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SG10201808952WA - Systems and methods for clonal replication and amplification of nucleic acid molecules for genomic and therapeutic applications - Google Patents

Systems and methods for clonal replication and amplification of nucleic acid molecules for genomic and therapeutic applications

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Publication number
SG10201808952WA
SG10201808952WA SG10201808952WA SG10201808952WA SG10201808952WA SG 10201808952W A SG10201808952W A SG 10201808952WA SG 10201808952W A SG10201808952W A SG 10201808952WA SG 10201808952W A SG10201808952W A SG 10201808952WA SG 10201808952W A SG10201808952W A SG 10201808952WA
Authority
SG
Singapore
Prior art keywords
nucleic acid
amplification
replication
genomic
detection
Prior art date
Application number
SG10201808952WA
Inventor
Michael Metzker
Christopher Weier
Original Assignee
Redvault Biosciences Lp
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Redvault Biosciences Lp filed Critical Redvault Biosciences Lp
Publication of SG10201808952WA publication Critical patent/SG10201808952WA/en

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    • C12Q1/00Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6844Nucleic acid amplification reactions
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    • C12Q1/00Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6844Nucleic acid amplification reactions
    • C12Q1/6853Nucleic acid amplification reactions using modified primers or templates
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    • C12Q1/00Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
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    • C12Q2531/00Reactions of nucleic acids characterised by
    • C12Q2531/10Reactions of nucleic acids characterised by the purpose being amplify/increase the copy number of target nucleic acid
    • C12Q2531/125Rolling circle

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  • General Health & Medical Sciences (AREA)
  • Chemical Kinetics & Catalysis (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
  • Apparatus Associated With Microorganisms And Enzymes (AREA)

Abstract

SYSTEMSAND METHODS FOR CLONAL REPLICATION AND AMPLIFICATION OF NUCLEIC ACID MOLECULES FOR GENOMIC AND THERAPEUTIC APPLICATIONS The present invention provides for methods, reagents, apparatuses, and systems for the replication or amplification of nucleic acid molecules from biological samples. In one embodiment of the invention, the nucleic molecules are isolated from the sample, and subjected to fragmenting and joining using ligating agents of one or more hairpin structures to each end of the fragmented nucleic molecules to form one or more dumbbell templates. The one or more dumbbell templates are contacted with at least one substantially complementary primer attached to a substrate, and subjected to rolling circle replication or rolling circle amplification. The resulting replicated dumbbell templates or amplified dumbbell templates are used in numerous genomic applications, including whole genome de novo sequencing; sequence variant detection, structural variant detection, determining the phase of molecular haplotypes, molecular counting for aneuploidy detection; targeted sequencing of gene panels, whole exome, or chromosomal regions for sequence variant detection, structural variant detection, determining the phase of molecular haplotypes and/or molecular counting for aneuploidy detection; study of nucleic acid - nucleic acid binding interactions, nucleic acid - protein binding interactions, and nucleic acid molecule expression arrays; and testing of the effects of small molecule inhibitors or activators or nucleic acid therapeutics. No suitable figure
SG10201808952WA 2014-04-11 2015-04-11 Systems and methods for clonal replication and amplification of nucleic acid molecules for genomic and therapeutic applications SG10201808952WA (en)

Applications Claiming Priority (1)

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US201461978823P 2014-04-11 2014-04-11

Publications (1)

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SG10201808952WA true SG10201808952WA (en) 2018-11-29

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SG10201808952WA SG10201808952WA (en) 2014-04-11 2015-04-11 Systems and methods for clonal replication and amplification of nucleic acid molecules for genomic and therapeutic applications
SG11201608486SA SG11201608486SA (en) 2014-04-11 2015-04-11 Systems and methods for clonal replication and amplification of nucleic acid molecules for genomic and therapeutic applications

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US (2) US20170067097A1 (en)
EP (1) EP3129505B1 (en)
JP (2) JP7058502B2 (en)
KR (1) KR102592367B1 (en)
CN (2) CN113528628A (en)
AU (1) AU2015243130B2 (en)
CA (1) CA2945358C (en)
DK (1) DK3129505T3 (en)
SG (2) SG10201808952WA (en)
WO (1) WO2015157747A1 (en)

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EP3714064B8 (en) * 2017-11-21 2024-10-30 4basebio UK Ltd Methods and kits for amplification of double stranded dna
CN111936635B (en) * 2018-03-02 2024-08-23 豪夫迈·罗氏有限公司 Generation of single-stranded circular DNA templates for single-molecule sequencing
KR102131494B1 (en) * 2018-04-17 2020-07-07 건국대학교 산학협력단 Detection of Target Nucleic Acid Sequences by PCR-coupled Rolling Circle Amplification
CN109055488B (en) * 2018-08-17 2021-11-02 中山康源基因技术科技有限公司 Method for preparing long probe by using annular single-chain probe and application of long probe in gene chip production
EP3650559B1 (en) 2018-11-08 2022-06-29 Siemens Healthcare GmbH Direct rna nanopore sequencing with help of a stem-loop polynucleotide
SG11202105957YA (en) * 2018-12-05 2021-07-29 Egi Tech Shen Zhen Co Limited Rolling circle amplification method, method for preparing sequencing library, and dna nanosphere prepared therefrom
CN111378750A (en) * 2018-12-29 2020-07-07 北京福安华生物科技有限公司 Artificial mimic nucleic acid molecular beacon and kit for detecting rs885004 site polymorphism of SLC28A3 gene
GB201911421D0 (en) * 2019-08-09 2019-09-25 Dnae Diagnostics Ltd Methods of multiplexed isothermal amplification of nucleic acid sequences
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CN111139289A (en) * 2019-12-25 2020-05-12 中国海洋大学 Constant temperature rolling circle amplification method based on dumbbell circle template
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EP4153606A4 (en) 2020-07-13 2024-10-02 Singular Genomics Systems, Inc. Methods of sequencing complementary polynucleotides
WO2022141061A1 (en) * 2020-12-29 2022-07-07 深圳华大智造科技股份有限公司 Method for rapidly constructing cyclized library and ring-forming linker
CA3233230A1 (en) * 2021-09-27 2023-03-30 Jin Huh Synthetic production of circular dna vectors
IL322624A (en) * 2023-02-23 2025-10-01 Centre For Novostics Single-molecule strand-specific end modalities
FI20245658A1 (en) * 2024-05-23 2025-11-24 Genomill Health Oy Method of amplification and storage of circular nucleic acid molecules

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Also Published As

Publication number Publication date
CN106460065A (en) 2017-02-22
WO2015157747A9 (en) 2016-08-25
JP7100680B2 (en) 2022-07-13
KR102592367B1 (en) 2023-10-26
CA2945358A1 (en) 2015-10-15
AU2015243130B2 (en) 2021-08-26
AU2015243130A1 (en) 2016-11-03
EP3129505A1 (en) 2017-02-15
JP2017512071A (en) 2017-05-18
US20240368682A1 (en) 2024-11-07
US20170067097A1 (en) 2017-03-09
EP3129505A4 (en) 2017-12-06
CN113528628A (en) 2021-10-22
CA2945358C (en) 2022-12-06
KR20160138579A (en) 2016-12-05
EP3129505B1 (en) 2021-06-30
JP2020188774A (en) 2020-11-26
SG11201608486SA (en) 2016-11-29
JP7058502B2 (en) 2022-04-22
DK3129505T3 (en) 2021-10-04
WO2015157747A1 (en) 2015-10-15

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