TWI885227B - Nucleic acid detection kit and nucleic acid detection method - Google Patents
Nucleic acid detection kit and nucleic acid detection method Download PDFInfo
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本揭露是關於核酸偵測套組與核酸偵測方法,且特別是關於GAPDH核酸偵測套組、標的核酸偵測套組或新型冠狀病毒之核酸偵測套組與偵測方法。The present disclosure relates to a nucleic acid detection kit and a nucleic acid detection method, and in particular to a GAPDH nucleic acid detection kit, a target nucleic acid detection kit or a novel coronavirus nucleic acid detection kit and a detection method.
新冠肺炎由新型冠狀病毒(SARS-CoV-2)感染所引起。截至2021年2月20日為止,全球已有1.1億人受到感染,超過246萬人死亡。新冠肺炎臨床症狀多變,從嚴重肺炎、呼吸窘迫、味覺喪失,到無症狀感染皆有。COVID-19 is caused by the novel coronavirus (SARS-CoV-2). As of February 20, 2021, 110 million people have been infected worldwide and more than 2.46 million people have died. The clinical symptoms of COVID-19 vary, ranging from severe pneumonia, respiratory distress, loss of taste, to asymptomatic infection.
目前新型冠狀病毒的檢測方法之步驟主要包括,採集上呼吸道檢體 (鼻咽或咽喉擦拭液)或下呼吸道檢體(痰液、氣管內抽取液或支氣管肺泡沖洗液),將檢體經過核酸萃取,且之後以定量反轉錄聚合酶反應 (RT-qPCR, Quantitative reverse transcription PCR) 檢測,而篩檢時間約為4小時。採檢者須穿戴手套、隔離衣與護目鏡等防護措施,而此過程需要大量人力及備品的支援。又,上呼吸道檢體 (鼻咽或咽喉擦拭液)或下呼吸道檢體的採集屬於侵入性採集,易造成受檢者的不適,而引起打噴嚏或咳嗽等飛沫產生,進而產生病毒散播的潛在危機。The current detection method for the novel coronavirus mainly includes collecting upper respiratory tract specimens (nasopharyngeal or throat swabs) or lower respiratory tract specimens (sputum, endotracheal extracts or bronchoalveolar lavage fluid), extracting nucleic acids from the specimens, and then testing them with quantitative reverse transcription polymerase reaction (RT-qPCR, Quantitative reverse transcription PCR), and the screening time is about 4 hours. The tester must wear protective measures such as gloves, isolation clothing and goggles, and this process requires a lot of manpower and supplies. In addition, the collection of upper respiratory tract specimens (nasopharyngeal or throat swabs) or lower respiratory tract specimens is invasive, which can easily cause discomfort to the testee, causing sneezing or coughing and other droplets, and thus creating a potential risk of virus spread.
因此,目前亟需一種新穎之核酸檢測套組與方法,其不僅具備相當不錯的偵測靈敏度,且可採用非侵入式採集之檢體來進行檢驗。Therefore, there is an urgent need for a novel nucleic acid detection kit and method, which not only has a good detection sensitivity but also can use non-invasively collected samples for testing.
本揭露提供一種GAPDH核酸偵測套組,包括一偵測GAPDH核酸之引子組。該偵測GAPDH核酸之引子組包括:一針對GAPDH核酸之順向內引子;一針對GAPDH核酸之順向外引子;一針對GAPDH核酸之逆向內引子;以及一針對GAPDH核酸之逆向外引子。該針對GAPDH核酸之順向內引子係由一第一片段與一第二片段所組成,而該第一片段之3’端連接該第二片段之5’端,或該針對GAPDH核酸之順向內引子係由一第一片段、一第一連接子與一第二片段所組成,而該第一片段之3’端連接該第一連接子之5’端,且該第一連接子之3’端連接該第二片段之5’端。該第一片段具有約10-30個核苷酸,且係由一第一序列區段之互補股所組成,而該第一序列區段位於序列識別號:1之核苷酸序列的第134個位點至第175個位點之間,又該第二片段具有10-30個核苷酸,且係由一第二序列區段所組成,而該第二序列區段係位於序列識別號:1之核苷酸序列的第77個位點至第115個位點之間,且該第一連接子係由1-6個胸腺嘧啶(thymine, T)或肽核酸(peptide nucleic acid, PNA)所組成。該針對GAPDH核酸之順向外引子具有約10-30個核苷酸,且係由一第三序列區段所組成,而該第三序列區段係位於序列識別號:1之核苷酸序列的第42個位點至第79個位點之間。該針對GAPDH核酸之逆向內引子係由一第三片段與一第四片段所組成,而該第三片段之3’端連接該第四片段之5’端,或該針對GAPDH核酸之逆向內引子係由一第三片段、一第二連接子與一第四片段所組成,而該第三片段之3’端連接該第二連接子之5’端,且該第二連接子之3’端連接該第四片段之5’端。該第三片段具有約10-30個核苷酸,且係由一第四序列區段所組成,而該第四序列區段係位於序列識別號:1之核苷酸序列的第156個位點至第207個位點之間,又該第四片段具有約10-30個核苷酸,且係由一第五序列區段之互補股所組成,而該第五序列區段係位於序列識別號:1之核苷酸序列的第211個位點至第250個位點之間,且該第二連接子係由1-6個胸腺嘧啶或肽核酸所組成。該針對GAPDH核酸之逆向外引子具有約10-30個核苷酸,且係由一第六序列區段之互補股所組成,而該第六序列區段係位於序列識別號:1之核苷酸序列的第238個位點至第275個位點之間。又,該偵測GAPDH核酸之引子組係用於一恆溫環型核酸擴增法(loop-mediated isothermal amplification, LAMP),而該恆溫環型核酸擴增法包括標準恆溫環型核酸擴增法或反轉錄恆溫環型核酸擴增法(reverse transcription loop-mediated isothermal amplification, RT LAMP)。The present disclosure provides a GAPDH nucleic acid detection kit, including a primer set for detecting GAPDH nucleic acid. The primer set for detecting GAPDH nucleic acid includes: a forward inner primer for GAPDH nucleic acid; a forward outer primer for GAPDH nucleic acid; a reverse inner primer for GAPDH nucleic acid; and a reverse outer primer for GAPDH nucleic acid. The forward inner primer for GAPDH nucleic acid is composed of a first fragment and a second fragment, and the 3' end of the first fragment is connected to the 5' end of the second fragment, or the forward inner primer for GAPDH nucleic acid is composed of a first fragment, a first linker and a second fragment, and the 3' end of the first fragment is connected to the 5' end of the first linker, and the 3' end of the first linker is connected to the 5' end of the second fragment. The first fragment has about 10-30 nucleotides and is composed of a complementary strand of a first sequence segment, and the first sequence segment is located between the 134th position and the 175th position of the nucleotide sequence of sequence identification number: 1. The second fragment has 10-30 nucleotides and is composed of a second sequence segment, and the second sequence segment is located between the 77th position and the 115th position of the nucleotide sequence of sequence identification number: 1, and the first linker is composed of 1-6 thymines (thymine, T) or peptide nucleic acid (peptide nucleic acid, PNA). The forward outer primer for GAPDH nucleic acid has about 10-30 nucleotides and is composed of a third sequence segment, and the third sequence segment is located between the 42nd position and the 79th position of the nucleotide sequence of sequence identification number: 1. The reverse inner primer for GAPDH nucleic acid is composed of a third segment and a fourth segment, and the 3' end of the third segment is connected to the 5' end of the fourth segment, or the reverse inner primer for GAPDH nucleic acid is composed of a third segment, a second linker and a fourth segment, and the 3' end of the third segment is connected to the 5' end of the second linker, and the 3' end of the second linker is connected to the 5' end of the fourth segment. The third fragment has about 10-30 nucleotides and is composed of a fourth sequence segment, and the fourth sequence segment is located between the 156th position and the 207th position of the nucleotide sequence of sequence identification number: 1. The fourth fragment has about 10-30 nucleotides and is composed of a complementary strand of a fifth sequence segment, and the fifth sequence segment is located between the 211th position and the 250th position of the nucleotide sequence of sequence identification number: 1, and the second linker is composed of 1-6 thymines or peptide nucleic acid. The reverse outer primer for GAPDH nucleic acid has about 10-30 nucleotides and is composed of a complementary strand of a sixth sequence segment, and the sixth sequence segment is located between the 238th position and the 275th position of the nucleotide sequence of sequence identification number: 1. Furthermore, the primer set for detecting GAPDH nucleic acid is used in a loop-mediated isothermal amplification (LAMP) method, and the loop-mediated isothermal amplification method includes a standard loop-mediated isothermal amplification method or a reverse transcription loop-mediated isothermal amplification (RT LAMP) method.
本揭露也提供一種標的核酸偵測套組,包括一偵測GAPDH核酸之引子組以及一偵測標的核酸之引子組。該偵測GAPDH核酸之引子組包括:一針對GAPDH核酸之順向內引子;一針對GAPDH核酸之順向外引子;一針對GAPDH核酸之逆向內引子;以及一針對GAPDH核酸之逆向外引子。該針對GAPDH核酸之順向內引子係由一第一片段與一第二片段所組成,而該第一片段之3’端連接該第二片段之5’端,或該針對GAPDH核酸之順向內引子係由一第一片段、一第一連接子與一第二片段所組成,而該第一片段之3’端連接該第一連接子之5’端,且該第一連接子之3’端連接該第二片段之5’端,其中該第一片段具有約10-30個核苷酸,且係由一第一序列區段之互補股所組成,而該第一序列區段係位於序列識別號:1之核苷酸序列的第134個位點至第175個位點之間,又該第二片段具有約10-30個核苷酸,且係由一第二序列區段所組成,而該第二序列區段係位於序列識別號:1之核苷酸序列的第77個位點至第115個位點之間,且該第一連接子係由1-6個胸腺嘧啶或肽核酸所組成。該針對GAPDH核酸之順向外引子具有約10-30個核苷酸,且係由為一第三序列區段所組成,而該第三序列區段位於序列識別號:1之核苷酸序列的第42個位點至第79個位點之間。該針對GAPDH核酸之逆向內引子係由一第三片段與一第四片段所組成,而該第三片段之3’端連接該第四片段的5’端,或該針對GAPDH核酸之逆向內引子係由一第三片段、一第二連接子與一第四片段所組成,而該第三片段之3’端連接該第二連接子之5’端,且該第二連接子之3’端連接該第四片段之5’端,其中該第三片段具有約10-30個核苷酸,且係由一第四序列區段所組成,而該第四序列區段位於序列識別號:1之核苷酸序列的第156個位點至第207個位點之間,又該第四片段具有約10-30個核苷酸,且係由一第五序列區段之互補股所組成,而該第五序列區段係位於序列識別號:1之核苷酸序列的第211個位點至第250個位點之間,且該第二連接子係由1-6個胸腺嘧啶或肽核酸所組成。該針對GAPDH核酸之逆向外引子具有約10-30個核苷酸,且係由一第六序列區段之互補股所組成,而該第六序列區段位於序列識別號:1之核苷酸序列的第238個位點至第275個位點之間。又,偵測標的核酸之引子組,包括:一針對標的核酸之順向內引子;一針對標的核酸之順向外引子;一針對標的核酸之逆向內引子;以及一針對標的核酸之逆向外引子。該偵測標的核酸之引子組的偵測標的不同於該偵測GAPDH核酸之引子組的偵測標的。該偵測GAPDH核酸之引子組與該偵測標的核酸之引子組分別用於一第一恆溫環型核酸擴增法與一第二恆溫環型核酸擴增法,而該第一恆溫環型核酸擴增法與該第二恆溫環型核酸擴增法獨立地包括,標準恆溫環型核酸擴增法或反轉錄恆溫環型核酸擴增法。此外,該第一恆溫環型核酸擴增法的結果,可作為一內部控制組。The present disclosure also provides a target nucleic acid detection kit, including a primer set for detecting GAPDH nucleic acid and a primer set for detecting target nucleic acid. The primer set for detecting GAPDH nucleic acid includes: a forward inner primer for GAPDH nucleic acid; a forward outer primer for GAPDH nucleic acid; a reverse inner primer for GAPDH nucleic acid; and a reverse outer primer for GAPDH nucleic acid. The forward inner primer for GAPDH nucleic acid is composed of a first segment and a second segment, and the 3' end of the first segment is connected to the 5' end of the second segment, or the forward inner primer for GAPDH nucleic acid is composed of a first segment, a first linker and a second segment, and the 3' end of the first segment is connected to the 5' end of the first linker, and the 3' end of the first linker is connected to the 5' end of the second segment, wherein the first segment has about 10-30 nucleotides , and is composed of a complementary strand of a first sequence segment, and the first sequence segment is located between the 134th position and the 175th position of the nucleotide sequence of sequence identification number: 1, and the second fragment has about 10-30 nucleotides and is composed of a second sequence segment, and the second sequence segment is located between the 77th position and the 115th position of the nucleotide sequence of sequence identification number: 1, and the first linker is composed of 1-6 thymines or peptide nucleic acid. The forward outer primer for GAPDH nucleic acid has about 10-30 nucleotides and is composed of a third sequence segment, and the third sequence segment is located between the 42nd position and the 79th position of the nucleotide sequence of sequence identification number: 1. The reverse inner primer for GAPDH nucleic acid is composed of a third segment and a fourth segment, and the 3' end of the third segment is connected to the 5' end of the fourth segment, or the reverse inner primer for GAPDH nucleic acid is composed of a third segment, a second linker and a fourth segment, and the 3' end of the third segment is connected to the 5' end of the second linker, and the 3' end of the second linker is connected to the 5' end of the fourth segment, wherein the third segment has about 10-30 nucleotides , and is composed of a fourth sequence segment, and the fourth sequence segment is located between the 156th position and the 207th position of the nucleotide sequence of sequence identification number: 1, and the fourth segment has about 10-30 nucleotides and is composed of a complementary strand of a fifth sequence segment, and the fifth sequence segment is located between the 211th position and the 250th position of the nucleotide sequence of sequence identification number: 1, and the second linker is composed of 1-6 thymines or peptide nucleic acid. The reverse exon primer for GAPDH nucleic acid has about 10-30 nucleotides and is composed of a complementary strand of a sixth sequence segment, and the sixth sequence segment is located between the 238th position and the 275th position of the nucleotide sequence of sequence identification number: 1. Furthermore, the primer set for detecting the target nucleic acid includes: a forward inner primer for the target nucleic acid; a forward outer primer for the target nucleic acid; a reverse inner primer for the target nucleic acid; and a reverse outer primer for the target nucleic acid. The detection target of the primer set for detecting the target nucleic acid is different from the detection target of the primer set for detecting the GAPDH nucleic acid. The primer set for detecting GAPDH nucleic acid and the primer set for detecting target nucleic acid are used in a first constant temperature circular nucleic acid amplification method and a second constant temperature circular nucleic acid amplification method, respectively, and the first constant temperature circular nucleic acid amplification method and the second constant temperature circular nucleic acid amplification method independently include a standard constant temperature circular nucleic acid amplification method or a reverse transcription constant temperature circular nucleic acid amplification method. In addition, the result of the first constant temperature circular nucleic acid amplification method can be used as an internal control group.
本揭露還提供一種新型冠狀病毒偵測套組,包括:一偵測新型冠狀病毒之核酸的引子組。該偵測新型冠狀病毒之核酸的引子組包括:一針對新型冠狀病毒之核酸之順向內引子;一針對新型冠狀病毒之核酸之順向外引子;一針對新型冠狀病毒之核酸之逆向內引子;以及一針對新型冠狀病毒之核酸之逆向外引子。該針對新型冠狀病毒之核酸之順向內引子係由一第五片段與一第六片段所組成,而該第五片段之3’端連接該第六片段之的5’端,或該針對標的核酸之順向內引子係由一第五片段、一第三連接子與一第六片段所組成,而該第五片段之3’端連接該第三連接子之5’端,且該第三連接子之3’端連接該第六片段之5’端。該第五片段具有約10-30個核苷酸,且係由一第七序列區段之互補股所組成,而該第七序列區段係位於序列識別號:11之核苷酸序列的第90個位點至第134個位點之間,又該第六片段具有約10-30個核苷酸,且係由一第八序列區段所組成,而該第八序列區段係位於序列識別號:11之核苷酸序列的第45個位點至第82個位點之間,且該第三連接子係由1-6個胸腺嘧啶或肽核酸所組成。該針對新型冠狀病毒之核酸之順向外引子具有約10-30個核苷酸,且係由為一第九序列區段所組成,而該第九序列區段係位於序列識別號:11之核苷酸序列的第27個位點至第64個位點之間。該針對新型冠狀病毒之核酸之逆向內引子係由一第七片段與一第八片段所組成,而該第七片段之3’端連接該第八片段之的5’端,或該針對標的核酸之逆向內引子係由一第七片段、一第四連接子與一第八片段所組成,而該第七片段之3’端連接該第四連接子之5’端,且該第四連接子之3’端連接該第八片段之5’端。該第七片段具有約10-30個核苷酸,且係由一第十序列區段所組成,而該第十序列區段係位於序列識別號:11之核苷酸序列的第123個位點至第165個位點之間,又該第八片段具有約10-30個核苷酸,且係由一第十一序列區段之互補股所組成,而該第十一序列區段係位於序列識別號:11之核苷酸序列的第170個位點至第208個位點之間,且該第四連接子係由1-6個胸腺嘧啶或肽核酸所組成。該針對新型冠狀病毒之核酸之逆向外引子具有約10-30個核苷酸,且係由為一第十二序列區段之互補股所組成,而該第十二序列區段係位於序列識別號:11之核苷酸序列的第226個位點至第263個位點之間。又,該偵測新型冠狀病毒之核酸的引子組用於一恆溫環型核酸擴增法,而該恆溫環型核酸擴增法包括標準恆溫環型核酸擴增法或反轉錄恆溫環型核酸擴增法。The present disclosure also provides a novel coronavirus detection kit, including: a primer set for detecting the nucleic acid of the novel coronavirus. The primer set for detecting the nucleic acid of the novel coronavirus includes: a forward inner primer for the nucleic acid of the novel coronavirus; a forward outer primer for the nucleic acid of the novel coronavirus; a reverse inner primer for the nucleic acid of the novel coronavirus; and a reverse outer primer for the nucleic acid of the novel coronavirus. The forward inner primer for the nucleic acid of the novel coronavirus is composed of a fifth segment and a sixth segment, and the 3' end of the fifth segment is connected to the 5' end of the sixth segment, or the forward inner primer for the target nucleic acid is composed of a fifth segment, a third linker and a sixth segment, and the 3' end of the fifth segment is connected to the 5' end of the third linker, and the 3' end of the third linker is connected to the 5' end of the sixth segment. The fifth segment has about 10-30 nucleotides and is composed of a complementary strand of a seventh sequence segment, and the seventh sequence segment is located between the 90th and 134th positions of the nucleotide sequence of sequence identification number: 11, and the sixth segment has about 10-30 nucleotides and is composed of an eighth sequence segment, and the eighth sequence segment is located between the 45th and 82nd positions of the nucleotide sequence of sequence identification number: 11, and the third linker is composed of 1-6 thymines or peptide nucleic acids. The forward outer primer for the nucleic acid against the novel coronavirus has about 10-30 nucleotides and is composed of a ninth sequence segment, and the ninth sequence segment is located between the 27th and 64th positions of the nucleotide sequence of sequence identification number: 11. The reverse inner primer for the nucleic acid of the novel coronavirus is composed of a seventh segment and an eighth segment, and the 3' end of the seventh segment is connected to the 5' end of the eighth segment, or the reverse inner primer for the target nucleic acid is composed of a seventh segment, a fourth linker and an eighth segment, and the 3' end of the seventh segment is connected to the 5' end of the fourth linker, and the 3' end of the fourth linker is connected to the 5' end of the eighth segment. The seventh fragment has about 10-30 nucleotides and is composed of a tenth sequence segment, and the tenth sequence segment is located between the 123rd and 165th positions of the nucleotide sequence of sequence identification number: 11. The eighth fragment has about 10-30 nucleotides and is composed of a complementary strand of an eleventh sequence segment, and the eleventh sequence segment is located between the 170th and 208th positions of the nucleotide sequence of sequence identification number: 11, and the fourth linker is composed of 1-6 thymines or peptide nucleic acids. The reverse outer primer for the nucleic acid of the novel coronavirus has about 10-30 nucleotides and is composed of a complementary strand of a twelfth sequence segment, and the twelfth sequence segment is located between the 226th position and the 263rd position of the nucleotide sequence of sequence identification number: 11. In addition, the primer set for detecting the nucleic acid of the novel coronavirus is used in a constant temperature circular nucleic acid amplification method, and the constant temperature circular nucleic acid amplification method includes a standard constant temperature circular nucleic acid amplification method or a reverse transcription constant temperature circular nucleic acid amplification method.
又,本揭露提供一種偵測GAPDH核酸之方法,包括:(a) 提供一待測樣本;以及(b) 將該待測樣本以上述之GAPDH核酸偵測套組中的該偵測GAPDH核酸之引子組進行該恆溫環型核酸擴增法。若該待測樣本含有GAPDH核酸,則自該恆溫環型核酸擴增法獲得一GAPDH的核酸擴增產物。該恆溫環型核酸擴增法包括,標準恆溫環型核酸擴增法或反轉錄恆溫環型核酸擴增法。In addition, the present disclosure provides a method for detecting GAPDH nucleic acid, comprising: (a) providing a sample to be tested; and (b) subjecting the sample to be tested to the constant temperature circular nucleic acid amplification method using the primer set for detecting GAPDH nucleic acid in the above-mentioned GAPDH nucleic acid detection kit. If the sample to be tested contains GAPDH nucleic acid, a GAPDH nucleic acid amplification product is obtained from the constant temperature circular nucleic acid amplification method. The constant temperature circular nucleic acid amplification method includes a standard constant temperature circular nucleic acid amplification method or a reverse transcription constant temperature circular nucleic acid amplification method.
本揭露也提供一種偵測新型冠狀病毒的方法,包括:(a) 提供一待測樣本;以及(b) 將該待測樣本以上述之新型冠狀病毒偵測套組中的該偵測新型冠狀病毒之核酸的引子組進行一恆溫環型核酸擴增法。若該待測樣本含有新型冠狀病毒,自該恆溫環型核酸擴增法獲得一新型冠狀病毒的核酸擴增產物。又,該恆溫環型核酸擴增法包括,標準恆溫環型核酸擴增法或反轉錄恆溫環型核酸擴增法。The present disclosure also provides a method for detecting a novel coronavirus, comprising: (a) providing a sample to be tested; and (b) subjecting the sample to be tested to a constant temperature circular nucleic acid amplification method using the primer set for detecting the nucleic acid of the novel coronavirus in the novel coronavirus detection kit described above. If the sample to be tested contains the novel coronavirus, a nucleic acid amplification product of the novel coronavirus is obtained from the constant temperature circular nucleic acid amplification method. Furthermore, the constant temperature circular nucleic acid amplification method includes a standard constant temperature circular nucleic acid amplification method or a reverse transcription constant temperature circular nucleic acid amplification method.
為了讓本發明之上述和其他目的、特徵、和優點能更明顯易懂,下文特舉較佳實施例,並配合所附圖示,作詳細說明如下:In order to make the above and other purposes, features, and advantages of the present invention more clearly understood, the following is a detailed description of the preferred embodiments with reference to the accompanying drawings as follows:
本揭露可提供一種GAPDH核酸偵測套組,其可包括一偵測GAPDH核酸之引子組,但不限於此。The present disclosure may provide a GAPDH nucleic acid detection kit, which may include a primer set for detecting GAPDH nucleic acid, but is not limited thereto.
上述本揭露之GAPDH核酸偵測套組中的偵測GAPDH核酸之引子組,可用於一恆溫環型核酸擴增法(loop-mediated isothermal amplification, LAMP),以確認一待測樣本中是否存在GAPDH核酸。The primer set for detecting GAPDH nucleic acid in the GAPDH nucleic acid detection kit disclosed above can be used in a loop-mediated isothermal amplification (LAMP) method to confirm whether GAPDH nucleic acid exists in a sample to be tested.
上述恆溫環型核酸擴增法,可包括,標準恆溫環型核酸擴增法或反轉錄恆溫環型核酸擴增法(reverse transcription loop-mediated isothermal amplification, RT LAMP),但不限於此。The above-mentioned constant temperature circular nucleic acid amplification method may include, but is not limited to, a standard constant temperature circular nucleic acid amplification method or a reverse transcription loop-mediated isothermal amplification method (RT LAMP).
而上述待測樣本,可為一未經任何純化處理,例如未經核酸純化處理之樣本。亦即,藉由上述本揭露之GAPDH核酸偵測套組中的偵測GAPDH核酸之引子組,可對一未經任何純化處理之生物樣本,進行核酸擴增反應,而獲得準確之GAPDH核酸偵測結果,而可達成減少或免除處理待測樣本的效果。The sample to be tested may be a sample that has not been subjected to any purification treatment, such as a sample that has not been subjected to nucleic acid purification treatment. That is, by using the primer set for detecting GAPDH nucleic acid in the GAPDH nucleic acid detection kit disclosed above, a nucleic acid amplification reaction can be performed on a biological sample that has not been subjected to any purification treatment to obtain accurate GAPDH nucleic acid detection results, thereby achieving the effect of reducing or eliminating the need to process the sample to be tested.
上述待測樣本之來源可包括,但不限於,唾液檢體、痰液檢體、鼻腔拭子(nose swab)檢體、咽喉拭子(throat swab)檢體、鼻咽(nasopharyngeal)檢體、尿液檢體、糞便檢體、直腸拭子(rectal swab)檢體、腦脊髓液(cerebrospinal fluid, CSF)檢體、體液(body fluid)檢體等。The sources of the above-mentioned samples to be tested may include, but are not limited to, saliva samples, sputum samples, nose swab samples, throat swab samples, nasopharyngeal samples, urine samples, stool samples, rectal swab samples, cerebrospinal fluid (CSF) samples, body fluid samples, etc.
在一實施例中,上述待測樣本之來源可為一非侵入式採樣所獲得之檢體,如唾液檢體、痰液檢體、尿液檢體、糞便檢體等,但不限於此。於此實施例中,本揭露之GAPDH核酸偵測套組可搭配一恆溫反應機器與一簡易分析試片,如側流免疫分析試片(lateral flow immunoassay test strip),而達成居家檢驗。In one embodiment, the source of the sample to be tested can be a sample obtained by non-invasive sampling, such as a saliva sample, a sputum sample, a urine sample, a feces sample, etc., but not limited thereto. In this embodiment, the GAPDH nucleic acid detection kit disclosed herein can be used in conjunction with a thermostatic reaction machine and a simple analysis strip, such as a lateral flow immunoassay test strip, to achieve home testing.
又,上述本揭露之GAPDH核酸偵測套組中的偵測GAPDH核酸之引子組,可以單股RNA或第一股cDNA(first strand cDNA)為起始模板,進行上述恆溫環型核酸擴增法,但不限於此。Furthermore, the primer set for detecting GAPDH nucleic acid in the GAPDH nucleic acid detection kit disclosed herein can be used for the constant temperature circular nucleic acid amplification method using single strand RNA or first strand cDNA as the starting template, but is not limited thereto.
本揭露之GAPDH核酸偵測套組中的偵測GAPDH核酸之引子組的設計係根據一恆溫環型擴增法,但所設計出之引子組,並非僅適用於恆溫環型擴增法。上述本揭露之GAPDH核酸偵測套組中的偵測GAPDH核酸之引子組的設計與其操作原理,如第1A圖、第1B圖與第1C圖所示。The design of the primer set for detecting GAPDH nucleic acid in the GAPDH nucleic acid detection kit disclosed herein is based on a constant temperature cyclic amplification method, but the designed primer set is not only applicable to the constant temperature cyclic amplification method. The design and operation principle of the primer set for detecting GAPDH nucleic acid in the GAPDH nucleic acid detection kit disclosed herein are shown in FIG. 1A, FIG. 1B and FIG. 1C.
參見第1A圖、第1B圖與第1C圖。由第1A圖可知,在一標的核酸(如RNA序列)100中選出了六個區域,分別為F1區域、F2區域、F3區域、B1c區域、B2c區域與B3c區域(其互補股分別為F1c區域、F2c區域、F3c區域、B1區域、B2區域與B3區域)。於此方法中,採用四條引子,分別為經特殊設計之順向內引子(forward internal primer, FIP) 101、順向外引子(forward outer primer) 103、逆向內引子(backward internal primer, BIP) 105與逆向外引子(backward outer primer) 107,其中順向內引子101之序列為由一第一片段(F1區域之序列的互補股,即F1c區域的序列)與一第二片段(F2區域之序列)所組成,順向外引子103之序列為F3區域之序列,而逆向內引子105之序列為由一第三片段(B1c區域之序列,即B1區域之序列的互補股)與一第四片段(B2c區域之序列的互補股,即B2區域之序列)所組成,逆向外引子107之序列為B3c區域之序列的互補股(即B3區域之序列)。See Figure 1A, Figure 1B and Figure 1C. As shown in Figure 1A, six regions are selected from a target nucleic acid (such as an RNA sequence) 100, namely, the F1 region, the F2 region, the F3 region, the B1c region, the B2c region and the B3c region (the complementary strands are the F1c region, the F2c region, the F3c region, the B1 region, the B2 region and the B3 region). In this method, four primers are used, namely, a specially designed forward internal primer (FIP) 101, a forward outer primer (forward outer primer) 103, a backward internal primer (BIP) 105 and a backward outer primer (backward outer primer) 107, wherein the sequence of the forward inner primer 101 is composed of a first fragment (the complementary strand of the sequence of the F1 region, i.e., the sequence of the F1c region) and a second fragment (the sequence of the F2 region), the sequence of the forward outer primer 103 is the sequence of the F3 region, and the sequence of the reverse inner primer 105 is composed of a third fragment (the sequence of the B1c region, i.e., the complementary strand of the sequence of the B1 region) and a fourth fragment (the complementary strand of the sequence of the B2c region, i.e., the sequence of the B2 region), and the sequence of the reverse outer primer 107 is the complementary strand of the sequence of the B3c region (i.e., the sequence of the B3 region).
在恆溫環型擴增法進行中,順向內引子101之第二片段(F2區域之序列)會黏附於上述標的核酸100之互補股(例如cDNA)的F2c區域而進行互補股合成反應,而合成出具有第一片段(F1區域之序列的互補股,即F1c區域的序列)、第二片段(F2區域之序列)、F1區域、B1c區域、B2c區域與B3c區域之序列的一第一股,又順向外引子103會將此股移開,另合成出具有F3區域、F2區域、F1區域、B1c區域、B2c區域與B3c區域之序列的一第二股。接著,逆向內引子105之第四片段(B2區域之序列)黏附於上述第一股之B2c區域,並以此第一股為模板而合成出具有B1c區域、B2區域、B1區域、F1c區域、F2c區域與F1區域之序列的一第三股。之後,逆向外引子107會將此第三股移開,另合成出具有B3區域、B2區域、B1區域、F1c區域、F2c區域與F1區域之序列的一第四股。而上述第三股之B1c區域與B1區域之間會產生自身黏附,且同樣地,F1區域與F1c區域之間也會會產生自身黏附,因此使第三股成為兩端皆形成有莖環(loop)的一股。然後順向內引子與逆向內引子依序依照此股及/或其互補股合成產物為模板持續進行互補股合成反應,而形成一具有複數個莖環之雙股產物(再次參見第1A圖與第1B圖)。During the isothermal cyclic amplification method, the second fragment (sequence of the F2 region) along the inner primer 101 will adhere to the F2c region of the complementary strand (e.g., cDNA) of the target nucleic acid 100 to undergo complementary strand synthesis reaction, thereby synthesizing a first strand having the sequence of the first fragment (the complementary strand of the sequence of the F1 region, i.e., the sequence of the F1c region), the second fragment (the sequence of the F2 region), the F1 region, the B1c region, the B2c region, and the B3c region. The outer primer 103 will move this strand away, thereby synthesizing a second strand having the sequence of the F3 region, the F2 region, the F1 region, the B1c region, the B2c region, and the B3c region. Next, the fourth fragment (sequence of the B2 region) of the reverse inner primer 105 adheres to the B2c region of the first strand, and a third strand having the sequence of the B1c region, the B2 region, the B1 region, the F1c region, the F2c region, and the F1 region is synthesized using the first strand as a template. Afterwards, the reverse outer primer 107 removes the third strand and synthesizes a fourth strand having the sequence of the B3 region, the B2 region, the B1 region, the F1c region, the F2c region, and the F1 region. The B1c region and the B1 region of the third strand will self-adhere, and similarly, the F1 region and the F1c region will also self-adhere, so that the third strand becomes a strand with stem loops formed at both ends. Then, the forward inner primer and the reverse inner primer sequentially carry out complementary strand synthesis reaction according to this strand and/or its complementary strand synthesis product as a template, thereby forming a double-stranded product with multiple stem loops (see Figure 1A and Figure 1B again).
此外,也可進一步於F1區域與F2區域之間設計順向環引子(forward loop primer, FLP)109,在B1c區域與B2c區域之間設計逆向環引子(backward loop primer, BLP)111,以提升恆溫環型核酸擴增法的效率(參見第1C圖)。In addition, a forward loop primer (FLP) 109 may be further designed between the F1 region and the F2 region, and a backward loop primer (BLP) 111 may be further designed between the B1c region and the B2c region to enhance the efficiency of the constant temperature circular nucleic acid amplification method (see FIG. 1C ).
因此,上述本揭露之GAPDH核酸偵測套組中的偵測GAPDH核酸之引子組至少可包括,一針對GAPDH核酸之順向內引子、一針對GAPDH核酸之順向外引子、一針對GAPDH核酸之逆向內引子與一針對GAPDH核酸之逆向外引子,但不限於此。Therefore, the primer set for detecting GAPDH nucleic acid in the GAPDH nucleic acid detection kit disclosed above may include at least a forward inner primer for GAPDH nucleic acid, a forward outer primer for GAPDH nucleic acid, a reverse inner primer for GAPDH nucleic acid and a reverse outer primer for GAPDH nucleic acid, but is not limited thereto.
用於設計上述引子組之GAPDH核酸的序列可為序列識別號:1之核苷酸序列,其為一GAPDH之mRNA序列(NCBI獲取編號NM_001256799)的一部分,但不限於此。The sequence of the GAPDH nucleic acid used to design the above primer set may be the nucleotide sequence of sequence identification number: 1, which is a part of a GAPDH mRNA sequence (NCBI accession number NM_001256799), but is not limited thereto.
上述針對GAPDH核酸之順向內引子可由一第一片段與一第二片段所組成,而上述第一片段之3’端連接上述第二片段的5’端,或上述針對GAPDH核酸之順向內引子可由一第一片段、一第一連接子與一第二片段所組成,而上述第一片段之3’端連接上述第一連接子之5’端,且上述第一連接子之3’端連接上述第二片段之5’端。上述第一片段可具有約10-30個核苷酸,且可由一第一序列區段之互補股所組成,又上述第一序列區段可位於序列識別號:1之核苷酸序列的第134個位點至第175個位點之間,但不限於此。上述第二片段可具有約10-30個核苷酸,且可由一第二序列區段所組成,又上述第二序列區段可位於序列識別號:1之核苷酸序列的第77個位點至第115個位點之間,但也不限於此。而上述第一連接子可包括約1-6個胸腺嘧啶(thymine, T)或肽核酸(peptide nucleic acid, PNA),但不限於此。The forward inner primer for GAPDH nucleic acid may be composed of a first segment and a second segment, and the 3' end of the first segment is connected to the 5' end of the second segment, or the forward inner primer for GAPDH nucleic acid may be composed of a first segment, a first linker and a second segment, and the 3' end of the first segment is connected to the 5' end of the first linker, and the 3' end of the first linker is connected to the 5' end of the second segment. The first segment may have about 10-30 nucleotides and may be composed of a complementary strand of a first sequence segment, and the first sequence segment may be located between the 134th position and the 175th position of the nucleotide sequence of sequence identification number: 1, but is not limited thereto. The second fragment may have about 10-30 nucleotides and may be composed of a second sequence segment, and the second sequence segment may be located between the 77th position and the 115th position of the nucleotide sequence of sequence identification number: 1, but is not limited thereto. The first linker may include about 1-6 thymines (T) or peptide nucleic acids (PNA), but is not limited thereto.
上述針對GAPDH核酸之順向外引子可具有約10-30個核苷酸,且可由為一第三序列區段所組成,而上述第三序列區段可位於序列識別號:1之核苷酸序列的第42個位點至第79個位點之間,但不限於此。The forward outer primer for GAPDH nucleic acid may have about 10-30 nucleotides and may be composed of a third sequence segment, and the third sequence segment may be located between the 42nd position and the 79th position of the nucleotide sequence of sequence identification number: 1, but is not limited thereto.
上述針對GAPDH核酸之逆向內引子可由一第三片段與一第四片段所組成,而上述第三片段之3’端連接上述第四片段的5’端,或上述針對GAPDH核酸之逆向內引子可由一第三片段、一第二連接子與一第四片段所組成,而上述第三片段之3’端連接上述第二連接子之5’端,且上述第二連接子之3’端連接上述第四片段之5’端。上述第三片段可具有約10-30個核苷酸,且可由一第四序列區段所組成,而上述第四序列區段可位於序列識別號:1之核苷酸序列的第156個位點至第207個位點之間,但不限於此。上述第四片段可具有約10-30個核苷酸,且可由一第五序列區段之互補股所組成,而上述第五序列區段可位於序列識別號:1之核苷酸序列的第211個位點至第250個位點之間,但也不限於此。而上述第二連接子可包括約1-6個胸腺嘧啶或肽核酸,但不限於此。The reverse inner primer for GAPDH nucleic acid may be composed of a third segment and a fourth segment, and the 3' end of the third segment is connected to the 5' end of the fourth segment, or the reverse inner primer for GAPDH nucleic acid may be composed of a third segment, a second linker and a fourth segment, and the 3' end of the third segment is connected to the 5' end of the second linker, and the 3' end of the second linker is connected to the 5' end of the fourth segment. The third segment may have about 10-30 nucleotides and may be composed of a fourth sequence segment, and the fourth sequence segment may be located between the 156th position and the 207th position of the nucleotide sequence of sequence identification number: 1, but is not limited thereto. The fourth segment may have about 10-30 nucleotides and may be composed of a complementary strand of a fifth sequence segment, and the fifth sequence segment may be located between the 211th position and the 250th position of the nucleotide sequence of sequence identification number: 1, but is not limited thereto. The second linker may include about 1-6 thymines or peptide nucleic acids, but is not limited thereto.
上述針對GAPDH核酸之逆向外引子可具有約10-30個核苷酸,且可由為一第六序列區段之互補股所組成,而上述第六序列區段可位於序列識別號:1之核苷酸序列的第238個位點至第275個位點之間,但不限於此。The reverse outer primer for GAPDH nucleic acid may have about 10-30 nucleotides and may be composed of a complementary strand of a sixth sequence segment, and the sixth sequence segment may be located between the 238th position and the 275th position of the nucleotide sequence of SEQ ID No.: 1, but is not limited thereto.
在一實施例中,於上述本揭露之GAPDH核酸偵測套組中的偵測GAPDH核酸之引子組中,上述第一序列區段可位於序列識別號:1之核苷酸序列的第139個位點至第170個位點之間,上述第二序列區段可位於序列識別號:1之核苷酸序列的第82個位點至第110個位點之間,上述第三序列區段可位於序列識別號:1之核苷酸序列的第47個位點至第74個位點之間,上述第四序列區段可位於序列識別號:1之核苷酸序列的第161個位點至第202個位點之間,上述第五序列區段可位於序列識別號:1之核苷酸序列的第216個位點至第245個位點之間,且上述第六序列區段可位於序列識別號:1之核苷酸序列的第243個位點至第270個位點之間。In one embodiment, in the primer set for detecting GAPDH nucleic acid in the GAPDH nucleic acid detection kit disclosed herein, the first sequence segment may be located between the 139th position and the 170th position of the nucleotide sequence of sequence identification number: 1, the second sequence segment may be located between the 82nd position and the 110th position of the nucleotide sequence of sequence identification number: 1, and the third sequence segment may be located between the 82nd position and the 110th position of the nucleotide sequence of sequence identification number: 1. The fourth sequence segment may be located between the 47th position and the 74th position of the nucleotide sequence of sequence identification number: 1, the fifth sequence segment may be located between the 216th position and the 245th position of the nucleotide sequence of sequence identification number: 1, and the sixth sequence segment may be located between the 243rd position and the 270th position of the nucleotide sequence of sequence identification number: 1.
又,在一特定實施例中,於上述本揭露之GAPDH核酸偵測套組中的偵測GAPDH核酸之引子組中,上述針對GAPDH核酸之順向內引子之序列可包括序列識別號:2之核苷酸序列,上述針對GAPDH核酸之順向外引子之序列可包括序列識別號:3之核苷酸序列,上述針對GAPDH核酸之逆向內引子之序列可包括序列識別號:4之核苷酸序列,序列識別號:6之核苷酸序列或序列識別號:7之核苷酸序列,且上述針對GAPDH核酸之逆向外引子之序列可包括序列識別號:5之核苷酸序列。Furthermore, in a specific embodiment, in the primer set for detecting GAPDH nucleic acid in the GAPDH nucleic acid detection kit disclosed above, the sequence of the forward inner primer for GAPDH nucleic acid may include the nucleotide sequence of sequence identification number: 2, the sequence of the forward outer primer for GAPDH nucleic acid may include the nucleotide sequence of sequence identification number: 3, the sequence of the reverse inner primer for GAPDH nucleic acid may include the nucleotide sequence of sequence identification number: 4, the nucleotide sequence of sequence identification number: 6 or the nucleotide sequence of sequence identification number: 7, and the sequence of the reverse outer primer for GAPDH nucleic acid may include the nucleotide sequence of sequence identification number: 5.
在另一實施例中,於上述本揭露之GAPDH核酸偵測套組中的偵測GAPDH核酸之引子組中,上述針對GAPDH核酸之順向內引子、上述針對GAPDH核酸之順向外引子、上述針對GAPDH核酸之逆向內引子與上述針對GAPDH核酸之逆向外引子的至少一者,以自其3’端起之第4個位點至第14個位點的任一個位點為起點之1至10個核苷酸可獨立地被肌苷(I)、鳥嘌呤(G)、尿嘧啶(U)等所取代,但不限於此。舉例來說,在一實施例中,於上述本揭露之GAPDH核酸偵測套組中的偵測GAPDH核酸之引子組中,上述針對GAPDH核酸之順向內引子、上述針對GAPDH核酸之順向外引子、上述針對GAPDH核酸之逆向內引子與上述針對GAPDH核酸之逆向外引子的至少一者,可包括,但不限於以下幾種取代情況:以自其3’端起之第5個位點至第9個位點的任一個位點為起點之2至7個核苷酸可獨立地被肌苷、鳥嘌呤、尿嘧啶等所取代、以自其3’端起之第7個位點為起點之3至5個核苷酸可獨立地被肌苷所取代、或以自其3’端起之第9個位點為起點之3至5個核苷酸可獨立地被肌苷所取代。例如,於上述本揭露之GAPDH核酸偵測套組中的偵測GAPDH核酸之引子組中,上述針對GAPDH核酸之逆向內引子之序列可包括序列識別號:8之核苷酸序列,或,例如,於上述本揭露之GAPDH核酸偵測套組中的偵測GAPDH核酸之引子組中,上述針對GAPDH核酸之逆向外引子之序列可包括序列識別號:9之核苷酸序列。此外,於一特定實施例中,於上述本揭露之GAPDH核酸偵測套組中的偵測GAPDH核酸之引子組中,上述針對GAPDH核酸之順向內引子之序列可包括序列識別號:2之核苷酸序列;上述針對GAPDH核酸之順向外引子之序列可包括序列識別號:3之核苷酸序列;上述針對GAPDH核酸之逆向內引子之序列可包括序列識別號:4之核苷酸序列,且上述針對GAPDH核酸之逆向外引子之序列可包括序列識別號:9之核苷酸序列。而於另一特定實施例中,於上述本揭露之GAPDH核酸偵測套組中的偵測GAPDH核酸之引子組中,上述針對GAPDH核酸之順向內引子之序列可包括序列識別號:2之核苷酸序列,上述針對GAPDH核酸之順向外引子之序列可包括序列識別號:3之核苷酸序列,上述針對GAPDH核酸之逆向內引子之序列可包括序列識別號:8之核苷酸序列,且上述針對GAPDH核酸之逆向外引子之序列可包括序列識別號:9之核苷酸序列。In another embodiment, in the primer set for detecting GAPDH nucleic acid in the GAPDH nucleic acid detection kit disclosed above, at least one of the forward inner primer for GAPDH nucleic acid, the forward outer primer for GAPDH nucleic acid, the reverse inner primer for GAPDH nucleic acid, and the reverse outer primer for GAPDH nucleic acid, starting from any one of the 4th to 14th positions from the 3' end thereof, 1 to 10 nucleotides can be independently substituted by inosine (I), guanine (G), uracil (U), etc., but is not limited thereto. For example, in one embodiment, in the primer set for detecting GAPDH nucleic acid in the GAPDH nucleic acid detection kit disclosed herein, at least one of the forward inner primer for GAPDH nucleic acid, the forward outer primer for GAPDH nucleic acid, the reverse inner primer for GAPDH nucleic acid, and the reverse outer primer for GAPDH nucleic acid may include, but is not limited to, the following substitutions: 2 to 7 nucleotides starting from any one of the 5th to 9th positions from the 3' end thereof may be independently substituted by inosine, guanine, uracil, etc., 3 to 5 nucleotides starting from the 7th position from the 3' end thereof may be independently substituted by inosine, or 3 to 5 nucleotides starting from the 9th position from the 3' end thereof may be independently substituted by inosine. For example, in the primer set for detecting GAPDH nucleic acid in the above-mentioned GAPDH nucleic acid detection kit disclosed herein, the sequence of the above-mentioned reverse inner primer for GAPDH nucleic acid may include the nucleotide sequence of sequence identification number: 8, or, for example, in the primer set for detecting GAPDH nucleic acid in the above-mentioned GAPDH nucleic acid detection kit disclosed herein, the sequence of the above-mentioned reverse outer primer for GAPDH nucleic acid may include the nucleotide sequence of sequence identification number: 9. In addition, in a specific embodiment, in the primer set for detecting GAPDH nucleic acid in the GAPDH nucleic acid detection kit disclosed above, the sequence of the forward inner primer for GAPDH nucleic acid may include the nucleotide sequence of sequence identification number: 2; the sequence of the forward outer primer for GAPDH nucleic acid may include the nucleotide sequence of sequence identification number: 3; the sequence of the reverse inner primer for GAPDH nucleic acid may include the nucleotide sequence of sequence identification number: 4, and the sequence of the reverse outer primer for GAPDH nucleic acid may include the nucleotide sequence of sequence identification number: 9. In another specific embodiment, in the primer set for detecting GAPDH nucleic acid in the GAPDH nucleic acid detection kit disclosed above, the sequence of the forward inner primer for GAPDH nucleic acid may include the nucleotide sequence of sequence identification number: 2, the sequence of the forward outer primer for GAPDH nucleic acid may include the nucleotide sequence of sequence identification number: 3, the sequence of the reverse inner primer for GAPDH nucleic acid may include the nucleotide sequence of sequence identification number: 8, and the sequence of the reverse outer primer for GAPDH nucleic acid may include the nucleotide sequence of sequence identification number: 9.
請參見第2A圖,其為本揭露之一實施例中之側流免疫分析試片之作用機制的示意圖。於第2A圖中,所示各元件的大小、數量、形狀及/或結構等皆僅用於示意與方便說明,並不用以代表各元件之實際大小、數量、形狀及/或結構等。在一實施例中,於上述本揭露之GAPDH核酸偵測套組中的偵測GAPDH核酸之引子組中,上述針對GAPDH核酸之逆向內引子BIP-G的5’端可標示有一第一標誌M1,而上述針對GAPDH核酸之順向內引子FIP-G的5’端可標示有一第二標誌M2,且其中上述第一標誌M1與上述第二標誌M2不同。上述第一標誌M1可包括生物素(biotin)、卵白素(avidin)、鏈親和素(streptavidin, SA)、長葉毛地黃配質(digoxigenin, DIG)、螢光素(fluorescein, FAM)等,但不限於此。上述第二標誌M2也可包括,但不限於,生物素、卵白素、鏈親和素、長葉毛地黃配質、螢光素等。又,於此實施例中,本揭露之GAPDH核酸偵測套組,除了上述偵測GAPDH核酸之引子組,還可更包括一側流免疫分析試片(lateral flow immunoassay test strip)200,但不限於此。上述側流免疫分析試片200之材質可包括,但不限於,硝化纖維(nitrocellulose)膜、尼龍(nylon)膜、聚偏二氟乙烯(polyvinylidene fluoride, PVDF)膜、聚醚碸(polyethersulfone,PES)膜等。Please refer to FIG. 2A, which is a schematic diagram of the mechanism of action of the lateral flow immunoassay test strip in one embodiment of the present disclosure. In FIG. 2A, the size, quantity, shape and/or structure of each element shown are only used for illustration and convenient description, and are not used to represent the actual size, quantity, shape and/or structure of each element. In one embodiment, in the primer set for detecting GAPDH nucleic acid in the GAPDH nucleic acid detection kit disclosed above, the 5' end of the reverse inner primer BIP-G for GAPDH nucleic acid can be marked with a first marker M1, and the 5' end of the forward inner primer FIP-G for GAPDH nucleic acid can be marked with a second marker M2, and wherein the first marker M1 is different from the second marker M2. The first marker M1 may include, but is not limited to, biotin, avidin, streptavidin (SA), digoxigenin (DIG), fluorescein (FAM), etc. The second marker M2 may also include, but is not limited to, biotin, avidin, streptavidin, digoxigenin, fluorescein, etc. In addition, in this embodiment, the GAPDH nucleic acid detection kit disclosed herein may further include a lateral flow immunoassay test strip 200 in addition to the primer set for detecting GAPDH nucleic acid, but is not limited to this. The material of the lateral flow immunoassay test strip 200 may include, but is not limited to, nitrocellulose membrane, nylon membrane, polyvinylidene fluoride (PVDF) membrane, polyethersulfone (PES) membrane, etc.
再次參見第2A圖。上述側流免疫分析試片200依據分析物流動方向,依序可包括:一分析物添加區201、一結合區203、一GAPDH偵測區205與一試片控制區207。上述結合區203具有一第一結合顆粒203BP,其具有一第一結合分子203B與連接上述第一結合分子203B之一顆粒203P,其中上述第一結合分子203B具有結合上述第一標誌M1之能力。上述顆粒203P之材質可包括,但不限於,金、碳、乳膠、磁性物質等。或者,上述結合區203除了上述第一結合顆粒203BP,還可更包括塗覆有一特定物質的一控制顆粒CP(未顯示),控制顆粒CP之材質的例子可參考上方所述顆粒203P之材質,但於側流免疫分析試片200上,控制顆粒CP與顆粒203P兩者之材質可為相同或不同。又,上述特定物質並無特殊限制,只有一分子可與其結合即可,而上述特定物質的例子,可包括,但不限於,血清(如小鼠血清,但不限於此)。上述GAPDH偵測區205固定有一第二結合分子205B,其具有結合上述第二標誌M2之能力。又,上述試片控制區207固定有一第三結合分子207B,其具有結合上述第一結合顆粒203BP之上述第一結合分子203B的能力,其中上述第三結合分子207B與上述第一標誌M1可為相同或不同。或者,在上述結合區203除了第一結合顆粒203BP,還可更包括一控制顆粒CP(未顯示)的情況下,上述試片控制區207所固定之第三結合分子207B,其可為具有結合上述控制顆粒CP之上述特定物質的能力。例如塗覆控制顆粒之特定物質為小鼠血清時,第三結合分子207B可為抗小鼠血清抗體。Refer to Figure 2A again. The lateral flow immunoassay test strip 200 may include, in order according to the flow direction of the analyte: an analyte addition zone 201, a binding zone 203, a GAPDH detection zone 205 and a test strip control zone 207. The binding zone 203 has a first binding particle 203BP, which has a first binding molecule 203B and a particle 203P connected to the first binding molecule 203B, wherein the first binding molecule 203B has the ability to bind to the first marker M1. The material of the particle 203P may include, but is not limited to, gold, carbon, latex, magnetic substances, etc. Alternatively, the binding region 203 may further include a control particle CP (not shown) coated with a specific substance in addition to the first binding particle 203BP. The material of the control particle CP may refer to the material of the particle 203P described above, but on the lateral flow immunoassay test strip 200, the materials of the control particle CP and the particle 203P may be the same or different. In addition, the specific substance is not particularly limited, as long as there is a molecule that can bind to it, and the example of the specific substance may include, but is not limited to, serum (such as mouse serum, but not limited thereto). The GAPDH detection region 205 is fixed with a second binding molecule 205B, which has the ability to bind to the second marker M2. Furthermore, the test strip control area 207 is fixed with a third binding molecule 207B, which has the ability to bind to the first binding molecule 203B of the first binding particle 203BP, wherein the third binding molecule 207B and the first marker M1 may be the same or different. Alternatively, when the binding area 203 includes a control particle CP (not shown) in addition to the first binding particle 203BP, the third binding molecule 207B fixed to the test strip control area 207 may be the ability to bind to the specific substance of the control particle CP. For example, when the specific substance coating the control particle is mouse serum, the third binding molecule 207B may be an anti-mouse serum antibody.
以下說明第2A圖之示意圖所示之側流免疫分析試片200於操作時於各區發生的反應。參見第2A圖。當一待測樣本中含有GAPDH核酸時,將待測樣本以上述本揭露之GAPDH核酸偵測套組中的偵測GAPDH核酸之引子組經由恆溫環型核酸擴增法可獲得含GAPDH核酸擴增產物的一反應溶液,而GAPDH核酸擴增產物則具有第一標誌M1與第二標誌M2。將上述反應溶液添加於上述側流免疫分析試片200之分析物添加區201後,上述反應溶液會移動至上述結合區203,因此GAPDH核酸擴增產物之第一標誌M1會與上述結合區203中部分的第一結合顆粒203BP之第一結合分子203B結合,並與未與任何擴增產物結合之剩餘的第一結合顆粒203BP一併移動至上述GAPDH偵測區205。於上述GAPDH偵測區205,已與第一結合顆粒203BP之第一結合分子203B結合的GAPDH核酸擴增產物之第二標誌M2,會與固定於上述GAPDH偵測區205之第二結合分子205B結合,而使GAPDH核酸擴增產物停留於上述GAPDH偵測區205,並呈現第一結合顆粒203BP的顏色,而未與任何擴增產物結合之剩餘的第一結合顆粒203BP則繼續移動至上述試片控制區207。於上述試片控制區207中,未與任何擴增產物結合之剩餘的第一結合顆粒203BP之第一結合分子203B則會與固定於上述試片控制區207之第三結合分子207B結合,而使未與任何擴增產物結合之剩餘的第一結合顆粒203BP停留於試片控制區207,並呈現第一結合顆粒203BP的顏色。相對於此,當一待測樣本中並未含有GAPDH核酸時,將待測樣本以上述本揭露之GAPDH核酸偵測套組中的偵測GAPDH核酸之引子組經由恆溫環型核酸擴增法則會獲得不含GAPDH核酸擴增產物的一反應溶液。將上述反應溶液添加於上述側流免疫分析試片200之分析物添加區201後,上述反應溶液會移動至上述結合區203,但由於反應溶液中並不存在任何擴增產物,因此於上述結合區203之第一結合顆粒203BP並不會與任何擴增產物(如同時帶有第一標誌M1與第二標誌M2的擴增產物)結合,而是移動至上述GAPDH偵測區205。相似地,由於第一結合顆粒203BP並不會與任何擴增產物(如同時帶有第一標誌M1與第二標誌M2的擴增產物)結合,因此其並不會與固定於上述GAPDH偵測區205之第二結合分子205B結合而停留於上述GAPDH偵測區205並呈現其顏色。之後,第一結合顆粒203BP繼續移動至上述試片控制區207。於上述試片控制區207中,第一結合顆粒203BP之第一結合分子203B則會與固定於上述試片控制區207之第三結合分子207B結合,而使第一結合顆粒203BP停留於試片控制區207,並呈現第一結合顆粒203BP的顏色。The following describes the reactions occurring in various regions of the lateral flow immunoassay test strip 200 shown in the schematic diagram of FIG. 2A during operation. See FIG. 2A. When a sample to be tested contains GAPDH nucleic acid, the sample to be tested is subjected to a constant temperature cyclic nucleic acid amplification method using the primer set for detecting GAPDH nucleic acid in the GAPDH nucleic acid detection kit disclosed above to obtain a reaction solution containing a GAPDH nucleic acid amplification product, and the GAPDH nucleic acid amplification product has a first marker M1 and a second marker M2. After the reaction solution is added to the analyte addition area 201 of the lateral flow immunoassay test strip 200, the reaction solution moves to the binding area 203, so that the first marker M1 of the GAPDH nucleic acid amplification product binds to the first binding molecule 203B of a portion of the first binding particle 203BP in the binding area 203, and moves to the GAPDH detection area 205 together with the remaining first binding particle 203BP that is not bound to any amplification product. In the GAPDH detection area 205, the second marker M2 of the GAPDH nucleic acid amplification product that has bound to the first binding molecule 203B of the first binding particle 203BP will bind to the second binding molecule 205B fixed to the GAPDH detection area 205, so that the GAPDH nucleic acid amplification product stays in the GAPDH detection area 205 and presents the color of the first binding particle 203BP, while the remaining first binding particle 203BP that has not bound to any amplification product continues to move to the test piece control area 207. In the above-mentioned test chip control area 207, the first binding molecule 203B of the remaining first binding particle 203BP that has not been bound to any amplification product will bind to the third binding molecule 207B fixed to the above-mentioned test chip control area 207, so that the remaining first binding particle 203BP that has not been bound to any amplification product will stay in the test chip control area 207 and present the color of the first binding particle 203BP. In contrast, when a sample to be tested does not contain GAPDH nucleic acid, the sample to be tested is subjected to the constant temperature cycle nucleic acid amplification method using the primer set for detecting GAPDH nucleic acid in the above-mentioned GAPDH nucleic acid detection kit disclosed in the present invention to obtain a reaction solution that does not contain GAPDH nucleic acid amplification products. After the reaction solution is added to the analyte addition area 201 of the lateral flow immunoassay test strip 200, the reaction solution will move to the binding area 203. However, since there is no amplification product in the reaction solution, the first binding particle 203BP in the binding area 203 will not bind to any amplification product (such as the amplification product with the first marker M1 and the second marker M2 at the same time), but will move to the GAPDH detection area 205. Similarly, since the first binding particle 203BP does not bind to any amplified product (such as the amplified product with the first marker M1 and the second marker M2 at the same time), it does not bind to the second binding molecule 205B fixed to the GAPDH detection area 205 and stays in the GAPDH detection area 205 and displays its color. Afterwards, the first binding particle 203BP continues to move to the test chip control area 207. In the test chip control area 207, the first binding molecule 203B of the first binding particle 203BP binds to the third binding molecule 207B fixed to the test chip control area 207, so that the first binding particle 203BP stays in the test chip control area 207 and displays the color of the first binding particle 203BP.
在一特定實施例中,於上述本揭露之GAPDH核酸偵測套組中的偵測GAPDH核酸之引子組中,上述針對GAPDH核酸之逆向內引子BIP-G的5’端標示有生物素,而上述針對GAPDH核酸之順向內引子FIP-G的5’端標示有長葉毛地黃配質。又,於此特定實施例中,本揭露之GAPDH核酸偵測套組,除了上述偵測GAPDH核酸之引子組,還更包括上述側流免疫分析試片200,且於上述側流免疫分析試片200中,上述結合區203具有第一結合顆粒203BP,而第一結合顆粒之第一結合分子203B為卵白素,上述GAPDH偵測區205之第二結合分子205B為可辨識長葉毛地黃配質之抗體,而上述試片控制區207中之第三結合分子207B為生物素或可辨識卵白素之抗體。In a specific embodiment, in the primer set for detecting GAPDH nucleic acid in the GAPDH nucleic acid detection kit disclosed herein, the 5' end of the reverse inner primer BIP-G for GAPDH nucleic acid is labeled with biotin, and the 5' end of the forward inner primer FIP-G for GAPDH nucleic acid is labeled with foxgloveine. Furthermore, in this specific embodiment, the GAPDH nucleic acid detection kit disclosed herein, in addition to the primer set for detecting GAPDH nucleic acid, further includes the lateral flow immunoassay test strip 200, and in the lateral flow immunoassay test strip 200, the binding region 203 has a first binding particle 203BP, and the first binding molecule 203B of the first binding particle is avidin, the second binding molecule 205B of the GAPDH detection region 205 is an antibody that can recognize digitalis, and the third binding molecule 207B in the test strip control region 207 is biotin or an antibody that can recognize avidin.
又,於一實施例中,本揭露之GAPDH核酸偵測套組,除了上述偵測GAPDH核酸之引子組,還可更包括一聚合酶及/或核苷酸基質,但不限於此。上述聚合酶可具有反轉錄酶之功能,但也不限於此。在一特定實施例中,上述聚合酶為一 BstDNA聚合酶,例如,其序列包括序列識別號:10之胺基酸序列之一 BstDNA聚合酶,但不限於此。 Furthermore, in one embodiment, the GAPDH nucleic acid detection kit disclosed herein may further include a polymerase and/or a nucleotide substrate in addition to the primer set for detecting GAPDH nucleic acid, but is not limited thereto. The polymerase may have the function of a reverse transcriptase, but is not limited thereto. In a specific embodiment, the polymerase is a Bst DNA polymerase, for example, a Bst DNA polymerase whose sequence includes the amino acid sequence of sequence identification number: 10, but is not limited thereto.
又,於一實施例中,本揭露之GAPDH核酸偵測套組,除了上述偵測GAPDH核酸之引子組,也可更包括一反轉錄酶及/或核苷酸基質,但不限於此。上述反轉錄酶可具有一核糖核酸酶(RNase)之功能,但也不限於此。在一特定實施例中,上述反轉錄酶為可具有核糖核酸酶H(RNase H)之功能。Furthermore, in one embodiment, the GAPDH nucleic acid detection kit disclosed herein may further include a reverse transcriptase and/or a nucleotide substrate in addition to the primer set for detecting GAPDH nucleic acid, but is not limited thereto. The reverse transcriptase may have the function of a ribonuclease (RNase), but is not limited thereto. In a specific embodiment, the reverse transcriptase may have the function of ribonuclease H (RNase H).
本揭露還可提供一種標的核酸偵測套組,其可包括,但不限於,一偵測GAPDH核酸之引子組與一偵測標的核酸之引子組,其中上述偵測標的核酸之引子組的偵測標的不同於上述偵測GAPDH核酸之引子組的偵測標的。The present disclosure may also provide a target nucleic acid detection kit, which may include, but is not limited to, a primer set for detecting GAPDH nucleic acid and a primer set for detecting target nucleic acid, wherein the detection target of the primer set for detecting target nucleic acid is different from the detection target of the primer set for detecting GAPDH nucleic acid.
上述本揭露之標的核酸偵測套組中的偵測GAPDH核酸之引子組與偵測標的核酸之引子組,可分別用於一第一恆溫環型核酸擴增法與一第二恆溫環型核酸擴增法,以確認一待測樣本中是否存在標的核酸。The primer set for detecting GAPDH nucleic acid and the primer set for detecting target nucleic acid in the target nucleic acid detection kit disclosed above can be used in a first constant temperature cyclic nucleic acid amplification method and a second constant temperature cyclic nucleic acid amplification method, respectively, to confirm whether the target nucleic acid exists in a sample to be tested.
上述第一恆溫環型核酸擴增法與第二恆溫環型核酸擴增法,可包括,標準恆溫環型核酸擴增法或反轉錄恆溫環型核酸擴增法等,但不限於此。The first constant temperature circular nucleic acid amplification method and the second constant temperature circular nucleic acid amplification method may include, but are not limited to, a standard constant temperature circular nucleic acid amplification method or a reverse transcription constant temperature circular nucleic acid amplification method.
而上述待測樣本,可為一未經任何純化處理,例如未經核酸純化處理之樣本。亦即,藉由上述本揭露之標的核酸偵測套組中的偵測GAPDH核酸之引子組與偵測標的核酸之引子組,可對一未經任何純化處理之生物樣本,進行恆溫環型核酸擴增法,而獲得準確之標的核酸偵測結果,而可達成減少或免除處理待測樣本的效果。The sample to be tested may be a sample that has not been subjected to any purification treatment, such as a sample that has not been subjected to nucleic acid purification treatment. That is, by using the primer set for detecting GAPDH nucleic acid and the primer set for detecting target nucleic acid in the target nucleic acid detection kit disclosed above, a constant temperature cycle nucleic acid amplification method can be performed on a biological sample that has not been subjected to any purification treatment to obtain accurate target nucleic acid detection results, thereby achieving the effect of reducing or eliminating the need to process the sample to be tested.
上述待測樣本之來源可包括,但不限於,唾液檢體、痰液檢體、鼻腔拭子檢體、咽喉拭子檢體、鼻咽檢體、尿液檢體、糞便檢體、直腸拭子檢體、腦脊髓液檢體、體液檢體等。The sources of the above-mentioned samples to be tested may include, but are not limited to, saliva samples, sputum samples, nasal swab samples, throat swab samples, nasopharyngeal samples, urine samples, stool samples, rectal swab samples, cerebrospinal fluid samples, body fluid samples, etc.
在一實施例中,上述待測樣本之來源可為一非侵入式採樣所獲得之檢體,如唾液檢體、痰液檢體、尿液檢體、糞便檢體等,但不限於此。於此實施例中,本揭露之標的核酸偵測套組可搭配一恆溫反應機器、一恆溫加熱機器或一簡易分析試片,如側流免疫分析試片,而達成居家檢驗之目的。In one embodiment, the source of the sample to be tested can be a sample obtained by non-invasive sampling, such as a saliva sample, a sputum sample, a urine sample, a feces sample, etc., but not limited thereto. In this embodiment, the nucleic acid detection kit disclosed herein can be used in conjunction with a constant temperature reaction machine, a constant temperature heating machine, or a simple analysis test strip, such as a lateral flow immunoassay test strip, to achieve the purpose of home testing.
又,上述本揭露之標的核酸偵測套組中的偵測GAPDH核酸之引子組與偵測標的核酸之引子組,皆可以單股RNA或第一股cDNA為起始模板,分別進行上述第一恆溫環型核酸擴增法與第二恆溫環型核酸擴增法,但不限於此。In addition, the primer set for detecting GAPDH nucleic acid and the primer set for detecting target nucleic acid in the target nucleic acid detection kit disclosed above can use single-stranded RNA or first-stranded cDNA as the starting template to perform the first constant temperature circular nucleic acid amplification method and the second constant temperature circular nucleic acid amplification method, respectively, but are not limited to this.
本揭露之標的核酸偵測套組中的偵測GAPDH核酸之引子組與偵測標的核酸之引子組的設計,係同樣根據一恆溫環型擴增法,但所設計出之引子組,並非僅適用於恆溫環型擴增法。本揭露之標的核酸偵測套組中的偵測GAPDH核酸之引子組與偵測標的核酸之引子組的設計與其操作原理,也如第1A圖、第1B圖與第1C圖所示。詳細之本揭露之標的核酸偵測套組中的偵測GAPDH核酸之引子組與偵測標的核酸之引子組的設計與其操作原理的說明,可參見前方段落中關於本揭露之GAPDH核酸偵測套組中的偵測GAPDH核酸之引子組之設計與操作原理的說明,因此不於此贅述。The design of the primer set for detecting GAPDH nucleic acid and the primer set for detecting target nucleic acid in the target nucleic acid detection kit of the present disclosure is also based on a constant temperature cyclic amplification method, but the designed primer set is not only applicable to the constant temperature cyclic amplification method. The design and operation principle of the primer set for detecting GAPDH nucleic acid and the primer set for detecting target nucleic acid in the target nucleic acid detection kit of the present disclosure are also shown in Figures 1A, 1B and 1C. For detailed description of the design and operation principle of the primer set for detecting GAPDH nucleic acid and the primer set for detecting target nucleic acid in the target nucleic acid detection kit of the present disclosure, please refer to the description of the design and operation principle of the primer set for detecting GAPDH nucleic acid in the GAPDH nucleic acid detection kit of the present disclosure in the previous paragraph, and therefore it will not be elaborated here.
因此,上述本揭露之標的核酸偵測套組中的偵測GAPDH核酸之引子組,可為任何上述之本揭露之GAPDH核酸偵測套組中的偵測GAPDH核酸之引子組,而上述本揭露之標的核酸偵測套組中的偵測標的核酸之引子組,則可包括一針對標的核酸之順向內引子、一針對標的核酸之順向外引子、一針對標的核酸之逆向內引子與一針對標的核酸之逆向外引子,但不限於此。Therefore, the primer set for detecting GAPDH nucleic acid in the target nucleic acid detection kit disclosed above can be any primer set for detecting GAPDH nucleic acid in the target nucleic acid detection kit disclosed above, and the primer set for detecting target nucleic acid in the target nucleic acid detection kit disclosed above can include a forward inner primer for the target nucleic acid, a forward outer primer for the target nucleic acid, a reverse inner primer for the target nucleic acid, and a reverse outer primer for the target nucleic acid, but is not limited thereto.
本揭露之標的核酸偵測套組中之偵測標的核酸之引子組的偵測標的,並無特別限制,只要其與本揭露之標的核酸偵測套組中的偵測GAPDH核酸之引子組不同即可。The detection target of the primer set for detecting the target nucleic acid in the target nucleic acid detection kit of the present disclosure is not particularly limited, as long as it is different from the primer set for detecting GAPDH nucleic acid in the target nucleic acid detection kit of the present disclosure.
在一實施例中,本揭露之標的核酸偵測套組中的偵測標的核酸之引子組的偵測標的可為一RNA病毒之核酸。上述RNA病毒的例子,可包括冠狀病毒(coronavirus)、流行感冒病毒(influenza virus)、人類免疫缺乏病毒(human immunodeficiency virus, HIV)、伊波拉病毒(Ebola virus)、C型肝炎病毒(hepatitis C virus, HCV),但不限於此。In one embodiment, the target of the primer set for detecting the target nucleic acid in the target nucleic acid detection kit disclosed herein may be a nucleic acid of an RNA virus. Examples of the above RNA viruses may include, but are not limited to, coronavirus, influenza virus, human immunodeficiency virus (HIV), Ebola virus, and hepatitis C virus (HCV).
而上述冠狀病毒可包括,但不限於,嚴重急性呼吸道症候群冠狀病毒(severe acute respiratory syndrome coronavirus, SARS-CoV)、嚴重急性呼吸道症候群冠狀病毒2型 (severe acute respiratory syndrome coronavirus 2, SARS-CoV-2)(新型冠狀病毒)、中東呼吸症候群冠狀病毒(middle east respiratory syndrome coronavirus, MERS-CoV)等。The above-mentioned coronaviruses may include, but are not limited to, severe acute respiratory syndrome coronavirus (SARS-CoV), severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) (novel coronavirus), Middle East respiratory syndrome coronavirus (MERS-CoV), etc.
此外,上述嚴重急性呼吸道症候群冠狀病毒2型(新型冠狀病毒)之核酸可包括,但不限於,ORF1ab範圍內之核酸(如,RdRp基因之核酸,但不限於此)、棘蛋白(spike protein, S)基因之核酸、套膜(envelope, E)基因之核酸、膜蛋白(membrane protein, M)基因之核酸、核蛋白(nucleoprotein, N)基因之核酸等。In addition, the nucleic acid of the above-mentioned severe acute respiratory syndrome coronavirus type 2 (novel coronavirus) may include, but is not limited to, nucleic acid within the range of ORF1ab (such as nucleic acid of RdRp gene, but not limited to this), nucleic acid of spike protein (S) gene, nucleic acid of envelope (E) gene, nucleic acid of membrane protein (M) gene, nucleic acid of nucleoprotein (N) gene, etc.
在一實施例中,本揭露之標的核酸偵測套組中的偵測標的核酸之引子組的偵測標的可為嚴重急性呼吸道症候群冠狀病毒2型(新型冠狀病毒)之RdRp基因的核酸。In one embodiment, the detection target of the primer set for detecting the target nucleic acid in the target nucleic acid detection kit disclosed herein may be the nucleic acid of the RdRp gene of severe acute respiratory syndrome coronavirus type 2 (novel coronavirus).
於本揭露之標的核酸偵測套組中的偵測標的核酸之引子組的偵測標的可為嚴重急性呼吸道症候群冠狀病毒2型(新型冠狀病毒)之RdRp基因的核酸的實施例中,用於設計上述引子組之RdRp基因之核酸的序列可為序列識別號:11之序列,其為嚴重急性呼吸道症候群冠狀病毒2型之ORF1ab之核酸序列(NCBI獲取編號MN908947)的一部分,但不限於此。In the embodiment in which the detection target of the primer set for detecting the target nucleic acid in the target nucleic acid detection kit disclosed herein may be the nucleic acid of the RdRp gene of severe acute respiratory syndrome coronavirus type 2 (novel coronavirus), the sequence of the nucleic acid of the RdRp gene used to design the above-mentioned primer set may be a sequence identification number: 11, which is a part of the nucleic acid sequence of ORF1ab of severe acute respiratory syndrome coronavirus type 2 (NCBI accession number MN908947), but is not limited thereto.
於本揭露之標的核酸偵測套組中的偵測標的核酸之引子組的偵測標的可為嚴重急性呼吸道症候群冠狀病毒2型(新型冠狀病毒)之RdRp基因之核酸的實施例中,上述針對標的核酸之順向內引子可由一第五片段與一第六片段所組成,而上述第五片段之3’端連接上述第六片段的5’端,或上述針對標的核酸之順向內引子係由一第五片段、一第三連接子與一第六片段所組成,而上述第五片段之3’端連接上述第三連接子之5’端,且上述第三連接子之3’端連接上述第六片段之5’端。上述第五片段可具有約10-30個核苷酸,且可由一第七序列區段之互補股所組成,又上述第七序列區段可位於序列識別號:11之核苷酸序列的第90個位點至第134個位點之間,但不限於此。上述第六片段可具有約10-30個核苷酸,且可由一第八序列區段所組成,又上述第八序列區段可位於序列識別號:11之核苷酸序列的第45個位點至第82個位點之間,但也不限於此。而上述第三連接子可包括約1-6個胸腺嘧啶或肽核酸,但不限於此。In an embodiment in which the detection target of the primer set for detecting the target nucleic acid in the target nucleic acid detection kit disclosed herein may be a nucleic acid of the RdRp gene of severe acute respiratory syndrome coronavirus type 2 (novel coronavirus), the forward inner primer for the target nucleic acid may be composed of a fifth segment and a sixth segment, and the 3' end of the fifth segment is connected to the 5' end of the sixth segment, or the forward inner primer for the target nucleic acid is composed of a fifth segment, a third linker and a sixth segment, and the 3' end of the fifth segment is connected to the 5' end of the third linker, and the 3' end of the third linker is connected to the 5' end of the sixth segment. The fifth segment may have about 10-30 nucleotides and may be composed of a complementary strand of a seventh sequence segment, and the seventh sequence segment may be located between the 90th position and the 134th position of the nucleotide sequence of SEQ ID NO: 11, but not limited thereto. The sixth segment may have about 10-30 nucleotides and may be composed of an eighth sequence segment, and the eighth sequence segment may be located between the 45th position and the 82nd position of the nucleotide sequence of SEQ ID NO: 11, but not limited thereto. The third linker may include about 1-6 thymines or peptide nucleic acid, but not limited thereto.
又,上述針對標的核酸之順向外引子可具有約10-30個核苷酸,且可由為一第九序列區段所組成,而上述第九序列區段可位於序列識別號:11之核苷酸序列的第27個位點至第64個位點之間,但不限於此。Furthermore, the forward outer primer targeting the target nucleic acid may have about 10-30 nucleotides and may be composed of a ninth sequence segment, and the ninth sequence segment may be located between the 27th position and the 64th position of the nucleotide sequence of sequence identification number: 11, but is not limited thereto.
上述針對標的核酸之逆向內引子可由一第七片段與一第八片段所組成,而上述第七片段之3’端連接上述第八片段的5’端,或上述針對標的核酸之逆向內引子係由一第七片段、一第四連接子與一第八片段所組成,而上述第七片段之3’端連接上述第四連接子之5’端,且上述第四連接子之3’端連接上述第八片段之5’端。上述第七片段可具有約10-30個核苷酸,且可由一第十序列區段所組成,而上述第十序列區段可位於序列識別號:11之核苷酸序列的第123個位點至第165個位點之間,但不限於此。上述第八片段可具有約10-30個核苷酸,且可由一第十一序列區段之互補股所組成,而上述第十一序列區段可位於序列識別號:11之核苷酸序列的第170個位點至第208個位點之間,但也不限於此。而上述第四連接子可包括約1-6個胸腺嘧啶或肽核酸,但不限於此。The reverse inner primer for the target nucleic acid may be composed of a seventh segment and an eighth segment, and the 3' end of the seventh segment is connected to the 5' end of the eighth segment, or the reverse inner primer for the target nucleic acid is composed of a seventh segment, a fourth linker and an eighth segment, and the 3' end of the seventh segment is connected to the 5' end of the fourth linker, and the 3' end of the fourth linker is connected to the 5' end of the eighth segment. The seventh segment may have about 10-30 nucleotides and may be composed of a tenth sequence segment, and the tenth sequence segment may be located between the 123rd position and the 165th position of the nucleotide sequence of sequence identification number: 11, but is not limited thereto. The eighth segment may have about 10-30 nucleotides and may be composed of a complementary strand of an eleventh sequence segment, and the eleventh sequence segment may be located between the 170th position and the 208th position of the nucleotide sequence of sequence identification number: 11, but is not limited thereto. The fourth linker may include about 1-6 thymines or peptide nucleic acids, but is not limited thereto.
上述針對標的核酸之逆向外引子可具有約10-30個核苷酸,且可由為一第十二序列區段之互補股所組成,而上述第十二序列區段可位於序列識別號:11之核苷酸序列的第226個位點至第263個位點之間,但不限於此。The reverse exon primer for the target nucleic acid may have about 10-30 nucleotides and may be composed of a complementary strand of a twelfth sequence segment, and the twelfth sequence segment may be located between the 226th position and the 263rd position of the nucleotide sequence of sequence identification number: 11, but is not limited thereto.
於本揭露之標的核酸偵測套組中的偵測標的核酸之引子組的偵測標的可為嚴重急性呼吸道症候群冠狀病毒2型(新型冠狀病毒)之RdRp基因之核酸的實施例中,於一特定實施例中,於上述本揭露之偵測標的核酸之套組中的偵測標的核酸之引子組中,上述第七序列區段可位於序列識別號:11之核苷酸序列的第95個位點至第129個位點之間,上述第八序列區段可位於序列識別號:11之核苷酸序列的第50個位點至第77個位點之間,上述第九序列區段可位於序列識別號:11之核苷酸序列的第32個位點至第59個位點之間,上述第十序列區段可位於序列識別號:11之核苷酸序列的第128個位點至第150個位點之間,上述第十一序列區段可位於序列識別號:11之核苷酸序列的第175個位點至第203個位點之間,且上述第十二序列區段可位於序列識別號:11之核苷酸序列的第231個位點至第258個位點之間。In the embodiment in which the detection target of the primer set of the target nucleic acid detection kit of the present disclosure may be the nucleic acid of the RdRp gene of severe acute respiratory syndrome coronavirus type 2 (novel coronavirus), in a specific embodiment, in the primer set of the target nucleic acid detection kit of the present disclosure, the seventh sequence segment may be located between the 95th position and the 129th position of the nucleotide sequence of sequence identification number: 11, and the eighth sequence segment may be located at the 50th position of the nucleotide sequence of sequence identification number: 11. The ninth sequence segment may be located between the 32nd and 59th positions of the nucleotide sequence of sequence identification number: 11, the tenth sequence segment may be located between the 128th and 150th positions of the nucleotide sequence of sequence identification number: 11, the eleventh sequence segment may be located between the 175th and 203rd positions of the nucleotide sequence of sequence identification number: 11, and the twelfth sequence segment may be located between the 231st and 258th positions of the nucleotide sequence of sequence identification number: 11.
或者,於本揭露之標的核酸偵測套組中的偵測標的核酸之引子組的偵測標的可為嚴重急性呼吸道症候群冠狀病毒2型(新型冠狀病毒)之RdRp基因之核酸的實施例中,對於一特定實施例而言,於上述本揭露之偵測標的核酸之套組中的偵測標的核酸之引子組中,上述針對標的核酸之順向內引子之序列可包括序列識別號:12之核苷酸序列,上述針對標的核酸之順向外引子之序列可包括序列識別號:13之核苷酸序列,上述針對標的核酸之逆向內引子之序列可包括序列識別號:14之核苷酸序列,且上述針對標的核酸之逆向外引子之序列可包括序列識別號:15之核苷酸序列。Alternatively, in an embodiment in which the detection target of the primer set for detecting the target nucleic acid in the target nucleic acid detection kit disclosed herein may be the nucleic acid of the RdRp gene of severe acute respiratory syndrome coronavirus type 2 (novel coronavirus), for a specific embodiment, in the primer set for detecting the target nucleic acid in the above-mentioned target nucleic acid detection kit disclosed herein, the sequence of the forward inner primer for the target nucleic acid may include a nucleotide sequence of sequence identification number: 12, the sequence of the forward outer primer for the target nucleic acid may include a nucleotide sequence of sequence identification number: 13, the sequence of the reverse inner primer for the target nucleic acid may include a nucleotide sequence of sequence identification number: 14, and the sequence of the reverse outer primer for the target nucleic acid may include a nucleotide sequence of sequence identification number: 15.
於本揭露之標的核酸偵測套組中的偵測標的核酸之引子組的偵測標的可為嚴重急性呼吸道症候群冠狀病毒2型(新型冠狀病毒)之RdRp基因之核酸的實施例中,對於一特定實施例而言,上述偵測標的核酸之引子組可更包括一針對標的核酸之順向環引子與一針對標的核酸之逆向環引子,但不限於此。In an embodiment in which the detection target of the primer set for detecting the target nucleic acid in the target nucleic acid detection kit disclosed herein may be the nucleic acid of the RdRp gene of severe acute respiratory syndrome coronavirus type 2 (novel coronavirus), for a specific embodiment, the primer set for detecting the target nucleic acid may further include a forward loop primer for the target nucleic acid and a reverse loop primer for the target nucleic acid, but is not limited to this.
上述針對標的核酸之順向環引子可具有約10-30個核苷酸,且可由為一第十三序列區段所組成,而上述第十三序列區段可位於序列識別號:11之核苷酸序列的第63個位點至第104個位點之間。上述針對標的核酸之逆向環引子可具有約10-30個核苷酸,且可由為一第十四序列區段所組成,而上述第十四序列區段可位於序列識別號:11之核苷酸序列的第146個位點至第187個位點之間。或者,上述第十三序列區段可位於序列識別號:11之核苷酸序列的第68個位點至第99個位點之間,而上述第十四序列區段可位於序列識別號:11之核苷酸序列的第151個位點至第182個位點之間。The forward loop primer for the target nucleic acid may have about 10-30 nucleotides and may consist of a thirteenth sequence segment, and the thirteenth sequence segment may be located between the 63rd position and the 104th position of the nucleotide sequence of sequence identification number: 11. The reverse loop primer for the target nucleic acid may have about 10-30 nucleotides and may consist of a fourteenth sequence segment, and the fourteenth sequence segment may be located between the 146th position and the 187th position of the nucleotide sequence of sequence identification number: 11. Alternatively, the thirteenth sequence segment may be located between the 68th position and the 99th position of the nucleotide sequence of sequence identification number: 11, and the fourteenth sequence segment may be located between the 151st position and the 182nd position of the nucleotide sequence of sequence identification number: 11.
或者,於上述特定實施例中,本揭露之標的核酸偵測套組中的偵測標的核酸之引子組中之上述針對標的核酸之順向內引子之序列可包括序列識別號:12之核苷酸序列,上述針對標的核酸之順向外引子之序列可包括序列識別號:13之核苷酸序列,上述針對標的核酸之順向環引子之序列可包括序列識別號:16之核苷酸序列,上述針對標的核酸之逆向內引子之序列可包括序列識別號:14之核苷酸序列,上述針對標的核酸之逆向外引子之序列可包括序列識別號:15之核苷酸序列,且上述針對標的核酸之逆向環引子之序列可包括序列識別號:17之核苷酸序列。Alternatively, in the above-mentioned specific embodiment, the sequence of the forward inner primer for the target nucleic acid in the primer set for detecting the target nucleic acid in the target nucleic acid detection kit of the present disclosure may include a nucleotide sequence with sequence identification number: 12, the sequence of the forward outer primer for the target nucleic acid may include a nucleotide sequence with sequence identification number: 13, the sequence of the forward loop primer for the target nucleic acid may include a nucleotide sequence with sequence identification number: 16, the sequence of the reverse inner primer for the target nucleic acid may include a nucleotide sequence with sequence identification number: 14, the sequence of the reverse outer primer for the target nucleic acid may include a nucleotide sequence with sequence identification number: 15, and the sequence of the reverse loop primer for the target nucleic acid may include a nucleotide sequence with sequence identification number: 17.
在另一實施例中,於上述本揭露之偵測標的核酸之套組中的偵測標的核酸之引子組中,上述針對標的核酸之順向內引子、上述針對標的核酸之順向外引子、上述針對標的核酸之逆向內引子與上述針對標的核酸之逆向外引子的至少一者,以自其3’端起之第4個位點至第14個位點的任一個位點為起點之1至10個核苷酸可獨立地被肌苷(I)、鳥嘌呤(G)、尿嘧啶(U)等所取代,但不限於此。舉例來說,在一實施例中,於上述本揭露之偵測標的核酸之套組中的偵測標的核酸之引子組中,上述針對標的核酸之順向內引子、上述針對標的核酸之順向外引子、上述針對標的核酸之逆向內引子與上述針對標的核酸之逆向外引子的至少一者,可包括,但不限於以下幾種取代情況:以自其3’端起之第5個位點至第9個位點的任一個位點為起點之2至7個核苷酸可獨立地被肌苷、鳥嘌呤、尿嘧啶等所取代、以自其3’端起之第7個位點為起點之3至5個核苷酸可獨立地被肌苷所取代、或以自其3’端起之第9個位點為起點之3至5個核苷酸可獨立地被肌苷所取代。In another embodiment, in the primer set for detecting target nucleic acid in the kit for detecting target nucleic acid disclosed above, at least one of the forward inner primer for target nucleic acid, the forward outer primer for target nucleic acid, the reverse inner primer for target nucleic acid, and the reverse outer primer for target nucleic acid, starting from any one of the 4th to 14th positions from the 3' end thereof, 1 to 10 nucleotides can be independently replaced by inosine (I), guanine (G), uracil (U), etc., but is not limited thereto. For example, in one embodiment, in the primer set for detecting target nucleic acid in the above-mentioned kit for detecting target nucleic acid of the present disclosure, at least one of the above-mentioned forward inner primer for target nucleic acid, the above-mentioned forward outer primer for target nucleic acid, the above-mentioned reverse inner primer for target nucleic acid and the above-mentioned reverse outer primer for target nucleic acid may include, but is not limited to, the following substitutions: 2 to 7 nucleotides starting from any one of the 5th to 9th positions from its 3' end may be independently substituted by inosine, guanine, uracil, etc., 3 to 5 nucleotides starting from the 7th position from its 3' end may be independently substituted by inosine, or 3 to 5 nucleotides starting from the 9th position from its 3' end may be independently substituted by inosine.
第2B圖與第2C圖為於不同實施例中之側流免疫分析試片之作用機制的示意圖。於第2B圖與第2C圖中,所示各元件的大小、數量、形狀及/或結構等皆僅用於示意與方便說明,並不用以代表各元件之實際大小、數量、形狀及/或結構等。FIG. 2B and FIG. 2C are schematic diagrams of the mechanism of action of the lateral flow immunoassay test strip in different embodiments. In FIG. 2B and FIG. 2C, the size, quantity, shape and/or structure of each component shown are only used for illustration and convenience of description, and do not represent the actual size, quantity, shape and/or structure of each component.
在一實施例中,於上述本揭露之偵測標的核酸之套組中,上述針對GAPDH核酸之逆向內引子BIP-G的5’端與上述針對標的核酸之逆向內引子BIP-T的5’端標示有一第一標誌M1,上述針對GAPDH核酸之順向內引子FIP-G的5’端標示有一第二標誌M2,上述針對標的核酸之順向內引子FIP-T的5’端標示有一第三標誌M3,其中上述第一標誌M1、上述第二標誌M2與上述第三標誌M3皆不同。上述第一標誌M1可包括生物素、卵白素、鏈親和素、長葉毛地黃配質、螢光素等,但不限於此。上述第二標誌M2也可包括,但不限於,生物素、卵白素、鏈親和素、長葉毛地黃配質、螢光素等。相似地,上述第三標誌M3也可包括,但不限於,生物素、卵白素、鏈親和素、長葉毛地黃配質、螢光素等。又,於此實施例中,本揭露之偵測標的核酸之套組,除了上述偵測GAPDH核酸之引子組與上述偵測標的核酸之引子組,還可更包括一側流免疫分析試片200’或200’’,但不限於此。上述側流免疫分析試片200’或200’’之材質可包括,但不限於,硝化纖維膜、尼龍膜、聚偏二氟乙烯膜、聚醚碸膜等。In one embodiment, in the kit for detecting target nucleic acid disclosed above, the 5' end of the reverse inner primer BIP-G for GAPDH nucleic acid and the 5' end of the reverse inner primer BIP-T for target nucleic acid are marked with a first marker M1, the 5' end of the forward inner primer FIP-G for GAPDH nucleic acid is marked with a second marker M2, and the 5' end of the forward inner primer FIP-T for target nucleic acid is marked with a third marker M3, wherein the first marker M1, the second marker M2 and the third marker M3 are all different. The first marker M1 may include biotin, avidin, streptavidin, luciferin, fluorescein, etc., but is not limited thereto. The second marker M2 may also include, but not limited to, biotin, avidin, streptavidin, glutinosin, luciferin, etc. Similarly, the third marker M3 may also include, but not limited to, biotin, avidin, streptavidin, glutinosin, luciferin, etc. Furthermore, in this embodiment, the target nucleic acid detection kit disclosed herein may further include a lateral flow immunoassay test strip 200' or 200'' in addition to the primer set for detecting GAPDH nucleic acid and the primer set for detecting target nucleic acid, but not limited thereto. The material of the lateral flow immunoassay test strip 200' or 200'' may include, but not limited to, nitrocellulose membrane, nylon membrane, polyvinylidene fluoride membrane, polyether sulfide membrane, etc.
請再次參見第2B圖與第2C圖。上述側流免疫分析試片200’或200’’根據分析物流動方向,依序可包括:一分析物添加區201、一結合區203、一GAPDH偵測區205、一標的核酸偵測區206與一試片控制區207(側流免疫分析試片200’),或依序可包括一分析物添加區201、一結合區203、一標的核酸偵測區206、一GAPDH偵測區205與一試片控制區207(側流免疫分析試片200’’)。上述結合區具有一第一結合顆粒,其中上述第一結合顆粒203BP具有一第一結合分子203B與連接上述第一結合分子203B之一顆粒203P,而上述第一結合分子203B具有結合上述第一標誌M1之能力。上述顆粒203P之材質可包括,但不限於,金、碳、乳膠、磁性物質等。或者,上述結合區203除了上述第一結合顆粒203BP,還可更包括塗覆有一特定物質的一控制顆粒CP(未顯示)控制顆粒CP之材質的例子可參考上方所述顆粒203P之材質,但於側流免疫分析試片200’或200’’上,控制顆粒CP與顆粒203P兩者之材質可為相同或不同。又,上述特定物質並無特殊限制,只有一分子可與其結合即可,而上述特定物質的例子,可包括,但不限於,血清(如小鼠血清,但不限於此)。上述GAPDH偵測區205固定有一第二結合分子205B,其具有結合上述第二標誌M2之能力。而上述試片控制區207固定有一第三結合分子207B,其具有結合上述第一結合顆粒203BP之上述第一結合分子203B的能力,其中上述第三結合分子207B與上述第一標誌M1可為相同或不同。或者,在上述結合區203除了第一結合顆粒203BP,還可更包括一控制顆粒CP(未顯示)的情況下,上述試片控制區207所固定之第三結合分子207B,其可為具有結合上述控制顆粒CP之上述特定物質的能力。例如塗覆控制顆粒之特定物質為小鼠血清時,第三結合分子207B可為抗小鼠血清抗體。又,上述標的核酸偵測區206固定有一第四結合分子206B,其具有結合上述第三標誌M3之能力。Please refer to Figure 2B and Figure 2C again. The lateral flow immunoassay test strip 200' or 200'' may include, according to the flow direction of the analyte, an analyte addition zone 201, a binding zone 203, a GAPDH detection zone 205, a target nucleic acid detection zone 206, and a test strip control zone 207 (lateral flow immunoassay test strip 200'), or may include, according to the flow direction of the analyte, an analyte addition zone 201, a binding zone 203, a target nucleic acid detection zone 206, a GAPDH detection zone 205, and a test strip control zone 207 (lateral flow immunoassay test strip 200''). The binding region has a first binding particle, wherein the first binding particle 203BP has a first binding molecule 203B and a particle 203P connected to the first binding molecule 203B, and the first binding molecule 203B has the ability to bind to the first marker M1. The material of the particle 203P may include, but is not limited to, gold, carbon, latex, magnetic material, etc. Alternatively, the binding region 203 may include, in addition to the first binding particle 203BP, a control particle CP (not shown) coated with a specific substance. The material of the control particle CP can refer to the material of the particle 203P described above, but on the lateral flow immunoassay test strip 200' or 200'', the materials of the control particle CP and the particle 203P may be the same or different. Furthermore, the above-mentioned specific substance is not particularly limited, as long as there is a molecule that can bind to it, and examples of the above-mentioned specific substance may include, but are not limited to, serum (such as mouse serum, but not limited thereto). The above-mentioned GAPDH detection area 205 is fixed with a second binding molecule 205B, which has the ability to bind to the above-mentioned second marker M2. The above-mentioned test piece control area 207 is fixed with a third binding molecule 207B, which has the ability to bind to the above-mentioned first binding molecule 203B of the above-mentioned first binding particle 203BP, wherein the above-mentioned third binding molecule 207B and the above-mentioned first marker M1 may be the same or different. Alternatively, in the case where the above-mentioned binding area 203 may further include a control particle CP (not shown) in addition to the first binding particle 203BP, the third binding molecule 207B fixed to the above-mentioned test piece control area 207 may be the above-mentioned specific substance that has the ability to bind to the above-mentioned control particle CP. For example, when the specific substance coating the control particle is mouse serum, the third binding molecule 207B can be an anti-mouse serum antibody. In addition, the target nucleic acid detection region 206 is fixed with a fourth binding molecule 206B, which has the ability to bind to the third marker M3.
以下說明第2B圖之示意圖所示之側流免疫分析試片200’於操作時於各區發生的反應。參見第2B圖。當一待測樣本中含有GAPDH核酸與標的核酸時,將待測樣本以上述本揭露之標的核酸偵測套組中的偵測GAPDH核酸之引子組與偵測標的核酸之引子組分別經由第一恆溫環型核酸擴增法與第二恆溫環型核酸擴增法可獲得含GAPDH核酸擴增產物的一第一反應溶液與含標的核酸擴增產物的一第二反應溶液,而GAPDH核酸擴增產物具有第一標誌M1與第二標誌M2,標的核酸擴增產物具有第一標誌M1與第三標誌M3。將上述第一反應溶液與第二反應溶液混合,獲得一混合反應溶液。將上述混合反應溶液添加於上述側流免疫分析試片200’之分析物添加區201後,上述反應溶液會移動至上述結合區203,因此GAPDH核酸擴增產物之第一標誌M1與標的核酸擴增產物之第一標誌M1分別皆會與上述結合區203中部分的第一結合顆粒203BP之第一結合分子203B結合,並與未與任何擴增產物結合之剩餘的第一結合顆粒203BP一併移動至上述GAPDH偵測區205。於上述GAPDH偵測區205,已與第一結合顆粒203BP之第一結合分子203B結合的GAPDH核酸擴增產物之第二標誌M2,會與固定於上述GAPDH偵測區205之第二結合分子205B結合,而使GAPDH擴增產物停留於上述GAPDH偵測區205,並呈現第一結合顆粒203BP的顏色,而已與第一結合顆粒203BP之第一結合分子203B結合的標的核酸擴增產物及未與任何擴增產物結合之剩餘的第一結合顆粒203BP則繼續移動至上述一標的核酸偵測區206。於上述標的核酸偵測區206,已與第一結合顆粒203BP之第一結合分子203B結合的標的核酸擴增產物之第三標誌M3,會與固定於上述標的核酸偵測區206之第四結合分子206B結合,而使標的核酸擴增產物停留於標的核酸偵測區206,並呈現第一結合顆粒203BP的顏色,而未與任何擴增產物結合之剩餘的第一結合顆粒203BP則繼續移動至上述試片控制區207。於上述試片控制區207中,未與任何擴增產物結合之剩餘的第一結合顆粒203BP之第一結合分子203B則會與固定於上述試片控制區207之第三結合分子207B結合,而使未與任何擴增產物結合之剩餘第一結合顆粒203BP停留於試片控制區207,並呈現並呈現第一結合顆粒203BP的顏色。相對地,當一待測樣本中含有GAPDH核酸但不含標的核酸時,將待測樣本以上述本揭露之標的核酸偵測套組中的偵測GAPDH核酸之引子組與偵測標的核酸之引子組分別經由第一恆溫環型核酸擴增法與第二恆溫環型核酸擴增法可獲得含GAPDH核酸擴增產物的一第一反應溶液與不含標的核酸擴增產物的一第二反應溶液,而GAPDH核酸擴增產物具有第一標誌M1與第二標誌M2。將上述第一反應溶液與第二反應溶液混合,獲得一混合反應溶液。將上述混合反應溶液添加於上述側流免疫分析試片200’之分析物添加區201後,上述反應溶液會移動至上述結合區203,因此GAPDH核酸擴增產物之第一標誌M1會與上述結合區203中部分的第一結合顆粒203BP之第一結合分子203B結合,並與未與任何擴增產物結合之剩餘的第一結合顆粒203BP一併移動至上述GAPDH偵測區205。於上述GAPDH偵測區205,已與第一結合顆粒203BP之第一結合分子203B結合的GAPDH核酸擴增產物之第二標誌M2,會與固定於上述GAPDH偵測區205之第二結合分子205B結合,而使GAPDH擴增產物停留於上述GAPDH偵測區205,並呈現第一結合顆粒203BP的顏色,而未與任何擴增產物結合之剩餘的第一結合顆粒203BP則繼續移動至上述一標的核酸偵測區206。由於上述混合反應溶液中並不存在標的核酸擴增產物(同時帶有第一標誌M1與第三標誌M3之擴增產物),因此未與任何擴增產物結合之剩餘的第一結合顆粒203BP並不會與標的核酸擴增產物(同時帶有第一標誌M1與第三標誌M3之擴增產物)結合,且不會與固定於上述標的核酸偵測區206之第四結合分子206B結合而停留於上述標的核酸偵測區206並呈現其顏色。之後,剩餘之第一結合顆粒203BP繼續移動至上述試片控制區207。於上述試片控制區207中,剩餘之第一結合顆粒203BP之第一結合分子203B則會與固定於上述試片控制區207之第三結合分子207B結合,而使剩餘之第一結合顆粒203BP停留於試片控制區207,並呈現並呈現第一結合顆粒203BP的顏色。The following describes the reactions occurring in various regions of the lateral flow immunoassay test strip 200' shown in the schematic diagram of FIG2B during operation. See FIG2B. When a sample to be tested contains GAPDH nucleic acid and target nucleic acid, the sample to be tested is subjected to the first constant temperature cyclic nucleic acid amplification method and the second constant temperature cyclic nucleic acid amplification method respectively using the primer set for detecting GAPDH nucleic acid and the primer set for detecting target nucleic acid in the target nucleic acid detection kit disclosed herein to obtain a first reaction solution containing a GAPDH nucleic acid amplification product and a second reaction solution containing a target nucleic acid amplification product, wherein the GAPDH nucleic acid amplification product has a first marker M1 and a second marker M2, and the target nucleic acid amplification product has a first marker M1 and a third marker M3. The first reaction solution and the second reaction solution are mixed to obtain a mixed reaction solution. After the mixed reaction solution is added to the analyte addition area 201 of the lateral flow immunoassay test strip 200', the reaction solution moves to the binding area 203, so that the first marker M1 of the GAPDH nucleic acid amplification product and the first marker M1 of the target nucleic acid amplification product are respectively bound to the first binding molecule 203B of the first binding particle 203BP in the binding area 203, and move to the GAPDH detection area 205 together with the remaining first binding particle 203BP that is not bound to any amplification product. In the GAPDH detection region 205, the second marker M2 of the GAPDH nucleic acid amplification product that has bound to the first binding molecule 203B of the first binding particle 203BP will bind to the second binding molecule 205B fixed to the GAPDH detection region 205, so that the GAPDH amplification product stays in the GAPDH detection region 205 and presents the color of the first binding particle 203BP, while the target nucleic acid amplification product that has bound to the first binding molecule 203B of the first binding particle 203BP and the remaining first binding particle 203BP that has not bound to any amplification product continue to move to the target nucleic acid detection region 206. In the target nucleic acid detection area 206, the third marker M3 of the target nucleic acid amplification product that has bound to the first binding molecule 203B of the first binding particle 203BP will bind to the fourth binding molecule 206B fixed to the target nucleic acid detection area 206, so that the target nucleic acid amplification product stays in the target nucleic acid detection area 206 and presents the color of the first binding particle 203BP, while the remaining first binding particle 203BP that has not bound to any amplification product continues to move to the test strip control area 207. In the above-mentioned test chip control area 207, the first binding molecule 203B of the remaining first binding particle 203BP that has not been bound to any amplified product will bind to the third binding molecule 207B fixed on the above-mentioned test chip control area 207, so that the remaining first binding particle 203BP that has not been bound to any amplified product will stay in the test chip control area 207 and show the color of the first binding particle 203BP. In contrast, when a sample to be tested contains GAPDH nucleic acid but does not contain target nucleic acid, the sample to be tested is subjected to the first constant temperature cyclic nucleic acid amplification method and the second constant temperature cyclic nucleic acid amplification method respectively with the primer set for detecting GAPDH nucleic acid and the primer set for detecting target nucleic acid in the target nucleic acid detection kit disclosed herein to obtain a first reaction solution containing a GAPDH nucleic acid amplification product and a second reaction solution containing no target nucleic acid amplification product, and the GAPDH nucleic acid amplification product has a first marker M1 and a second marker M2. The first reaction solution and the second reaction solution are mixed to obtain a mixed reaction solution. After the mixed reaction solution is added to the analyte addition area 201 of the lateral flow immunoassay test strip 200', the reaction solution moves to the binding area 203, so that the first marker M1 of the GAPDH nucleic acid amplification product binds to the first binding molecule 203B of part of the first binding particle 203BP in the binding area 203, and moves to the GAPDH detection area 205 together with the remaining first binding particle 203BP that is not bound to any amplification product. In the GAPDH detection region 205, the second marker M2 of the GAPDH nucleic acid amplification product that has bound to the first binding molecule 203B of the first binding particle 203BP will bind to the second binding molecule 205B fixed to the GAPDH detection region 205, so that the GAPDH amplification product stays in the GAPDH detection region 205 and presents the color of the first binding particle 203BP, while the remaining first binding particle 203BP that has not bound to any amplification product continues to move to the first target nucleic acid detection region 206. Since the target nucleic acid amplification product (the amplification product with the first mark M1 and the third mark M3) does not exist in the mixed reaction solution, the remaining first binding particles 203BP that have not been bound to any amplification product will not be bound to the target nucleic acid amplification product (the amplification product with the first mark M1 and the third mark M3), and will not be bound to the fourth binding molecule 206B fixed to the target nucleic acid detection area 206, but will stay in the target nucleic acid detection area 206 and show its color. Afterwards, the remaining first binding particles 203BP continue to move to the test chip control area 207. In the above-mentioned test chip control area 207, the first binding molecule 203B of the remaining first binding particle 203BP will bind to the third binding molecule 207B fixed on the above-mentioned test chip control area 207, so that the remaining first binding particle 203BP stays in the test chip control area 207 and presents the color of the first binding particle 203BP.
第2C圖之示意圖所示之側流免疫分析試片200’’的各區反應原理與第2B圖之示意圖所示之側流免疫分析試片200’相似,因此不於此贅述。The reaction principles of each area of the lateral flow immunoassay test strip 200'' shown in the schematic diagram of Figure 2C are similar to those of the lateral flow immunoassay test strip 200' shown in the schematic diagram of Figure 2B, and therefore will not be described in detail here.
在一特定實施例中,於上述本揭露之偵測標的核酸之套組中的偵測GAPDH核酸之引子組與偵測標的核酸之引子組中,上述針對GAPDH核酸之逆向內引子BIP-G的5’端與上述針對標的核酸之逆向內引子BIP-T的5’端標示有生物素,而上述針對GAPDH核酸之順向內引子FIP-G的5’端標示有長葉毛地黃配質,且上述針對標的核酸之順向內引子FIP-T的5’端標示有螢光素。又,於此特定實施例中,本揭露之偵測標的核酸之套組,除了上述偵測GAPDH核酸之引子組與上述偵測標的核酸之引子組,還可更包括上述側流免疫分析試片200’或200’’,且於上述側流免疫分析試片中,上述結合區203具有第一結合顆粒203BP,而第一結合顆粒之第一結合分子203B為卵白素,上述GAPDH偵測區205之第二結合分子205B為可辨識長葉毛地黃配質之抗體,上述標的核酸偵測區206之第四結合分子206B為可辨識螢光素之抗體,而上述試片控制區207中之第三結合分子207B為生物素或可辨識卵白素之抗體。In a specific embodiment, in the primer set for detecting GAPDH nucleic acid and the primer set for detecting target nucleic acid in the above-mentioned kit for detecting target nucleic acid of the present disclosure, the 5' end of the reverse inner primer BIP-G for GAPDH nucleic acid and the 5' end of the reverse inner primer BIP-T for target nucleic acid are labeled with biotin, and the 5' end of the forward inner primer FIP-G for GAPDH nucleic acid is labeled with foxgloveine, and the 5' end of the forward inner primer FIP-T for target nucleic acid is labeled with fluorescein. Furthermore, in this specific embodiment, the target nucleic acid detection kit disclosed herein, in addition to the primer set for detecting GAPDH nucleic acid and the primer set for detecting target nucleic acid, may further include the lateral flow immunoassay test strip 200' or 200'', and in the lateral flow immunoassay test strip, the binding region 203 has a first binding particle 203BP, and the first binding molecule 203B of the first binding particle is avidin, the second binding molecule 205B of the GAPDH detection region 205 is an antibody that can recognize digitalis, the fourth binding molecule 206B of the target nucleic acid detection region 206 is an antibody that can recognize fluorescein, and the third binding molecule 207B in the test strip control region 207 is biotin or an antibody that can recognize avidin.
又,於一實施例中,本揭露之偵測標的核酸之套組,除了上述偵測GAPDH核酸之引子組與上述偵測標的核酸之引子組,還可更包括一聚合酶及/或核苷酸基質,但不限於此。上述聚合酶可具有反轉錄酶之功能,但也不限於此。在一特定實施例中,上述聚合酶為一 BstDNA聚合酶,例如,其序列包括序列識別號:10之胺基酸序列之一 BstDNA聚合酶,但不限於此。 Furthermore, in one embodiment, the target nucleic acid detection kit disclosed herein may further include a polymerase and/or a nucleotide substrate in addition to the primer set for detecting GAPDH nucleic acid and the primer set for detecting target nucleic acid, but is not limited thereto. The polymerase may have the function of a reverse transcriptase, but is not limited thereto. In a specific embodiment, the polymerase is a Bst DNA polymerase, for example, a Bst DNA polymerase whose sequence includes the amino acid sequence of sequence identification number: 10, but is not limited thereto.
又,於一實施例中,本揭露之偵測標的核酸之套組,除了上述偵測GAPDH核酸之引子組與上述偵測標的核酸之引子組,也可更包括一反轉錄酶及/或核苷酸基質,但不限於此。上述反轉錄酶可具有一核糖核酸酶(RNase)之功能,但也不限於此。在一特定實施例中,上述反轉錄酶為可具有核糖核酸酶H (RNase H)之功能。Furthermore, in one embodiment, the target nucleic acid detection kit disclosed herein may further include a reverse transcriptase and/or a nucleotide substrate in addition to the primer set for detecting GAPDH nucleic acid and the primer set for detecting target nucleic acid, but is not limited thereto. The reverse transcriptase may have the function of a ribonuclease (RNase), but is not limited thereto. In a specific embodiment, the reverse transcriptase may have the function of ribonuclease H (RNase H).
依據上述內容,本揭露還可提供一種新型冠狀病毒偵測套組,其可包括一偵測新型冠狀病毒之核酸的引子組,但不限於此。According to the above content, the present disclosure can also provide a novel coronavirus detection kit, which may include a primer set for detecting nucleic acid of the novel coronavirus, but is not limited thereto.
而上述本揭露之新型冠狀病毒偵測套組中之偵測新型冠狀病毒之核酸的引子組,可為在上方關於本揭露之標的核酸偵測套組中的偵測標的核酸之引子組的偵測標的可為嚴重急性呼吸道症候群冠狀病毒2型(新型冠狀病毒)之RdRp基因之核酸的實施例的所有段落中所述之任何偵測標的核酸之引子組,但不限於此。The primer set for detecting nucleic acid of the novel coronavirus in the novel coronavirus detection kit disclosed above may be any primer set for detecting target nucleic acid described in all the paragraphs above regarding the embodiments of the primer set for detecting target nucleic acid in the target nucleic acid detection kit disclosed above, wherein the detection target may be the nucleic acid of the RdRp gene of severe acute respiratory syndrome coronavirus type 2 (novel coronavirus), but is not limited thereto.
上述本揭露之新型冠狀病毒偵測套組中之偵測新型冠狀病毒之核酸的引子組可用於一恆溫環型核酸擴增法,以確認一待測樣本中是否存在新型冠狀病毒。The primer set for detecting novel coronavirus nucleic acid in the novel coronavirus detection kit disclosed above can be used in a constant temperature cycle nucleic acid amplification method to confirm whether a novel coronavirus is present in a sample to be tested.
上述恆溫環型核酸擴增法,可包括,標準恆溫環型核酸擴增法或反轉錄恆溫環型核酸擴增法等,但不限於此。The above-mentioned constant temperature circular nucleic acid amplification method may include, but is not limited to, a standard constant temperature circular nucleic acid amplification method or a reverse transcription constant temperature circular nucleic acid amplification method.
而上述待測樣本,可為一未經任何純化處理,例如核酸純化處理之樣本。亦即,藉由上述本揭露之新型冠狀病毒偵測套組中之偵測新型冠狀病毒之核酸的引子組,可對一未經任何純化處理之生物樣本,進行恆溫環型核酸擴增法,而獲得準確之新型冠狀病毒偵測結果,而可達成減少或免除處理待測樣本的效果。The sample to be tested may be a sample that has not been subjected to any purification treatment, such as nucleic acid purification treatment. That is, by using the primer set for detecting nucleic acid of the novel coronavirus in the novel coronavirus detection kit disclosed above, a constant temperature cycle nucleic acid amplification method can be performed on a biological sample that has not been subjected to any purification treatment to obtain accurate novel coronavirus detection results, thereby achieving the effect of reducing or eliminating the need to process the sample to be tested.
上述待測樣本之來源可包括,但不限於,唾液檢體、痰液檢體、鼻腔拭子檢體、咽喉拭子檢體、鼻咽檢體、尿液檢體、糞便檢體、直腸拭子檢體、腦脊髓液檢體、體液檢體等。The sources of the above-mentioned samples to be tested may include, but are not limited to, saliva samples, sputum samples, nasal swab samples, throat swab samples, nasopharyngeal samples, urine samples, stool samples, rectal swab samples, cerebrospinal fluid samples, body fluid samples, etc.
在一實施例中,上述待測樣本之來源可為一非侵入式採樣所獲得之檢體,如唾液檢體、痰液檢體、尿液檢體、糞便檢體等,但不限於此。於此實施例中,本揭露之新型冠狀病毒偵測套組可搭配一恆溫反應機器、一恆溫加熱機器或一簡易分析試片,如側流免疫分析試片,而達成居家檢驗之目的。In one embodiment, the source of the sample to be tested can be a sample obtained by non-invasive sampling, such as a saliva sample, a sputum sample, a urine sample, a feces sample, etc., but not limited thereto. In this embodiment, the novel coronavirus detection kit disclosed herein can be used in conjunction with a constant temperature reaction machine, a constant temperature heating machine, or a simple analysis test strip, such as a lateral flow immunoassay test strip, to achieve the purpose of home testing.
又,上述本揭露之新型冠狀病毒偵測套組中之偵測新型冠狀病毒之核酸的引子組,可以單股RNA或第一股cDNA為起始模板,進行上述恆溫環型核酸擴增法,但不限於此。In addition, the primer set for detecting the nucleic acid of the novel coronavirus in the novel coronavirus detection kit disclosed above can use single-stranded RNA or first-stranded cDNA as a starting template to perform the above-mentioned constant temperature circular nucleic acid amplification method, but is not limited to this.
此外,在一實施例中,於上述本揭露之新型冠狀病毒偵測套組中之偵測新型冠狀病毒之核酸的引子組中,上述針對新型冠狀病毒之核酸之逆向內引子的5’端可標示有一第一標誌,而上述針對新型冠狀病毒之核酸之順向內引子的5’端可標示有一第二標誌,且其中上述第一標誌與上述第二標誌不同。上述第一標誌可包括生物素、卵白素、鏈親和素、長葉毛地黃配質、螢光素等,但不限於此。上述第二標誌也可包括,但不限於,生物素、卵白素、鏈親和素、長葉毛地黃配質、螢光素等。In addition, in one embodiment, in the primer set for detecting the nucleic acid of the novel coronavirus in the novel coronavirus detection kit disclosed above, the 5' end of the reverse inner primer for the nucleic acid of the novel coronavirus may be marked with a first marker, and the 5' end of the forward inner primer for the nucleic acid of the novel coronavirus may be marked with a second marker, and wherein the first marker is different from the second marker. The first marker may include, but is not limited to, biotin, avidin, streptavidin, luteolin, luciferin, etc. The second marker may also include, but is not limited to, biotin, avidin, streptavidin, luteolin, luciferin, etc.
又,於此實施例中,本揭露之新型冠狀病毒偵測套組,除了上述偵測新型冠狀病毒之核酸的引子組,還可更包括一側流免疫分析試片,但不限於此。上述側流免疫分析試片之材質可包括,但不限於,硝化纖維膜、尼龍膜、聚偏二氟乙烯膜、聚醚碸膜等。Furthermore, in this embodiment, the novel coronavirus detection kit disclosed herein may include, in addition to the primer set for detecting the nucleic acid of the novel coronavirus, a lateral flow immunoassay test strip, but is not limited thereto. The material of the lateral flow immunoassay test strip may include, but is not limited to, nitrocellulose membrane, nylon membrane, polyvinylidene fluoride membrane, polyether sulfide membrane, etc.
上述側流免疫分析試片依據分析物流動方向依序可包括一分析物添加區、一結合區、一新型冠狀病毒偵測區與一試片控制區。上述結合區具有一第一結合顆粒,其具有一第一結合分子與連接上述第一結合分子的一顆粒,其中上述第一結合分子具有結合上述第一標誌之能力。上述顆粒之材質可包括,但不限於,金、碳、乳膠、磁性材料等。或者,上述結合區除了上述第一結合顆粒,還可更包括塗覆有一特定物質的一控制顆粒,而控制顆粒之材質的例子可參考上方所述顆粒之材質,但於側流免疫分析試片上,控制顆粒與顆粒兩者之材質可為相同或不同。又,上述特定物質並無特殊限制,只要有一分子可與其結合即可,而上述特定物質的例子,可包括,但不限於,血清(如小鼠血清,但不限於此)。上述新型冠狀病毒偵測區固定有一第二結合分子,其具有結合上述第二標誌之能力。又,上述試片控制區固定有一第三結合分子,其具有結合上述第一結合顆粒中之上述第一結合分子的能力,其中上述第三結合分子與上述第一標誌可為相同或不同。或者,在上述結合區除了第一結合顆粒,還可更包括一控制顆粒的情況下,上述試片控制區所固定之第三結合分子,其可為具有結合上述控制顆粒之上述特定物質的能力。例如塗覆控制顆粒之特定物質為小鼠血清時,第三結合分子可為抗小鼠血清抗體。在一特定實施例中,於上述本揭露之新型冠狀病毒偵測套組中之偵測新型冠狀病毒之核酸的引子組中,上述針對新型冠狀病毒之核酸之逆向內引子的5’端標示有生物素,而上述針對新型冠狀病毒之核酸之順向內引子的5’端標示有螢光素。又,於此特定實施例中,本揭露之新型冠狀病毒偵測套組,除了上述偵測新型冠狀病毒之核酸的引子組,還更包括上述側流免疫分析試片,且於上述側流免疫分析試片中,上述結合區中之第一結合分子為卵白素,上述新型冠狀病毒偵測區之第二結合分子為可辨識螢光素之抗體,而上述試片控制區中之第三結合分子為生物素或可辨識卵白素之抗體。The lateral flow immunoassay test strip may include an analyte addition zone, a binding zone, a novel coronavirus detection zone and a test strip control zone in sequence according to the flow direction of the analyte. The binding zone has a first binding particle, which has a first binding molecule and a particle connected to the first binding molecule, wherein the first binding molecule has the ability to bind to the first marker. The material of the particles may include, but is not limited to, gold, carbon, latex, magnetic materials, etc. Alternatively, in addition to the first binding particles, the binding zone may further include a control particle coated with a specific substance, and examples of the material of the control particles can refer to the materials of the particles described above, but on the lateral flow immunoassay test strip, the materials of the control particles and the particles may be the same or different. Furthermore, there is no special limitation on the above-mentioned specific substance, as long as there is a molecule that can bind to it, and examples of the above-mentioned specific substance may include, but are not limited to, serum (such as mouse serum, but not limited to this). The above-mentioned novel coronavirus detection area is fixed with a second binding molecule, which has the ability to bind to the above-mentioned second marker. Furthermore, the above-mentioned test piece control area is fixed with a third binding molecule, which has the ability to bind to the above-mentioned first binding molecule in the above-mentioned first binding particle, wherein the above-mentioned third binding molecule and the above-mentioned first marker may be the same or different. Alternatively, in the case where the above-mentioned binding area may further include a control particle in addition to the first binding particle, the third binding molecule fixed by the above-mentioned test piece control area may be the ability to bind to the above-mentioned specific substance of the above-mentioned control particle. For example, when the specific substance coating the control particle is mouse serum, the third binding molecule may be an anti-mouse serum antibody. In a specific embodiment, in the primer set for detecting the nucleic acid of the novel coronavirus in the novel coronavirus detection kit disclosed herein, the 5' end of the reverse inner primer for the nucleic acid of the novel coronavirus is labeled with biotin, and the 5' end of the forward inner primer for the nucleic acid of the novel coronavirus is labeled with fluorescein. Furthermore, in this specific embodiment, the novel coronavirus detection kit disclosed herein, in addition to the primer set for detecting the nucleic acid of the novel coronavirus, further includes the lateral flow immunoassay test strip, and in the lateral flow immunoassay test strip, the first binding molecule in the binding region is avidin, the second binding molecule in the novel coronavirus detection region is an antibody that can recognize fluorescein, and the third binding molecule in the control region of the test strip is biotin or an antibody that can recognize avidin.
又,於一實施例中,本揭露之新型冠狀病毒偵測套組,除了上述偵測新型冠狀病毒之核酸的引子組,還可更包括一聚合酶及/或核苷酸基質,但不限於此。上述聚合酶可具有反轉錄酶之功能,但也不限於此。在一特定實施例中,上述聚合酶為一 BstDNA聚合酶,例如,其序列包括序列識別號:10之胺基酸序列之一 BstDNA聚合酶,但不限於此。 Furthermore, in one embodiment, the novel coronavirus detection kit disclosed herein may further include a polymerase and/or a nucleotide substrate in addition to the primer set for detecting the nucleic acid of the novel coronavirus, but is not limited thereto. The polymerase may have the function of a reverse transcriptase, but is not limited thereto. In a specific embodiment, the polymerase is a Bst DNA polymerase, for example, a Bst DNA polymerase whose sequence includes an amino acid sequence of sequence identification number: 10, but is not limited thereto.
此外,於一實施例中,本揭露之新型冠狀病毒偵測套組,除了上述偵測新型冠狀病毒之核酸的引子組,也可更包括一反轉錄酶及/或核苷酸基質,但不限於此。上述反轉錄酶可具有一核糖核酸酶(RNase)之功能,但也不限於此。在一特定實施例中,上述反轉錄酶為可具有核糖核酸酶H(RNase H)之功能。In addition, in one embodiment, the novel coronavirus detection kit disclosed herein may further include a reverse transcriptase and/or a nucleotide substrate in addition to the primer set for detecting the nucleic acid of the novel coronavirus, but is not limited thereto. The reverse transcriptase may have the function of a ribonuclease (RNase), but is not limited thereto. In a specific embodiment, the reverse transcriptase may have the function of ribonuclease H (RNase H).
此外,根據上述,本揭露也可提供一種偵測GAPDH核酸之方法。本揭露之偵測GAPDH核酸之方法,可包括,但不限於以下步驟。In addition, according to the above, the present disclosure can also provide a method for detecting GAPDH nucleic acid. The method for detecting GAPDH nucleic acid disclosed herein may include, but is not limited to, the following steps.
首先,提供一待測樣本。於此所述之待測樣本的來源的相關說明,可與上方關於本揭露之GAPDH核酸偵測套組之段落中所述之待測樣本的來源的相關說明相同,且因此不於此贅述。在一實施例中,上述待測樣本的來源可為一唾液檢體。First, a sample to be tested is provided. The description of the source of the sample to be tested described herein may be the same as the description of the source of the sample to be tested described in the above paragraph regarding the GAPDH nucleic acid detection kit disclosed herein, and therefore will not be repeated here. In one embodiment, the source of the sample to be tested may be a saliva sample.
接著,將上述待測樣本以上方所述任何之本揭露之GAPDH核酸偵測套組中的偵測GAPDH核酸之引子組進行一恆溫環型核酸擴增法。若上述待測樣本含有GAPDH核酸,則自上述反應中獲得一GAPDH的核酸擴增產物。Next, the above-mentioned sample to be tested is subjected to a constant temperature cycle nucleic acid amplification method using any of the above-mentioned primer sets for detecting GAPDH nucleic acid in the disclosed GAPDH nucleic acid detection kit. If the above-mentioned sample to be tested contains GAPDH nucleic acid, a GAPDH nucleic acid amplification product is obtained from the above reaction.
又,在一實施例中,於上述本揭露之偵測GAPDH核酸之方法中,上述GAPDH核酸的擴增產物之存在的確認方式,並無特別限制,只要可確認上述GAPDH核酸的擴增產物是否存在即可。例如,上述GAPDH核酸的擴增產物之存在的確認方式,可包括,一膠體電泳分析、一側流免疫分析等,但不限於此。Furthermore, in one embodiment, in the method for detecting GAPDH nucleic acid disclosed above, the method for confirming the presence of the amplification product of the GAPDH nucleic acid is not particularly limited, as long as the presence of the amplification product of the GAPDH nucleic acid can be confirmed. For example, the method for confirming the presence of the amplification product of the GAPDH nucleic acid may include, but is not limited to, a gel electrophoresis analysis, a lateral flow immunoassay, etc.
於上述本揭露之偵測GAPDH核酸之方法中,上述恆溫環型核酸擴增法係可以上述待測樣本中之單股RNA或第一股cDNA為起始模板,但不限於此。In the method for detecting GAPDH nucleic acid disclosed above, the constant temperature circular nucleic acid amplification method can use the single strand RNA or the first strand cDNA in the sample to be tested as a starting template, but is not limited thereto.
在一實施例中,於上述本揭露之偵測GAPDH核酸之方法中,上述待測樣本,可為一未經任何純化處理,例如核酸純化處理之樣本。亦即,上述本揭露之偵測GAPDH核酸之方法,可直接對一未經任何純化處理的生物樣本進行上述恆溫環型核酸擴增法,而獲得準確之GAPDH核酸偵測結果,而可達成減少或免除處理待測樣本的效果。在一特定實施例中,上述待測樣本可為一原始唾液檢體。In one embodiment, in the method for detecting GAPDH nucleic acid disclosed above, the sample to be tested may be a sample that has not been subjected to any purification treatment, such as nucleic acid purification treatment. That is, the method for detecting GAPDH nucleic acid disclosed above may directly perform the above constant temperature cycle nucleic acid amplification method on a biological sample that has not been subjected to any purification treatment, and obtain accurate GAPDH nucleic acid detection results, thereby achieving the effect of reducing or eliminating the need to process the sample to be tested. In a specific embodiment, the sample to be tested may be an original saliva sample.
在一實施例中,上述本揭露之偵測GAPDH核酸之方法,可更包括於提供待測樣本之前,將一生物樣本進行一前處理以獲得上述待測樣本。上述前處理可包括,但不限於以下步驟之一: (i) 將該生物樣本進行一熱處理步驟; (ii) 將上述生物樣本進行一核酸純化步驟; (iii) 將上述生物樣本進行一反轉錄步驟; (iv) 將上述生物樣本進行一核酸純化步驟之後,進行一反轉錄步驟; (v) 將上述生物樣本進行一反轉錄步驟之後,進行一RNA去除步驟;與 (vi) 將上述生物樣本進行一核酸純化步驟之後,進行一反轉錄步驟,且之後進行一RNA去除步驟。 In one embodiment, the method for detecting GAPDH nucleic acid disclosed herein may further include pre-treating a biological sample to obtain the sample before providing the sample. The above-mentioned pre-treatment may include, but is not limited to, one of the following steps: (i) subjecting the biological sample to a heat treatment step; (ii) subjecting the above-mentioned biological sample to a nucleic acid purification step; (iii) subjecting the above-mentioned biological sample to a reverse transcription step; (iv) subjecting the above-mentioned biological sample to a nucleic acid purification step and then to a reverse transcription step; (v) subjecting the above-mentioned biological sample to a reverse transcription step and then to an RNA removal step; and (vi) subjecting the above-mentioned biological sample to a nucleic acid purification step and then to a reverse transcription step and then to an RNA removal step.
上述熱處理步驟之溫度可為約45-100℃,例如約50-95℃、約55-90℃、約60℃、約70℃、約80℃、約90℃、約95℃等,但不限於此。The temperature of the heat treatment step may be about 45-100°C, such as about 50-95°C, about 55-90°C, about 60°C, about 70°C, about 80°C, about 90°C, about 95°C, etc., but is not limited thereto.
而上述生物樣本可包括,唾液檢體、痰液檢體、鼻腔拭子檢體、咽喉拭子檢體、鼻咽檢體、尿液檢體、糞便檢體、直腸拭子檢體、腦脊髓液檢體、體液檢體等,但不限於此。在一實施例中,上述生物樣本可為一唾液檢體。The biological sample may include, but is not limited to, saliva sample, sputum sample, nasal swab sample, throat swab sample, nasopharyngeal sample, urine sample, feces sample, rectal swab sample, cerebrospinal fluid sample, body fluid sample, etc. In one embodiment, the biological sample may be a saliva sample.
此外,於上述本揭露之偵測GAPDH核酸之方法中,上述恆溫環型核酸擴增法可包括,標準恆溫環型核酸擴增法、反轉錄恆溫環型核酸擴增法等,但不限於此。In addition, in the above-mentioned method for detecting GAPDH nucleic acid disclosed herein, the above-mentioned constant temperature circular nucleic acid amplification method may include a standard constant temperature circular nucleic acid amplification method, a reverse transcription constant temperature circular nucleic acid amplification method, etc., but is not limited thereto.
在一實施例中,於上述本揭露之偵測GAPDH核酸之方法中的恆溫環型核酸擴增法,可為反轉錄恆溫環型核酸擴增法。於一特定實施例中,於上述反轉錄恆溫環型擴增法中,反轉錄程序與恆溫環型擴增程序係以一個步驟來進行,又於上述反轉錄恆溫環型擴增法中,可使用一具有反轉錄酶之功能的聚合酶,例如,一 BstDNA聚合酶,但不限於此。上述 BstDNA聚合酶的例子,可包括,但不限於,其序列可包括序列識別號:10之胺基酸序列的 BstDNA聚合酶。在另一特定實施例中,於上述反轉錄恆溫環型擴增法中,一恆溫環型擴增程序係於一反轉錄程序後進行,又於此特定實施例中,反轉錄程序可藉由一具有一核糖核酸酶(RNase)之功能的反轉錄酶來進行,但不限於此,而上述核糖核酸酶(RNase)可包括,但不限於糖核酸酶H(RNase H)等。 In one embodiment, the constant temperature circular nucleic acid amplification method in the method for detecting GAPDH nucleic acid disclosed above can be a reverse transcription constant temperature circular nucleic acid amplification method. In a specific embodiment, in the reverse transcription constant temperature circular amplification method, the reverse transcription process and the constant temperature circular amplification process are performed in one step, and in the reverse transcription constant temperature circular amplification method, a polymerase having the function of a reverse transcriptase can be used, for example, a Bst DNA polymerase, but not limited thereto. Examples of the above Bst DNA polymerase can include, but are not limited to, a Bst DNA polymerase whose sequence can include the amino acid sequence of sequence identification number: 10. In another specific embodiment, in the above-mentioned reverse transcription constant temperature cyclic amplification method, a constant temperature cyclic amplification process is performed after a reverse transcription process. In this specific embodiment, the reverse transcription process can be performed by a reverse transcriptase having a ribonuclease (RNase) function, but is not limited to this. The above-mentioned ribonuclease (RNase) can include, but is not limited to, ribonuclease H (RNase H) and the like.
又,根據上述,本揭露也可提供一種偵測標的核酸之方法。Furthermore, according to the above, the present disclosure may also provide a method for detecting a target nucleic acid.
本揭露之偵測標的核酸之方法,可包括,但不限於以下步驟。The method for detecting a target nucleic acid disclosed herein may include, but is not limited to, the following steps.
首先,提供一待測樣本。於此所述之待測樣本的來源的相關說明,可與上方關於本揭露之偵測標的之套組之段落中所述之待測樣本的來源的相關說明,且因此不於此贅述。在一實施例中,上述待測樣本的來源可為一唾液檢體。First, a sample to be tested is provided. The relevant description of the source of the sample to be tested described herein can be related to the relevant description of the source of the sample to be tested described in the above paragraph about the kit of detection targets disclosed in the present invention, and therefore will not be repeated here. In one embodiment, the source of the sample to be tested can be a saliva sample.
接著,將上述待測樣本分別以上方所述任何之本揭露之GAPDH核酸偵測套組中的偵測GAPDH核酸之引子組與偵測標的核酸之引子組進行上述第一恆溫環型核酸擴增法與上述第二恆溫環型核酸擴增法。若上述待測樣本含有上述標的核酸,則自上述第一恆溫環型核酸擴增法獲得為一內部控制組之一GAPDH核酸的擴增產物,且自上述第二恆溫環型核酸擴增法獲得一標的核酸的擴增產物。Next, the above-mentioned sample to be tested is subjected to the above-mentioned first constant temperature circular nucleic acid amplification method and the above-mentioned second constant temperature circular nucleic acid amplification method respectively using the primer set for detecting GAPDH nucleic acid and the primer set for detecting target nucleic acid in any of the above-mentioned GAPDH nucleic acid detection kits disclosed herein. If the above-mentioned sample to be tested contains the above-mentioned target nucleic acid, an amplification product of a GAPDH nucleic acid as an internal control group is obtained from the above-mentioned first constant temperature circular nucleic acid amplification method, and an amplification product of a target nucleic acid is obtained from the above-mentioned second constant temperature circular nucleic acid amplification method.
又,在一實施例中,於上述本揭露之偵測標的核酸之方法中,上述GAPDH核酸的擴增產物或上述標的核酸的擴增產物之存在的確認方式,並無特別限制,只要可確認上述GAPDH核酸的擴增產物或上述標的核酸的擴增產物是否存在即可。上述GAPDH核酸的擴增產物或上述標的核酸的擴增產物之存在的確認方式,可包括,一膠體電泳分析、一側流免疫分析等,但不限於此。In one embodiment, in the method for detecting the target nucleic acid disclosed above, the method for confirming the presence of the amplification product of the GAPDH nucleic acid or the amplification product of the target nucleic acid is not particularly limited, as long as the presence of the amplification product of the GAPDH nucleic acid or the amplification product of the target nucleic acid can be confirmed. The method for confirming the presence of the amplification product of the GAPDH nucleic acid or the amplification product of the target nucleic acid may include, but is not limited to, a gel electrophoresis analysis, a lateral flow immunoassay, etc.
於上述本揭露之偵測標的核酸之方法中,上述第一恆溫環型核酸擴增法與第二恆溫環型核酸擴增法係可以上述待測樣本中之單股RNA或第一股cDNA為起始模板,但不限於此。In the method for detecting target nucleic acid disclosed above, the first constant temperature circular nucleic acid amplification method and the second constant temperature circular nucleic acid amplification method can use the single-stranded RNA or the first-stranded cDNA in the sample to be tested as the starting template, but is not limited thereto.
在一實施例中,於上述本揭露之偵測標的核酸之方法中,上述待測樣本,可為一未經任何純化處理,例如核酸純化處理之樣本。亦即,上述本揭露之偵測標的核酸之方法,可直接對一未經任何純化處理的生物樣本進行上述第一恆溫環型核酸擴增法與第二恆溫環型核酸擴增法,而獲得準確之標的核酸偵測結果,而可達成減少或免除處理待測樣本的效果。在一特定實施例中,上述待測樣本可為一原始唾液檢體。In one embodiment, in the method for detecting target nucleic acid disclosed above, the sample to be tested may be a sample that has not been subjected to any purification treatment, such as nucleic acid purification treatment. That is, the method for detecting target nucleic acid disclosed above may directly perform the first constant temperature cycle nucleic acid amplification method and the second constant temperature cycle nucleic acid amplification method on a biological sample that has not been subjected to any purification treatment, and obtain accurate target nucleic acid detection results, thereby achieving the effect of reducing or eliminating the need to process the sample to be tested. In a specific embodiment, the sample to be tested may be an original saliva sample.
在一實施例中,上述本揭露之偵測標的核酸之方法,可更包括於提供上述待測樣本之前,將一生物樣本進行一前處理以獲得上述待測樣本。上述前處理可包括,但不限於以下步驟之一: (i) 將該生物樣本進行一熱處理步驟; (ii) 將上述生物樣本進行一核酸純化步驟; (iii) 將上述生物樣本進行一反轉錄步驟; (iv) 將上述生物樣本進行一核酸純化步驟之後,進行一反轉錄步驟; (v) 將上述生物樣本進行一反轉錄步驟之後,進行一RNA去除步驟;與 (vi) 將上述生物樣本進行一核酸純化步驟之後,進行一反轉錄步驟,且之後進行一RNA去除步驟。 In one embodiment, the method for detecting a target nucleic acid disclosed herein may further include pre-treating a biological sample to obtain the sample before providing the sample. The above-mentioned pre-treatment may include, but is not limited to, one of the following steps: (i) subjecting the biological sample to a heat treatment step; (ii) subjecting the above-mentioned biological sample to a nucleic acid purification step; (iii) subjecting the above-mentioned biological sample to a reverse transcription step; (iv) subjecting the above-mentioned biological sample to a nucleic acid purification step and then to a reverse transcription step; (v) subjecting the above-mentioned biological sample to a reverse transcription step and then to an RNA removal step; and (vi) subjecting the above-mentioned biological sample to a nucleic acid purification step and then to a reverse transcription step and then to an RNA removal step.
上述熱處理步驟之溫度可為約45-100℃,例如約50-95℃、約55-90℃、約60℃、約70℃、約80℃、約90℃、約95℃等,但不限於此。The temperature of the heat treatment step may be about 45-100°C, such as about 50-95°C, about 55-90°C, about 60°C, about 70°C, about 80°C, about 90°C, about 95°C, etc., but is not limited thereto.
而上述生物樣本可包括,唾液檢體、痰液檢體、鼻腔拭子檢體、咽喉拭子檢體、鼻咽檢體、尿液檢體、糞便檢體、直腸拭子檢體、腦脊髓液檢體、體液檢體等,但不限於此。在一實施例中,上述生物樣本可為一唾液檢體。The biological sample may include, but is not limited to, saliva sample, sputum sample, nasal swab sample, throat swab sample, nasopharyngeal sample, urine sample, feces sample, rectal swab sample, cerebrospinal fluid sample, body fluid sample, etc. In one embodiment, the biological sample may be a saliva sample.
此外,於上述本揭露之偵測標的核酸之方法中,上述第一恆溫環型核酸擴增法或上述第二恆溫環型核酸擴增法可包括,標準恆溫環型核酸擴增法、反轉錄恆溫環型核酸擴增法等,但不限於此。In addition, in the method for detecting target nucleic acid disclosed above, the first constant temperature circular nucleic acid amplification method or the second constant temperature circular nucleic acid amplification method may include a standard constant temperature circular nucleic acid amplification method, a reverse transcription constant temperature circular nucleic acid amplification method, etc., but is not limited thereto.
在一實施例中,於上述本揭露之偵測標的核酸之方法之第一恆溫環型核酸擴增法或上述第二恆溫環型核酸擴增法可為反轉錄恆溫環型擴增法。於一特定實施例中,於上述反轉錄恆溫環型擴增法中,反轉錄程序與恆溫環型擴增程序係以一個步驟來進行,又於上述反轉錄恆溫環型擴增法中,可使用一具有反轉錄酶之功能的聚合酶,例如,一 BstDNA聚合酶,但不限於此。上述 BstDNA聚合酶的例子,可包括,但不限於,其序列可包括序列識別號:10之胺基酸序列的 BstDNA聚合酶。在另一特定實施例中,於上述反轉錄恆溫環型擴增法中,一恆溫環型擴增程序係於一反轉錄程序後進行,又於此特定實施例中,反轉錄程序可藉由一具有一核糖核酸酶(RNase)之功能的反轉錄酶來進行,但不限於此,而上述核糖核酸酶(RNase)可包括,但不限於糖核酸酶(RNase) H等。 In one embodiment, the first constant temperature circular nucleic acid amplification method or the second constant temperature circular nucleic acid amplification method in the method for detecting the target nucleic acid disclosed above can be a reverse transcription constant temperature circular amplification method. In a specific embodiment, in the reverse transcription constant temperature circular amplification method, the reverse transcription process and the constant temperature circular amplification process are performed in one step, and in the reverse transcription constant temperature circular amplification method, a polymerase having the function of a reverse transcriptase can be used, for example, a Bst DNA polymerase, but not limited thereto. Examples of the above Bst DNA polymerase can include, but are not limited to, a Bst DNA polymerase whose sequence can include the amino acid sequence of sequence identification number: 10. In another specific embodiment, in the above-mentioned reverse transcription constant temperature cyclic amplification method, a constant temperature cyclic amplification process is performed after a reverse transcription process. In this specific embodiment, the reverse transcription process can be performed by a reverse transcriptase having the function of a ribonuclease (RNase), but is not limited to this. The above-mentioned ribonuclease (RNase) can include, but is not limited to, ribonuclease (RNase) H, etc.
在一實施例中,本揭露之偵測標的核酸之方法的偵測標的可為一RNA病毒之核酸。上述RNA病毒的例子,可包括冠狀病毒、流行感冒病毒、人類免疫缺乏病毒、伊波拉病毒、C型肝炎病毒,但不限於此。In one embodiment, the target of the method for detecting target nucleic acid disclosed herein may be a nucleic acid of an RNA virus. Examples of the above RNA viruses may include coronavirus, influenza virus, human immunodeficiency virus, Ebola virus, hepatitis C virus, but are not limited thereto.
而上述冠狀病毒可包括,但不限於,嚴重急性呼吸道症候群冠狀病毒、嚴重急性呼吸道症候群冠狀病毒2型(新型冠狀病毒)、中東呼吸症候群冠狀病毒等。The above-mentioned coronaviruses may include, but are not limited to, severe acute respiratory syndrome coronavirus, severe acute respiratory syndrome coronavirus type 2 (novel coronavirus), Middle East respiratory syndrome coronavirus, etc.
此外,上述嚴重急性呼吸道症候群冠狀病毒2型(新型冠狀病毒)之核酸可包括,但不限於,ORF1ab範圍內之核酸(如,RdRp基因之核酸,但不限於此)、棘蛋白(spike protein, S)基因之核酸、套膜(envelope, E)基因之核酸、膜蛋白(membrane protein, M)基因之核酸、核蛋白(nucleoprotein, N)基因之核酸等。In addition, the nucleic acid of the above-mentioned severe acute respiratory syndrome coronavirus type 2 (novel coronavirus) may include, but is not limited to, nucleic acid within the range of ORF1ab (such as nucleic acid of RdRp gene, but not limited to this), nucleic acid of spike protein (S) gene, nucleic acid of envelope (E) gene, nucleic acid of membrane protein (M) gene, nucleic acid of nucleoprotein (N) gene, etc.
在一實施例中,本揭露之偵測標的核酸之方法的偵測標的可為,嚴重急性呼吸道症候群冠狀病毒2型(新型冠狀病毒)之RdRp基因的核酸。In one embodiment, the detection target of the method for detecting target nucleic acid disclosed herein may be the nucleic acid of the RdRp gene of severe acute respiratory syndrome coronavirus type 2 (novel coronavirus).
於本揭露之偵測標的核酸之方法的偵測標的可為嚴重急性呼吸道症候群冠狀病毒2型(新型冠狀病毒)之RdRp基因的核酸的實施例中,所採用之本揭露之標的核酸偵測套組中之偵測標的核酸之引子組,可為前方本揭露之標的核酸偵測套組中,偵測標的核酸之引子組的偵測標的為嚴重急性呼吸道症候群冠狀病毒2型(新型冠狀病毒)之RdRp基因之核酸時,相關實施例之段落中所提及之任何偵測標的核酸的引子組,但不限於此。In the embodiment in which the detection target of the method for detecting target nucleic acid disclosed herein may be the nucleic acid of the RdRp gene of severe acute respiratory syndrome coronavirus type 2 (novel coronavirus), the primer set for detecting target nucleic acid in the target nucleic acid detection kit disclosed herein may be any primer set for detecting target nucleic acid mentioned in the paragraph of the relevant embodiment when the detection target of the primer set for detecting target nucleic acid in the target nucleic acid detection kit disclosed herein is the nucleic acid of the RdRp gene of severe acute respiratory syndrome coronavirus type 2 (novel coronavirus), but is not limited thereto.
另外,根據上述,本揭露也可提供一種偵測新型冠狀病毒的方法。In addition, based on the above, the present disclosure can also provide a method for detecting the novel coronavirus.
本揭露之偵測新型冠狀病毒的方法,可包括,但不限於以下步驟。The method for detecting the novel coronavirus disclosed herein may include, but is not limited to, the following steps.
首先,提供一待測樣本。於此所述之待測樣本的來源的相關說明,可與上方關於本揭露之偵測標的之套組之段落中所述之待測樣本的來源的相關說明,且因此不於此贅述。在一實施例中,上述待測樣本的來源可為一唾液檢體。First, a sample to be tested is provided. The relevant description of the source of the sample to be tested described herein can be related to the relevant description of the source of the sample to be tested described in the above paragraph about the kit of detection targets disclosed in the present invention, and therefore will not be repeated here. In one embodiment, the source of the sample to be tested can be a saliva sample.
接著,將上述待測樣本以上方所述任何之本揭露之新型冠狀病毒偵測套組中的偵測新型冠狀病毒之核酸的引子組進行一恆溫環型核酸擴增法。若上述待測樣本含有新型冠狀病毒,自上述恆溫環型核酸擴增法獲得一新型冠狀病毒核酸的擴增產物。Next, the sample to be tested is subjected to a constant temperature circular nucleic acid amplification method using any of the primer sets for detecting the nucleic acid of the novel coronavirus in the novel coronavirus detection kit disclosed herein. If the sample to be tested contains the novel coronavirus, an amplification product of the novel coronavirus nucleic acid is obtained from the constant temperature circular nucleic acid amplification method.
又,在一實施例中,於上述本揭露之偵測新型冠狀病毒的方法中,上述新型冠狀病毒核酸的擴增產物的確認方式,並無特別限制,只要可確認上述新型冠狀病毒核酸的擴增產物是否存在即可。上述新型冠狀病毒核酸的擴增產物之存在的確認方式,可包括,一膠體電泳分析、一側流免疫分析等,但不限於此。In one embodiment, in the method for detecting novel coronavirus disclosed above, the method for confirming the amplification product of the novel coronavirus nucleic acid is not particularly limited, as long as the presence of the amplification product of the novel coronavirus nucleic acid can be confirmed. The method for confirming the presence of the amplification product of the novel coronavirus nucleic acid may include, but is not limited to, a colloid electrophoresis analysis, a lateral flow immunoassay, etc.
於上述本揭露之偵測新型冠狀病毒的方法中,恆溫環型核酸擴增法係可以上述待測樣本中之單股RNA或第一股cDNA為起始模板,但不限於此。In the method for detecting the novel coronavirus disclosed above, the constant temperature circular nucleic acid amplification method can use the single-stranded RNA or the first-stranded cDNA in the above-mentioned sample to be tested as the starting template, but is not limited thereto.
在一實施例中,於上述本揭露之偵測新型冠狀病毒的方法中,上述待測樣本,可為一未經任何純化處理,例如未經核酸純化處理之樣本。亦即,上述本揭露之偵測新型冠狀病毒的方法中,可直接對一未經任何純化處理的生物樣本進行上述恆溫環型核酸擴增法,而獲得準確之新型冠狀病毒偵測結果,而可達成減少或免除處理待測樣本的效果。在一特定實施例中,上述待測樣本可為一原始唾液檢體。In one embodiment, in the method for detecting the novel coronavirus disclosed above, the sample to be tested may be a sample that has not been subjected to any purification treatment, such as a sample that has not been subjected to nucleic acid purification treatment. That is, in the method for detecting the novel coronavirus disclosed above, the constant temperature cycle nucleic acid amplification method may be directly performed on a biological sample that has not been subjected to any purification treatment to obtain an accurate novel coronavirus detection result, thereby achieving the effect of reducing or eliminating the need to process the sample to be tested. In a specific embodiment, the sample to be tested may be an original saliva sample.
在一實施例中,上述本揭露之偵測新型冠狀病毒的方法中,可更包括於提供上述待測樣本之前,將一生物樣本進行一前處理以獲得上述待測樣本。上述前處理可包括,但不限於以下步驟之一: (i) 將該生物樣本進行一熱處理步驟; (ii) 將上述生物樣本進行一核酸純化步驟; (iii) 將上述生物樣本進行一反轉錄步驟; (iv) 將上述生物樣本進行一核酸純化步驟之後,進行一反轉錄步驟; (v) 將上述生物樣本進行一反轉錄步驟之後,進行一RNA去除步驟;與 (vi) 將上述生物樣本進行一核酸純化步驟之後,進行一反轉錄步驟,且之後進行一RNA去除步驟。 In one embodiment, the method for detecting the novel coronavirus disclosed above may further include pre-processing a biological sample to obtain the above-mentioned sample before providing the above-mentioned sample to be tested. The above-mentioned pre-treatment may include, but is not limited to, one of the following steps: (i) subjecting the biological sample to a heat treatment step; (ii) subjecting the above-mentioned biological sample to a nucleic acid purification step; (iii) subjecting the above-mentioned biological sample to a reverse transcription step; (iv) subjecting the above-mentioned biological sample to a nucleic acid purification step and then to a reverse transcription step; (v) subjecting the above-mentioned biological sample to a reverse transcription step and then to an RNA removal step; and (vi) subjecting the above-mentioned biological sample to a nucleic acid purification step and then to a reverse transcription step and then to an RNA removal step.
上述熱處理步驟之溫度可為約45-100℃,例如約50-95℃、約55-90℃、約60℃、約70℃、約80℃、約90℃、約95℃等,但不限於此。The temperature of the heat treatment step may be about 45-100°C, such as about 50-95°C, about 55-90°C, about 60°C, about 70°C, about 80°C, about 90°C, about 95°C, etc., but is not limited thereto.
而上述生物樣本可包括,唾液檢體、痰液檢體、鼻腔拭子檢體、咽喉拭子檢體、鼻咽檢體、尿液檢體、糞便檢體、直腸拭子檢體、腦脊髓液檢體、體液檢體等,但不限於此。在一實施例中,上述生物樣本可為一唾液檢體。The biological sample may include, but is not limited to, saliva sample, sputum sample, nasal swab sample, throat swab sample, nasopharyngeal sample, urine sample, feces sample, rectal swab sample, cerebrospinal fluid sample, body fluid sample, etc. In one embodiment, the biological sample may be a saliva sample.
此外,於上述本揭露之偵測新型冠狀病毒的方法中,上述恆溫環型核酸擴增法可包括,標準恆溫環型核酸擴增法、反轉錄恆溫環型核酸擴增法等,但不限於此。In addition, in the method for detecting the novel coronavirus disclosed above, the above-mentioned constant temperature circular nucleic acid amplification method may include a standard constant temperature circular nucleic acid amplification method, a reverse transcription constant temperature circular nucleic acid amplification method, etc., but is not limited thereto.
在一實施例中,於上述本揭露之偵測標的核酸之方法之第一恆溫環型核酸擴增法或上述第二恆溫環型核酸擴增法可為反轉錄恆溫環型核酸擴增法。於一特定實施例中,於上述反轉錄恆溫環型核酸擴增法中,反轉錄程序與恆溫環型核酸擴增程序係以一個步驟來進行,又於上述反轉錄恆溫環型核酸擴增法中,可使用一具有反轉錄酶之功能的聚合酶,例如,一 BstDNA聚合酶,但不限於此。上述 BstDNA聚合酶的例子,可包括,但不限於,其序列可包括序列識別號:10之胺基酸序列的 BstDNA聚合酶。在另一特定實施例中,於上述反轉錄恆溫環型核酸擴增法中,一恆溫環型核酸擴增程序係於一反轉錄程序後進行,又於此特定實施例中,反轉錄程序可藉由一具有一核糖核酸酶(RNase)之功能的反轉錄酶來進行,但不限於此,而上述核糖核酸酶(RNase)可包括,但不限於糖核酸酶(RNase) H等。 In one embodiment, the first constant temperature circular nucleic acid amplification method or the second constant temperature circular nucleic acid amplification method in the method for detecting the target nucleic acid disclosed above can be a reverse transcription constant temperature circular nucleic acid amplification method. In a specific embodiment, in the reverse transcription constant temperature circular nucleic acid amplification method, the reverse transcription process and the constant temperature circular nucleic acid amplification process are performed in one step, and in the reverse transcription constant temperature circular nucleic acid amplification method, a polymerase having the function of a reverse transcriptase can be used, for example, a Bst DNA polymerase, but not limited thereto. Examples of the above Bst DNA polymerase can include, but are not limited to, a Bst DNA polymerase whose sequence can include the amino acid sequence of sequence identification number: 10. In another specific embodiment, in the above-mentioned reverse transcription constant temperature circular nucleic acid amplification method, a constant temperature circular nucleic acid amplification process is performed after a reverse transcription process. In this specific embodiment, the reverse transcription process can be performed by a reverse transcriptase having a ribonuclease (RNase) function, but is not limited to this. The above-mentioned ribonuclease (RNase) can include, but is not limited to, ribonuclease (RNase) H, etc.
此外,上述新型冠狀病毒之核酸可包括,但不限於,ORF1ab範圍內之核酸(如,RdRp基因之核酸,但不限於此)、棘蛋白(spike protein, S)基因之核酸、套膜(envelope, E)基因之核酸、膜蛋白(membrane protein, M)基因之核酸、核蛋白(nucleoprotein, N)基因之核酸等。In addition, the nucleic acid of the above-mentioned novel coronavirus may include, but is not limited to, nucleic acid within the range of ORF1ab (such as nucleic acid of RdRp gene, but not limited to this), nucleic acid of spike protein (S) gene, nucleic acid of envelope (E) gene, nucleic acid of membrane protein (M) gene, nucleic acid of nucleoprotein (N) gene, etc.
在一實施例中,本揭露之偵測新型冠狀病毒的方法的偵測標的可為新型冠狀病毒之RdRp基因的核酸。In one embodiment, the detection target of the method for detecting the novel coronavirus disclosed herein may be the nucleic acid of the RdRp gene of the novel coronavirus.
實施例Embodiment
A. 材料與方法A. Materials and Methods
A-1. 去活化的嚴重急性呼吸道症候群冠狀病毒2型 (SARS-CoV-2)(新型冠狀病毒)A-1. Deactivated severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) (novel coronavirus)
去活化的SARS-CoV-2病毒購自BEI Resources (Catalog No. NR-52286; Lot: 70034991)。Deactivated SARS-CoV-2 virus was purchased from BEI Resources (Catalog No. NR-52286; Lot: 70034991).
A-2. 合成之SARS-CoV-2 RNA控制組的製備A-2. Preparation of synthetic SARS-CoV-2 RNA control group
合成之SARS-CoV-2 RNA(GenBank ID: MT007544.1; 型號: 102019)購自Twist Bioscience。Synthetic SARS-CoV-2 RNA (GenBank ID: MT007544.1; Model No.: 102019) was purchased from Twist Bioscience.
將上述合成之SARS-CoV-2 RNA以無菌之1倍RNAsecure™ RNase Inactivation Reagent(廠牌:Thermo Fisher Scientific Inc.;型號:AM7006),稀釋至最終濃度2.5x10 4個拷貝/毫升(copies/mL),以作為每一次反轉錄恆溫環型擴增法(RT-LAMP)的正控制組。 The synthesized SARS-CoV-2 RNA was diluted to a final concentration of 2.5x10 4 copies/mL with sterile 1x RNAsecure™ RNase Inactivation Reagent (Brand: Thermo Fisher Scientific Inc.; Model: AM7006) to serve as a positive control for each RT-LAMP assay.
A-3. 反轉錄恆溫環型核酸擴增法所使用之引子:A-3. Primers used in reverse transcription constant temperature circular nucleic acid amplification method:
1. 針對GAPDH的引子組1. Primer set for GAPDH
以GAPDH之mRNA序列(NCBI獲取編號NM_001256799)的一部分(序列識別號:1)來設計針對GAPDH的引子組。A primer set targeting GAPDH was designed based on a portion of the GAPDH mRNA sequence (NCBI Accession No. NM_001256799) (SEQ ID No.: 1).
所設計出之用於反轉錄恆溫環型核酸擴增法的5個引子組如以下表1所示。The five primer sets designed for reverse transcription constant temperature circular nucleic acid amplification are shown in Table 1 below.
表1、對於序列識別號:1之核苷酸序列所選取之六個區域與所設計之引子組
2. 針對嚴重急性呼吸道症候群冠狀病毒2型的引子組RdRp基因之核酸的引子組2. Primer set for SARS-CoV-2 Primer set for RdRp gene nucleic acid
以嚴重急性呼吸道症候群冠狀病毒2型之ORF1ab核酸(NCBI獲取編號MN908947)的一部分(序列識別號:11來設計針對RdRp基因之核酸的引子組。A primer set targeting the RdRp gene nucleic acid was designed using a portion of the ORF1ab nucleic acid of SARS-CoV-2 (NCBI Accession No. MN908947) (SEQ ID No. 11).
所設計出之用於反轉錄恆溫環型核酸擴增法的1個引子組如以下表2所示。The primer set designed for the reverse transcription constant temperature circular nucleic acid amplification method is shown in Table 2 below.
表2、對於序列識別號:11之核苷酸序列所選取之六個區域與所設計之引子組
A-5. 反轉錄恆溫環型核酸擴增法A-5. Reverse transcription constant temperature circular nucleic acid amplification method
1.引子使用濃度:1. Primer concentration:
反轉錄恆溫環型核酸擴增法中,所使用之各引子的濃度如下所述。The concentrations of the primers used in the reverse transcription constant temperature circular nucleic acid amplification method are as follows.
用來擴增人類GAPDH基因之各引子的最終濃度:FIP/BIP為0.8 μM;F3/B3為0.1 μM。The final concentrations of primers used to amplify the human GAPDH gene were: 0.8 μM for FIP/BIP and 0.1 μM for F3/B3.
用來擴增SARS-CoV-2 RdRp核酸序列之各引子的最終濃度:FIP/BIP為0.8 μM;F3/B3為0.1 μM;FLP/BLP為0.2 μM。The final concentrations of primers used to amplify the SARS-CoV-2 RdRp nucleic acid sequence were: 0.8 μM for FIP/BIP; 0.1 μM for F3/B3; and 0.2 μM for FLP/BLP.
2. 反應試劑與條件2. Reagents and conditions
(1) 以市售RT/ Bstmix試劑為聚合酶 (1) Use commercially available RT/ Bst mix reagent as polymerase
以市售RT/ Bstmix試劑(WarmStart® LAMP kit (Cat No. E1700L);廠牌New England Biolabs)進行反轉錄恆溫環型核酸擴增法。 The reverse transcription constant temperature circular nucleic acid amplification method was performed using a commercially available RT/ Bst mix reagent (WarmStart® LAMP kit (Cat No. E1700L); brand: New England Biolabs).
反應溫度為65℃,反應時間為60分鐘。反應所需各項成分與其體積如表3所示:The reaction temperature is 65°C and the reaction time is 60 minutes. The components and volumes required for the reaction are shown in Table 3:
表3
(2) 以重組之 BstDNA聚合酶大片段(recombinant BstDNA polymerase large fragment)為聚合酶 (2) Using recombinant Bst DNA polymerase large fragment as the polymerase
以重組之 BstDNA聚合酶大片段為聚合酶,其胺基酸序列(序列識別號:10)如下所示: MGSSHHHHHHSGGPEQKLISEEDLPGGSWSHPQFEKSGLVPRGSGRAVQTDEGEKPLAGMDFAIADSVTDEMLADKAALVVEVVGDNYHHAPIVGIALANERGRFFLRPETALADPKFLAWLGDETKKKTMFDSKRAAVALKWKGIELRGVVFDLLLAAYLLDPAQAAGDVAAVAKMHQYEAVRSDEAVYGKGAKRTVPDEPTLAEHLVRKAAAIWALEEPLMDELRRNEQDRLLTELEQPLAGILANMEFTGVKVDTKRLEQMGAELTEQLQAVERRIYELAGQEFNINSPKQLGTVLFDKLQLPVLKKTKTGYSTSADVLEKLAPHHEIVEHILHYRQLGKLQSTYIEGLLKVVHPVTGKVHTMFNQALTQTGRLSSVEPNLQNIPIRLEEGRKIRQAFVPSEPDWLIFAADYSQIELRVLAHIAEDDNLIEAFRRGLDIHTKTAMDIFHVSEEDVTANMRRQAKAVNFGIVYGISDYGLAQNLNITRKEAAEFIERYFASFPGVKQYMDNIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAERTAMNTPIQGSAADIIKKAMIDLSVRLREERLQARLLLQVHDELILEAPKEEIERLCRLVPEVMEQAVALRVPLKVDYHYGPTWYDAK N-端序列所包含之組胺酸-標誌(HHHHHH)(序列識別號:28)、c-myc-標誌(EQKLISEEDL) (序列識別號:29)、Strep-標誌II(WSHPQFEK)(序列識別號:30)與凝血酶(thrombin)切位(cleavage site)(LVPRGS)(序列識別號:31)被以粗體顯示且畫底線。 The recombinant Bst DNA polymerase large fragment was used as the polymerase, and its amino acid sequence (SEQ ID NO: 10) is shown below: MGSSHHHHHHSGGPEQKLISEEDLPGGSWSHPQFEKSGLVPRGSGR The histidine-signature (HHHHHH) (SEQ ID NO: 28), c-myc-signature (EQKLISEEDL) (SEQ ID NO: 29), Strep-signature II (WSHPQFEK) (SEQ ID NO: 30) and thrombin cleavage site (LVPRGS) (SEQ ID NO: 31) contained in the N-terminal sequence are shown in bold and underlined.
反應溫度為65℃,反應時間為60分鐘。反應所需各項成分與其體積如表4所示:The reaction temperature is 65°C and the reaction time is 60 minutes. The components and volumes required for the reaction are shown in Table 4:
表4
A-6. 側流免疫分析(lateral flow immunoassay)A-6. Lateral flow immunoassay
以市售核酸側流免疫分析(Nucleic Acid Lateral Flow Immunoassay, NALFIA)試片PCRD FLEX Dipstick(型號FG-FD51676,廠牌Abingdon Health)進行側流免疫分析。Lateral flow immunoassay was performed using a commercially available nucleic acid lateral flow immunoassay (NALFIA) test strip PCRD FLEX Dipstick (model FG-FD51676, brand Abingdon Health).
PCRD FLEX Dipstick根據分析物流動方向依序具有一分析物添加區、一結合區、一第一測試線(T1)、一第二測試線(T2)與一控制線(C)。當將試片之分析物添加區插入含有反轉錄恆溫環型核酸擴增法之產物的反應樣本中時,於試片之結合區上之表面塗覆有中性卵白素(NeutrAvidin)的碳粒子會與反應樣本中標誌有長葉毛地黃配質(DIG)/生物素之DNA擴增產物的生物素與標誌有螢光素(FAM)/生物素之DNA擴增產物結合,並利用毛細現象沿著硝化纖維膜移動。The PCRD FLEX Dipstick has an analyte addition zone, a binding zone, a first test line (T1), a second test line (T2) and a control line (C) in order according to the flow direction of the analyte. When the analyte addition zone of the test strip is inserted into a reaction sample containing the product of the reverse transcription constant temperature cyclic nucleic acid amplification method, the carbon particles coated with NeutrAvidin on the surface of the binding zone of the test strip will bind to the biotin of the DNA amplification product labeled with digitalis glycosides (DIG)/biotin and the DNA amplification product labeled with fluorescein (FAM)/biotin in the reaction sample and move along the nitrocellulose membrane using the capillary phenomenon.
若反應樣本中標誌有DIG/生物素之DNA擴增產物,則標誌有DIG/生物素之DNA擴增產物的DIG可與T1測試線中的抗DIG抗體結合,形成暗灰色的複合物,並可藉由肉眼辨識;若反應樣本中標誌有FAM/生物素之DNA擴增產物,則標誌有FAM/生物素之DNA擴增產物的FAM可與T2測試線中的抗FAM抗體結合,產生肉眼可見的暗灰色線條。If the reaction sample contains DNA amplification products labeled with DIG/biotin, the DIG of the DNA amplification products labeled with DIG/biotin can bind to the anti-DIG antibody in the T1 test line to form a dark gray complex that can be identified by the naked eye; if the reaction sample contains DNA amplification products labeled with FAM/biotin, the FAM of the DNA amplification products labeled with FAM/biotin can bind to the anti-FAM antibody in the T2 test line to produce a dark gray line visible to the naked eye.
最後,塗附有小鼠血清之碳粒子會於控制線被抓取而產生肉眼可見的暗灰色線條,作為核酸側流免疫分析試片的品管線。Finally, the carbon particles coated with mouse serum are captured at the control line to produce dark gray lines visible to the naked eye, serving as the quality control line for the nucleic acid lateral flow immunoassay test strip.
B. 結果B. Results
實施例1Embodiment 1
經由反轉錄恆溫環型核酸擴增法(一步驟反應)之唾液中的SARS-CoV-2 RdRp與人類GAPDH的偵測Detection of SARS-CoV-2 RdRp and human GAPDH in saliva by reverse transcription isothermal circular nucleic acid amplification (one-step reaction)
將合成之SARS-CoV-2 RNA控制組(Twist Bioscience)以最終濃度為1x10 4個拷貝/毫升加入新型冠狀病毒陰性唾液檢體中。 Synthetic SARS-CoV-2 RNA control (Twist Bioscience) was added to the SARS-CoV-2 negative saliva samples at a final concentration of 1x104 copies/mL.
之後,將上述含合成之SARS-CoV-2 RNA控制組之唾液檢體以QIAamp Viral RNA Mini Kit (廠牌: Qiagen,型號: 52906)萃取,以獲得總RNA。Afterwards, the saliva samples containing the synthetic SARS-CoV-2 RNA control group were extracted using QIAamp Viral RNA Mini Kit (brand: Qiagen, model number: 52906) to obtain total RNA.
將9 µL總RNA作為核酸模板與RdRp引子組(順向內引子之5’端標示有FAM,逆向內引子之5’端標示有生物素)及RT/ Bstmix混合並進行一反轉錄恆溫環型核酸擴增法。又,將9 μL總RNA作為核酸模板與GAPDH引子組(順向內引子之5’端標示有DIG,逆向內引子之5’端標示有生物素)及RT/ Bstmix混合並進行另一反轉錄恆溫環型核酸擴增法。另一方面,以9 µL之1倍RNAsecure™ RNase Inactivation Reagent取代總RNA模板,將RdRp引子組與GAPDH引子組分別加入其中,並與RT/ Bstmix混合後進行反轉錄恆溫環型核酸擴增法,以作為無模板控制組 (no template control, NTC)。此外,將合成之SARS-CoV-2 RNA控制組直接與RdRp引子組(順向內引子之5’端標示有FAM,逆向內引子之5’端標示有生物素)及RT/ Bstmix混合並進行一反轉錄恆溫環型核酸擴增法,以作為正控制組(positive control)。 9 μL of total RNA was used as a nucleic acid template and mixed with the RdRp primer set (the 5' end of the forward inner primer was labeled with FAM, and the 5' end of the reverse inner primer was labeled with biotin) and RT/ Bst mix, and then a reverse transcription constant temperature circular nucleic acid amplification method was performed. In addition, 9 μL of total RNA was used as a nucleic acid template and mixed with the GAPDH primer set (the 5' end of the forward inner primer was labeled with DIG, and the 5' end of the reverse inner primer was labeled with biotin) and RT/ Bst mix, and then another reverse transcription constant temperature circular nucleic acid amplification method was performed. On the other hand, 9 µL of 1x RNAsecure™ RNase Inactivation Reagent was used to replace the total RNA template, and the RdRp primer set and GAPDH primer set were added to them respectively, and mixed with RT/ Bst mix and then subjected to reverse transcription constant temperature circular nucleic acid amplification method as a no template control (NTC). In addition, the synthetic SARS-CoV-2 RNA control group was directly mixed with the RdRp primer set (the 5' end of the forward inner primer was labeled with FAM, and the 5' end of the reverse inner primer was labeled with biotin) and RT/ Bst mix and subjected to a reverse transcription constant temperature circular nucleic acid amplification method as a positive control.
將上述含合成之SARS-CoV-2 RNA控制組之唾液檢體分別以RdRp引子組與GAPDH引子組進行反轉錄恆溫環型核酸擴增法所獲得之兩個產物分別以2%洋菜膠進行電泳分析,結果分別如第3A圖與第3B圖所示。The saliva samples containing the synthetic SARS-CoV-2 RNA control group were subjected to reverse transcription constant temperature cyclic nucleic acid amplification method using RdRp primer set and GAPDH primer set, respectively. The two products obtained were analyzed by electrophoresis using 2% agar. The results are shown in Figures 3A and 3B, respectively.
將上述含合成之SARS-CoV-2 RNA控制組之唾液檢體分別以RdRp引子組與GAPDH引子組進行反轉錄恆溫環型核酸擴增法所獲得之產物混合所獲得之混合物進行側流免疫分析,結果如第3C圖所示。The saliva samples containing the synthetic SARS-CoV-2 RNA control group were subjected to reverse transcription constant temperature cyclic nucleic acid amplification method using RdRp primer set and GAPDH primer set respectively, and the mixture obtained was mixed for lateral flow immunoassay. The results are shown in Figure 3C.
第3A圖顯示,將上述含合成之SARS-CoV-2 RNA控制組之唾液檢體所萃取出之總RNA以RdRp引子組進行反轉錄恆溫環型核酸擴增法,可獲得梯狀擴增產物。而正控制組也可獲得梯狀擴增產物。Figure 3A shows that the total RNA extracted from the saliva sample containing the synthetic SARS-CoV-2 RNA control group was subjected to reverse transcription constant temperature circular nucleic acid amplification method using the RdRp primer set to obtain a ladder-like amplification product. The positive control group also obtained a ladder-like amplification product.
第3B圖也顯示,將上述含合成之SARS-CoV-2 RNA控制組之唾液檢體所萃取出之總RNA以GAPDH引子組進行反轉錄恆溫環型核酸擴增法,可獲得梯狀擴增產物。FIG. 3B also shows that the total RNA extracted from the saliva sample containing the synthetic SARS-CoV-2 RNA control group was subjected to reverse transcription constant temperature circular nucleic acid amplification method using the GAPDH primer set to obtain a ladder-shaped amplification product.
第3C圖顯示,上述含合成之SARS-CoV-2 RNA控制組之唾液檢體分別以GAPDH引子組與RdRp引子組進行反轉錄恆溫環型核酸擴增法所獲得之產物,可分別於一側流免疫層試片之T1測試線與T2測試線產生暗灰色線條。正控制組的產物只會在T2測試線產生暗灰色線條,而無模板控制組的產物在T1測試線與T2測試線皆無顯現暗灰色線條。Figure 3C shows that the products obtained by reverse transcription constant temperature cyclic nucleic acid amplification method using GAPDH primer set and RdRp primer set in the saliva sample containing the synthetic SARS-CoV-2 RNA control group can generate dark gray lines on the T1 test line and T2 test line of the lateral flow immunolayer test strip. The product of the positive control group only generates a dark gray line on the T2 test line, while the product of the no template control group does not show a dark gray line on both the T1 test line and the T2 test line.
由上述結果可知,本揭露之RdRp引子組確實可以偵測唾液檢體中之SARS-CoV-2,而GAPDH引子組在唾液檢體之總RNA的反轉錄恆溫環型核酸擴增法中確實可獲得產物,並可以此產物作為一內部控制組。From the above results, it can be seen that the RdRp primer set disclosed in the present invention can indeed detect SARS-CoV-2 in saliva samples, and the GAPDH primer set can indeed obtain a product in the reverse transcription constant temperature circular nucleic acid amplification method of total RNA in saliva samples, and this product can be used as an internal control group.
實施例2Embodiment 2
經由反轉錄恆溫環型核酸擴增法(兩步驟反應)之SARS-CoV-2 RdRp的偵測Detection of SARS-CoV-2 RdRp by reverse transcription isothermal circular nucleic acid amplification (two-step reaction)
將合成之SARS-CoV-2 RNA控制組(Twist Bioscience)(最終濃度為1x10 4個拷貝/毫升)(單股RNA)作為模板與SuperScript IV反轉錄酶(Invitrogen)混合以進行反轉錄(50°C反應15分鐘),以形成RNA-cDNA雜合體(hybrid)。 The synthetic SARS-CoV-2 RNA control group (Twist Bioscience) (final concentration of 1x10 4 copies/ml) (single-stranded RNA) was mixed with SuperScript IV reverse transcriptase (Invitrogen) as a template for reverse transcription (50°C for 15 minutes) to form an RNA-cDNA hybrid.
接著,將反轉錄產物以95℃加熱3分鐘以使RNA降解而獲得單股cDNA。之後,將cDNA分別進行5倍與10倍稀釋。Next, the reverse transcription product was heated at 95°C for 3 minutes to degrade the RNA and obtain single-stranded cDNA. Afterwards, the cDNA was diluted 5-fold and 10-fold, respectively.
將2 µL cDNA(未經稀釋、5倍稀釋或10倍稀釋)進行恆溫環型核酸擴增法。並將恆溫環型核酸擴增法產物以2%洋菜膠進行電泳分析,結果分別如第4圖所示。2 µL cDNA (undiluted, 5-fold diluted, or 10-fold diluted) was subjected to constant temperature circular nucleic acid amplification method. The constant temperature circular nucleic acid amplification method product was analyzed by electrophoresis using 2% agar. The results are shown in Figure 4.
第4圖顯示,本揭露之RdRp引子組可以單股cDNA作為模板進行恆溫環型核酸擴增法並獲得產物。FIG. 4 shows that the RdRp primer set disclosed herein can be used to perform constant temperature circular nucleic acid amplification using single-stranded cDNA as a template to obtain products.
實施例3Embodiment 3
經由以重組之 BstDNA聚合酶大片段作為聚合酶之反轉錄恆溫環型核酸擴增法之SARS-CoV-2病毒RNA的偵測 Detection of SARS-CoV-2 viral RNA by reverse transcription isothermal circular nucleic acid amplification using recombinant Bst DNA polymerase large fragment as polymerase
於新型冠狀病毒陰性唾液檢體加入15,000個拷貝/毫升之去活化的SARS-CoV-2病毒液(BEI Resources, Catalog No. NR-52286; Lot: 70034991)。Add 15,000 copies/mL of deactivated SARS-CoV-2 virus solution (BEI Resources, Catalog No. NR-52286; Lot: 70034991) to the SARS-CoV-2 negative saliva sample.
將上述含去活化的SARS-CoV-2病毒液之唾液檢體進行核酸純化,以獲得總RNA。The saliva sample containing the deactivated SARS-CoV-2 virus fluid was purified to obtain total RNA.
將9 µL總RNA作為模板與RdRp引子組及重組之 BstDNA聚合酶大片段於65℃下進行恆溫環型核酸擴增法1小時。將所獲得之產物分別以2%洋菜膠進行電泳分析以及進行側流免疫分析。結果分別如第5A圖與第5B圖所示。 9 µL of total RNA was used as template and the RdRp primer set and recombinant Bst DNA polymerase large fragment were subjected to constant temperature circular nucleic acid amplification method at 65°C for 1 hour. The obtained products were analyzed by 2% agar electrophoresis and lateral flow immunoassay. The results are shown in Figures 5A and 5B, respectively.
第5A圖與第5B圖皆顯示,上述恆溫環型核酸擴增法確實可獲得擴增產物。由此實驗結果可得知,重組之 BstDNA聚合酶大片段具有內源性(endogenous)反轉錄酶活性,且本揭露之RdRp引子組能以單股RNA作為模板藉由此重組之 BstDNA聚合酶大片段,於65℃下進行反轉錄恆溫環型核酸擴增法。 Figures 5A and 5B both show that the above constant temperature circular nucleic acid amplification method can indeed obtain amplified products. From this experimental result, it can be known that the recombinant Bst DNA polymerase large fragment has endogenous reverse transcriptase activity, and the RdRp primer set disclosed in the present disclosure can use single-stranded RNA as a template through the recombinant Bst DNA polymerase large fragment to perform reverse transcription constant temperature circular nucleic acid amplification method at 65°C.
實施例4Embodiment 4
經熱處理之唾液直接經由反轉錄恆溫環型核酸擴增法偵測其中SARS-CoV-2病毒Direct detection of SARS-CoV-2 virus in heat-treated saliva by reverse transcription constant temperature circular nucleic acid amplification
去活性的SARS-CoV-2病毒以最終濃度10,000個拷貝/毫升或100,000個拷貝/毫升加入50 µL新型冠狀病毒陰性唾液檢體。將上述樣本與未添加病毒之陰性唾液檢體以以下兩種方式進行處理: (1) 將50 μL DPBS與2× RNAsecure加入上述樣本,並於95°C中加熱30分鐘; (2) 將蛋白酶(proteinase) K與2x RNAsecure加入上述樣本,並於95°C中加熱5分鐘。 Inactivated SARS-CoV-2 virus was added to 50 µL of COVID-19 negative saliva samples at a final concentration of 10,000 copies/mL or 100,000 copies/mL. The samples and negative saliva samples without virus addition were treated in the following two ways: (1) 50 μL of DPBS and 2× RNAsecure were added to the samples and heated at 95°C for 30 minutes; (2) Proteinase K and 2x RNAsecure were added to the samples and heated at 95°C for 5 minutes.
於上述兩種處理方式後,將9 μL加熱後的上清液作為核酸模板與RdRp引子組或GAPDH-103引子組混合以進行反轉錄恆溫環型核酸擴增法,並將所獲得之產物以2%洋菜膠進行電泳分析。結果如第6圖所示。After the above two treatments, 9 μL of the heated supernatant was used as a nucleic acid template and mixed with the RdRp primer set or the GAPDH-103 primer set to perform reverse transcription constant temperature cyclic nucleic acid amplification method, and the obtained products were analyzed by electrophoresis with 2% agar. The results are shown in Figure 6.
將相同病毒濃度的RdRp與GAPDH所放大出來的產物混合,並進行側流免疫分析。結果如第7圖所示。The products amplified by RdRp and GAPDH at the same viral concentration were mixed and subjected to lateral flow immunoassay. The results are shown in Figure 7.
依據實驗結果可知,藉由本揭露之RdRp引子組或GAPDH引子組,一唾液檢體無需經過核酸純化步驟即可直接進行以RT/ Bstmix為聚合酶的反轉錄恆溫環型核酸擴增法而獲得SARS-CoV-2病毒之RdRp RNA與人類GAPDH基因的擴增產物。 According to the experimental results, by using the RdRp primer set or GAPDH primer set disclosed herein, a saliva sample can be directly subjected to the reverse transcription constant temperature circular nucleic acid amplification method using RT/ Bst mix as a polymerase without going through a nucleic acid purification step to obtain the amplified products of the SARS-CoV-2 virus RdRp RNA and the human GAPDH gene.
實施例5Embodiment 5
GAPDH引子組之RT-LAMP反應溫度測試RT-LAMP reaction temperature test of GAPDH primer set
收取Expi293細胞。一部分細胞以QIAamp genomic DNA kits (Qiagen)萃取基因體DNA,隨後以RNase A/T1 (Thermo Scientific) 處理。另一部分之細胞則以Direct-zol RNA Miniprep (Zymo Research) 萃取總RNA,並進行於管柱上以DNase I 進行消化。Expi293 cells were collected. Genomic DNA was extracted from one part of the cells using QIAamp genomic DNA kits (Qiagen) and then treated with RNase A/T1 (Thermo Scientific). Total RNA was extracted from another part of the cells using Direct-zol RNA Miniprep (Zymo Research) and digested with DNase I on a column.
將經純化之基因體DNA與總RNA作為測試GAPDH 引子組的核酸模板。將反轉錄恆溫環型核酸擴增法之反應溫度分別設定為65℃、68℃與70℃以進行測試。當反應溫度定為65℃時,GAPDH-103引子組可同時擴增基因體DNA與總RNA中的GAPDH基因,而GAPDH-103-BIP-3引子組與GAPDH-103-BIP-4引子組則只能擴增總RNA中的GAPDH基因(第8A圖)。Purified genomic DNA and total RNA were used as nucleic acid templates to test the GAPDH primer set. The reaction temperature of the reverse transcription constant temperature circular nucleic acid amplification method was set to 65℃, 68℃, and 70℃ for testing. When the reaction temperature was set at 65℃, the GAPDH-103 primer set could amplify the GAPDH gene in both genomic DNA and total RNA, while the GAPDH-103-BIP-3 primer set and the GAPDH-103-BIP-4 primer set could only amplify the GAPDH gene in total RNA (Figure 8A).
當反應溫度提高到68℃,GAPDH-103-BIP-3引子組與GAPDH-103-BIP-4引子組仍然保有只擴增總RNA中GAPDH基因的特性。對GAPDH-103引子組而言,提高溫度可增加此組引子對基因體DNA與總RNA間的鑑別性(第8B圖)。When the reaction temperature was raised to 68°C, the GAPDH-103-BIP-3 and GAPDH-103-BIP-4 primer sets still retained the property of amplifying only the GAPDH gene in total RNA. For the GAPDH-103 primer set, increasing the temperature increased the discrimination of this primer set between genomic DNA and total RNA (Figure 8B).
當反應溫度上升到70℃時,GAPDH-103引子組僅少許擴增總RNA中的GAPDH基因,而GAPDH-103-BIP-3引子組與GAPDH-103-BIP-4引子組依然具有只擴增總RNA中之GAPDH基因的特性(第8C圖)。When the reaction temperature was raised to 70°C, the GAPDH-103 primer set only slightly amplified the GAPDH gene in the total RNA, while the GAPDH-103-BIP-3 primer set and the GAPDH-103-BIP-4 primer set still had the characteristic of only amplifying the GAPDH gene in the total RNA (Figure 8C).
上述實驗結果顯示,相較於GAPDH-103引子組,GAPDH-103-BIP-3引子組與GAPDH-103-BIP-4引子組具有較廣的溫度容許範圍 (temperature tolerance)。The above experimental results show that compared with the GAPDH-103 primer set, the GAPDH-103-BIP-3 primer set and the GAPDH-103-BIP-4 primer set have a wider temperature tolerance range.
實施例6Embodiment 6
經取代之GAPDH引子組擴增法測試:Substituted GAPDH primer set amplification assay:
收取Expi293細胞。一部分細胞以QIAamp genomic DNA kits (Qiagen)萃取基因體DNA,隨後以RNase A/T1 (Thermo Scientific) 處理。另一部分之細胞則以Direct-zol RNA Miniprep (Zymo Research) 萃取總RNA,並進行於管柱上以DNase I 進行消化。Expi293 cells were collected. Genomic DNA was extracted from one part of the cells using QIAamp genomic DNA kits (Qiagen) and then treated with RNase A/T1 (Thermo Scientific). Total RNA was extracted from another part of the cells using Direct-zol RNA Miniprep (Zymo Research) and digested with DNase I on a column.
將經純化之基因體DNA與總RNA作為測試GAPDH 引子組的核酸模板。將RT-LAMP反應溫度設定為65℃。Purified genomic DNA and total RNA were used as nucleic acid templates for testing the GAPDH primer set. The RT-LAMP reaction temperature was set at 65°C.
以肌苷取代GAPDH-103引子組中B3上的五個核酸 (標示為GAPDH-103-B3-I),則可使引子組僅以總RNA為模板,對GAPDH基因進行擴增(第9圖)。此結果顯示,人類GAPDH基因的引子組經過肌苷修飾後,可以不受基因體DNA序列的干擾,只針對mRNA進行反轉錄恆溫環型核酸擴增法。By replacing the five nucleic acids on B3 in the GAPDH-103 primer set with inosine (labeled as GAPDH-103-B3-I), the primer set can amplify the GAPDH gene using only total RNA as a template (Figure 9). This result shows that after the primer set of the human GAPDH gene is modified with inosine, it can be unaffected by the DNA sequence of the genome and only target mRNA for reverse transcription homeostatic cyclic nucleic acid amplification.
另外將GAPDH-103引子組中BIP部分序列進行挪移,形成GAPDH-103-BIP-3與GAPDH-103-BIP-4兩引子組。實驗結果顯示,兩引子組只以總RNA為模板,專一性地擴增GAPDH基因。In addition, the BIP sequence in the GAPDH-103 primer set was moved to form the GAPDH-103-BIP-3 and GAPDH-103-BIP-4 primer sets. The experimental results showed that the two primer sets only used total RNA as a template to specifically amplify the GAPDH gene.
實施例7Embodiment 7
熱處理樣本中偵測RdRp與GAPDH RNA:Detection of RdRp and GAPDH RNA in heat-treated samples:
去活性的SARS-CoV-2病毒以最終濃度10,000個拷貝/毫升或100,000個拷貝/毫升加入50 µL新型冠狀病毒陰性唾液檢體。將上述樣本與未添加病毒之陰性唾液檢體以95℃加熱5分鐘以獲得一經熱處理之樣本。Inactivated SARS-CoV-2 virus was added to 50 µL of novel coronavirus negative saliva sample at a final concentration of 10,000 copies/mL or 100,000 copies/mL. The above sample and the negative saliva sample without virus addition were heated at 95℃ for 5 minutes to obtain a heat-treated sample.
將9 µL之經熱處理樣本作為模板分別與RdRp引子組與帶有肌苷取代的GAPDH引子組(GAPDH-103-B3-I)混合並於65℃下進行反轉錄恆溫環型核酸擴增法。將所獲得之產物分別以2%洋菜膠進行電泳分析。結果分別如第10A圖與第10B圖所示。9 µL of the heat-treated sample was used as a template and mixed with the RdRp primer set and the GAPDH primer set with inosine substitution (GAPDH-103-B3-I) and subjected to reverse transcription constant temperature circular nucleic acid amplification at 65°C. The obtained products were analyzed by electrophoresis with 2% agar. The results are shown in Figures 10A and 10B, respectively.
將上述經熱處理樣本分別以RdRp引子組與GAPDH引子組進行反轉錄恆溫環型核酸擴增法所獲得之產物混合所獲得之混合物進行側流免疫分析,結果如第10C圖所示。The heat-treated samples were subjected to reverse transcription constant temperature circular nucleic acid amplification using RdRp primer set and GAPDH primer set, respectively, and the mixture was mixed and subjected to lateral flow immunoassay. The results are shown in FIG10C .
實驗結果顯示,藉由本揭露之RdRp引子組或GAPDH引子組,一唾液檢體無需經過核酸純化步驟即可直接進行以RT/ Bstmix為聚合酶的反轉錄恆溫環型核酸擴增法而獲得SARS-CoV-2病毒之RdRp RNA與人類GAPDH RNA的擴增產物,並以電泳分析與側流免疫分析確認擴增產物。RdRp引子組與肌苷取代之GAPDH引子組皆能應用於經熱處理之樣本中,且透過GAPDH擴增產物可確認樣本RNA在熱處理過程中有被釋放出來。 The experimental results show that, by using the RdRp primer set or GAPDH primer set disclosed herein, a saliva sample can be directly subjected to a reverse transcription constant temperature cyclic nucleic acid amplification method using RT/ Bst mix as a polymerase without going through a nucleic acid purification step to obtain amplification products of SARS-CoV-2 virus RdRp RNA and human GAPDH RNA, and the amplification products are confirmed by electrophoresis analysis and lateral flow immunoassay. Both the RdRp primer set and the inosine-substituted GAPDH primer set can be applied to heat-treated samples, and the GAPDH amplification product can confirm that the sample RNA is released during the heat treatment process.
實施例8Embodiment 8
以帶有RNase H活性之反轉錄酵素進行反轉錄恆溫環型核酸擴增法:Reverse transcription isothermal circular nucleic acid amplification method using reverse transcriptase with RNase H activity:
將體外轉錄之RdRp RNA作為模板與帶有RNase H活性之RocketScript反轉錄酶 (Bioneer)混合,以將RNA反轉錄成cDNA,隨後再進行恆溫環型核酸擴增法。The in vitro transcribed RdRp RNA was used as a template and mixed with RocketScript reverse transcriptase (Bioneer) with RNase H activity to reverse transcribe the RNA into cDNA, followed by constant temperature circular nucleic acid amplification.
在兩步驟的反轉錄恆溫環型核酸擴增法中,體外轉錄之RdRp RNA以最終濃度為6x10 6個拷貝/毫升添加,分別於50°C與65°C下反應15分鐘,隨後再以95°C加熱5分鐘。將2 μL之反轉錄產物與重組 BstDNA聚合酶大片段及RdRp引子組混合,並於65°C下進行恆溫環型核酸擴增法1小時。將所獲得之產物分別以2%洋菜膠進行電泳分析以及進行側流免疫分析。結果分別如第11A圖與第11B圖所示。 In the two-step reverse transcription constant temperature circular nucleic acid amplification method, in vitro transcribed RdRp RNA was added at a final concentration of 6x10 6 copies/mL, reacted at 50°C and 65°C for 15 minutes, and then heated at 95°C for 5 minutes. 2 μL of the reverse transcription product was mixed with recombinant Bst DNA polymerase large fragment and RdRp primer set, and constant temperature circular nucleic acid amplification method was performed at 65°C for 1 hour. The obtained products were analyzed by electrophoresis with 2% agar and lateral flow immunoassay. The results are shown in Figures 11A and 11B, respectively.
在一步驟反轉錄恆溫環型核酸擴增法中,體外轉錄之RdRp RNA (1x10 4個拷貝)與RdRp引子組、RocketScript Reverse Transcriptase及重組 BstDNA聚合酶大片段混合,於65°C中反應1小時。將所獲得之產物分別以2%洋菜膠進行電泳分析以及進行側流免疫分析。結果分別如第12A圖與第12B圖所示。 In the one-step reverse transcription constant temperature circular nucleic acid amplification method, in vitro transcribed RdRp RNA (1x10 4 copies) was mixed with RdRp primer set, RocketScript Reverse Transcriptase and recombinant Bst DNA polymerase large fragment and reacted at 65°C for 1 hour. The obtained products were analyzed by electrophoresis with 2% agar and lateral flow immunoassay. The results are shown in Figures 12A and 12B, respectively.
由實驗結果可知,本揭露之RdRp引子組能以單股RNA作為模板藉由帶有RNase H活性之反轉錄酵素進行反轉錄。The experimental results show that the RdRp primer set disclosed herein can be reverse transcribed using single-stranded RNA as a template by a reverse transcriptase with RNase H activity.
實施例9Embodiment 9
引子組之比較Comparison of primer sets
將本揭露之引子組, GAPDH-103引子組,與並非於本揭露之設計區段所設計之引子組,例如GAPDH-5引子組以及GAPDH-90引子組,分別進行反轉錄恆溫環型核酸擴增法。引子組GAPDH-5以及引子組GAPDH-90之設計區段與其序列如表5所示。The primer set disclosed in the present invention, the GAPDH-103 primer set, and the primer set not designed in the design segment disclosed in the present invention, such as the GAPDH-5 primer set and the GAPDH-90 primer set, were subjected to the reverse transcription constant temperature circular nucleic acid amplification method. The design segments and sequences of the primer set GAPDH-5 and the primer set GAPDH-90 are shown in Table 5.
收取Expi293細胞,並以Direct-zol RNA Miniprep (Zymo Research)萃取Expi293細胞總RNA。之後將所萃取之總RNA於管柱上以DNase I進行消化。新型冠狀病毒陰性唾液樣品以QIAamp Viral RNA Mini Kit進行萃取,以獲得新型冠狀病毒陰性唾液的總RNA。Expi293 cells were harvested and total RNA was extracted using Direct-zol RNA Miniprep (Zymo Research). The extracted total RNA was then digested on the column with DNase I. The SARS-CoV-2-negative saliva samples were extracted using the QIAamp Viral RNA Mini Kit to obtain total RNA from SARS-CoV-2-negative saliva.
從Expi293之總RNA中分取9 μL作為核酸模板,分別加入裝有GAPDH-5引子組、GAPDH-90引子組及GAPDH-103引子組的管子中,與RT/ Bstmix混合後置於65°C進行反轉錄恆溫環型核酸擴增法1小時。從上述新型冠狀病毒陰性唾液萃取的總RNA分取9 μL作為核酸模板,分別加入裝有GAPDH-5引子組、GAPDH-90引子組及GAPDH-103引子組的管子中,與RT/ Bstmix混合後於65°C中反應1小時。將所獲得之產物以2%洋菜膠進行電泳分析,結果分別如第13圖所示。 9 μL of total RNA from Expi293 was taken as nucleic acid template, added to tubes containing GAPDH-5 primer set, GAPDH-90 primer set and GAPDH-103 primer set, mixed with RT/ Bst mix and placed at 65°C for 1 hour for reverse transcription constant temperature cycle nucleic acid amplification method. 9 μL of total RNA extracted from the above-mentioned novel coronavirus negative saliva was taken as nucleic acid template, added to tubes containing GAPDH-5 primer set, GAPDH-90 primer set and GAPDH-103 primer set, mixed with RT/ Bst mix and reacted at 65°C for 1 hour. The obtained products were analyzed by electrophoresis with 2% agar, and the results are shown in Figure 13.
表5
結果如第13圖所示。The result is shown in Figure 13.
實驗結果顯示,相較於GAPDH-103引子組,GAPDH-5引子組以及GAPDH-90引子組在無模板控制組也出現擴增產物,因此並無法作為偵測GAPDH的引子組。The experimental results showed that compared with the GAPDH-103 primer set, the GAPDH-5 primer set and the GAPDH-90 primer set also produced amplified products in the no-template control group, and therefore could not be used as primer sets for detecting GAPDH.
雖然本發明已以較佳實施例揭露如上,然其並非用以限定本發明,任何熟習此技藝者,在不脫離本發明之精神和範圍內,當可作些許之更動與潤飾,因此本發明之保護範圍當視後附之申請專利範圍所界定者為準。Although the present invention has been disclosed as above with preferred embodiments, it is not intended to limit the present invention. Anyone skilled in the art may make some changes and modifications without departing from the spirit and scope of the present invention. Therefore, the protection scope of the present invention shall be subject to the scope defined in the attached patent application.
100:目標基因 101:順向內引子(forward inner primer, FIP) 103:順向外引子(forward outer primer) 105:逆向內引子(backward inner primer, BIP) 107:逆向外引子(backward outer primer) 109:順向環引子(forward loop primer, FLP) 111:逆向環引子(backward loop primer, BLP) BIP-G:針對GAPDH核酸之逆向內引子 FIP-G:針對GAPDH核酸之順向內引子 BIP-T:針對標的核酸之逆向內引子 FIP-T:針對標的核酸之順向內引子 M1:第一標誌 M2:第二標誌 M3:第三標誌 200、200’或200’’:側流免疫分析試片 201:分析物添加區 203:結合區 203BP:第一結合顆粒 203B:第一結合分子 203P:連接第一結合分子203B之顆粒 205:GAPDH偵測區 205B:第二結合分子 206:標的核酸偵測區 206B:第四結合分子 207:試片控制區 207B:第三結合分子 100: target gene 101: forward inner primer (FIP) 103: forward outer primer (FIP) 105: backward inner primer (BIP) 107: backward outer primer (BLP) 109: forward loop primer (FLP) 111: backward loop primer (BLP) BIP-G: reverse inner primer for GAPDH nucleic acid FIP-G: forward inner primer for GAPDH nucleic acid BIP-T: reverse inner primer for target nucleic acid FIP-T: forward inner primer for target nucleic acid M1: first marker M2: second marker M3: third marker 200, 200' or 200'': Lateral flow immunoassay test strip 201: Analyte addition zone 203: Binding zone 203BP: First binding particle 203B: First binding molecule 203P: Particle connected to first binding molecule 203B 205: GAPDH detection zone 205B: Second binding molecule 206: Target nucleic acid detection zone 206B: Fourth binding molecule 207: Test strip control zone 207B: Third binding molecule
第1A圖、第1B圖與第1C圖顯示,於本揭露之GAPDH核酸偵測套組中,偵測GAPDH核酸之引子組的設計及其操作原理,以及,於標的核酸偵測套組中,偵測GAPDH核酸之引子組及偵測標的核酸之引子組的設計及其操作原理。 第2A圖顯示,於本揭露之一實施例中,側流免疫分析試片之作用機制的示意圖。 第2B圖顯示,於本揭露之另一實施例中,側流免疫分析試片之作用機制的示意圖。 第2C圖顯示,於本揭露之又一實施例中,側流免疫分析試片之作用機制的示意圖。 第3A圖顯示,含合成之SARS-CoV-2 RNA控制組之唾液檢體的總RNA利用RdRp引子組(順向內引子之5’端標示有FAM,逆向內引子之5’端標示有生物素)經由反轉錄恆溫環型核酸擴增法(一步驟反應)所產生之產物的電泳分析結果。正控制組(positive control, PC):將合成之SARS-CoV-2 RNA控制組直接與RdRp引子組及RT/ Bstmix混合並進行一反轉錄恆溫環型核酸擴增法所產生之產物。無模板控制組(no template control, NTC):將1倍RNAsecure™ RNase Inactivation Reagent(用於取代總RNA模板)與RdRp引子組及RT/ Bstmix混合以進行一反轉錄恆溫環型核酸擴增法所產生的產物。M:DNA分子量標準品;PC:正控制組;NTC:無模板控制組;10 4:含10 4拷貝/毫升之合成SARS-CoV-2 RNA控制組之唾液檢體的總RNA利用RdRp引子組經由反轉錄恆溫環型核酸擴增法所產生之產物。 第3B圖顯示,含合成之SARS-CoV-2 RNA控制組之唾液檢體的總RNA利用GAPDH-103引子組(順向內引子之5’端標示有DIG,逆向內引子之5’端標示有生物素)經由反轉錄恆溫環型核酸擴增法(一步驟反應)所產生之產物的電泳分析結果。無模板控制組(no template control, NTC):將1倍RNAsecure™ RNase Inactivation Reagent(用於取代總RNA模板)與GAPDH-103及RT/ Bstmix混合以進行一反轉錄恆溫環型核酸擴增法所產生的產物。M:DNA分子量標準品;NTC:無模板控制組;10 4:含10 4拷貝/毫升之合成SARS-CoV-2 RNA控制組之唾液檢體的總RNA利用組GAPDH-103引子組經由反轉錄恆溫環型核酸擴增法所產生之產物。 第3C圖顯示,將含合成之SARS-CoV-2 RNA控制組之唾液檢體分別以RdRp引子組與GAPDH-103引子組進行反轉錄恆溫環型核酸擴增法(一步驟反應)所獲得之兩個產物取等量混合所獲得的混合物的側流免疫分析結果。正控制組:將合成之SARS-CoV-2 RNA控制組直接與RdRp引子組及RT/ Bstmix混合並進行一反轉錄恆溫環型核酸擴增法所產生之產物。無模板控制組(no template control, NTC):將第3A圖之無模板控制組與第3B圖之無模板控制組取等量混合所獲得之混合物。10 4拷貝/毫升:含10 4拷貝/毫升之合成SARS-CoV-2 RNA控制組之唾液檢體分別以RdRp引子組與GAPDH-103引子組進行反轉錄恆溫環型核酸擴增法所獲得之兩個產物等量混合所獲得的混合物;NTC:無模板控制組; C:控制線;T1:第一測試線;T2:第二測試線。 第4圖顯示,合成之SARS-CoV-2 RNA控制組藉由RdRp引子組進行反轉錄恆溫環型核酸擴增法(兩步驟反應)所產生之產物的電泳分析結果。M:DNA分子量標準品;N:無模板控制組。 第5A圖顯示,SARS-CoV-2病毒RNA藉由利用RdRp引子組並以重組之 BstDNA聚合酶大片段作為聚合酶的反轉錄恆溫環型核酸擴增法所產生之產物的電泳分析結果。M:DNA分子量標準品;BEI:去活化的SARS-CoV-2病毒液;NTC:無模板控制組。 第5B圖顯示,SARS-CoV-2病毒RNA藉由利用RdRp引子組並以重組之 BstDNA聚合酶大片段作為聚合酶的反轉錄恆溫環型核酸擴增法所產生之產物的側流免疫分析結果。BEI病毒:去活化的SARS-CoV-2病毒液;NTC:無模板控制組;C:控制線; T2:第二測試線。 第6圖顯示,將添加有去活化SARS-CoV-2病毒液之新型冠狀病毒陰性唾液檢體經熱處理後,分別以RdRp引子組與GAPDH-103引子組對前述樣本直接進行反轉錄恆溫環型核酸擴增,並將分別獲得之產物進行電泳分析所獲得的結果。M:DNA分子量標準品;PC:正控制組;NTC-RdRp:RdRp引子組之無模板控制組;NTC-GAPDH:GAPDH-103引子組之無模板控制組。 第7圖顯示,將添加有去活化SARS-CoV-2病毒液之新型冠狀病毒陰性唾液檢體經熱處理後,分別以RdRp引子組與GAPDH-103引子組對前述樣本直接進行反轉錄恆溫環型核酸擴增,並以分別獲得之產物混合後所獲得的混合物進行側流免疫分析的結果。NTC:無模板控制組;C:控制線;T1:第一測試線;T2:第二測試線。 第8A圖顯示,不同之GAPDH引子組於反應溫度65℃之反轉錄恆溫環型核酸擴增法所產生之產物的電泳分析結果。M:DNA分子量標準品;D:Expi293細胞基因體DNA;R:Expi293細胞總RNA;N:無模板控制組。 第8B圖顯示,不同之GAPDH引子組於反應溫度68℃之反轉錄恆溫環型核酸擴增法所產生之產物的電泳分析結果。M:DNA分子量標準品;D:Expi293細胞基因體DNA;R:Expi293細胞總RNA;N:無模板控制組。 第8C圖顯示,不同之GAPDH引子組於反應溫度70℃之反轉錄恆溫環型核酸擴增法所產生之產物的電泳分析結果。M:DNA分子量標準品;D:Expi293細胞基因體DNA;R:Expi293細胞總RNA;N:無模板控制組。 第9圖顯示,不同之經修飾之GAPDH引子組於反應溫度65℃之反轉錄恆溫環型核酸擴增法所產生之產物的電泳分析結果。M:DNA分子量標準品;D:Expi293細胞基因體DNA;R:Expi293細胞總RNA;N:無模板控制組。 第10A圖顯示,將添加有去活化之SARS-CoV-2病毒液之新型冠狀病毒陰性唾液檢體經熱處理後,以RdRp引子組對前述樣本進行反轉錄恆溫環型核酸擴增,並將所產生之產物進行電泳分析的結果。M:DNA分子量標準品;NTC:無模板控制組。 第10B圖顯示,將添加有去活化SARS-CoV-2病毒液之新型冠狀病毒陰性唾液檢體經熱處理後,以GAPDH-103-B3-I引子組對前述樣本進行反轉錄恆溫環型核酸擴增,並將所產生之產物進行電泳分析的結果。M:DNA分子量標準品;NTC:無模板控制組。 第10C圖顯示,將添加有去活化SARS-CoV-2病毒液之新型冠狀病毒陰性唾液檢體經熱處理後,分別以RdRp引子組與GAPDH-103-B3-I引子組對前述樣本進行反轉錄恆溫環型核酸擴增,並將分別獲得之產物混合後所獲得的混合物進行側流免疫分析的結果。NTC:無模板控制組;C:控制線;T1:第一測試線;T2:第二測試線。 第11A圖顯示,體外轉錄之RdRp RNA以帶有RNase H活性之反轉錄酵素於不同溫度下進行反轉錄反應,隨後再以重組 BstDNA聚合酶進行恆溫環型核酸擴增法(兩步驟反應)所產生之產物的電泳分析結果。M:DNA分子量標準品;NTC:無模板控制組。 第11B圖顯示,體外轉錄之RdRp RNA以帶有RNase H活性之反轉錄酵素於不同溫度下進行反轉錄反應,隨後再以重組 BstDNA聚合酶進行恆溫環型核酸擴增法(兩步驟反應)所產生之產物的側流免疫分析結果。NTC:無模板控制組;C:控制線;T2:第二測試線。 第12A圖顯示,體外轉錄之RdRp RNA以帶有RNase H活性之反轉錄酵素與重組 BstDNA聚合酶於65°C進行反轉錄恆溫環型核酸擴增法(一步驟反應)所產生之產物的電泳分析結果。M:DNA分子量標準品;NTC:無模板控制組。 第12B圖顯示,體外轉錄之RdRp RNA以帶有RNase H活性之反轉錄酵素與重組 BstDNA聚合酶於65°C進行反轉錄恆溫環型核酸擴增法(一步驟反應)所產生之產物的側流免疫分析結果。NTC:無模板控制組;C:控制線; T2:第二測試線。 第13圖顯示,將本揭露之引子組GAPDH-103與並非於本揭露之設計區段所設計之引子組GAPDH-5以及引子組GAPDH-90分別進行反轉錄恆溫環型核酸擴增法的電泳分析結果。M:DNA分子量標準品;293:Expi293細胞之總RNA;Sal:新型冠狀病毒陰性唾液之總RNA;NTC:無模板控制組。 Figures 1A, 1B, and 1C show the design and operating principle of the primer set for detecting GAPDH nucleic acid in the GAPDH nucleic acid detection kit disclosed herein, and the design and operating principle of the primer set for detecting GAPDH nucleic acid and the primer set for detecting target nucleic acid in the target nucleic acid detection kit. Figure 2A shows a schematic diagram of the mechanism of action of a lateral flow immunoassay strip in one embodiment of the present disclosure. Figure 2B shows a schematic diagram of the mechanism of action of a lateral flow immunoassay strip in another embodiment of the present disclosure. Figure 2C shows a schematic diagram of the mechanism of action of a lateral flow immunoassay strip in yet another embodiment of the present disclosure. Figure 3A shows the electrophoresis analysis of the total RNA of the saliva sample containing the synthetic SARS-CoV-2 RNA control group using the RdRp primer set (the 5' end of the forward inner primer is labeled with FAM, and the 5' end of the reverse inner primer is labeled with biotin) through the reverse transcription constant temperature circular nucleic acid amplification method (one-step reaction). Positive control group (PC): The product produced by mixing the synthetic SARS-CoV-2 RNA control group directly with the RdRp primer set and RT/ Bst mix and performing a reverse transcription constant temperature circular nucleic acid amplification method. No template control (NTC): The product generated by mixing 1x RNAsecure™ RNase Inactivation Reagent (used to replace the total RNA template) with the RdRp primer set and RT/ Bst mix to perform a reverse transcription constant temperature circular nucleic acid amplification method. M: DNA molecular weight standard; PC: positive control group; NTC: no template control group; 10 4 : The product generated by the total RNA of the saliva sample containing 10 4 copies/ml of the synthetic SARS-CoV-2 RNA control group using the RdRp primer set through a reverse transcription constant temperature circular nucleic acid amplification method. Figure 3B shows the electrophoresis analysis of the total RNA from the saliva sample containing the synthetic SARS-CoV-2 RNA control group using the GAPDH-103 primer set (the 5' end of the forward inner primer is labeled with DIG, and the 5' end of the reverse inner primer is labeled with biotin) through the reverse transcription constant temperature circular nucleic acid amplification method (one-step reaction). No template control group (NTC): 1x RNAsecure™ RNase Inactivation Reagent (used to replace the total RNA template) was mixed with GAPDH-103 and RT/ Bst mix to perform a reverse transcription constant temperature circular nucleic acid amplification method. M: DNA molecular weight standard; NTC: no template control; 10 4 : products generated by reverse transcription constant temperature circular nucleic acid amplification method using GAPDH-103 primer set from total RNA of saliva sample containing 10 4 copies/ml synthetic SARS-CoV-2 RNA control group. Figure 3C shows the lateral flow immunoassay results of the mixture obtained by mixing equal amounts of two products obtained by reverse transcription constant temperature circular nucleic acid amplification method (one-step reaction) using RdRp primer set and GAPDH-103 primer set from saliva sample containing synthetic SARS-CoV-2 RNA control group. Positive control group: the product produced by mixing the synthetic SARS-CoV-2 RNA control group directly with the RdRp primer set and RT/ Bst mix and performing a reverse transcription constant temperature circular nucleic acid amplification method. No template control group (NTC): the mixture obtained by mixing the no template control group in Figure 3A and the no template control group in Figure 3B in equal amounts. 10 4 copies/ml: the mixture obtained by mixing the two products obtained by performing a reverse transcription constant temperature circular nucleic acid amplification method with the RdRp primer set and the GAPDH-103 primer set in the saliva sample containing 10 4 copies/ml of the synthetic SARS-CoV-2 RNA control group in equal amounts; NTC: no template control group; C: control line; T1: first test line; T2: second test line. Figure 4 shows the electrophoresis analysis of the products produced by the reverse transcription constant temperature circular nucleic acid amplification method (two-step reaction) of the synthetic SARS-CoV-2 RNA control group using the RdRp primer set. M: DNA molecular weight standard; N: no template control group. Figure 5A shows the electrophoresis analysis of the products produced by the reverse transcription constant temperature circular nucleic acid amplification method using the RdRp primer set and the recombinant Bst DNA polymerase large fragment as the polymerase. M: DNA molecular weight standard; BEI: deactivated SARS-CoV-2 virus liquid; NTC: no template control group. Figure 5B shows the results of lateral flow immunoassay of the products produced by the reverse transcription constant temperature circular nucleic acid amplification method using the RdRp primer set and the recombinant Bst DNA polymerase large fragment as the polymerase for SARS-CoV-2 viral RNA. BEI virus: deactivated SARS-CoV-2 virus liquid; NTC: no template control group; C: control line; T2: second test line. Figure 6 shows the results of the reverse transcription constant temperature circular nucleic acid amplification directly performed on the negative saliva specimen of the new coronavirus with the deactivated SARS-CoV-2 virus liquid added after heat treatment with the RdRp primer set and the GAPDH-103 primer set, and the electrophoresis analysis of the products obtained. M: DNA molecular weight standard; PC: positive control group; NTC-RdRp: RdRp primer set no template control group; NTC-GAPDH: GAPDH-103 primer set no template control group. Figure 7 shows that after the novel coronavirus negative saliva sample was added with deactivated SARS-CoV-2 virus solution and heat-treated, the above sample was directly subjected to reverse transcription constant temperature cycle nucleic acid amplification using RdRp primer set and GAPDH-103 primer set, and the mixture obtained by mixing the products obtained was subjected to lateral flow immunoassay. NTC: no template control group; C: control line; T1: first test line; T2: second test line. Figure 8A shows the electrophoresis analysis results of the products generated by the inversion transcription constant temperature circular nucleic acid amplification method at a reaction temperature of 65°C using different GAPDH primer sets. M: DNA molecular weight standard; D: Expi293 cell genomic DNA; R: Expi293 cell total RNA; N: no template control group. Figure 8B shows the electrophoresis analysis results of the products generated by the inversion transcription constant temperature circular nucleic acid amplification method at a reaction temperature of 68°C using different GAPDH primer sets. M: DNA molecular weight standard; D: Expi293 cell genomic DNA; R: Expi293 cell total RNA; N: no template control group. Figure 8C shows the electrophoresis analysis results of the products produced by the inversion transcription constant temperature circular nucleic acid amplification method at a reaction temperature of 70°C using different GAPDH primer sets. M: DNA molecular weight standard; D: Expi293 cell genomic DNA; R: Expi293 cell total RNA; N: no template control group. Figure 9 shows the electrophoresis analysis results of the products produced by the inversion transcription constant temperature circular nucleic acid amplification method at a reaction temperature of 65°C using different modified GAPDH primer sets. M: DNA molecular weight standard; D: Expi293 cell genomic DNA; R: Expi293 cell total RNA; N: no template control group. Figure 10A shows the results of heat-treating a novel coronavirus-negative saliva sample supplemented with deactivated SARS-CoV-2 virus solution, performing reverse transcription thermostatic cyclic nucleic acid amplification on the sample using the RdRp primer set, and analyzing the resulting products by electrophoresis. M: DNA molecular weight standard; NTC: no template control group. Figure 10B shows the results of heat-treating a novel coronavirus-negative saliva sample supplemented with deactivated SARS-CoV-2 virus solution, performing reverse transcription thermostatic cyclic nucleic acid amplification on the sample using the GAPDH-103-B3-I primer set, and analyzing the resulting products by electrophoresis. M: DNA molecular weight standard; NTC: no template control group. Figure 10C shows the results of heat treatment of a novel coronavirus-negative saliva sample supplemented with deactivated SARS-CoV-2 virus solution, and then performing reverse transcription constant temperature circular nucleic acid amplification on the sample using the RdRp primer set and the GAPDH-103-B3-I primer set, respectively, and mixing the obtained products to obtain a mixture for lateral flow immunoassay. NTC: no template control group; C: control line; T1: first test line; T2: second test line. Figure 11A shows the results of electrophoresis analysis of the products produced by reverse transcription reaction of in vitro transcribed RdRp RNA with reverse transcriptase with RNase H activity at different temperatures, followed by constant temperature circular nucleic acid amplification (two-step reaction) using recombinant Bst DNA polymerase. M: DNA molecular weight standard; NTC: no template control group. Figure 11B shows the results of lateral flow immunoassay of the products produced by reverse transcription of in vitro transcribed RdRp RNA using reverse transcriptase with RNase H activity at different temperatures, followed by constant temperature circular nucleic acid amplification method (two-step reaction) using recombinant Bst DNA polymerase. NTC: no template control group; C: control line; T2: second test line. Figure 12A shows the results of electrophoresis analysis of the products produced by reverse transcription of in vitro transcribed RdRp RNA using reverse transcriptase with RNase H activity and recombinant Bst DNA polymerase at 65°C using constant temperature circular nucleic acid amplification method (one-step reaction). M: DNA molecular weight standard; NTC: no template control group. FIG. 12B shows the results of lateral flow immunoassay of the products produced by reverse transcription constant temperature circular nucleic acid amplification method (one-step reaction) of in vitro transcribed RdRp RNA using reverse transcriptase with RNase H activity and recombinant Bst DNA polymerase at 65°C. NTC: no template control group; C: control line; T2: second test line. FIG. 13 shows the results of electrophoresis analysis of reverse transcription constant temperature circular nucleic acid amplification method using primer set GAPDH-103 disclosed in the present invention and primer set GAPDH-5 and primer set GAPDH-90 which are not designed in the design section disclosed in the present invention. M: DNA molecular weight standard; 293: total RNA of Expi293 cells; Sal: total RNA of saliva negative for novel coronavirus; NTC: no template control group.
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