PL157777B1 - Method of obtaining oligonucleotides - Google Patents
Method of obtaining oligonucleotidesInfo
- Publication number
- PL157777B1 PL157777B1 PL27372388A PL27372388A PL157777B1 PL 157777 B1 PL157777 B1 PL 157777B1 PL 27372388 A PL27372388 A PL 27372388A PL 27372388 A PL27372388 A PL 27372388A PL 157777 B1 PL157777 B1 PL 157777B1
- Authority
- PL
- Poland
- Prior art keywords
- group
- formula
- product
- solid support
- hours
- Prior art date
Links
- 108091034117 Oligonucleotide Proteins 0.000 title claims abstract description 31
- JLCPHMBAVCMARE-UHFFFAOYSA-N [3-[[3-[[3-[[3-[[3-[[3-[[3-[[3-[[3-[[3-[[3-[[5-(2-amino-6-oxo-1H-purin-9-yl)-3-[[3-[[3-[[3-[[3-[[3-[[5-(2-amino-6-oxo-1H-purin-9-yl)-3-[[5-(2-amino-6-oxo-1H-purin-9-yl)-3-hydroxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(6-aminopurin-9-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(6-aminopurin-9-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(6-aminopurin-9-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(6-aminopurin-9-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(4-amino-2-oxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(6-aminopurin-9-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(6-aminopurin-9-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(4-amino-2-oxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(4-amino-2-oxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(4-amino-2-oxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(6-aminopurin-9-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(4-amino-2-oxopyrimidin-1-yl)oxolan-2-yl]methyl [5-(6-aminopurin-9-yl)-2-(hydroxymethyl)oxolan-3-yl] hydrogen phosphate Polymers Cc1cn(C2CC(OP(O)(=O)OCC3OC(CC3OP(O)(=O)OCC3OC(CC3O)n3cnc4c3nc(N)[nH]c4=O)n3cnc4c3nc(N)[nH]c4=O)C(COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3CO)n3cnc4c(N)ncnc34)n3ccc(N)nc3=O)n3cnc4c(N)ncnc34)n3ccc(N)nc3=O)n3ccc(N)nc3=O)n3ccc(N)nc3=O)n3cnc4c(N)ncnc34)n3cnc4c(N)ncnc34)n3cc(C)c(=O)[nH]c3=O)n3cc(C)c(=O)[nH]c3=O)n3ccc(N)nc3=O)n3cc(C)c(=O)[nH]c3=O)n3cnc4c3nc(N)[nH]c4=O)n3cnc4c(N)ncnc34)n3cnc4c(N)ncnc34)n3cnc4c(N)ncnc34)n3cnc4c(N)ncnc34)O2)c(=O)[nH]c1=O JLCPHMBAVCMARE-UHFFFAOYSA-N 0.000 title claims abstract description 18
- 238000000034 method Methods 0.000 title claims abstract 26
- 239000007787 solid Substances 0.000 claims abstract description 29
- UYTPUPDQBNUYGX-UHFFFAOYSA-N guanine Chemical compound O=C1NC(N)=NC2=C1N=CN2 UYTPUPDQBNUYGX-UHFFFAOYSA-N 0.000 claims abstract description 26
- 239000002777 nucleoside Substances 0.000 claims abstract description 21
- RWQNBRDOKXIBIV-UHFFFAOYSA-N thymine Chemical compound CC1=CNC(=O)NC1=O RWQNBRDOKXIBIV-UHFFFAOYSA-N 0.000 claims abstract description 20
- OPTASPLRGRRNAP-UHFFFAOYSA-N cytosine Chemical compound NC=1C=CNC(=O)N=1 OPTASPLRGRRNAP-UHFFFAOYSA-N 0.000 claims abstract description 18
- NYHBQMYGNKIUIF-UUOKFMHZSA-N Guanosine Chemical compound C1=NC=2C(=O)NC(N)=NC=2N1[C@@H]1O[C@H](CO)[C@@H](O)[C@H]1O NYHBQMYGNKIUIF-UUOKFMHZSA-N 0.000 claims abstract description 16
- 229930024421 Adenine Natural products 0.000 claims abstract description 13
- GFFGJBXGBJISGV-UHFFFAOYSA-N Adenine Chemical compound NC1=NC=NC2=C1N=CN2 GFFGJBXGBJISGV-UHFFFAOYSA-N 0.000 claims abstract description 13
- 229960000643 adenine Drugs 0.000 claims abstract description 13
- 125000001301 ethoxy group Chemical group [H]C([H])([H])C([H])([H])O* 0.000 claims abstract description 11
- 239000007822 coupling agent Substances 0.000 claims abstract description 10
- 239000002773 nucleotide Substances 0.000 claims abstract description 10
- 125000003729 nucleotide group Chemical group 0.000 claims abstract description 10
- 238000009833 condensation Methods 0.000 claims abstract description 9
- 230000005494 condensation Effects 0.000 claims abstract description 9
- 229940029575 guanosine Drugs 0.000 claims abstract description 9
- 239000001257 hydrogen Substances 0.000 claims abstract description 9
- 229910052739 hydrogen Inorganic materials 0.000 claims abstract description 9
- MIKUYHXYGGJMLM-GIMIYPNGSA-N Crotonoside Natural products C1=NC2=C(N)NC(=O)N=C2N1[C@H]1O[C@@H](CO)[C@H](O)[C@@H]1O MIKUYHXYGGJMLM-GIMIYPNGSA-N 0.000 claims abstract description 8
- NYHBQMYGNKIUIF-UHFFFAOYSA-N D-guanosine Natural products C1=2NC(N)=NC(=O)C=2N=CN1C1OC(CO)C(O)C1O NYHBQMYGNKIUIF-UHFFFAOYSA-N 0.000 claims abstract description 8
- UHDGCWIWMRVCDJ-ZAKLUEHWSA-N cytidine Chemical compound O=C1N=C(N)C=CN1[C@H]1[C@H](O)[C@@H](O)[C@H](CO)O1 UHDGCWIWMRVCDJ-ZAKLUEHWSA-N 0.000 claims abstract description 8
- 125000002887 hydroxy group Chemical group [H]O* 0.000 claims abstract description 8
- UHDGCWIWMRVCDJ-UHFFFAOYSA-N 1-beta-D-Xylofuranosyl-NH-Cytosine Natural products O=C1N=C(N)C=CN1C1C(O)C(O)C(CO)O1 UHDGCWIWMRVCDJ-UHFFFAOYSA-N 0.000 claims abstract description 7
- UHDGCWIWMRVCDJ-PSQAKQOGSA-N Cytidine Natural products O=C1N=C(N)C=CN1[C@@H]1[C@@H](O)[C@@H](O)[C@H](CO)O1 UHDGCWIWMRVCDJ-PSQAKQOGSA-N 0.000 claims abstract description 7
- 238000005903 acid hydrolysis reaction Methods 0.000 claims abstract description 6
- 125000004435 hydrogen atom Chemical class [H]* 0.000 claims abstract description 6
- 125000003835 nucleoside group Chemical group 0.000 claims abstract description 6
- 229910052760 oxygen Inorganic materials 0.000 claims abstract description 6
- 229940113082 thymine Drugs 0.000 claims abstract description 6
- UFHFLCQGNIYNRP-UHFFFAOYSA-N Hydrogen Chemical compound [H][H] UFHFLCQGNIYNRP-UHFFFAOYSA-N 0.000 claims abstract description 5
- IQFYYKKMVGJFEH-XLPZGREQSA-N Thymidine Chemical compound O=C1NC(=O)C(C)=CN1[C@@H]1O[C@H](CO)[C@@H](O)C1 IQFYYKKMVGJFEH-XLPZGREQSA-N 0.000 claims abstract description 5
- QVGXLLKOCUKJST-UHFFFAOYSA-N atomic oxygen Chemical compound [O] QVGXLLKOCUKJST-UHFFFAOYSA-N 0.000 claims abstract description 5
- 230000000903 blocking effect Effects 0.000 claims abstract description 5
- 229940104302 cytosine Drugs 0.000 claims abstract description 5
- 230000003647 oxidation Effects 0.000 claims abstract description 5
- 238000007254 oxidation reaction Methods 0.000 claims abstract description 5
- 239000001301 oxygen Substances 0.000 claims abstract description 5
- 150000003838 adenosines Chemical class 0.000 claims abstract description 4
- 229940104230 thymidine Drugs 0.000 claims abstract 3
- DWRXFEITVBNRMK-UHFFFAOYSA-N Beta-D-1-Arabinofuranosylthymine Natural products O=C1NC(=O)C(C)=CN1C1C(O)C(O)C(CO)O1 DWRXFEITVBNRMK-UHFFFAOYSA-N 0.000 claims abstract 2
- IQFYYKKMVGJFEH-UHFFFAOYSA-N beta-L-thymidine Natural products O=C1NC(=O)C(C)=CN1C1OC(CO)C(O)C1 IQFYYKKMVGJFEH-UHFFFAOYSA-N 0.000 claims abstract 2
- -1 dimethoxytriphenylmethyl Chemical group 0.000 claims description 27
- 150000003833 nucleoside derivatives Chemical class 0.000 claims description 17
- 238000003776 cleavage reaction Methods 0.000 claims description 10
- 230000007017 scission Effects 0.000 claims description 10
- OIRDTQYFTABQOQ-KQYNXXCUSA-N adenosine Chemical compound C1=NC=2C(N)=NC=NC=2N1[C@@H]1O[C@H](CO)[C@@H](O)[C@H]1O OIRDTQYFTABQOQ-KQYNXXCUSA-N 0.000 claims description 6
- 238000004519 manufacturing process Methods 0.000 claims description 5
- 125000004573 morpholin-4-yl group Chemical group N1(CCOCC1)* 0.000 claims description 4
- 239000002126 C01EB10 - Adenosine Substances 0.000 claims description 3
- 229960005305 adenosine Drugs 0.000 claims description 3
- 239000000047 product Substances 0.000 claims 32
- YMWUJEATGCHHMB-UHFFFAOYSA-N Dichloromethane Chemical compound ClCCl YMWUJEATGCHHMB-UHFFFAOYSA-N 0.000 claims 20
- WEVYAHXRMPXWCK-UHFFFAOYSA-N Acetonitrile Chemical compound CC#N WEVYAHXRMPXWCK-UHFFFAOYSA-N 0.000 claims 19
- OKKJLVBELUTLKV-UHFFFAOYSA-N Methanol Chemical compound OC OKKJLVBELUTLKV-UHFFFAOYSA-N 0.000 claims 17
- 150000001875 compounds Chemical class 0.000 claims 16
- UHOVQNZJYSORNB-UHFFFAOYSA-N Benzene Chemical compound C1=CC=CC=C1 UHOVQNZJYSORNB-UHFFFAOYSA-N 0.000 claims 15
- ZMANZCXQSJIPKH-UHFFFAOYSA-N Triethylamine Chemical compound CCN(CC)CC ZMANZCXQSJIPKH-UHFFFAOYSA-N 0.000 claims 15
- JUJWROOIHBZHMG-UHFFFAOYSA-N Pyridine Chemical compound C1=CC=NC=C1 JUJWROOIHBZHMG-UHFFFAOYSA-N 0.000 claims 14
- HEDRZPFGACZZDS-UHFFFAOYSA-N Chloroform Chemical compound ClC(Cl)Cl HEDRZPFGACZZDS-UHFFFAOYSA-N 0.000 claims 10
- 125000003652 trifluoroethoxy group Chemical group FC(CO*)(F)F 0.000 claims 10
- XKRFYHLGVUSROY-UHFFFAOYSA-N Argon Chemical compound [Ar] XKRFYHLGVUSROY-UHFFFAOYSA-N 0.000 claims 8
- 239000012634 fragment Substances 0.000 claims 8
- UMJSCPRVCHMLSP-UHFFFAOYSA-N pyridine Natural products COC1=CC=CN=C1 UMJSCPRVCHMLSP-UHFFFAOYSA-N 0.000 claims 7
- OISVCGZHLKNMSJ-UHFFFAOYSA-N 2,6-dimethylpyridine Chemical compound CC1=CC=CC(C)=N1 OISVCGZHLKNMSJ-UHFFFAOYSA-N 0.000 claims 6
- QGZKDVFQNNGYKY-UHFFFAOYSA-N ammonia Natural products N QGZKDVFQNNGYKY-UHFFFAOYSA-N 0.000 claims 6
- 230000015572 biosynthetic process Effects 0.000 claims 6
- JXTHNDFMNIQAHM-UHFFFAOYSA-N dichloroacetic acid Chemical compound OC(=O)C(Cl)Cl JXTHNDFMNIQAHM-UHFFFAOYSA-N 0.000 claims 6
- 238000000921 elemental analysis Methods 0.000 claims 6
- 108090000623 proteins and genes Proteins 0.000 claims 6
- VHUUQVKOLVNVRT-UHFFFAOYSA-N Ammonium hydroxide Chemical compound [NH4+].[OH-] VHUUQVKOLVNVRT-UHFFFAOYSA-N 0.000 claims 5
- WYURNTSHIVDZCO-UHFFFAOYSA-N Tetrahydrofuran Chemical compound C1CCOC1 WYURNTSHIVDZCO-UHFFFAOYSA-N 0.000 claims 5
- 235000011114 ammonium hydroxide Nutrition 0.000 claims 5
- 229910052740 iodine Inorganic materials 0.000 claims 5
- 238000002360 preparation method Methods 0.000 claims 5
- 125000001731 2-cyanoethyl group Chemical group [H]C([H])(*)C([H])([H])C#N 0.000 claims 4
- NLXLAEXVIDQMFP-UHFFFAOYSA-N Ammonium chloride Substances [NH4+].[Cl-] NLXLAEXVIDQMFP-UHFFFAOYSA-N 0.000 claims 4
- IJGRMHOSHXDMSA-UHFFFAOYSA-N Atomic nitrogen Chemical compound N#N IJGRMHOSHXDMSA-UHFFFAOYSA-N 0.000 claims 4
- 150000001412 amines Chemical group 0.000 claims 4
- 125000003277 amino group Chemical group 0.000 claims 4
- 229910052786 argon Inorganic materials 0.000 claims 4
- 238000006243 chemical reaction Methods 0.000 claims 4
- NEHMKBQYUWJMIP-UHFFFAOYSA-N chloromethane Chemical compound ClC NEHMKBQYUWJMIP-UHFFFAOYSA-N 0.000 claims 4
- 239000011521 glass Substances 0.000 claims 4
- 125000004430 oxygen atom Chemical group O* 0.000 claims 4
- RYHBNJHYFVUHQT-UHFFFAOYSA-N 1,4-Dioxane Chemical compound C1COCCO1 RYHBNJHYFVUHQT-UHFFFAOYSA-N 0.000 claims 3
- NBIIXXVUZAFLBC-UHFFFAOYSA-N Phosphoric acid Chemical compound OP(O)(O)=O NBIIXXVUZAFLBC-UHFFFAOYSA-N 0.000 claims 3
- 125000003236 benzoyl group Chemical group [H]C1=C([H])C([H])=C(C([H])=C1[H])C(*)=O 0.000 claims 3
- 229910052799 carbon Inorganic materials 0.000 claims 3
- 229960005215 dichloroacetic acid Drugs 0.000 claims 3
- 238000001962 electrophoresis Methods 0.000 claims 3
- 238000004128 high performance liquid chromatography Methods 0.000 claims 3
- 235000011007 phosphoric acid Nutrition 0.000 claims 3
- OJMIONKXNSYLSR-UHFFFAOYSA-N phosphorous acid Chemical compound OP(O)O OJMIONKXNSYLSR-UHFFFAOYSA-N 0.000 claims 3
- 125000002924 primary amino group Chemical group [H]N([H])* 0.000 claims 3
- 125000006239 protecting group Chemical group 0.000 claims 3
- 239000011541 reaction mixture Substances 0.000 claims 3
- 238000003756 stirring Methods 0.000 claims 3
- 238000003786 synthesis reaction Methods 0.000 claims 3
- XLYOFNOQVPJJNP-UHFFFAOYSA-N water Substances O XLYOFNOQVPJJNP-UHFFFAOYSA-N 0.000 claims 3
- XWKFPIODWVPXLX-UHFFFAOYSA-N 2-methyl-5-methylpyridine Natural products CC1=CC=C(C)N=C1 XWKFPIODWVPXLX-UHFFFAOYSA-N 0.000 claims 2
- OLXZPDWKRNYJJZ-UHFFFAOYSA-N 5-(6-aminopurin-9-yl)-2-(hydroxymethyl)oxolan-3-ol Chemical compound C1=NC=2C(N)=NC=NC=2N1C1CC(O)C(CO)O1 OLXZPDWKRNYJJZ-UHFFFAOYSA-N 0.000 claims 2
- ZCYVEMRRCGMTRW-UHFFFAOYSA-N 7553-56-2 Chemical compound [I] ZCYVEMRRCGMTRW-UHFFFAOYSA-N 0.000 claims 2
- OKTJSMMVPCPJKN-UHFFFAOYSA-N Carbon Chemical compound [C] OKTJSMMVPCPJKN-UHFFFAOYSA-N 0.000 claims 2
- RTZKZFJDLAIYFH-UHFFFAOYSA-N Diethyl ether Chemical compound CCOCC RTZKZFJDLAIYFH-UHFFFAOYSA-N 0.000 claims 2
- TWRXJAOTZQYOKJ-UHFFFAOYSA-L Magnesium chloride Chemical compound [Mg+2].[Cl-].[Cl-] TWRXJAOTZQYOKJ-UHFFFAOYSA-L 0.000 claims 2
- PXIPVTKHYLBLMZ-UHFFFAOYSA-N Sodium azide Chemical compound [Na+].[N-]=[N+]=[N-] PXIPVTKHYLBLMZ-UHFFFAOYSA-N 0.000 claims 2
- WEVYAHXRMPXWCK-FIBGUPNXSA-N acetonitrile-d3 Chemical compound [2H]C([2H])([2H])C#N WEVYAHXRMPXWCK-FIBGUPNXSA-N 0.000 claims 2
- 239000002253 acid Substances 0.000 claims 2
- IJOOHPMOJXWVHK-UHFFFAOYSA-N chlorotrimethylsilane Chemical compound C[Si](C)(C)Cl IJOOHPMOJXWVHK-UHFFFAOYSA-N 0.000 claims 2
- 238000004587 chromatography analysis Methods 0.000 claims 2
- 238000010511 deprotection reaction Methods 0.000 claims 2
- ZJULYDCRWUEPTK-UHFFFAOYSA-N dichloromethyl Chemical compound Cl[CH]Cl ZJULYDCRWUEPTK-UHFFFAOYSA-N 0.000 claims 2
- 238000001704 evaporation Methods 0.000 claims 2
- 230000008020 evaporation Effects 0.000 claims 2
- 238000005469 granulation Methods 0.000 claims 2
- 230000003179 granulation Effects 0.000 claims 2
- 239000011630 iodine Substances 0.000 claims 2
- VNWKTOKETHGBQD-UHFFFAOYSA-N methane Natural products C VNWKTOKETHGBQD-UHFFFAOYSA-N 0.000 claims 2
- 229940050176 methyl chloride Drugs 0.000 claims 2
- 239000000203 mixture Substances 0.000 claims 2
- PSHKMPUSSFXUIA-UHFFFAOYSA-N n,n-dimethylpyridin-2-amine Chemical compound CN(C)C1=CC=CC=N1 PSHKMPUSSFXUIA-UHFFFAOYSA-N 0.000 claims 2
- 229910052757 nitrogen Inorganic materials 0.000 claims 2
- 102000004169 proteins and genes Human genes 0.000 claims 2
- 238000000746 purification Methods 0.000 claims 2
- AOJFQRQNPXYVLM-UHFFFAOYSA-N pyridin-1-ium;chloride Chemical compound [Cl-].C1=CC=[NH+]C=C1 AOJFQRQNPXYVLM-UHFFFAOYSA-N 0.000 claims 2
- VZGDMQKNWNREIO-UHFFFAOYSA-N tetrachloromethane Chemical compound ClC(Cl)(Cl)Cl VZGDMQKNWNREIO-UHFFFAOYSA-N 0.000 claims 2
- YLQBMQCUIZJEEH-UHFFFAOYSA-N tetrahydrofuran Natural products C=1C=COC=1 YLQBMQCUIZJEEH-UHFFFAOYSA-N 0.000 claims 2
- 150000003536 tetrazoles Chemical class 0.000 claims 2
- PEHFQQWAINXOQG-UHFFFAOYSA-N (2-methoxyacetyl) 2-methoxyacetate Chemical compound COCC(=O)OC(=O)COC PEHFQQWAINXOQG-UHFFFAOYSA-N 0.000 claims 1
- TYZQUYUIVHHLBA-UHFFFAOYSA-N (2-propan-2-yloxyacetyl) 2-propan-2-yloxyacetate Chemical compound CC(C)OCC(=O)OC(=O)COC(C)C TYZQUYUIVHHLBA-UHFFFAOYSA-N 0.000 claims 1
- ADFXKUOMJKEIND-UHFFFAOYSA-N 1,3-dicyclohexylurea Chemical compound C1CCCCC1NC(=O)NC1CCCCC1 ADFXKUOMJKEIND-UHFFFAOYSA-N 0.000 claims 1
- JBWYRBLDOOOJEU-UHFFFAOYSA-N 1-[chloro-(4-methoxyphenyl)-phenylmethyl]-4-methoxybenzene Chemical compound C1=CC(OC)=CC=C1C(Cl)(C=1C=CC(OC)=CC=1)C1=CC=CC=C1 JBWYRBLDOOOJEU-UHFFFAOYSA-N 0.000 claims 1
- KJUGUADJHNHALS-UHFFFAOYSA-N 1H-tetrazole Chemical compound C=1N=NNN=1 KJUGUADJHNHALS-UHFFFAOYSA-N 0.000 claims 1
- FALRKNHUBBKYCC-UHFFFAOYSA-N 2-(chloromethyl)pyridine-3-carbonitrile Chemical compound ClCC1=NC=CC=C1C#N FALRKNHUBBKYCC-UHFFFAOYSA-N 0.000 claims 1
- BTJIUGUIPKRLHP-UHFFFAOYSA-N 4-nitrophenol Chemical compound OC1=CC=C([N+]([O-])=O)C=C1 BTJIUGUIPKRLHP-UHFFFAOYSA-N 0.000 claims 1
- USFZMSVCRYTOJT-UHFFFAOYSA-N Ammonium acetate Chemical compound N.CC(O)=O USFZMSVCRYTOJT-UHFFFAOYSA-N 0.000 claims 1
- SVHKKBMWECMQHY-HOSYDEDBSA-N C(C)(C)OCC(=O)NC=1C=2N=CN([C@H]3C[C@H](O)[C@@H](CO)O3)C=2N=CN=1 Chemical compound C(C)(C)OCC(=O)NC=1C=2N=CN([C@H]3C[C@H](O)[C@@H](CO)O3)C=2N=CN=1 SVHKKBMWECMQHY-HOSYDEDBSA-N 0.000 claims 1
- BNZLJZYIYJKHOL-QQXLSSBLSA-N CC(C)OCC([C@@](C1)(N2C(N=C(N)NC3=O)=C3N=C2)O[C@H](CO)[C@H]1O)=O Chemical compound CC(C)OCC([C@@](C1)(N2C(N=C(N)NC3=O)=C3N=C2)O[C@H](CO)[C@H]1O)=O BNZLJZYIYJKHOL-QQXLSSBLSA-N 0.000 claims 1
- PQLVXDKIJBQVDF-UHFFFAOYSA-N acetic acid;hydrate Chemical compound O.CC(O)=O PQLVXDKIJBQVDF-UHFFFAOYSA-N 0.000 claims 1
- PBCJIPOGFJYBJE-UHFFFAOYSA-N acetonitrile;hydrate Chemical compound O.CC#N PBCJIPOGFJYBJE-UHFFFAOYSA-N 0.000 claims 1
- 239000011149 active material Substances 0.000 claims 1
- 150000003835 adenosine derivatives Chemical class 0.000 claims 1
- 230000002411 adverse Effects 0.000 claims 1
- 229910021529 ammonia Inorganic materials 0.000 claims 1
- 230000001851 biosynthetic effect Effects 0.000 claims 1
- 238000004140 cleaning Methods 0.000 claims 1
- 239000012043 crude product Substances 0.000 claims 1
- 238000002425 crystallisation Methods 0.000 claims 1
- 230000008025 crystallization Effects 0.000 claims 1
- 231100000433 cytotoxic Toxicity 0.000 claims 1
- 230000001472 cytotoxic effect Effects 0.000 claims 1
- 238000000354 decomposition reaction Methods 0.000 claims 1
- 239000003480 eluent Substances 0.000 claims 1
- 238000010828 elution Methods 0.000 claims 1
- 125000001495 ethyl group Chemical group [H]C([H])([H])C([H])([H])* 0.000 claims 1
- 239000000706 filtrate Substances 0.000 claims 1
- 125000000524 functional group Chemical group 0.000 claims 1
- 238000010438 heat treatment Methods 0.000 claims 1
- 150000002431 hydrogen Chemical class 0.000 claims 1
- 239000011147 inorganic material Substances 0.000 claims 1
- 230000003993 interaction Effects 0.000 claims 1
- PNDPGZBMCMUPRI-UHFFFAOYSA-N iodine Chemical compound II PNDPGZBMCMUPRI-UHFFFAOYSA-N 0.000 claims 1
- 229910001629 magnesium chloride Inorganic materials 0.000 claims 1
- 230000008018 melting Effects 0.000 claims 1
- 238000002844 melting Methods 0.000 claims 1
- 239000011368 organic material Substances 0.000 claims 1
- 150000001451 organic peroxides Chemical class 0.000 claims 1
- 150000002978 peroxides Chemical class 0.000 claims 1
- 238000002264 polyacrylamide gel electrophoresis Methods 0.000 claims 1
- 239000002244 precipitate Substances 0.000 claims 1
- 239000011347 resin Substances 0.000 claims 1
- 229920005989 resin Polymers 0.000 claims 1
- 230000000717 retained effect Effects 0.000 claims 1
- 150000003839 salts Chemical class 0.000 claims 1
- 239000007858 starting material Substances 0.000 claims 1
- 229940014800 succinic anhydride Drugs 0.000 claims 1
- 230000002194 synthesizing effect Effects 0.000 claims 1
- CIHOLLKRGTVIJN-UHFFFAOYSA-N tert‐butyl hydroperoxide Chemical compound CC(C)(C)OO CIHOLLKRGTVIJN-UHFFFAOYSA-N 0.000 claims 1
- UEUXEKPTXMALOB-UHFFFAOYSA-J tetrasodium;2-[2-[bis(carboxylatomethyl)amino]ethyl-(carboxylatomethyl)amino]acetate Chemical compound [Na+].[Na+].[Na+].[Na+].[O-]C(=O)CN(CC([O-])=O)CCN(CC([O-])=O)CC([O-])=O UEUXEKPTXMALOB-UHFFFAOYSA-J 0.000 claims 1
- 230000014616 translation Effects 0.000 claims 1
- 239000005051 trimethylchlorosilane Substances 0.000 claims 1
- 125000004429 atom Chemical group 0.000 abstract 3
- UAOMVDZJSHZZME-UHFFFAOYSA-N diisopropylamine Chemical compound CC(C)NC(C)C UAOMVDZJSHZZME-UHFFFAOYSA-N 0.000 abstract 3
- ROSDSFDQCJNGOL-UHFFFAOYSA-N Dimethylamine Chemical compound CNC ROSDSFDQCJNGOL-UHFFFAOYSA-N 0.000 abstract 2
- MMBCDGALRVUEEQ-UHFFFAOYSA-N 2-ethynoxypropane Chemical group CC(C)OC#C MMBCDGALRVUEEQ-UHFFFAOYSA-N 0.000 abstract 1
- YNAVUWVOSKDBBP-UHFFFAOYSA-N Morpholine Chemical group C1COCCN1 YNAVUWVOSKDBBP-UHFFFAOYSA-N 0.000 abstract 1
- 229940043279 diisopropylamine Drugs 0.000 abstract 1
- 125000002147 dimethylamino group Chemical group [H]C([H])([H])N(*)C([H])([H])[H] 0.000 description 1
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- Saccharide Compounds (AREA)
Abstract
Description
RZECZPOSPOLITAREPUBLIC
POLSKAPOLAND
Urząd Patentowy Rzeczypospolitej Polskiej ® OPIS PATENTOWY® PL® 157777 ® BIThe Patent Office of the Republic of Poland ® PATENT DESCRIPTION® PL® 157777 ® BI
Numer zgłoszenia: 273723 z-λ (£9 IntCl5:Application number: 273723 z-λ (£ 9 IntCl 5 :
C07H 21/02C07H 21/02
DaU zgłoszenia: CZ^TELUIAApplication daU: CZ ^ TELUIA
OGOLKAOGOLKA
Sposób wytwarzania oligonukleotydówMethod for producing oligonucleotides
Zgłoszenie ogłoszono:Application announced:
22.01.1990 BUP 02/90January 22, 1990 BUP 02/90
Uprawniony z patentu:The holder of the patent:
Polska Adademia Nauk Centrum BadańPolish Academy of Sciences Research Center
Molekularnych i Makromolekularnych, Łódź, PLMolecular and Macromolecular, Łódź, PL
O udzieleniu patentu ogłoszono: 31.07.1992 WUP 07/92The grant of the patent was announced on: 07/31/1992 WUP 07/92
Twórcy wynalazku:Inventors:
Bogdan Uznański, Łódź, PL Andrzej Wilk, Łódź, PL Andrzej Grajkowski, Łódź, PL Wojciech J. Stec, Łódź, PLBogdan Uznański, Lodz, PL Andrzej Wilk, Lodz, PL Andrzej Grajkowski, Lodz, PL Wojciech J. Stec, Lodz, PL
PL 157777 BIPL 157777 BI
1. Sposób wytwarzania oligonukleotydów o ogólnym wzorze 1, w którym R2 oznacza grupę OH lub grupęA method for producing oligonucleotides of general formula I, wherein R 2 is an OH group or a group
57J etoksylową, Y oznacza atom tlenu, ni=l, n oznacza ' ' liczbę 0-200, a B oznacza resztę adeniny, guaniny lub cytozyny o wzorach odpowiednio 2, 3 albo 4, w których Ri oznacza atom wodoru lub B oznacza resztę tyminy o wzorze 5 z tym, że wszystkie B nie oznaczają tyminy, przez prowadzoną w obecności czynnika sprzęgającego kondensację w pozycjach 5' i 3' kolejnych nukleozydów, takich jak pochodne adenozyny, guanozyny, cytydyny i tymidyny, z których to nukleozydów pierwszy jest związany kowalencyjnie ze stałym nośnikiem, utlenianie produktu każdej kondensacji i usuwanie grupy zabezpieczającej funckję 5' - hydroksylową oraz odszczepianie wytworzonego digonukleotydu od stałego nośnika, znamienny tym, że jako pochodne adenozyny, guanozyny i cytydyny stosuje się nukleozydy o wzorze 6 lub o wzorze 7, jeżeli pochodna ta jest pierwszym nukleozydem, w których to wzorach Z oznacza atom wodoru, a dla wzoru 6 grupę dimetoksytrifenylometylową, R2 oznacza grupę 2-cyjanoetoksylową lub etoksylową, R3 oznacza grupę diizopropyloaminową, dimetyloaminową lub grupę morfolinową, S oznacza stały nośnik z przedłużonym łańcuchem, m = 0, a B' oznacza resztę adeniny, guaniny lub cytozyny 0 wzorach odpowiednio 2, 3 albo 4, w których Ri oznacza grupę izopropoksyacetylową, przy czym grupę blokującą funkcję 5' - hydroksylową usuwa się 2 ostatniego nukleotydu przez kwaśną hydrolizę, przed odszczepieniem produktu od nośnika lub po odszczepieniu go i oczyszczeniu.57J ethoxy, Y is oxygen, ni = 1, n is 0-200, and B is an adenine, guanine or cytosine residue of the formulas 2, 3 or 4, respectively, where Ri is hydrogen or B is a thymine residue of formula 5 except that all B are not thymine, by condensation carried out in the presence of a coupling agent at the 5 'and 3' positions of consecutive nucleosides such as adenosine, guanosine, cytidine and thymidine derivatives, the first of which is covalently linked solid support, oxidation of the product of each condensation and removal of the 5'-hydroxyl protecting group and cleavage of the resulting digonucleotide from the solid support, characterized in that nucleosides of formula 6 or formula 7 are used as derivatives of adenosine, guanosine and cytidine, if this derivative is the first nucleoside in which Z is a hydrogen atom and for formula 6 a dimethoxytriphenylmethyl group, R2 is a 2-cyanoethoxy or ethoxy group, R3 is Significance diisopropylamino group, dimethylamino or morpholino group, S is a solid support with an extended chain, m = 0, and B 'is a residue of adenine, guanine or cytosine 0 formulas respectively to 2, 3 or 4, wherein Ri is izopropoksyacetylową, wherein the group the blocking 5 '- hydroxyl function is removed by the acid hydrolysis of the last 2 nucleotides, before cleavage of the product from the support or after it has been cleaved and purified.
wzór 2pattern 2
WZÓR 3MODEL 3
H-N-RiH-N-Ri
IAND
WZÓR iPATTERN i
2-02-0
WZÓR 5MODEL 5
WZÓR 6MODEL 6
2- oA B2- oA B
V?V?
O-SAXIS
W&R 7W&R 7
Sposób wytwarzania oligonukleotydówMethod for producing oligonucleotides
Claims (6)
Priority Applications (1)
| Application Number | Priority Date | Filing Date | Title |
|---|---|---|---|
| PL27372388A PL157777B1 (en) | 1988-07-14 | 1988-07-14 | Method of obtaining oligonucleotides |
Applications Claiming Priority (1)
| Application Number | Priority Date | Filing Date | Title |
|---|---|---|---|
| PL27372388A PL157777B1 (en) | 1988-07-14 | 1988-07-14 | Method of obtaining oligonucleotides |
Publications (2)
| Publication Number | Publication Date |
|---|---|
| PL273723A1 PL273723A1 (en) | 1990-01-22 |
| PL157777B1 true PL157777B1 (en) | 1992-07-31 |
Family
ID=20043255
Family Applications (1)
| Application Number | Title | Priority Date | Filing Date |
|---|---|---|---|
| PL27372388A PL157777B1 (en) | 1988-07-14 | 1988-07-14 | Method of obtaining oligonucleotides |
Country Status (1)
| Country | Link |
|---|---|
| PL (1) | PL157777B1 (en) |
-
1988
- 1988-07-14 PL PL27372388A patent/PL157777B1/en unknown
Also Published As
| Publication number | Publication date |
|---|---|
| PL273723A1 (en) | 1990-01-22 |
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