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TW200712204A - Method of processing and/or genome mapping of ditag sequences - Google Patents

Method of processing and/or genome mapping of ditag sequences

Info

Publication number
TW200712204A
TW200712204A TW095121094A TW95121094A TW200712204A TW 200712204 A TW200712204 A TW 200712204A TW 095121094 A TW095121094 A TW 095121094A TW 95121094 A TW95121094 A TW 95121094A TW 200712204 A TW200712204 A TW 200712204A
Authority
TW
Taiwan
Prior art keywords
ditag
processing
genome
mapping
sequence
Prior art date
Application number
TW095121094A
Other languages
English (en)
Inventor
Kuo-Ping Chiu
yi-jun Ruan
Chia-Lin Wei
Original Assignee
Agency Science Tech & Res
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Agency Science Tech & Res filed Critical Agency Science Tech & Res
Publication of TW200712204A publication Critical patent/TW200712204A/zh

Links

Classifications

    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B50/00—ICT programming tools or database systems specially adapted for bioinformatics
    • G16B50/10—Ontologies; Annotations
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B30/00—ICT specially adapted for sequence analysis involving nucleotides or amino acids
    • G16B30/10—Sequence alignment; Homology search
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B50/00—ICT programming tools or database systems specially adapted for bioinformatics
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B30/00—ICT specially adapted for sequence analysis involving nucleotides or amino acids

Landscapes

  • Physics & Mathematics (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Health & Medical Sciences (AREA)
  • Engineering & Computer Science (AREA)
  • Evolutionary Biology (AREA)
  • Spectroscopy & Molecular Physics (AREA)
  • Theoretical Computer Science (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Bioinformatics & Computational Biology (AREA)
  • Biotechnology (AREA)
  • Biophysics (AREA)
  • General Health & Medical Sciences (AREA)
  • Medical Informatics (AREA)
  • Bioethics (AREA)
  • Databases & Information Systems (AREA)
  • Chemical & Material Sciences (AREA)
  • Analytical Chemistry (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
  • Information Retrieval, Db Structures And Fs Structures Therefor (AREA)
  • Management, Administration, Business Operations System, And Electronic Commerce (AREA)
TW095121094A 2005-06-14 2006-06-13 Method of processing and/or genome mapping of ditag sequences TW200712204A (en)

Applications Claiming Priority (1)

Application Number Priority Date Filing Date Title
US11/151,591 US8428882B2 (en) 2005-06-14 2005-06-14 Method of processing and/or genome mapping of diTag sequences

Publications (1)

Publication Number Publication Date
TW200712204A true TW200712204A (en) 2007-04-01

Family

ID=37524501

Family Applications (1)

Application Number Title Priority Date Filing Date
TW095121094A TW200712204A (en) 2005-06-14 2006-06-13 Method of processing and/or genome mapping of ditag sequences

Country Status (10)

Country Link
US (1) US8428882B2 (zh)
EP (1) EP1899860A4 (zh)
JP (1) JP2008547080A (zh)
KR (1) KR20080026153A (zh)
CN (1) CN101233509A (zh)
AU (1) AU2006258264B2 (zh)
BR (1) BRPI0611624A2 (zh)
CA (1) CA2611951A1 (zh)
TW (1) TW200712204A (zh)
WO (1) WO2006135342A1 (zh)

Cited By (1)

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TWI571763B (zh) * 2014-12-01 2017-02-21 財團法人資訊工業策進會 次世代定序分析系統及其次世代定序分析方法

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US20090156431A1 (en) * 2007-12-12 2009-06-18 Si Lok Methods for Nucleic Acid Mapping and Identification of Fine Structural Variations in Nucleic Acids
CA2641851A1 (en) 2006-02-08 2007-08-16 Eric Hans Vermaas Method for sequencing a polynucleotide template
US8071296B2 (en) * 2006-03-13 2011-12-06 Agency For Science, Technology And Research Nucleic acid interaction analysis
US7754429B2 (en) 2006-10-06 2010-07-13 Illumina Cambridge Limited Method for pair-wise sequencing a plurity of target polynucleotides
US8263367B2 (en) * 2008-01-25 2012-09-11 Agency For Science, Technology And Research Nucleic acid interaction analysis
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WO2010104608A2 (en) * 2009-03-13 2010-09-16 Life Technologies Corporation Computer implemented method for indexing reference genome
SI2669387T1 (sl) 2009-08-25 2017-01-31 Illumina, Inc. Metode za izbiro in pomnoževanje polinukleotidov
KR20110027533A (ko) 2009-09-09 2011-03-16 엘지전자 주식회사 다중 안테나 시스템에서 제어정보 전송 방법 및 장치
EP2494052A4 (en) * 2009-10-30 2013-08-28 Univ California BACTERIAL METASTRUCTURE AND METHOD OF USE THEREOF
CN102789553B (zh) * 2012-07-23 2015-04-15 中国水产科学研究院 利用长转录组测序结果装配基因组的方法及装置
JP6198659B2 (ja) * 2014-04-03 2017-09-20 株式会社日立ハイテクノロジーズ 配列データ解析装置、ｄｎａ解析システムおよび配列データ解析方法
EP3347466B9 (en) 2015-09-08 2024-06-26 Cold Spring Harbor Laboratory Genetic copy number determination using high throughput multiplex sequencing of smashed nucleotides
US11031092B2 (en) 2017-11-01 2021-06-08 International Business Machines Corporation Taxonomic annotation of variable length metagenomic patterns
ES2965266T3 (es) 2020-03-09 2024-04-11 Illumina Inc Métodos para la secuenciación de polinucleótidos
CN113517026B (zh) * 2021-06-16 2022-08-19 苏州拉索生物芯片科技有限公司 应用于生物制品的标签序列的生成方法、系统、智能终端及计算机可读存储介质
US20240263229A1 (en) 2021-12-16 2024-08-08 Illumina, Inc. Hybrid clustering
EP4448797A1 (en) 2021-12-17 2024-10-23 Illumina, Inc. Orthogonal hybridization
US20240352515A1 (en) 2022-03-15 2024-10-24 Illumina, Inc. Methods of base calling nucleobases
CA3223653A1 (en) 2022-03-15 2023-09-21 Aathavan KARUNAKARAN Concurrent sequencing of forward and reverse complement strands on separate polynucleotides for methylation detection
WO2024061799A1 (en) 2022-09-19 2024-03-28 Illumina, Inc. Deformable polymers comprising immobilised primers
US20240102067A1 (en) 2022-09-26 2024-03-28 Illumina, Inc. Resynthesis Kits and Methods
US20240110221A1 (en) 2022-09-30 2024-04-04 Illumina, Inc. Methods of modulating clustering kinetics
US20240110234A1 (en) 2022-09-30 2024-04-04 Illumina, Inc. Amplification Compositions and Methods
US20240124914A1 (en) 2022-09-30 2024-04-18 Illumina, Inc. Thermophilic compositions for nucleic acid amplification
US20240124929A1 (en) 2022-09-30 2024-04-18 Illumina, Inc. Mesophilic compositions for nucleic acid amplification
WO2024256580A1 (en) 2023-06-14 2024-12-19 Illumina, Inc. Concurrent sequencing with spatially separated rings
WO2024256581A1 (en) 2023-06-14 2024-12-19 Illumina, Inc. Determination of modified cytosines
WO2025062002A1 (en) 2023-09-20 2025-03-27 Illumina, Inc. Concurrent sequencing using nick translation
WO2025062001A1 (en) 2023-09-20 2025-03-27 Illumina, Inc. Optimised nucleic acid sequencing
WO2025072683A1 (en) 2023-09-29 2025-04-03 Illumina, Inc. Solid supports and methods for strand invasion-based amplification
WO2025137479A1 (en) 2023-12-22 2025-06-26 Illumina, Inc. Reusable flow cells and methods of using them for nucleic acid sequencing

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Cited By (1)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
TWI571763B (zh) * 2014-12-01 2017-02-21 財團法人資訊工業策進會 次世代定序分析系統及其次世代定序分析方法

Also Published As

Publication number Publication date
AU2006258264B2 (en) 2012-03-08
WO2006135342A1 (en) 2006-12-21
EP1899860A4 (en) 2008-08-06
JP2008547080A (ja) 2008-12-25
KR20080026153A (ko) 2008-03-24
US8428882B2 (en) 2013-04-23
EP1899860A1 (en) 2008-03-19
US20060281097A1 (en) 2006-12-14
CA2611951A1 (en) 2006-12-21
BRPI0611624A2 (pt) 2010-09-21
CN101233509A (zh) 2008-07-30
AU2006258264A1 (en) 2006-12-21

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