RU2011127196A - Лечение связанных с геном-супрессором опухолей заболеваний посредством ингибирования природного транскрипта в антисмысловой ориентации относительно этого гена - Google Patents
Лечение связанных с геном-супрессором опухолей заболеваний посредством ингибирования природного транскрипта в антисмысловой ориентации относительно этого гена Download PDFInfo
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- RU2011127196A RU2011127196A RU2011127196/10A RU2011127196A RU2011127196A RU 2011127196 A RU2011127196 A RU 2011127196A RU 2011127196/10 A RU2011127196/10 A RU 2011127196/10A RU 2011127196 A RU2011127196 A RU 2011127196A RU 2011127196 A RU2011127196 A RU 2011127196A
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- tumor suppressor
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Abstract
1. Способ модулирования функции и/или экспрессии полинуклеотида гена-супрессора опухолей в клетках или тканях пациента in vivo или in vitro, включающий контактирование указанных клеток или тканей с по меньшей мере одним антисмысловым олигонуклеотидом длиной от 5 до 30 нуклеотидов, причем указанный по меньшей мере один олигонуклеотид идентичен по последовательности по меньшей мере на 50% обратному комплементу полинуклеотида, включающего от 5 до 30 нуклеотидов в пределах нуклеотидов 1-1675 SEQ ID NO: 4, или нуклеотидов 1-518 SEQ ID NO: 5, или нуклеотидов 1-759 SEQ ID NO: 6, или нуклеотидов 1-25892 SEQ ID NO: 6a, или нуклеотидов 1-279 SEQ ID NO: 6b, или нуклеотидов 1-1982 SEQ ID NO: 7, или нуклеотидов 1-789 SEQ ID NO: 8, или нуклеотидов 1-467 SEQ ID NO: 9 (фиг. 5), посредством чего осуществляется модулирование функции и/или экспрессии полинуклеотида гена-супрессора опухолей в клетках или тканях пациента in vivo или in vitro.2. Способ модулирования функции и/или экспрессии полинуклеотида гена-супрессора опухолей в клетках или тканях пациента in vivo или in vitro, включающий контактирование указанных клеток или тканей с по меньшей мере одним антисмысловым олигонуклеотидом длиной от 5 до 30 нуклеотидов, причем указанный по меньшей мере один олигонуклеотид идентичен по последовательности по меньшей мере на 50% обратному комплементу природной антисмысловой последовательности полинуклеотида гена-супрессора опухолей; посредством чего осуществляется модулирование функции и/или экспрессии полинуклеотида гена-супрессора опухолей в клетках или тканях пациента in vivo или in vitro.3. Способ модулирования функции и/или экспрессии полинуклеотида гена-супрессора опухолей в клетках или тканях пациента in vivo или in vitro, вкл�
Claims (43)
1. Способ модулирования функции и/или экспрессии полинуклеотида гена-супрессора опухолей в клетках или тканях пациента in vivo или in vitro, включающий контактирование указанных клеток или тканей с по меньшей мере одним антисмысловым олигонуклеотидом длиной от 5 до 30 нуклеотидов, причем указанный по меньшей мере один олигонуклеотид идентичен по последовательности по меньшей мере на 50% обратному комплементу полинуклеотида, включающего от 5 до 30 нуклеотидов в пределах нуклеотидов 1-1675 SEQ ID NO: 4, или нуклеотидов 1-518 SEQ ID NO: 5, или нуклеотидов 1-759 SEQ ID NO: 6, или нуклеотидов 1-25892 SEQ ID NO: 6a, или нуклеотидов 1-279 SEQ ID NO: 6b, или нуклеотидов 1-1982 SEQ ID NO: 7, или нуклеотидов 1-789 SEQ ID NO: 8, или нуклеотидов 1-467 SEQ ID NO: 9 (фиг. 5), посредством чего осуществляется модулирование функции и/или экспрессии полинуклеотида гена-супрессора опухолей в клетках или тканях пациента in vivo или in vitro.
2. Способ модулирования функции и/или экспрессии полинуклеотида гена-супрессора опухолей в клетках или тканях пациента in vivo или in vitro, включающий контактирование указанных клеток или тканей с по меньшей мере одним антисмысловым олигонуклеотидом длиной от 5 до 30 нуклеотидов, причем указанный по меньшей мере один олигонуклеотид идентичен по последовательности по меньшей мере на 50% обратному комплементу природной антисмысловой последовательности полинуклеотида гена-супрессора опухолей; посредством чего осуществляется модулирование функции и/или экспрессии полинуклеотида гена-супрессора опухолей в клетках или тканях пациента in vivo или in vitro.
3. Способ модулирования функции и/или экспрессии полинуклеотида гена-супрессора опухолей в клетках или тканях пациента in vivo или in vitro, включающий контактирование указанных клеток или тканей с антисмысловым олигонуклеотидом длиной от 5 до 30 нуклеотидов, причем указанный олигонуклеотид идентичен по последовательности по меньшей мере на 50% антисмысловому олигонуклеотиду, который связывается с полинуклеотидом гена-супрессора опухолей; посредством чего осуществляется модулирование функции и/или экспрессии полинуклеотида гена-супрессора опухолей в клетках или тканях пациента in vivo или in vitro.
4. Способ модулирования функции и/или экспрессии полинуклеотида гена-супрессора опухолей в клетках или тканях пациента in vivo или in vitro, включающий контактирование указанных клеток или тканей с по меньшей мере одним антисмысловым олигонуклеотидом, мишенью которого является участок природной антисмысловой последовательности полинуклеотида гена-супрессора опухолей; посредством чего осуществляется модулирование функции и/или экспрессии полинуклеотида гена-супрессора опухолей в клетках или тканях пациента in vivo или in vitro.
5. Способ по п.4, в котором функция и/или экспрессия полинуклеотида гена-супрессора опухолей увеличивается in vivo или in vitro относительно контроля.
6. Способ по 4, в котором мишенью по меньшей мере одного антисмыслового олигонуклеотида является природная антисмысловая последовательность полинуклеотида гена-супрессора опухолей.
7. Способ по п.4, в котором мишенью по меньшей мере одного антисмыслового олигонуклеотида является последовательность нуклеиновой кислоты, включающая кодирующие и/или не кодирующие нуклеотидные последовательности полинуклеотида гена-супрессора опухолей.
8. Способ по п.4, в котором мишенью по меньшей мере одного антисмыслового олигонуклеотида являются перекрывающиеся и/или не перекрывающиеся последовательности полинуклеотида гена-супрессора опухолей.
9. Способ по п.4, в котором по меньшей мере один антисмысловый олигонуклеотид включает одну или несколько модификаций, выбираемых из по меньшей мере одной модифицированной молекулы сахара, по меньшей мере одной модифицированной межнуклеозидной связи, по меньшей мере одного модифицированного нуклеотида и их комбинаций.
10. Способ по п.9, в котором одна или несколько модификаций включают по меньшей мере одну модифицированную молекулу сахара, выбираемую из 2'-O-метоксиэтил-модифицированной молекулы сахара, 2'-метокси-модифицированной молекулы сахара, 2'-O-алкил-модифицированной молекулы сахара, модифицированной молекулы в виде бициклического сахара и их комбинаций.
11. Способ по п.9, в котором одна или несколько модификаций включают по меньшей мере одну модифицированную межнуклеозидную связь, выбираемую из фосфоротиоата, 2'-O-метоксиэтила (MOE), 2'-фтора, алкилфосфоната, фосфородитиоата, алкилфосфонотиоата, фосфорамидата, карбамата, карбоната, триэфира фосфорной кислоты, ацетамидата, карбоксиметилового эфира и их комбинаций.
12. Способ по п.9, в котором одна или несколько модификаций включают по меньшей мере один модифицированный нуклеотид, выбираемый из пептидонуклеиновой кислоты (ПНК), замкнутой нуклеиновой кислоты (LNA), арабинонуклеиновой кислоты (FANA), их аналога, производного и комбинаций.
13. Способ по п.1, в котором по меньшей мере один олигонуклеотид включает по меньшей мере одну из последовательностей олигонуклеотидов, представленных как SEQ ID NO: 10-30.
14. Способ модулирования функции и/или экспрессии гена-супрессора опухолей в клетках или тканях млекопитающих in vivo или in vitro, включающий контактирование указанных клеток или тканей с по меньшей мере одним олигонуклеотидом короткой интерферирующей РНК (киРНК) длиной от 5 до 30 нуклеотидов, являющейся специфичной в отношении антисмыслового полинуклеотида полинуклеотида гена-супрессора опухолей, причем указанный олигонуклеотид идентичен по последовательности по меньшей мере на 50% комплементарной последовательности из по меньшей мере приблизительно пяти последовательных нуклеиновых кислот антисмысловой и/или смысловой молекулы нуклеиновой кислоты полинуклеотида гена-супрессора опухолей; и модулирование функции и/или экспрессии гена-супрессора опухолей в клетках или тканях млекопитающих in vivo или in vitro.
15. Способ по п.14, в котором указанный олигонуклеотид идентичен по последовательности по меньшей мере на 80% комплементарной последовательности из по меньшей мере приблизительно пяти последовательных нуклеиновых кислот антисмысловой и/или смысловой молекулы нуклеиновой кислоты полинуклеотида гена-супрессора опухолей.
16. Способ модулирования функции и/или экспрессии гена-супрессора опухолей в клетках или тканях млекопитающего in vivo или in vitro, включающий контактирование указанных клеток или тканей с по меньшей мере одним антисмысловым олигонуклеотидом длиной от 5 до 30 нуклеотидов, специфичным в отношении некодирующей и/или кодирующей последовательностей смысловой и/или природной антисмысловой цепи полинуклеотида гена-супрессора опухолей, причем указанный по меньшей мере один антисмысловой олигонуклеотид идентичен по последовательности по меньшей мере на 50% по меньшей мере одной последовательности нуклеиновой кислоты, представленной как SEQ ID NO: 1, 1a, 1b, 2, 2a, 2b, 3, 3a, 4, 5, 6, 6a, 6b, 7, 8 и 9; и модулирование функции и/или экспрессии гена-супрессора опухолей в клетках или тканях млекопитающего in vivo или in vitro.
17. Синтетический, модифицированный олигонуклеотид, включающий по меньшей мере одну модификацию, причем по меньшей мере одну модификацию выбирают из по меньшей мере одной модифицированной молекулы сахара, по меньшей мере одной модифицированной межнуклеотидной связи, по меньшей мере одного модифицированного нуклеотида и их комбинаций; и дополнительно указанный олигонуклеотид является антисмысловым соединением, которое гибридизуется с полинуклеотидом гена-супрессора опухолей и модулирует его экспрессию и/или функцию in vivo или in vitro по сравнению с нормальным контролем.
18. Олигонуклеотид по п.17, в котором по меньшей мере одна модификация включает межнуклеотидную связь, выбираемую из группы, состоящей из фосфоротиоата, алкилфосфоната, фосфородитиоата, алкилфосфонотиоата, фосфорамидата, карбамата, карбоната, триэфира фосфорной кислоты, ацетамидата, карбоксиметилового эфира и их комбинаций.
19. Олигонуклеотид по п.17, который включает по меньшей мере одну фосфоротиоатную межнуклеотидную связь.
20. Олигонуклеотид по п.17, который включает остов из фосфоротиоатных межнуклеотидных связей.
21. Олигонуклеотид по п.17, который включает по меньшей мере один модифицированный нуклеотид, выбираемый из пептидонуклеиновой кислоты, замкнутой нуклеиновой кислоты (LNA), их аналога, производного и комбинаций.
22. Олигонуклеотид по п.17, который включает множество модификаций, причем указанные модификации включают межнуклеотидные связи, выбираемые из фосфоротиоата, алкилфосфоната, фосфородитиоата, алкилфосфонотиоата, фосфорамидата, карбамата, карбоната, триэфира фосфорной кислоты, ацетамидата, карбоксиметилового эфира и их комбинации.
23. Олигонуклеотид по п.17, который включает множество модификаций, причем указанные модификации включают модифицированные нуклеотиды, выбираемые из пептидонуклеиновых кислот, замкнутых нуклеиновых кислот (LNA), их аналогов, производных и комбинаций.
24. Олигонуклеотид по п.17, который включает по меньшей мере одну модифицированную молекулу сахара, выбираемую из 2'-O-метоксиэтил-модифицированной молекулы сахара, 2'-метокси-модифицированной молекулы сахара, 2'-O-алкил-модифицированной молекулы сахара, модифицированной молекулы в виде бициклического сахара и их комбинации.
25. Олигонуклеотид по п.17, который включает множество модификаций, причем указанные модификации включают модифицированные молекулы сахара, выбираемые из 2'-O-метоксиэтил-модифицированной молекулы сахара, 2'-метокси-модифицированной молекулы сахара, 2'-O-алкил-модифицированной молекулы сахара, модифицированной молекулы в виде бициклического сахара и их комбинации.
26. Олигонуклеотид по п.17, длина которого составляет по меньшей мере приблизительно 5-30 нуклеотидов и который гибридизуется с антисмысловой и/или смысловой цепью полинуклеотида гена-супрессора опухолей, причем указанный олигонуклеотид идентичен по последовательности по меньшей мере приблизительно на 20% комплементарной последовательности из по меньшей мере приблизительно пяти последовательных нуклеиновых кислот антисмысловой и/или смысловой кодирующей и/или некодирующей последовательностей нуклеиновых кислот полинуклеотида гена-супрессора опухолей.
27. Олигонуклеотид по п.17, который идентичен по последовательности по меньшей мере приблизительно на 80% комплементарной последовательности из по меньшей мере приблизительно пяти последовательных нуклеиновых кислот антисмысловой и/или смысловой кодирующей и/или некодирующей последовательности нуклеиновых кислот полинуклеотида гена-супрессора опухолей.
28. Олигонуклеотид по п.17, который гибридизуется с по меньшей мере одним полинуклеотидом гена-супрессора опухолей и модулирует его экспрессию и/или функцию in vivo или in vitro, по сравнению с нормальным контролем.
29. Олигонуклеотид по п.17, который включает одну из последовательностей, представленных как SEQ ID NO: 10-30.
30. Композиция, включающая один или несколько олигонуклеотидов, специфичных в отношении одного или нескольких полинуклеотидов гена-супрессора опухолей, причем указанные полинуклеотиды включают антисмысловые последовательности, комплементарные последовательности, аллели, гомологи, изоформы, варианты, производные, мутанты, фрагменты или их комбинации.
31. Композиция по п.30, в которой олигонуклеотиды идентичны по последовательности по меньшей мере приблизительно на 40% по сравнению с любой из нуклеотидных последовательностей, представленных как SEQ ID NO: 10-30.
32. Композиция по п.30, в которой один или несколько олигонуклеотидов включают любую из нуклеотидных последовательностей, представленных как SEQ ID NO: 10-30.
33. Композиция по п.32, в которой олигонуклеотиды, представленные как SEQ ID NO: 10-30, включают одну или несколько модификаций или замен нуклеотидов.
34. Композиция по п.33, в которой одну или несколько модификаций выбирают из фосфоротиоата, метилфосфоната, пептидонуклеиновой кислоты, молекул замкнутых нуклеиновых кислот (LNA) и их комбинаций.
35. Способ профилактики или лечения заболевания, связанного с по меньшей мере одним полинуклеотидом гена-супрессора опухолей и/или по меньшей мере одним кодируемым им продуктом, включающий введение пациенту терапевтически эффективной дозы по меньшей мере одного антисмыслового олигонуклеотида, который связывается с природной антисмысловой последовательностью указанного по меньшей мере одного полинуклеотида гена-супрессора опухолей и модулирует экспрессию указанного по меньшей мере одного полинуклеотида гена-супрессора опухолей; посредством чего осуществляется предупреждение или лечение заболевания, связанного с по меньшей мере одним полинуклеотидом гена-супрессора опухолей и/или по меньшей мере одним кодируемым им продуктом.
36. Способ по п.35, в котором заболевание, связанное с по меньшей мере одним полинуклеотидом гена-супрессора опухолей, выбирают из заболевания, связанного со сниженным или повышенным апоптозом, старения тканей/клеток, рака (в том числе злокачественных опухолей, приведенных в таблице 1), аутоиммунного заболевания, болезни иммунодефицита, включающей СПИД, физиологического старения, нейродегенеративного заболевания или нарушения (например, болезни Альцгеймера, атаксии-телеангиэктазии, болезни Паркинсона, бокового амиотрофического склероза, болезни Хантингтона и т.д.), гиперпластического заболевания (например, келоида), ревматоидного артрита, коронарной болезни сердца, ишемической гибели клеток, лимфопролиферативного нарушения, атеросклероза, остеопороза, миелодиспластического синдрома, вызванного токсином заболевания, вирусной инфекции, заживления раны, болезни Каудена (CD), болезни Лермитта-Дуклоса (LDD), синдрома Баннайана-Зонана (BZS, также известного как синдром Баннайана-Райли-Рувалкаба, синдром Рувалкаба-Мири-Смита и синдром Райли-Смита), трансплантации, связанного с апоптозом заболевания или нарушения, болезни обмена веществ или метаболического состояния (например, диабета), болезней или нарушений почки, инфаркта миокарда/сердечной недостаточности, ишемии, сепсиса, воспалительного заболевания, при котором преобладают конкретные гемопоэтические клетки, пролиферативного заболевания или заболевания или нарушения, в случае которого примером терапии является лечение воспалительного заболевания через увеличение апоптоза.
37. Способ идентификации и отбора по меньшей мере одного олигонуклеотида для in vivo введения, включающий отбор полинуклеотида-мишени, связанного с болезненным состоянием; идентификацию по меньшей мере одного олигонуклеотида, включающего по меньшей мере пять последовательных нуклеотидов, которые комплементарны выбранному полинуклеотиду-мишени или находятся в антисмысловой ориентации относительно него; измерение температурной точки плавления гибрида антисмыслового олигонуклеотида и полинуклеотида-мишени в жестких условиях гибридизации и отбор по меньшей мере одного олигонуклеотида для in vivo введения на основе полученной информации.
38. Способ по п.2, в котором ген-супрессор опухолей кодирует один из белков-супрессоров опухолей, перечисленных в таблице 1.
39. Способ по п.38, в котором ген-супрессор опухолей кодирует p53, p73 или PTEN.
40. Способ по п.4, в котором ген-супрессор опухолей кодирует один из белков-супрессоров опухолей, перечисленных в таблице 1.
41. Способ по п.40, в котором ген-супрессор опухолей кодирует p53, p73 или PTEN.
42. Способ по п.35, в котором ген-супрессор опухолей кодирует один из белков-супрессоров опухолей, перечисленных в таблице 1.
43. Способ по п.42, в котором ген-супрессор опухолей кодирует p53, p73 или PTEN.
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2009
- 2009-12-03 KR KR1020177021540A patent/KR101866152B1/ko not_active Expired - Fee Related
- 2009-12-03 CN CN201710373876.4A patent/CN107338251A/zh active Pending
- 2009-12-03 CA CA2745811A patent/CA2745811C/en active Active
- 2009-12-03 ES ES09831149.1T patent/ES2637063T3/es active Active
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