolved TML through a microglass membrane filter; and
      • 7. lyophilizing the filtered TML at room temperature.
  • Although the process was outlined in the original application and is outlined in preceding paragraphs, a detailed summary of the general process is outlined in the Detailed Description. The synthesis was an improvement of the method reported in the literature, Frederic M. Vaz, Bela Melegh, Judith Bene, Dean Cuebas, Douglas A. Gage, Albert Bootsma, Peter Vreken, Albert H. van Gennip, Loran L. Bieber and Arnold J. A. Wanders; Clin. Chem.: 48:6, 826-834, 2002), and in the application as filed. However, the most critical part of the removal of impurities and careful monitoring of the fractions during ion-exchange column purification is documented. After the synthesis of TML from lysine, a careful collection of fractions was carried out and each fraction was monitored by thin layer chromatography, as reported in the parent application. The elution was done initially with deionized Millipore water, followed by 0.5 M aqueous (aq.) ammonia (NH3), followed by 1 M aq. ammonia. The fractions were visualized by ninhydrin test on the thin layer chromatography (TLC) plate. The early and late eluting fractions were found to be of impure or undesired impurity. The purest fractions thus observed were then combined to yield TML of high purity a was reported with no visible impurities by TLC (greater than 98%) and conform to correct mass spectral data and high-resolution proton NMR analysis.
  • DETAILED DESCRIPTION OF THE INVENTION
  • As used herein, the term “derivative” means any of Formulas II-VI. The invention incorporates both TML and TML derivatives. As such, any mention of TML also encapsulates the TML derivative compounds.
  • The symbol “—” represents a covalent bond.
  • Reference to a chain, such as an alkyl, can mean either the branched or unbranched chain unless otherwise noted.
  • An “alkyl”, as used herein, means either a branched or unbranched alkyl chain, and includes, for example, methyl, ethyl, n-propyl, isopropyl, n-butyl, sec-butyl, isobutyl, tert-butyl, n-pentyl, and the like.
  • As used herein, “dilute” means ten percent or less in solution.
  • As used herein “excess” means a stoicheometry greater than 1:1.
  • A “mild base,” as used herein, means a dilute base.
  • The phrase “pharmaceutically acceptable” indicates that the designated carrier, vehicle, diluent, excipient(s), and/or salt must be chemically and/or physically compatible with the other ingredients comprising the Formulation, and physiologically compatible with the recipient thereof.
  • The invention provides a compound represented by Formula II:
  • Figure US20110166380A1-20110707-C00008
  • wherein R′ is selected from an alkyl having between 1 and 5 carbon atoms and an aromatic ring.
  • The invention provides a compound represented by Formula III:
  • Figure US20110166380A1-20110707-C00009
  • wherein R″ is selected from an alkyl having between 1 and 5 carbon atoms, and an aromatic ring.
  • The invention provides a compound represented by Formula IV:
  • Figure US20110166380A1-20110707-C00010
  • wherein R′ is selected from an alkyl having between 1 and 5 carbon atoms, and CH3 and R″ is selected from an alkyl having between 1 and 5 carbon atoms, and an aromatic ring.
  • The invention provides a compound represented by Formula V:
  • Figure US20110166380A1-20110707-C00011
  • wherein a, a′, b, b′, c, c′, d, d′, e, and e′ are independently selected from H, deuterium, and an alkyl having between 1 and 5 carbon atoms and R′ is selected from H, an alkyl having between 1 and 5 carbon atoms, or an aromatic ring.
  • In a preferred embodiment, each N is independently selected from nitrogen or N15 labeled nitrogen.
  • Improved Method of Synthesis and Purification of TML and TML Derivatives
  • Starting Raw Material: L-lysine HCl (Sigma-Aldrich, St. Louis, Mo.), dimethylsulfate (99.99%) Sigma-Aldrich, St. Louis, Mo.), alkaline copper carbonate (Sigma-Aldrich, St. Louis, Mo.), double distilled water (highly purified), Whatman 3MM Chromatography blotting paper (Whatman Inc., Florham Park, N.J.), sodium hydroxide (NaOH, 99%+) (Sigma-Aldrich, St. Louis, Mo.), Dowex SOWX8 ion exchange column (The Dow Chemical Company, Midland, Mich.).
  • L-lysine HCL (50 gm; 0.274 mol)) was dissolved in distilled water (500 mL) and copper carbonate basic (72 gm; 0.326 mol) was added. The mixture was boiled at 85 centigrade for 10 minutes.
  • The reaction mixture was cooled to room temperature and filtered with Whatman 3MM paper. The clear filtrate was mixed with dimethylsulfate, 100 mL (1.055 mol) at room temperature, after which 325 mL of aq. sodiumhydroxide solution (10% aq.; 1.055 mol; w/v, in dd water) was added drop-wise during 30 minutes, then stirred at room temperature for 60 min.
  • A 17″height×2″dia Dowex5OWx8 ion exchange column (H+ form) was washed with de-ionized water prior to the addition of the TML solution.
  • The solution containing the TML was then added to Dowex5OWx8 column.
  • The column was copiously washed with 500 mL of distilled water. This process was repeated with 1700 mL water and 1000 mL and 700 mL fractions were collected. The collection and monitoring of these fractions were accomplished by thing layer chromatography (TLC) and ninhydrin color tests.
  • Subsequently, 2M ammonium hydroxide solution was run and 8 fractions (each fraction 50 mL, followed by 100 mL) were collected. TLC analysis was performed on all the fractions (tic system:MeOH:water:Aceticacid::80:10:10). These fractions are detailed in Table C below.
  • TABLE C
    Tabular Summary of Ion-Exchange Column Purification Steps.
    Fraction# Solvent Volume Result
    1 H20 50 Negative
    2 0.5M aq NH3   75 Negative
    3 0.5M aq NH3   75 Negative
    4 0.5M aq NH3   50 Negative
    5 1M aq NH3 50 Positive
    6 1M aq NH3 50 Positive
    7 1M aq NH3 50 Positive
    8 1M aq NH3 50 Positive
    9 2M aq NH3 50 Positive
    10 2M aq NH3 100 Positive
    11 2M aq NH3 100 Positive
    12 2M aq NH3 100 Positive
    13 2M aq NH3 100 Negative
    Table C Notes:
    1. The Ion- Exchange purification on Dowex 50WX8 inch column length 17 “heightX2” diameter. First elution (Fraction 1) 100 ml water; subsequent elution in .5M aq NH3, 200 ml; subsequent elution in 1M aq NH3; 200 ml; followed by last elution in 2M aq NH3; 500 ml.
    2. TLC solvent system methanol:water:acetic acid:: 80:10:10 was used to check all fractions after staining the TLC plate with ninhydrin solution and observing colored stained band.
    3. Fractions 5 to 10 were pure fractions, so they were combined and evaporated.
  • The eight fractions were combined and evaporated to yield an oil. The oil was subsequently lyophilized at room temperature to yield a solid.
  • The solid was triturated in acetonitrile and filtered and washed with acetonitrile again.
  • The solid was dissolved in methanol/water (95:5::Methanol:ddWater) and filtered with glass micro filter paper and the filtrate was evaporated and lyophilized.
  • Large-Scale Purification of TML
  • A larger scale synthesis has been achieved, which is further amenable to large-scale production of TML. The larger scale synthesis of TML incorporating step of final clean up to achieve purity of at least 98% or greater, and free of foreign materials, has been demonstrated. The literature procedure does not teach synthesis of high purity TML or TML derivative, which could be applicable to pharmaceutical-grade product. Thus, the purification steps that allow larger scale synthesis can be described as follows:
      • 1. Running crude TML or TML derivative through an ion exchange resin column;
      • 2. Washing the ion exchange resin column with at least 4 times the volume of water as the amount of present crude TML or TML derivative;
      • 3. Eluting the washed TML or TML derivative from the ion exchange resin column;
      • 4. Freezing the eluted solution and then lyophilize at room temperature to prevent or minimize any decomposition of obtained TML or TML derivative; and
      • 5. Triturating the lyophilized solid TML or TML derivative.
  • In another embodiment, the following steps may include:
      • 5. Dissolving the triturated TML or TML derivative into a polar solvent;
      • 6. Filtering the dissolved TML or TML derivative through a microglass membrane filter; and
      • 7. Lyophilizing the filtered TML or TML derivative at room temperature.
  • This process is an improvement of what is disclosed in Frederic M. Vaz, Bela Melegh, Judit Bene, Dean Cuebas, Douglas A. Gage, Albert Bootsma, Peter Vreken, Albert H. Van Gennip, Loran L. Bieber And Ronald J. A. Wanders, Clin. Chem. 48:6, 826-834, 2002.
  • Quality Control
  • The following quality control parameters were obtained:
      • A. TLC' Samples 1 and 2 were purified TML made according to the invention. Sample 3 was a reference TML purchased from Sigma-Aldrich. The tic plates were Baker-flex silica gel 1B-F. TLC Purity' was greater than 99%, and the spots were observed after staining the spot with ninhydrin (10% in methnol) (FIG. 1).
      • B. 1H NMR: The 1H NMR (Proton in D20) was run on 300 MHz; 1.3932 ppm (methylene at C-2; 2H, broad singlet), 1.6643 ppm (methylene at C-3 2H, broad, multiplet); 2.13 ppm (methylene at C-4; 2H, broad singlet), 3.2928 ppm (methylene proton at C-5, 2H; triplet); 3.2167 ppm (alpha H; 1H; triplet); 3.0798 ppm (trimethyl H's; 9H) (FIGS. 2a and 2 b).
      • C. Mass Spectrum: Chemical Formula C9H20N 202, Molecular weight; 189.28. Four major fragmentation peaks were observed in positive mode; m/e 189.3, m/e 211.2 (+Na ion), m/e 377.5 (possibly dimer formation) and m/e 399.5 (possibly Na+ ion addition on dimmer) (FIG. 3).
  • Salt Formation
  • The TML synthesized (as described above) had no external salt. The carboxylic group (which is negatively charged) and the trimethyl group (which is positively charged) form an internal salt. The alpha amino group picks up the proton from the ionized carboxylic group. The molecular weight of this TML is 188.3 From our Mass Spectral analysis (positive ion) we get the molecular ion peak at 189.28 (One extra mass in positive ion is proton adding from matrix). This data confirms MW of 188.3.
  • The skilled artisan will understand that TML can exist as an external salt as well, such as a potassium salt.

Claims (12)

1. A compound represented by Formula I
Figure US20110166380A1-20110707-C00012
with a pharmaceutically acceptable purity level.
2. The compound of claim 1, wherein said purity level is at least 98%.
3. A compound represented by Formula II
Figure US20110166380A1-20110707-C00013
wherein R′ is selected from the group consisting of (an alkyl having between 1 and 5 carbon atoms, and an aromatic ring).
4. The compound of claim 3, wherein the compound is at least 98% pure.
5. A compound represented by Formula III
Figure US20110166380A1-20110707-C00014
wherein R″ is selected from the group consisting of (an alkyl having between 1 and 5 carbon atoms, CH3, and an aromatic ring).
6. The compound of claim 5, wherein the compound is at least 98% pure.
7. A compound represented by Formula IV
Figure US20110166380A1-20110707-C00015
wherein R′ is an alkyl having between 1 and 5 carbon atoms, or CH3, and wherein R″ is an alkyl having between 1 and 5 carbon atoms or an aromatic ring.
8. The compound of claim 7, wherein the compound is at least 98% pure.
9. A compound represented by Formula V
Figure US20110166380A1-20110707-C00016
wherein a, a′, b, b′; c, c′, d, d′, e, and e′ are independently selected from the group consisting of (H, deuterium, and an alkyl having between 1 and 5 carbon atoms); R′ is selected from the group consisting of (H, an alkyl having between 1 and 5 carbon atoms and an aromatic ring); and each N is independently selected from nitrogen and N15 labeled nitrogen.
10. The compound of claim 9, wherein the compound is at least 98% pure.
11. A compound represented by Formula VI
Figure US20110166380A1-20110707-C00017
wherein the a, b, b′, c, c′, d, d′, e, and e′ are independently selected from the group consisting of (H, deuterium, and an alkyl having from 1 to 5 carbon atoms), and each N is independently selected from nitrogen and N15 labeled nitrogen.
12. The compound of claim 11, wherein the compound is at least 98% pure.
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