HK1237365B - Method for increasing the specific production rate of eukaryotic cells - Google Patents
Method for increasing the specific production rate of eukaryotic cellsInfo
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- HK1237365B HK1237365B HK17111153.1A HK17111153A HK1237365B HK 1237365 B HK1237365 B HK 1237365B HK 17111153 A HK17111153 A HK 17111153A HK 1237365 B HK1237365 B HK 1237365B
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Description
本发明属于多肽生产和细胞培养基领域。本文中报导了细胞培养基中间-酪氨酸用于增加比生产率(specific productivity;qP)的用途、在包含间-酪氨酸的细胞培养基中产生多肽的方法和包含间-酪氨酸的细胞培养基。The present invention belongs to the field of polypeptide production and cell culture media. Reported herein are the use of meta-tyrosine in a cell culture medium for increasing specific productivity (qP), methods for producing polypeptides in a cell culture medium containing meta-tyrosine, and cell culture media containing meta-tyrosine.
发明背景Background of the Invention
细胞培养物用于发酵过程中以产生多种物质、特别是产生蛋白质。对细胞培养物在遗传上未修饰并且形成自身代谢产物的方法和其中生物以这种方式经遗传修饰,从而它们产生较大数量的自身物质如蛋白质或产生外来(异源)物质的方法之间进行了区分。向产生多种物质的生物供应营养培养基,所述营养培养基保障生物存活并且使得能够产生所需的目标化合物。已知使得能够最佳培养特定宿主的众多培养基用于这些目的。Cell cultures are used in fermentation processes to produce a variety of substances, particularly proteins. A distinction is made between processes in which the cell cultures are genetically unmodified and form their own metabolites, and processes in which organisms are genetically modified so that they produce larger quantities of their own substances, such as proteins, or produce foreign (heterologous) substances. Organisms producing a variety of substances are supplied with a nutrient medium that ensures their survival and enables the production of the desired target compound. Numerous culture media are known that allow for optimal cultivation of specific hosts for these purposes.
认为蛋白质生物治疗药(如单克隆抗体)是充分确立的治疗严重疾病和病症如癌症、多发性硬化症和类风湿性关节炎的药物(参见来自Leader等人的综述(Leader等人,2008))。不得不密切监测这些高活性化合物的关键分子质量属性以确保患者的安全性和功能有效性。在始自微生物和细胞培养物合成的整个生产过程期间、在蛋白质纯化、配制和储存期间能发生对目标蛋白的非预期化学修饰。对蛋白质药物最常观察到的化学降解途径是天冬酰胺脱酰胺化、天冬氨酸异构化(Wakankar和Borchardt,2006;Diepold等人,2012;Dengl等人2013)和氧化(Li等人,1995;Ji等人,2009;Hensel等人,2011)。最近,几项研究报告了一种额外的相关的酶生成的副产物,重组合成的生物治疗药的所谓蛋白质SV(Khetan等人,2010;Wen等人,2009;Feeney等人,2013)。SV是在遗传预计的位置处非预期的氨基酸替换,所述氨基酸替换源自内在的核苷酸突变(Bridges,2001)或翻译期间替代性氨基酸错误并入(Zeck等人,2012)。认为由内生底物限制过程中氨酰基-tRNA合成酶(aaRS)对结构相关的氨基酸的混乱引起了翻译的错误并入(Feeney等人,2013;Jakubowski,2001)。Gurer-Urhan等人(2006)报道了游离间-酪氨酸错误并入细胞蛋白作为氧化型氨基酸的潜在细胞毒机制。Protein biotherapeutics (e.g., monoclonal antibodies) are considered well-established drugs for the treatment of serious diseases and conditions such as cancer, multiple sclerosis, and rheumatoid arthritis (see review by Leader et al. (Leader et al., 2008)). Key molecular mass attributes of these highly active compounds must be closely monitored to ensure patient safety and functional efficacy. Unintended chemical modifications of target proteins can occur throughout the manufacturing process, starting with synthesis in microorganisms and cell cultures, and during protein purification, formulation, and storage. The most commonly observed chemical degradation pathways for protein drugs are asparagine deamidation, aspartate isomerization (Wakankar and Borchardt, 2006; Diepold et al., 2012; Dengl et al., 2013), and oxidation (Li et al., 1995; Ji et al., 2009; Hensel et al., 2011). Recently, several studies have reported an additional, related, enzymatic byproduct, the so-called protein SV, of recombinantly synthesized biotherapeutics (Khetan et al., 2010; Wen et al., 2009; Feeney et al., 2013). SVs are unintended amino acid substitutions at genetically predicted positions, resulting from either intrinsic nucleotide mutations (Bridges, 2001) or misincorporation of alternative amino acids during translation (Zeck et al., 2012). Translational misincorporation is thought to result from the promiscuity of structurally related amino acids by aminoacyl-tRNA synthetases (aaRSs) during endogenous substrate limitation (Feeney et al., 2013; Jakubowski, 2001). Gurer-Urhan et al. (2006) reported misincorporation of free meta-tyrosine into cellular proteins as a potential cytotoxic mechanism of oxidized amino acids.
发明概述SUMMARY OF THE INVENTION
已经发现用间-酪氨酸补充培养基为产生(非内源)多肽的真核(宿主)细胞提供增加的比生产率(qP)。已经发现向真核细胞培养物添加间-酪氨酸不导致细胞成活力或终产物滴度显著降低。这种培养物中的细胞生长以不利方式减少/受影响(由减少的活细胞密度(VCD)和总体生物量产生(如CTI所指示)代表)。在本发明方法中,不需要进行温度变换、重量摩尔渗透压浓度变换或pH变换以增加所培养细胞的比生产率。也不需要通过添加药物如丙戊酸或丁酸钠调节比生产率。通过额外输入非限制性浓度的苯丙氨酸控制mRNA翻译期间在间-酪氨酸存在下替代性氨基酸错误并入所致的氨基酸序列变体(SV)的出现。It has been found that supplementing the culture medium with meta-tyrosine provides increased specific productivity (qP) for eukaryotic (host) cells producing (non-endogenous) polypeptides. It has been found that the addition of meta-tyrosine to eukaryotic cell cultures does not result in a significant decrease in cell viability or final product titer. Cell growth in such cultures is reduced/affected in an unfavorable manner (represented by a reduced viable cell density (VCD) and overall biomass production (as indicated by CTI)). In the methods of the present invention, no temperature shift, osmolality shift, or pH shift is required to increase the specific productivity of the cultured cells. Nor is it necessary to adjust the specific productivity by adding drugs such as valproic acid or sodium butyrate. The occurrence of amino acid sequence variants (SVs) caused by the misincorporation of alternative amino acids in the presence of meta-tyrosine during mRNA translation is controlled by the additional input of non-limiting concentrations of phenylalanine.
如本文中报道的一个方面是间-酪氨酸用于增加产生/表达/分泌(非内源/外源)多肽的真核宿主细胞的比生产率的用途。One aspect as reported herein is the use of meta-tyrosine for increasing the specific productivity of eukaryotic host cells producing/expressing/secreting a (non-endogenous/exogenous) polypeptide.
在这个方面的一个实施方案中,真核宿主细胞是哺乳动物细胞。在这个方面的一个实施方案中,真核宿主细胞是中国仓鼠卵巢(CHO)细胞。在这个方面的一个实施方案中,CHO细胞是正在悬浮生长的CHO细胞/细胞系(=CHO悬浮细胞/细胞系)。在这个方面的一个实施方案中,CHO细胞是CHO-K1细胞。In one embodiment of this aspect, the eukaryotic host cell is a mammalian cell. In one embodiment of this aspect, the eukaryotic host cell is a Chinese hamster ovary (CHO) cell. In one embodiment of this aspect, the CHO cell is a CHO cell/cell line grown in suspension (=CHO suspension cells/cell line). In one embodiment of this aspect, the CHO cell is a CHO-K1 cell.
在这个方面的一个实施方案中,添加间-酪氨酸以产生0.2mM至0.7mM的(终)浓度。在这个方面的一个实施方案中,添加间-酪氨酸以产生0.25mM至0.6mM的(终)浓度。在这个方面的一个实施方案中,添加间-酪氨酸以产生0.3mM至0.5mM的(终)浓度。在这个方面的一个实施方案中,添加间-酪氨酸以产生0.3mM至0.4mM的(终)浓度。In one embodiment of this aspect, m-tyrosine is added to give a (final) concentration of 0.2 mM to 0.7 mM. In one embodiment of this aspect, m-tyrosine is added to give a (final) concentration of 0.25 mM to 0.6 mM. In one embodiment of this aspect, m-tyrosine is added to give a (final) concentration of 0.3 mM to 0.5 mM. In one embodiment of this aspect, m-tyrosine is added to give a (final) concentration of 0.3 mM to 0.4 mM.
在这个方面的一个实施方案中,与不补充间-酪氨酸的相同生产方法相比,比生产率增加了至少5%。在这个方面的一个实施方案中,与不补充间-酪氨酸的相同生产过程相比,比生产率增加了至少10%。在这个方面的一个实施方案中,与不补充间-酪氨酸的相同生产过程相比,比生产率增加了至少20%。在这个方面的一个实施方案中,与不补充间-酪氨酸的相同生产过程相比,比生产率增加了至少25%。In one embodiment of this aspect, the specific productivity is increased by at least 5% compared to the same production process without the supplementation of meta-tyrosine. In one embodiment of this aspect, the specific productivity is increased by at least 10% compared to the same production process without the supplementation of meta-tyrosine. In one embodiment of this aspect, the specific productivity is increased by at least 20% compared to the same production process without the supplementation of meta-tyrosine. In one embodiment of this aspect, the specific productivity is increased by at least 25% compared to the same production process without the supplementation of meta-tyrosine.
在这个方面的一个实施方案中,在无蛋白质的培养基中进行使用。在这个方面的一个实施方案中,在化学定义的培养基中进行使用。在这个方面的一个实施方案中,在无蛋白质的化学定义的培养基中进行使用。In one embodiment of this aspect, the use is in a protein-free culture medium. In one embodiment of this aspect, the use is in a chemically defined culture medium. In one embodiment of this aspect, the use is in a protein-free chemically defined culture medium.
在这个方面的一个实施方案中,在以非限制性浓度额外包含苯丙氨酸的培养基中进行使用。在这个方面的一个实施方案中,在以非限制性浓度额外包含苯丙氨酸的培养基中进行使用,其中通过连续输入或通过发酵过程开始时或期间一次或多次独立推注(bolusshots)Phe母液,添加苯丙氨酸。In one embodiment of this aspect, use is carried out in a culture medium that additionally comprises phenylalanine at a non-limiting concentration. In one embodiment of this aspect, use is carried out in a culture medium that additionally comprises phenylalanine at a non-limiting concentration, wherein phenylalanine is added by continuous infusion or by one or more independent bolus shots of Phe stock solution at the beginning or during the fermentation process.
在这个方面的一个实施方案中,间-酪氨酸/苯丙氨酸的摩尔比低于或等于1.25。在这个方面的一个实施方案中,相对于Phe→m-Tyr错误并入的蛋白质序列最终精确度高于或等于95.0%。在这个方面的一个实施方案中,间-酪氨酸/苯丙氨酸的摩尔比低于或等于1.25并且相对于Phe→m-Tyr错误并入的蛋白质序列最终精确度高于或等于95.0%。这意味着5%或更少的间-酪氨酸残基相对于正确并入的苯丙氨酸残基错误并入蛋白质序列中。在这个方面的一个实施方案中,间-酪氨酸/苯丙氨酸的摩尔比低于或等于0.25。在这个方面的一个实施方案中,相对于Phe→m-Tyr错误并入的蛋白质序列最终精确度高于或等于99.0%。在这个方面的一个实施方案中,间-酪氨酸/苯丙氨酸的摩尔比低于或等于0.25并且相对于Phe→m-Tyr错误并入的蛋白质序列最终精确度高于或等于99.0%。在这个方面的一个实施方案中,间-酪氨酸/苯丙氨酸的摩尔比低于或等于0.125。在这个方面的一个实施方案中,相对于Phe→m-Tyr错误并入的蛋白质序列最终精确度高于或等于99.5%。在这个方面的一个实施方案中,间-酪氨酸/苯丙氨酸的摩尔比低于或等于0.125并且相对于Phe→m-Tyr错误并入的蛋白质序列最终精确度高于或等于99.5%。在这个方面的一个实施方案中,间-酪氨酸/苯丙氨酸的摩尔比低于或等于0.025。在这个方面的一个实施方案中,相对于Phe→m-Tyr错误并入的蛋白质序列最终精确度高于或等于99.9%。在这个方面的一个实施方案中,间-酪氨酸/苯丙氨酸的摩尔比低于或等于0.025并且相对于Phe→m-Tyr错误并入的蛋白质序列最终精确度高于或等于99.9%。In one embodiment of this aspect, the molar ratio of meta-tyrosine to phenylalanine is less than or equal to 1.25. In one embodiment of this aspect, the final accuracy relative to the protein sequence of Phe→m-Tyr misincorporation is greater than or equal to 95.0%. In one embodiment of this aspect, the molar ratio of meta-tyrosine to phenylalanine is less than or equal to 1.25 and the final accuracy relative to the protein sequence of Phe→m-Tyr misincorporation is greater than or equal to 95.0%. This means that 5% or less of the meta-tyrosine residues are misincorporated into the protein sequence relative to the correctly incorporated phenylalanine residues. In one embodiment of this aspect, the molar ratio of meta-tyrosine to phenylalanine is less than or equal to 0.25. In one embodiment of this aspect, the final accuracy relative to the protein sequence of Phe→m-Tyr misincorporation is greater than or equal to 99.0%. In one embodiment of this aspect, the molar ratio of meta-tyrosine to phenylalanine is less than or equal to 0.25 and the final accuracy relative to the protein sequence of Phe→m-Tyr misincorporation is greater than or equal to 99.0%. In one embodiment of this aspect, the molar ratio of meta-tyrosine/phenylalanine is less than or equal to 0.125. In one embodiment of this aspect, the final accuracy relative to the protein sequence of Phe→m-Tyr misincorporation is greater than or equal to 99.5%. In one embodiment of this aspect, the molar ratio of meta-tyrosine/phenylalanine is less than or equal to 0.125 and the final accuracy relative to the protein sequence of Phe→m-Tyr misincorporation is greater than or equal to 99.5%. In one embodiment of this aspect, the molar ratio of meta-tyrosine/phenylalanine is less than or equal to 0.025. In one embodiment of this aspect, the final accuracy relative to the protein sequence of Phe→m-Tyr misincorporation is greater than or equal to 99.9%. In one embodiment of this aspect, the molar ratio of meta-tyrosine/phenylalanine is less than or equal to 0.025 and the final accuracy relative to the protein sequence of Phe→m-Tyr misincorporation is greater than or equal to 99.9%.
在这个方面的一个实施方案中,在恒定温度进行使用。In one embodiment of this aspect, use is performed at a constant temperature.
在这个方面的一个实施方案中,在使用过程中以降低的温度进行使用。In one embodiment of this aspect, use is performed at a reduced temperature during use.
在这个方面的一个实施方案中,是在恒定的pH进行使用。In one embodiment of this aspect, use is performed at a constant pH.
在这个方面的一个实施方案中,多肽是免疫球蛋白或其变体或其片段或其融合物。在这个方面的一个实施方案中,多肽是人免疫球蛋白或人源化免疫球蛋白或其变体或其片段或其融合物。在这个方面的一个实施方案中,多肽是人源化抗体。在这个方面的一个实施方案中,多肽是人源化单克隆抗体。In one embodiment of this aspect, the polypeptide is an immunoglobulin or a variant thereof or a fragment thereof or a fusion thereof. In one embodiment of this aspect, the polypeptide is a human immunoglobulin or a humanized immunoglobulin or a variant thereof or a fragment thereof or a fusion thereof. In one embodiment of this aspect, the polypeptide is a humanized antibody. In one embodiment of this aspect, the polypeptide is a humanized monoclonal antibody.
如本文中报道的一个方面是一种在表达编码多肽的核酸的真核宿主细胞中产生多肽的方法,所述方法包括在包含间-酪氨酸的培养基中培养真核宿主细胞。One aspect as reported herein is a method for producing a polypeptide in a eukaryotic host cell expressing a nucleic acid encoding the polypeptide, the method comprising culturing the eukaryotic host cell in a culture medium comprising meta-tyrosine.
在这个方面的一个实施方案中,添加间-酪氨酸以产生0.2mM至0.7mM的(终)浓度。在这个方面的一个实施方案中,添加间-酪氨酸以产生0.25mM至0.6mM的(终)浓度。在这个方面的一个实施方案中,添加间-酪氨酸以产生0.3mM至0.5mM的(终)浓度。在这个方面的一个实施方案中,添加间-酪氨酸以产生0.3mM至0.4mM的(终)浓度。In one embodiment of this aspect, m-tyrosine is added to give a (final) concentration of 0.2 mM to 0.7 mM. In one embodiment of this aspect, m-tyrosine is added to give a (final) concentration of 0.25 mM to 0.6 mM. In one embodiment of this aspect, m-tyrosine is added to give a (final) concentration of 0.3 mM to 0.5 mM. In one embodiment of this aspect, m-tyrosine is added to give a (final) concentration of 0.3 mM to 0.4 mM.
在这个方面的一个实施方案中,与不补充间-酪氨酸的相同生产过程相比,比生产率增加了至少5%。在这个方面的一个实施方案中,与不补充间-酪氨酸的相同生产过程相比,比生产率增加了至少10%。在这个方面的一个实施方案中,与不补充间-酪氨酸的相同生产过程相比,比生产率增加了至少20%。在这个方面的一个实施方案中,与不补充间-酪氨酸的相同生产过程相比,比生产率增加了至少25%。In one embodiment of this aspect, the specific productivity is increased by at least 5% compared to the same production process without the supplementation of meta-tyrosine. In one embodiment of this aspect, the specific productivity is increased by at least 10% compared to the same production process without the supplementation of meta-tyrosine. In one embodiment of this aspect, the specific productivity is increased by at least 20% compared to the same production process without the supplementation of meta-tyrosine. In one embodiment of this aspect, the specific productivity is increased by at least 25% compared to the same production process without the supplementation of meta-tyrosine.
在这个方面的一个实施方案中,真核宿主细胞是哺乳动物细胞。在这个方面的一个实施方案中,真核宿主细胞是中国仓鼠卵巢(CHO)细胞。在这个方面的一个实施方案中,CHO细胞是CHO悬浮细胞/以悬浮方式生长的CHO细胞。在这个方面的一个实施方案中,CHO细胞是CHO-K1细胞。In one embodiment of this aspect, the eukaryotic host cell is a mammalian cell. In one embodiment of this aspect, the eukaryotic host cell is a Chinese hamster ovary (CHO) cell. In one embodiment of this aspect, the CHO cell is a CHO suspension cell/a CHO cell grown in suspension. In one embodiment of this aspect, the CHO cell is a CHO-K1 cell.
在这个方面的一个实施方案中,在无蛋白质的培养基中进行所述方法。在这个方面的一个实施方案中,在化学定义的培养基中进行所述方法。在这个方面的一个实施方案中,在无蛋白质的化学定义的培养基中进行所述方法。In one embodiment of this aspect, the method is performed in a protein-free culture medium. In one embodiment of this aspect, the method is performed in a chemically defined culture medium. In one embodiment of this aspect, the method is performed in a protein-free chemically defined culture medium.
在这个方面的一个实施方案中,在以非限制性浓度额外包含苯丙氨酸的培养基中进行所述方法。在这个方面的一个实施方案中,在以非限制性浓度额外包含苯丙氨酸的培养基中进行所述方法,其中通过连续输入或通过发酵过程开始时或期间一次或多次独立推注Phe母液,添加苯丙氨酸。In one embodiment of this aspect, the method is performed in a culture medium that additionally comprises phenylalanine at a non-limiting concentration. In one embodiment of this aspect, the method is performed in a culture medium that additionally comprises phenylalanine at a non-limiting concentration, wherein phenylalanine is added by continuous infusion or by one or more independent boluses of a Phe stock solution at the beginning or during the fermentation process.
在这个方面的一个实施方案中,间-酪氨酸/苯丙氨酸的摩尔比低于或等于1.25。在这个方面的一个实施方案中,相对于Phe→m-Tyr错误并入的蛋白质序列最终精确度高于或等于95.0%。在这个方面的一个实施方案中,间-酪氨酸/苯丙氨酸的摩尔比低于或等于1.25并且相对于Phe→m-Tyr错误并入的蛋白质序列最终精确度高于或等于95.0%。这意味着5%或更少的间-酪氨酸残基相对于正确并入的苯丙氨酸残基错误并入蛋白质序列中。In one embodiment of this aspect, the molar ratio of meta-Tyrosine/phenylalanine is less than or equal to 1.25. In one embodiment of this aspect, the final accuracy of the protein sequence relative to Phe→m-Tyr misincorporation is greater than or equal to 95.0%. In one embodiment of this aspect, the molar ratio of meta-Tyrosine/phenylalanine is less than or equal to 1.25 and the final accuracy of the protein sequence relative to Phe→m-Tyr misincorporation is greater than or equal to 95.0%. This means that 5% or less of the meta-Tyrosine residues are misincorporated into the protein sequence relative to the correctly incorporated phenylalanine residues.
在这个方面的一个实施方案中,间-酪氨酸/苯丙氨酸的摩尔比低于或等于0.25。在这个方面的一个实施方案中,相对于Phe→m-Tyr错误并入的蛋白质序列最终精确度高于或等于99.0%。在这个方面的一个实施方案中,间-酪氨酸/苯丙氨酸的摩尔比低于或等于0.25并且相对于Phe→m-Tyr错误并入的蛋白质序列最终精确度高于或等于99.0%。In one embodiment of this aspect, the molar ratio of m-Tyrosine/Phenylalanine is less than or equal to 0.25. In one embodiment of this aspect, the final accuracy relative to the protein sequence of Phe→m-Tyr misincorporation is greater than or equal to 99.0%. In one embodiment of this aspect, the molar ratio of m-Tyrosine/Phenylalanine is less than or equal to 0.25 and the final accuracy relative to the protein sequence of Phe→m-Tyr misincorporation is greater than or equal to 99.0%.
在这个方面的一个实施方案中,间-酪氨酸/苯丙氨酸的摩尔比低于或等于0.125。在这个方面的一个实施方案中,相对于Phe→m-Tyr错误并入的蛋白质序列最终精确度高于或等于99.5%。在这个方面的一个实施方案中,间-酪氨酸/苯丙氨酸的摩尔比低于或等于0.125并且相对于Phe→m-Tyr错误并入的蛋白质序列最终精确度高于或等于99.5%。In one embodiment of this aspect, the molar ratio of m-Tyrosine/Phenylalanine is less than or equal to 0.125. In one embodiment of this aspect, the final accuracy relative to the protein sequence of Phe→m-Tyr misincorporation is greater than or equal to 99.5%. In one embodiment of this aspect, the molar ratio of m-Tyrosine/Phenylalanine is less than or equal to 0.125 and the final accuracy relative to the protein sequence of Phe→m-Tyr misincorporation is greater than or equal to 99.5%.
在这个方面的一个实施方案中,间-酪氨酸/苯丙氨酸的摩尔比低于或等于0.025。在这个方面的一个实施方案中,相对于Phe→m-Tyr错误并入的蛋白质序列最终精确度高于或等于99.9%。在这个方面的一个实施方案中,间-酪氨酸/苯丙氨酸的摩尔比低于或等于0.025并且相对于Phe→m-Tyr错误并入的蛋白质序列最终精确度高于或等于99.9%。In one embodiment of this aspect, the molar ratio of m-Tyrosine/phenylalanine is less than or equal to 0.025. In one embodiment of this aspect, the final accuracy relative to the protein sequence of Phe→m-Tyr misincorporation is greater than or equal to 99.9%. In one embodiment of this aspect, the molar ratio of m-Tyrosine/phenylalanine is less than or equal to 0.025 and the final accuracy relative to the protein sequence of Phe→m-Tyr misincorporation is greater than or equal to 99.9%.
在这个方面的一个实施方案中,在恒定温度进行所述方法。在这个方面的一个实施方案中,在使用过程中以降低的温度进行所述方法。In one embodiment of this aspect, the method is performed at a constant temperature. In one embodiment of this aspect, the method is performed at a reduced temperature during use.
在这个方面的一个实施方案中,在恒定的pH进行所述方法。In one embodiment of this aspect, the method is performed at a constant pH.
在这个方面的一个实施方案中,多肽是免疫球蛋白或其变体或其片段或其融合物。在这个方面的一个实施方案中,多肽是人免疫球蛋白或人源化免疫球蛋白或其变体或其片段或其融合物。在这个方面的一个实施方案中,多肽是人源化抗体。在这个方面的一个实施方案中,多肽是人源化单克隆抗体。In one embodiment of this aspect, the polypeptide is an immunoglobulin or a variant thereof or a fragment thereof or a fusion thereof. In one embodiment of this aspect, the polypeptide is a human immunoglobulin or a humanized immunoglobulin or a variant thereof or a fragment thereof or a fusion thereof. In one embodiment of this aspect, the polypeptide is a humanized antibody. In one embodiment of this aspect, the polypeptide is a humanized monoclonal antibody.
如本文中报道的一个方面是以低于或等于1.25的摩尔比包含间-酪氨酸和苯丙氨酸的培养基。如本文中报道的一个方面是以低于或等于1.25的摩尔比包含间-酪氨酸和苯丙氨酸的培养基并且相对于Phe→m-Tyr错误并入的蛋白质序列最终精确度高于或等于95.0%。这意味着5%或更少的间-酪氨酸残基相对于正确并入的苯丙氨酸残基错误并入蛋白质序列中。One aspect as reported herein is a culture medium comprising m-tyrosine and phenylalanine in a molar ratio lower than or equal to 1.25. One aspect as reported herein is a culture medium comprising m-tyrosine and phenylalanine in a molar ratio lower than or equal to 1.25 and a final accuracy of the protein sequence with respect to Phe→m-Tyr misincorporation higher than or equal to 95.0%. This means that 5% or less of the m-tyrosine residues were misincorporated into the protein sequence relative to the correctly incorporated phenylalanine residues.
如本文中报道的一个方面是以低于或等于0.25的摩尔比包含间-酪氨酸和苯丙氨酸的培养基。如本文中报道的一个方面是以低于或等于0.25的摩尔比包含间-酪氨酸和苯丙氨酸的培养基并且相对于Phe→m-Tyr错误并入的蛋白质序列最终精确度高于或等于99.0%。One aspect as reported herein is a culture medium comprising m-tyrosine and phenylalanine in a molar ratio lower than or equal to 0.25. One aspect as reported herein is a culture medium comprising m-tyrosine and phenylalanine in a molar ratio lower than or equal to 0.25 and a final accuracy of the protein sequence with respect to Phe→m-Tyr misincorporation higher than or equal to 99.0%.
如本文中报道的一个方面是以低于或等于0.125的摩尔比包含间-酪氨酸和苯丙氨酸的培养基。如本文中报道的一个方面是以低于或等于0.125的摩尔比包含间-酪氨酸和苯丙氨酸的培养基并且相对于Phe→m-Tyr错误并入的蛋白质序列最终精确度高于或等于99.5%。One aspect as reported herein is a culture medium comprising m-tyrosine and phenylalanine in a molar ratio lower than or equal to 0.125. One aspect as reported herein is a culture medium comprising m-tyrosine and phenylalanine in a molar ratio lower than or equal to 0.125 and a final accuracy of the protein sequence with respect to Phe→m-Tyr misincorporation higher than or equal to 99.5%.
如本文中报道的一个方面是以低于或等于0.025的摩尔比包含间-酪氨酸和苯丙氨酸的培养基。如本文中报道的一个方面是以低于或等于0.025的摩尔比包含间-酪氨酸和苯丙氨酸的培养基并且相对于Phe→m-Tyr错误并入的蛋白质序列最终精确度高于或等于99.9%。One aspect as reported herein is a culture medium comprising m-tyrosine and phenylalanine in a molar ratio lower than or equal to 0.025. One aspect as reported herein is a culture medium comprising m-tyrosine and phenylalanine in a molar ratio lower than or equal to 0.025 and a final accuracy of the protein sequence with respect to Phe→m-Tyr misincorporation higher than or equal to 99.9%.
在这个方面的一个实施方案中,培养基是无蛋白质的培养基。在这个方面的一个实施方案中,培养基是化学定义的培养基。在这个方面的一个实施方案中,培养基是无蛋白质的化学定义的培养基。In one embodiment of this aspect, the culture medium is a protein-free culture medium. In one embodiment of this aspect, the culture medium is a chemically defined culture medium. In one embodiment of this aspect, the culture medium is a protein-free chemically defined culture medium.
发明的详细描述Detailed Description of the Invention
认为调节真核细胞的比生产率(qP)是解决产品质量属性(如蛋白质N-糖基化微观不均一性、电荷变体、蛋白质聚集物和片段特征)改变的有力工具。例如,假定中等qP支持翻译后N-糖基化,原因是目标蛋白可以在聚糖形成区室即内质网(ER)和高尔基体具有较长停留时间(Hossler等人,2009)。Modulating the specific productivity (qP) of eukaryotic cells is considered a powerful tool to address changes in product quality attributes such as protein N-glycosylation microheterogeneity, charge variants, protein aggregates, and fragment characteristics. For example, a moderate qP is assumed to favor post-translational N-glycosylation because the target protein can have a longer residence time in the glycan-forming compartments, namely the endoplasmic reticulum (ER) and the Golgi apparatus (Hossler et al., 2009).
目前,生物技术实践中通过药物如组蛋白脱乙酰酶(HDAC)抑制剂丙戊酸和丁酸钠(Lee等人,2009;Murray-Beaulieu等人,2009)或通过化学-物理参数如温度变换(Hendrick等人,2001)、pH变换(Yoon等人,2005)和增加重量摩尔渗透压浓度(Han等人,2009),实现对qP的调节。这些方案具有明显缺点。HDAC抑制剂在一方面严重降低细胞成活力并诱导凋亡,这可能造成次生问题如目标蛋白片段化和在蛋白质纯化期间宿主细胞蛋白和DNA清除不良。在另一方面,化学-物理参数难以在GMP设施中控制并且经常因容器限制和不同传质(mass transfer)而在不同生物反应器的变换动力学方面变动。本文中报道了向生物技术工艺特别补充间-酪氨酸是一个在不影响细胞成活力和不需要化学物理调节情况下增加真核细胞qP、尤其CHO细胞qP的有前景的现有工艺替代项。Currently, qP regulation is achieved in biotechnological practice through drugs such as the histone deacetylase (HDAC) inhibitors valproic acid and sodium butyrate (Lee et al., 2009; Murray-Beaulieu et al., 2009) or through chemo-physical parameters such as temperature shifts (Hendrick et al., 2001), pH shifts (Yoon et al., 2005), and increased osmolality (Han et al., 2009). These approaches have significant drawbacks. On the one hand, HDAC inhibitors severely reduce cell viability and induce apoptosis, which can lead to secondary problems such as target protein fragmentation and poor clearance of host cell proteins and DNA during protein purification. On the other hand, chemo-physical parameters are difficult to control in GMP facilities and often vary in terms of transfer kinetics between different bioreactors due to vessel limitations and different mass transfer. Here, we report that the specific supplementation of biotechnological processes with m-tyrosine is a promising alternative to existing processes for increasing qP in eukaryotic cells, particularly CHO cells, without affecting cell viability and without the need for chemo-physical regulation.
但是,Gurer-Orhan等人,(2006)已经报道,某些水平的间-酪氨酸浓度在贴壁生长的CHO细胞中诱导细胞毒效应。However, Gurer-Orhan et al., (2006) have reported that certain levels of meta-tyrosine concentration induce cytotoxic effects in adherently grown CHO cells.
如本文中报道的本发明至少部分地基于以下观察结果:用间-酪氨酸补充培养基导致产生外源多肽的真核悬浮细胞、尤其CHO悬浮细胞的比生产率(qP)增加。The invention as reported herein is based at least in part on the observation that supplementation of the culture medium with meta-tyrosine leads to an increase in the specific productivity (qP) of eukaryotic suspension cells, in particular CHO suspension cells, producing exogenous polypeptides.
与Gurer-Orhan等人的观察结果相反,添加间-酪氨酸不导致细胞毒效应(即细胞成活力和终产物滴度未受显著影响,不过细胞生长以不利方式受到影响,如可以依据降低的活细胞密度(VCD)和总生物量产生(如CTI所指示)见到(参见图1至图5)。In contrast to the observations of Gurer-Orhan et al., addition of meta-tyrosine did not result in a cytotoxic effect (i.e., cell viability and final product titer were not significantly affected), although cell growth was adversely affected, as can be seen from the reduced viable cell density (VCD) and total biomass production (as indicated by CTI) (see Figures 1 to 5).
因此,如本文中报道的一个方面是间-酪氨酸增加产生多肽的真核宿主细胞的比生产率的用途。Thus, one aspect as reported herein is the use of meta-tyrosine to increase the specific productivity of a polypeptide producing eukaryotic host cell.
如本文中报道的一个方面是一种在表达编码多肽的核酸的真核宿主细胞中产生多肽的方法,所述方法包括在包含间-酪氨酸的培养基中培养真核宿主细胞。One aspect as reported herein is a method for producing a polypeptide in a eukaryotic host cell expressing a nucleic acid encoding the polypeptide, the method comprising culturing the eukaryotic host cell in a culture medium comprising meta-tyrosine.
在全部方面的一个实施方案中,真核宿主细胞是哺乳动物细胞。在一个实施方案中,哺乳动物细胞选自以下哺乳动物细胞,包括CHO细胞(例如CHO-K1或CHO DG44)、BHK细胞、NS0细胞、SP2/0细胞、HEK 293细胞、HEK 293EBNA细胞、PER.C6细胞和COS细胞。在全部方面的一个实施方案中,哺乳动物细胞是中国仓鼠卵巢(CHO)细胞。在全部方面的一个实施方案中,CHO细胞是CHO悬浮细胞。在全部方面的一个实施方案中,CHO细胞是CHO-K1细胞。In one embodiment of all aspects, the eukaryotic host cell is a mammalian cell. In one embodiment, the mammalian cell is selected from the group consisting of CHO cells (e.g., CHO-K1 or CHO DG44), BHK cells, NSO cells, SP2/0 cells, HEK 293 cells, HEK 293EBNA cells, PER.C6 cells, and COS cells. In one embodiment of all aspects, the mammalian cell is a Chinese hamster ovary (CHO) cell. In one embodiment of all aspects, the CHO cell is a CHO suspension cell. In one embodiment of all aspects, the CHO cell is a CHO-K1 cell.
已经发现可以在添加至培养基的间-酪氨酸的某个浓度范围实现比生产率的增加。It has been found that an increase in specific productivity can be achieved within a certain concentration range of meta-tyrosine added to the culture medium.
在全部方面的一个实施方案中,添加间-酪氨酸以产生0.2mM至0.7mM的浓度。在全部方面的一个实施方案中,添加间-酪氨酸以产生0.25mM至0.6mM的浓度。在全部方面的一个实施方案中,添加间-酪氨酸以产生0.3mM至0.5mM的浓度。在全部方面的一个实施方案中,添加间-酪氨酸以产生0.3mM至0.4mM的浓度。In one embodiment of all aspects, m-tyrosine is added to produce a concentration of 0.2 mM to 0.7 mM. In one embodiment of all aspects, m-tyrosine is added to produce a concentration of 0.25 mM to 0.6 mM. In one embodiment of all aspects, m-tyrosine is added to produce a concentration of 0.3 mM to 0.5 mM. In one embodiment of all aspects, m-tyrosine is added to produce a concentration of 0.3 mM to 0.4 mM.
在全部方面的一个实施方案中,与不补充间-酪氨酸的相同生产过程相比,比生产率增加了至少5%。在全部方面的一个实施方案中,与不补充间-酪氨酸的相同生产过程相比,比生产率增加了至少10%。在全部方面的一个实施方案中,与不补充间-酪氨酸的相同生产过程相比,比生产率增加了至少20%。在全部方面的一个实施方案中,与不补充间-酪氨酸的相同生产过程相比,比生产率增加了至少25%。In one embodiment of all aspects, the specific productivity is increased by at least 5% compared to the same production process without meta-tyrosine supplementation. In one embodiment of all aspects, the specific productivity is increased by at least 10% compared to the same production process without meta-tyrosine supplementation. In one embodiment of all aspects, the specific productivity is increased by at least 20% compared to the same production process without meta-tyrosine supplementation. In one embodiment of all aspects, the specific productivity is increased by at least 25% compared to the same production process without meta-tyrosine supplementation.
已经发现为了实现增加的比生产率,不需要进行温度变换、重量摩尔渗透压浓度变换或pH变换,并且也不需要添加药物如丙戊酸或丁酸钠调节比生产率,如本领域中报道。然而,本领域技术人员理解,也可以额外地在如本文报道的方法中进行/包括对培养过程的这些调整。It has been found that in order to achieve increased specific productivity, no temperature shift, osmolality shift or pH shift is required, and no addition of drugs such as valproic acid or sodium butyrate is required to adjust the specific productivity, as reported in the art. However, it will be appreciated by those skilled in the art that these adjustments to the culture process may also be additionally performed/included in the method as reported herein.
在全部方面的一个实施方案中,在恒定温度进行所述使用或方法。在全部方面的一个实施方案中,在使用过程中以降低的温度进行所述使用或方法。In one embodiment of all aspects, the use or method is performed at a constant temperature.In one embodiment of all aspects, the use or method is performed at a reduced temperature during use.
在全部方面的一个实施方案中,在恒定的pH进行所述使用或方法。In one embodiment of all aspects the use or method is performed at a constant pH.
通过额外输入非限制性浓度的苯丙氨酸控制因翻译期间添加间-酪氨酸至培养基时可能出现的替代性氨基酸错误并入所致的可能氨基酸序列变体(SV)。Potential amino acid sequence variants (SVs) due to misincorporation of alternative amino acids that may occur when meta-tyrosine is added to the culture medium during translation were controlled by the additional input of non-limiting concentrations of phenylalanine.
在表1中,显示示踪肽的Phe→xTyr(x意指间-Tyr和/或邻-Tyr)序列变体形成数量/频率/分数(在第14天补充0.1mM、0.3mM和0.4mM邻-Tyr和间-Tyr时Phe→xTyr错误并入的最大水平)。In Table 1 , the number/frequency/score of Phe→xTyr (x means meta-Tyr and/or ortho-Tyr) sequence variant formation of the tracer peptides is shown (maximum levels of Phe→xTyr misincorporation at day 14 when supplemented with 0.1 mM, 0.3 mM and 0.4 mM ortho-Tyr and meta-Tyr).
从补充实验的上清液间-Tyr、邻-Tyr和L-Phe以及相应Phe→xTyr错误并入的数据,可以计算出间-Tyr/Phe和邻-Tyr/Phe的阈值比率,所述比率导致99.9%、99.5%、99.0%和95.0%的所产生序列最终精确度(指邻-Tyr和间-Tyr错误并入)。From the data of supernatant meta-Tyr, o-Tyr and L-Phe and the corresponding Phe→xTyr misincorporation from the supplementation experiments, threshold ratios of meta-Tyr/Phe and o-Tyr/Phe were calculated that resulted in a final accuracy of the generated sequences of 99.9%, 99.5%, 99.0% and 95.0% (referring to o-Tyr and meta-Tyr misincorporation).
表1Table 1
已经发现,培养基中调节的间Tyr/Phe最大阈值比率1.25、0.25、0.125或0.025可以在产生的多肽中控制/避免不想要的SV(分别具有95.0%、99.0%、99.5%或99.9%序列精确度),同时比生产率增加。无论是否进行额外的Phe补充,比生产率仍增加(参见图8)。It has been found that adjusting the maximum threshold ratio of Tyr/Phe in the culture medium to 1.25, 0.25, 0.125 or 0.025 can control/avoid unwanted SV in the produced polypeptides (with 95.0%, 99.0%, 99.5% or 99.9% sequence accuracy, respectively) while increasing specific productivity. The specific productivity was increased regardless of whether additional Phe supplementation was performed (see Figure 8).
在全部方面的一个实施方案中,培养基以非限制性浓度额外包含苯丙氨酸。In one embodiment of all aspects the culture medium additionally comprises phenylalanine at non-limiting concentrations.
在全部方面的一个实施方案中,间-酪氨酸/苯丙氨酸的摩尔比低于或等于1.25。在全部方面的一个实施方案中,相对于Phe→m-Tyr错误并入的蛋白质序列最终精确度高于或等于95.0%。在这个方面的一个实施方案中,间-酪氨酸/苯丙氨酸的摩尔比低于或等于1.25并且相对于Phe→m-Tyr错误并入的蛋白质序列最终精确度高于或等于95.0%。In one embodiment of all aspects, the molar ratio of m-Tyrosine/Phenylalanine is lower than or equal to 1.25. In one embodiment of all aspects, the final accuracy relative to the protein sequence of Phe→m-Tyr misincorporation is higher than or equal to 95.0%. In one embodiment of this aspect, the molar ratio of m-Tyrosine/Phenylalanine is lower than or equal to 1.25 and the final accuracy relative to the protein sequence of Phe→m-Tyr misincorporation is higher than or equal to 95.0%.
在全部方面的一个实施方案中,间-酪氨酸/苯丙氨酸的摩尔比低于或等于0.25。在全部方面的一个实施方案中,相对于Phe→m-Tyr错误并入的蛋白质序列最终精确度高于或等于99.0%。在这个方面的一个实施方案中,间-酪氨酸/苯丙氨酸的摩尔比低于或等于1.25并且相对于Phe→m-Tyr错误并入的蛋白质序列最终精确度高于或等于99.0%。In one embodiment of all aspects, the molar ratio of m-Tyrosine/Phenylalanine is lower than or equal to 0.25. In one embodiment of all aspects, the final accuracy relative to the protein sequence of Phe→m-Tyr misincorporation is higher than or equal to 99.0%. In one embodiment of this aspect, the molar ratio of m-Tyrosine/Phenylalanine is lower than or equal to 1.25 and the final accuracy relative to the protein sequence of Phe→m-Tyr misincorporation is higher than or equal to 99.0%.
在全部方面的一个实施方案中,间-酪氨酸/苯丙氨酸的摩尔比低于或等于0.125。在这个方面的一个实施方案中,相对于Phe→m-Tyr错误并入的蛋白质序列最终精确度高于或等于99.5%。在这个方面的一个实施方案中,间-酪氨酸/苯丙氨酸的摩尔比低于或等于1.25并且相对于Phe→m-Tyr错误并入的蛋白质序列最终精确度高于或等于99.5%。In one embodiment of all aspects, the molar ratio of m-Tyrosine/Phenylalanine is lower than or equal to 0.125. In one embodiment of this aspect, the final accuracy relative to the protein sequence of Phe→m-Tyr misincorporation is higher than or equal to 99.5%. In one embodiment of this aspect, the molar ratio of m-Tyrosine/Phenylalanine is lower than or equal to 1.25 and the final accuracy relative to the protein sequence of Phe→m-Tyr misincorporation is higher than or equal to 99.5%.
在全部方面的一个实施方案中,间-酪氨酸/苯丙氨酸的摩尔比低于或等于0.025。在这个方面的一个实施方案中,相对于Phe→m-Tyr错误并入的蛋白质序列最终精确度高于或等于99.9%。在这个方面的一个实施方案中,间-酪氨酸/苯丙氨酸的摩尔比低于或等于1.25并且相对于Phe→m-Tyr错误并入的蛋白质序列最终精确度高于或等于99.9%。In one embodiment of all aspects, the molar ratio of m-Tyrosine/Phenylalanine is less than or equal to 0.025. In one embodiment of this aspect, the final accuracy relative to the protein sequence of Phe→m-Tyr misincorporation is greater than or equal to 99.9%. In one embodiment of this aspect, the molar ratio of m-Tyrosine/Phenylalanine is less than or equal to 1.25 and the final accuracy relative to the protein sequence of Phe→m-Tyr misincorporation is greater than or equal to 99.9%.
定义definition
如本文所用的“生物量”指培养基中培养的细胞的量或重量。可以通过确定活细胞密度、总细胞密度、(相对于活细胞密度和总细胞密度的)细胞时间积分、(相对于活细胞密度和总细胞密度的)细胞体积时间积分、细胞压积、干重或湿重直接或间接地测量生物量。As used herein, "biomass" refers to the amount or weight of cells cultured in a culture medium. Biomass can be measured directly or indirectly by determining viable cell density, total cell density, cell time integral (relative to viable cell density and total cell density), cell volume time integral (relative to viable cell density and total cell density), packed cell volume, dry weight, or wet weight.
如本文所用的“生物反应器”指用于哺乳动物细胞培养物生长的任何容器。一般地,生物反应器将至少是1升并且可以是10、100、250、500、1000、2500、5000、8000、10000、12000升或更大或它们之间的任何体积。生物反应器的内部条件包括但不限于pH、溶解氧和温度,一般在培养时间期间控制。生物反应器可以包括适于容纳在本发明的培养条件下悬浮于培养基中的哺乳动物细胞培养物任何材料,所述材料包括玻璃、塑料或金属。As used herein, "bioreactor" refers to any container for growing mammalian cell cultures. Typically, a bioreactor will be at least 1 liter and can be 10, 100, 250, 500, 1000, 2500, 5000, 8000, 10,000, 12,000 liters or larger or any volume therebetween. The internal conditions of the bioreactor include, but are not limited to, pH, dissolved oxygen, and temperature, which are generally controlled during the incubation time. The bioreactor can comprise any material suitable for accommodating mammalian cell cultures suspended in the culture medium under the culture conditions of the present invention, including glass, plastic, or metal.
如本文所用的“细胞密度”指在给定培养基体积中存在的细胞数目。As used herein, "cell density" refers to the number of cells present in a given volume of culture medium.
“细胞成活力”指相对于特定时间处培养物中活和死细胞总数而言在该时间活着的细胞的部分。"Cell viability" refers to the fraction of cells that are alive at a particular time relative to the total number of live and dead cells in culture at that time.
术语“细胞培养物”指在转瓶、烧瓶、玻璃或不锈钢培养容器等中以悬浮或贴壁方式生长的细胞。术语“细胞培养物”还涵盖大规模方案,如生物反应器。本发明涵盖用于大规模和小规模产生多肽的细胞培养方法。可以使用和备选地以分批、分瓶分批(split-batch)、补料分批或灌流模式运行多种方法,所述方法包括但不限于流化床生物反应器、摇瓶培养或搅拌罐生物反应器系统。The term "cell culture" refers to cells grown in suspension or adherently in roller bottles, flasks, glass or stainless steel culture vessels, and the like. The term "cell culture" also encompasses large-scale protocols, such as bioreactors. The present invention encompasses cell culture methods for large-scale and small-scale production of polypeptides. Various methods can be used and alternatively run in batch, split-batch, fed-batch, or perfusion modes, including but not limited to fluidized bed bioreactors, shake flask cultures, or stirred tank bioreactor systems.
如本发明内部可互换使用的术语“细胞培养基”、“培养用培养基”或“培养基”指用于生长哺乳动物细胞的营养液。这种营养液通常包括对于生长和维持细胞环境必需的多种因子。例如,常见的营养液可以包括基础培养基制剂、取决于培养类型和偶而取决于选择剂的多种补充物。一般地,这类溶液提供细胞最低生长和/或存活所需要的必需氨基酸和非必需氨基酸、维生素、能量源、脂质和痕量元素。这种溶液还可以含有增强生长和/或存活高于最低速率的补充性组分,包括但不限于激素和/或其他生长因子、特定离子如钠、氯、钙、镁和磷酸盐、缓冲组分、维生素、核苷或核苷酸、痕量元素、氨基酸、脂质和/或葡萄糖或其他能量源。培养基有利地配制为对细胞存活和增殖最佳的pH和盐浓度。培养基可以是无蛋白质的培养基,即这种培养基将不含全长蛋白质,而将含有未限定的肽,例如来自植物水解物的肽。培养基可以包含人血清白蛋白和人转铁蛋白,但潜在地包含动物衍生的胰岛素和脂质,或含有人血清白蛋白、人转铁蛋白、人胰岛素和化学限定脂质的无外来物培养基(xeno-free medium)。备选地,培养基可以是化学成分确知的培养基,即其中全部物质均确定并且以确定浓度存在的培养基。这些培养基可以仅含有重组蛋白和/或激素或无蛋白质的化学成分确知培养基,即如果需要,仅含有低分子量组分和合成肽/激素。化学成分确知的培养基还可能完全不含任何蛋白质。As used interchangeably within the present invention, the terms "cell culture medium," "culture medium," or "culture medium" refer to a nutrient solution for growing mammalian cells. Such nutrient solutions typically include a variety of factors necessary for growth and maintaining a cellular environment. For example, common nutrient solutions can include basal medium formulations, a variety of supplements depending on the type of culture, and occasionally a selection agent. Generally, such solutions provide the essential and non-essential amino acids, vitamins, energy sources, lipids, and trace elements required for minimum cell growth and/or survival. Such solutions may also contain supplementary components that enhance growth and/or survival above the minimum rate, including but not limited to hormones and/or other growth factors, specific ions such as sodium, chloride, calcium, magnesium, and phosphate, buffering components, vitamins, nucleosides or nucleotides, trace elements, amino acids, lipids, and/or glucose or other energy sources. The culture medium is advantageously formulated to an optimal pH and salt concentration for cell survival and proliferation. The culture medium may be a protein-free medium, meaning that the culture medium will not contain full-length proteins but will contain undefined peptides, such as peptides from plant hydrolysates. The culture medium may comprise human serum albumin and human transferrins, but potentially comprise animal-derived insulin and lipids, or contain xeno-free medium containing human serum albumin, human transferrins, human insulin and chemically defined lipids. Alternatively, the culture medium may be a chemically known culture medium, i.e., a culture medium in which all substances are determined and present at a determined concentration. These culture media may contain only recombinant proteins and/or hormones or protein-free chemically known culture media, i.e., if desired, only contain low molecular weight components and synthetic peptides/hormones. Chemically known culture media may also be completely free of any protein.
术语“细胞”或“宿主细胞”指可以向其中引入/转染核酸(例如编码异源多肽的核酸)的细胞。宿主细胞包括用于增殖载体/质粒的原核细胞和用于表达核酸的真核细胞。在一个实施方案中,真核细胞是哺乳动物细胞。在另一个实施方案中,哺乳动物宿主细胞选自以下哺乳动物细胞,包括CHO细胞(例如CHO-K1或CHO DG44)、BHK细胞、NS0细胞、SP2/0细胞、HEK 293细胞、HEK 293EBNA细胞、PER.C6细胞和COS细胞。为了宿主细胞发酵并且因此为了表达目的多肽,使用培养基。通常,CHO细胞广泛用于以小规模在实验室中或以大规模在生产过程中表达药物多肽。归因于其广泛分布和使用,CHO细胞的特征性属性和遗传背景是熟知的。因此,CHO细胞由监管当局批准用来生产用于人类的治疗性蛋白。在一个实施方案中,哺乳动物细胞是CHO细胞。在一个实施方案中,哺乳动物细胞是CHO悬浮细胞系/以悬浮方式生长的CHO细胞系。The term "cell" or "host cell" refers to a cell into which a nucleic acid (e.g., a nucleic acid encoding a heterologous polypeptide) can be introduced/transfected. Host cells include prokaryotic cells for propagating vectors/plasmids and eukaryotic cells for expressing nucleic acids. In one embodiment, the eukaryotic cell is a mammalian cell. In another embodiment, the mammalian host cell is selected from the following mammalian cells, including CHO cells (e.g., CHO-K1 or CHO DG44), BHK cells, NSO cells, SP2/0 cells, HEK 293 cells, HEK 293EBNA cells, PER.C6 cells, and COS cells. For host cell fermentation and therefore for expressing the target polypeptide, culture medium is used. Typically, CHO cells are widely used to express pharmaceutical polypeptides in the laboratory or on a large scale during production. Due to its widespread distribution and use, the characteristic properties and genetic background of CHO cells are well known. Therefore, CHO cells are approved by regulatory authorities for the production of therapeutic proteins for humans. In one embodiment, the mammalian cell is a CHO cell. In one embodiment, the mammalian cell is a CHO suspension cell line/a CHO cell line grown in suspension.
本发明的方法适用于以大规模即产业方式生产分泌型异源多肽。The method of the present invention is suitable for producing secreted heterologous polypeptides on a large scale, ie, in an industrial manner.
用来以大规模生产所需多肽的细胞的培养通常由一系列独立培养组成,其中除最终培养(即大规模培养,即这个系列中的最后一个培养)之外的全部培养均进行直至培养容器中达到某个细胞密度。如果预定的细胞密度达到,则整个培养物或其级分用来接种下一个培养容器,所述培养物具有更大的体积,其体积至多100倍于先前的培养物。以更大体积充当至少一个进一步培养之基础的全部培养称作“种子发酵”或“种子培养”。仅在大规模培养中,即在不意在以更大体积充当进一步培养之基础的培养(又称作“主要发酵”)中才有根据培养基或培养时间中产生的分泌型异源免疫球蛋白的浓度所确定的培养终点。如本申请中使用的术语“大规模”指工业生产过程的最终培养。在一个实施方案中,大规模培养以至少100升体积、在另一个实施方案中以至少500升、在又一个实施方案中以至少1000升体积直至25,000升体积进行。在一个实施方案中,最终(即大规模)培养基不含真核选择剂。The cultivation of cells used to produce the desired polypeptide on a large scale generally consists of a series of independent cultivations, wherein all cultivations except the final cultivation (i.e., large-scale cultivation, i.e., the last cultivation in this series) are carried out until a certain cell density is reached in the culture vessel. If the predetermined cell density is reached, the entire culture or its fraction is used to inoculate the next culture vessel, which has a larger volume, which is at most 100 times that of the previous culture. The entire cultivation that serves as the basis for at least one further cultivation with a larger volume is called a "seed fermentation" or "seed culture". Only in large-scale cultivation, i.e., in a cultivation that is not intended to serve as the basis for further cultivation with a larger volume (also known as a "main fermentation"), is there a cultivation endpoint determined by the concentration of secretory heterologous immunoglobulin produced in the culture medium or during the cultivation time. As used in this application, the term "large-scale" refers to the final cultivation of an industrial production process. In one embodiment, large-scale cultivation is carried out in a volume of at least 100 liters, in another embodiment in a volume of at least 500 liters, and in another embodiment in a volume of at least 1000 liters up to 25,000 liters. In one embodiment, the final (i.e., large-scale) culture medium does not contain a eukaryotic selection agent.
如本文所用的“分瓶(splitting)”又称作细胞的传代或继代培养。这包括将小数目的细胞转移入新鲜的培养基,从而分瓶的细胞接种所述新的培养物。在悬浮培养物中,含有一些细胞的少量培养物稀释于更大体积的新鲜培养基中。As used herein, "splitting" is also known as passaging or subculturing cells. This involves transferring a small number of cells into fresh culture medium, thereby inoculating the new culture with the split cells. In suspension cultures, a small amount of culture containing some cells is diluted into a larger volume of fresh culture medium.
如本文所用的“滴度”指由给定量的培养基体积中哺乳动物细胞培养物产生的重组表达的多肽总量。滴度一般以如下单位表述:毫克多肽/毫升培养基。As used herein, "titer" refers to the total amount of recombinantly expressed polypeptide produced by mammalian cell culture in a given volume of culture medium. Titer is generally expressed in units of: mg polypeptide/ml culture medium.
“基因”指作为例如染色体上或质粒上可以实现肽、多肽或蛋白质表达的区段的核酸。在编码区(即结构基因)旁边,基因包含其他功能性元件,例如信号序列、启动子、内含子和/或终止子。"Gene" refers to a nucleic acid that is a segment that can express a peptide, polypeptide or protein, such as on a chromosome or on a plasmid. Beside the coding region (i.e., structural gene), the gene contains other functional elements, such as signal sequences, promoters, introns and/or terminators.
“结构基因”指无信号序列的基因区域,即编码区。"Structural gene" refers to the region of a gene without a signal sequence, ie, the coding region.
如本文所用,术语“表达”指细胞内部出现的转录和/或翻译。宿主细胞中目的产物的转录水平可以基于细胞中存在的相应mRNA的量确定。例如,从选定核酸转录的mRNA可以通过PCR或通过RNA印迹杂交定量(参见Sambrook等人,Molecular Cloning:A LaboratoryManual,Cold Spring Harbor Laboratory Press(1989))。由选定核酸编码的蛋白质可以通过多种方法定量,例如通过ELISA、通过测定该蛋白质的生物学活性或通过使用识别并结合于该蛋白质的抗体,采用与这类活性无关的测定法(如蛋白质印迹法或放射免疫测定法)定量(参见Sambrook等人,1989,上文)。As used herein, the term "expression" refers to transcription and/or translation occurring inside a cell. The transcription level of the target product in a host cell can be determined based on the amount of the corresponding mRNA present in the cell. For example, mRNA transcribed from a selected nucleic acid can be quantified by PCR or by Northern blot hybridization (see Sambrook et al., Molecular Cloning: A Laboratory Manual, Cold Spring Harbor Laboratory Press (1989)). The protein encoded by the selected nucleic acid can be quantified by a variety of methods, such as by ELISA, by measuring the biological activity of the protein, or by using antibodies that recognize and bind to the protein, using an assay method (such as Western blotting or radioimmunoassay) that is unrelated to this type of activity and is quantified (see Sambrook et al., 1989, above).
术语“多肽”是由肽键接合的氨基酸残基组成的聚合物,无论是否为天然或合成地产生。少于约20个氨基酸残基的多肽可以作“肽”。包含两条或更多条氨基酸链或包含长度为100个氨基酸或更大的氨基酸链的多肽可以称作“蛋白质”。多肽或蛋白质还可以包含非肽组分,如糖基团或金属离子。糖和其他非肽取代基可以由产生该蛋白质的细胞添加至该蛋白质,并且可以随细胞的类型变动。蛋白质和多肽在本文中根据它们的氨基酸主链结构定义;附加物如糖基团通常不指明,然而可以存在。在一个实施方案中,多肽是免疫球蛋白或免疫球蛋白片段或免疫球蛋白缀合物。在一个实施方案中,多肽是免疫球蛋白重链或免疫球蛋白轻链或片段、其融合物或缀合物。“外源”或“非内源”多肽是不源自所用宿主细胞内部的多肽。The term "polypeptide" is a polymer composed of amino acid residues joined by peptide bonds, whether naturally or synthetically produced. A polypeptide having fewer than about 20 amino acid residues may be referred to as a "peptide." A polypeptide comprising two or more amino acid chains or comprising amino acid chains of 100 amino acids or more in length may be referred to as a "protein." A polypeptide or protein may also contain non-peptide components, such as sugar groups or metal ions. Sugars and other non-peptide substituents may be added to the protein by the cell producing the protein and may vary with the type of cell. Proteins and polypeptides are defined herein according to their amino acid backbone structure; appendages such as sugar groups are not generally specified, but may be present. In one embodiment, the polypeptide is an immunoglobulin or immunoglobulin fragment or immunoglobulin conjugate. In one embodiment, the polypeptide is an immunoglobulin heavy chain or immunoglobulin light chain or fragment, a fusion or conjugate thereof. An "exogenous" or "non-endogenous" polypeptide is a polypeptide that does not originate from within the host cell used.
如本文所用的术语“核酸”是由独立核苷酸组成的聚合物,即多核苷酸。它指天然存在的核酸或部分或完全非天然存在的核酸,所述核酸例如编码可以重组产生的多肽。核酸可以由分离的或通过化学手段合成的DNA片段构成。核酸可以整合至另一个核酸中,例如整合在宿主细胞的表达质粒或基因组/染色体中。质粒包括穿梭载体和表达载体。一般地,质粒也将包含原核增殖单元,其包含分别用于细菌中复制和选择载体的复制起点(例如ColE1复制起点)和选择标记(例如氨苄青霉素或四环素抗性基因)。As used herein, the term "nucleic acid" is a polymer composed of independent nucleotides, i.e., a polynucleotide. It refers to naturally occurring nucleic acids or partially or completely non-naturally occurring nucleic acids, which, for example, encode polypeptides that can be recombinantly produced. Nucleic acids can be composed of isolated or chemically synthesized DNA fragments. Nucleic acids can be integrated into another nucleic acid, for example, into an expression plasmid or genome/chromosome of a host cell. Plasmids include shuttle vectors and expression vectors. Generally, plasmids will also include a prokaryotic propagation unit comprising a replication origin (e.g., ColE1 replication origin) and a selectable marker (e.g., ampicillin or tetracycline resistance gene) for replication and selection of vectors in bacteria, respectively.
术语“免疫球蛋白”指包含至少两个所谓轻链多肽(轻链)和两个所谓重链多肽(重链)的分子。每个重链多肽和轻链多肽包含可变结构域(可变区)(通常是多肽链的氨基端部分),所述可变结构域包含能够与抗原相互作用的结合区。每个重链多肽和轻链多肽还包含恒定区(通常是羧基端部分)。重链的恒定区介导免疫球蛋白i)与携带Fcγ受体(FcγR)的细胞(如吞噬细胞)或ii)与携带新生儿Fc受体(FcRn)(也称作Brambell受体)的细胞结合。它还介导与某些因子的结合,包括经典补体系统的因子如组分C1q。The term "immunoglobulin" refers to a molecule comprising at least two so-called light chain polypeptides (light chain) and two so-called heavy chain polypeptides (heavy chain). Each heavy chain polypeptide and light chain polypeptide comprises a variable domain (variable region) (usually the amino-terminal portion of the polypeptide chain), which comprises a binding region capable of interacting with an antigen. Each heavy chain polypeptide and light chain polypeptide also comprises a constant region (usually the carboxyl-terminal portion). The constant region of the heavy chain mediates the binding of the immunoglobulin i) to cells (such as phagocytes) carrying Fc gamma receptors (FcγRs) or ii) to cells carrying the neonatal Fc receptor (FcRn) (also known as the Brambell receptor). It also mediates binding to certain factors, including factors of the classical complement system such as component C1q.
术语“免疫球蛋白”在本文中以最广意义使用并且涵盖多种免疫球蛋白结构物,包括但不限于单克隆抗体、多克隆抗体、多特异性抗体(例如,双特异性抗体)和免疫球蛋白片段,只要它们显示出所需的抗原结合活性即可。The term "immunoglobulin" is used herein in the broadest sense and encompasses a variety of immunoglobulin structures, including but not limited to monoclonal antibodies, polyclonal antibodies, multispecific antibodies (e.g., bispecific antibodies), and immunoglobulin fragments, so long as they exhibit the desired antigen-binding activity.
取决于重链恒定区的氨基酸序列,将免疫球蛋白划分为不同类别:IgA类、IgD类、IgE类、IgG类和IgM类。这些类别中的某些类别进一步划分成亚类(同种型),即IgG的IgG1、IgG2、IgG3和IgG4,或IgA的IgA1和IgA2。根据免疫球蛋白所属的类别,重链恒定区分别称作α(IgA)、δ(IgD)、ε(IgE)、γ(IgG)和μ(IgM)。在一个实施方案中,免疫球蛋白是IgG类免疫球蛋白。在另一个实施方案中,免疫球蛋白具有人恒定区或衍生自人源的恒定区。在又一个实施方案中,免疫球蛋白属于IgG4亚类或IgG1、IgG2或IgG3亚类,所述抗体以这样的方式受到修饰,从而不能检测到Fcγ受体(例如FcγRIIIa)结合作用和/或C1q结合作用。在一个实施方案中,免疫球蛋白是人IgG4亚类或突变的人IgG1亚类。在一个实施方案中,免疫球蛋白是具有突变L234A和L235A的人IgG1亚类。在另一个实施方案中,就Fcγ受体结合作用而言,免疫球蛋白是IgG4亚类或IgG1或IgG2亚类,在L234、L235、和/或D265中具有突变,和/或含有PVA236突变。在又一个实施方案中,免疫球蛋白具有选自S228P、L234A、L235A、L235E、SPLE(S228P和L235E)和/或PVA236的突变(PVA236意指从IgG1的氨基酸位置233至236的氨基酸序列ELLG(按单字母氨基酸代码给出)或IgG4的EFLG由PVA替换)。在一个实施方案中,免疫球蛋白是IgG4亚类并且具有IgG4的突变S228P,或免疫球蛋白是IgG1亚类并且具有突变L234A和L235A。Depending on the amino acid sequence of the heavy chain constant region, immunoglobulins are divided into different classes: IgA, IgD, IgE, IgG, and IgM. Some of these classes are further divided into subclasses (isotypes), namely IgG1, IgG2, IgG3, and IgG4 for IgG, or IgA1 and IgA2 for IgA. Depending on the class to which the immunoglobulin belongs, the heavy chain constant region is referred to as α (IgA), δ (IgD), ε (IgE), γ (IgG), and μ (IgM), respectively. In one embodiment, the immunoglobulin is an IgG class immunoglobulin. In another embodiment, the immunoglobulin has a human constant region or a constant region derived from a human source. In yet another embodiment, the immunoglobulin belongs to the IgG4 subclass or the IgG1, IgG2, or IgG3 subclass, and the antibody is modified in such a way that Fcγ receptor (e.g., FcγRIIIa) binding and/or C1q binding cannot be detected. In one embodiment, the immunoglobulin is a human IgG4 subclass or a mutated human IgG1 subclass. In one embodiment, the immunoglobulin is of the human IgG1 subclass with mutations L234A and L235A. In another embodiment, for Fcγ receptor binding, the immunoglobulin is of the IgG4 subclass, or of the IgG1 or IgG2 subclass, with mutations in L234, L235, and/or D265, and/or contains the PVA236 mutation. In yet another embodiment, the immunoglobulin has a mutation selected from S228P, L234A, L235A, L235E, SPLE (S228P and L235E), and/or PVA236 (PVA236 means replacement of the amino acid sequence ELLG (given in the single-letter amino acid code) from amino acid positions 233 to 236 of IgG1 or EFLG of IgG4 with PVA). In one embodiment, the immunoglobulin is of the IgG4 subclass and has the IgG4 mutation S228P, or the immunoglobulin is of the IgG1 subclass and has the mutations L234A and L235A.
免疫球蛋白的轻链或重链的可变结构域转而包含不同区段,即4个构架区(FR)和3个高变区(CDR)。The variable domain of an immunoglobulin light or heavy chain in turn comprises different segments, namely four framework regions (FR) and three hypervariable regions (CDR).
“免疫球蛋白片段”指包含结构域群组的至少一个结构域的多肽,所述结构域群组包括免疫球蛋白重链的可变结构域、CH1结构域、铰链区、CH2结构域、CH3结构域、CH4结构域或免疫球蛋白轻链的可变结构域或CL结构域。还包括其衍生物及变体。额外地,可以存在可变结构域,其中缺失一个或多个氨基酸或氨基酸区域。An "immunoglobulin fragment" refers to a polypeptide comprising at least one domain from a group of domains, including the variable domain, CH1 domain, hinge region, CH2 domain, CH3 domain, CH4 domain, or the variable domain or CL domain of an immunoglobulin heavy chain. This also includes derivatives and variants thereof. Additionally, variable domains may contain one or more amino acids or amino acid regions deleted.
“免疫球蛋白缀合物”指借助肽键与其他多肽缀合的包含免疫球蛋白重链或轻链至少一个结构域的多肽。其他多肽是非免疫球蛋白肽,如激素、生长受体、抗融合肽(antifusogenic peptide)等。"Immunoglobulin conjugate" refers to a polypeptide comprising at least one domain of an immunoglobulin heavy chain or light chain conjugated to another polypeptide via a peptide bond. The other polypeptide is a non-immunoglobulin peptide, such as a hormone, growth receptor, antifusogenic peptide, etc.
如本文所用,“Phe非限制性”或“Phe非限制”浓度意指苯丙氨酸以过多的量输入,即始于第6日直至第14日每天用例如0.6mM Phe补充培养物。在不额外输入的情况下,截至第10或第11日,Phe通常将是限制性的(“Phe限制”)。可以通过连续输入或备选地通过发酵过程开始时或期间一次或多次独立推注Phe母液,添加苯丙氨酸补充物。As used herein, "Phe non-limiting" or "Phe non-limiting" concentration means that phenylalanine is fed in excess, i.e., the culture is supplemented with, for example, 0.6 mM Phe daily starting on day 6 until day 14. Without additional feeds, Phe will typically be limiting ("Phe limited") by day 10 or 11. Phenylalanine supplementation can be added by continuous feed or, alternatively, by one or more separate bolus injections of Phe stock solution at the beginning or during the fermentation process.
术语“增加的比生产率(specific productivity)”意指在本文所述的条件下,相应宿主细胞的比生产率相对于不补充间-酪氨酸的相同生产过程更高。作为细胞每日生产能力(产生的多肽/蛋白质的量,例如以皮克计)的测量,比生产率(qP)如实施例中所反映的那样计算。The term "increased specific productivity" means that, under the conditions described herein, the specific productivity of the corresponding host cells is higher relative to the same production process without the supplementation of meta-tyrosine. Specific productivity (qP) is calculated as reflected in the Examples as a measure of the daily production capacity of the cells (amount of polypeptide/protein produced, e.g., in picograms).
附图简述BRIEF DESCRIPTION OF THE DRAWINGS
图1间-Tyr调节Phe限制条件下的CHO生物量生成。(A)补料分批法,使用两种系列连续进料:进料1和进料2。在过程开始时,对CHO补料分批培养不补充(对照)、补充0.1mM、0.3mM或0.4mM对-Tyr、邻-Tyr或间-Tyr。作为CHO细胞生物量生成的测量,显示了对-Tyr(B)、邻-Tyr(C)和间-Tyr(D)补充的细胞时间积分(CTI)。Figure 1. Meta-Tyr regulates CHO biomass production under Phe-limited conditions. (A) Fed-batch process using two series of continuous feeds: Feed 1 and Feed 2. At the beginning of the process, CHO fed-batch cultures were not supplemented (control), supplemented with 0.1 mM, 0.3 mM, or 0.4 mM p-Tyr, o-Tyr, or m-Tyr. As a measure of CHO cell biomass production, the cell time integral (CTI) for p-Tyr (B), o-Tyr (C), and m-Tyr (D) supplementation is shown.
图2在Phe限制条件下间-Tyr和邻-Tyr在CHO细胞生长调节中的不同作用。显示对-Tyr(A)、邻-Tyr(B)和间-Tyr(C)补充的活细胞密度。显示不补充对-Tyr、邻-Tyr或间-Tyr的补料分批培养作为对照。Figure 2 shows the different roles of m-Tyr and o-Tyr in regulating CHO cell growth under Phe-limited conditions. Viable cell density is shown following supplementation with p-Tyr (A), o-Tyr (B), and m-Tyr (C). A fed-batch culture without supplementation with p-Tyr, o-Tyr, or m-Tyr is shown as a control.
图3在CHO补料分批培养中补充间-Tyr和邻-Tyr不改变Phe限制条件下的产物产率。显示对-Tyr(A)、邻-Tyr(B)和间-Tyr(C)补充的产物浓度。显示不补充对-Tyr、邻-Tyr或间-Tyr的补料分批培养作为对照。FIG3 : Supplementation of m-Tyr and o-Tyr in CHO fed-batch cultures does not alter product yields under Phe-limited conditions. Product concentrations are shown for p-Tyr (A), o-Tyr (B), and m-Tyr (C) supplementation. Fed-batch cultures without p-Tyr, o-Tyr, or m-Tyr supplementation are shown as controls.
图4在Phe限制条件下间-Tyr补充增加细胞特异性产物形成率qP。显示对-Tyr(A)、邻-Tyr(B)和间-Tyr(C)补充的细胞特异性产物形成率qP。显示不补充对-Tyr、邻-Tyr或间-Tyr的补料分批培养作为对照。Figure 4 shows that m-Tyr supplementation increases the cell-specific product formation rate qP under Phe-limiting conditions. The cell-specific product formation rate qP is shown for p-Tyr (A), o-Tyr (B), and m-Tyr (C) supplementation. A fed-batch culture without p-Tyr, o-Tyr, or m-Tyr supplementation is shown as a control.
图5间-Tyr和邻-Tyr对Phe限制条件下CHO细胞成活力的不同作用。显示对-Tyr(A、D)、邻-Tyr(B、E)和间-Tyr(C、F)补充的细胞成活力和上清液LDH活性。显示不补充对-Tyr、邻-Tyr或间-Tyr的补料分批培养作为对照。Figure 5 Differential effects of m-Tyr and o-Tyr on CHO cell viability under Phe-limited conditions. Cell viability and supernatant LDH activity are shown for cells supplemented with p-Tyr (A, D), o-Tyr (B, E), and m-Tyr (C, F). Fed-batch cultures without p-Tyr, o-Tyr, or m-Tyr supplementation are shown as controls.
图6间-Tyr调节Phe非限制条件下的CHO生物量生成。(A)补料分批法使用两种系列连续进料:进料1和高Phe浓度的进料2。在过程开始时,对CHO补料分批培养不补充(对照)、补充0.1mM、0.3mM或0.4mM对-Tyr、邻-Tyr或间-Tyr。作为CHO细胞生物量生成的测量,显示对-Tyr(B),邻-Tyr(C)和间-Tyr(D)补充的细胞时间积分(CTI)。Figure 6: Meta-Tyr regulates CHO biomass production under Phe-non-limiting conditions. (A) A fed-batch process uses two continuous feeds: Feed 1 and Feed 2 with a high Phe concentration. At the beginning of the process, CHO fed-batch cultures were not supplemented (control), supplemented with 0.1 mM, 0.3 mM, or 0.4 mM p-Tyr, o-Tyr, or m-Tyr. As a measure of CHO cell biomass production, the cell time integral (CTI) for p-Tyr (B), o-Tyr (C), and m-Tyr (D) supplementation is shown.
图7在CHO补料分批培养中补充间-Tyr和邻-Tyr不改变Phe非限制条件下的产物产率。显示对-Tyr(A)、邻-Tyr(B)和间-Tyr(C)补充的产物浓度。显示不补充对-Tyr、邻-Tyr或间-Tyr的补料分批培养作为对照。FIG7 : Supplementation of m-Tyr and o-Tyr in CHO fed-batch cultures does not alter product yields under Phe-non-limiting conditions. Product concentrations are shown for p-Tyr (A), o-Tyr (B), and m-Tyr (C) supplementation. Fed-batch cultures without p-Tyr, o-Tyr, or m-Tyr supplementation are shown as controls.
图8在Phe非限制条件下间-Tyr补充增加细胞特异性产物形成率qP。显示对-Tyr(A)、邻-Tyr(B)和间-Tyr(C)的细胞特异性产物形成率qP。显示不补充对-Tyr、邻-Tyr或间-Tyr的补料分批培养作为对照。Figure 8 shows that m-Tyr supplementation increases the cell-specific product formation rate qP under Phe-non-limiting conditions. The cell-specific product formation rate qP of p-Tyr (A), o-Tyr (B), and m-Tyr (C) is shown. A fed-batch culture without supplementation of p-Tyr, o-Tyr, or m-Tyr is shown as a control.
提供以下实施例和附图以辅助理解本发明,本发明的真实范围在所附权利要求书中阐述。可以理解,可以对所述方法作修改而不脱离本发明的精神。The following examples and figures are provided to aid the understanding of the present invention, the true scope of which is set forth in the appended claims. It is understood that modifications can be made to the procedures described without departing from the spirit of the invention.
试剂和材料Reagents and materials
从Sigma-Aldrich(慕尼黑,德国)获得DL-邻-酪氨酸(2-羟基-DL-苯丙氨酸)、DL-间-酪氨酸(3-羟基-DL-苯丙氨酸)、L-对-酪氨酸、L-苯丙氨酸和盐酸胍。L-邻-酪氨酸(2-羟基-L-苯丙氨酸)和L-间-酪氨酸(3-羟基-L-苯丙氨酸)购自RSP Amino Acids,LLC(Shirley,MA,USA)。全部其他试剂均购自Merck(达姆施塔特,德国)和Sigma-Aldrich(慕尼黑,德国)。DL-o-tyrosine (2-hydroxy-DL-phenylalanine), DL-m-tyrosine (3-hydroxy-DL-phenylalanine), L-p-tyrosine, L-phenylalanine, and guanidine hydrochloride were obtained from Sigma-Aldrich (Munich, Germany). L-o-tyrosine (2-hydroxy-L-phenylalanine) and L-m-tyrosine (3-hydroxy-L-phenylalanine) were purchased from RSP Amino Acids, LLC (Shirley, MA, USA). All other reagents were purchased from Merck (Darmstadt, Germany) and Sigma-Aldrich (Munich, Germany).
细胞和细胞培养Cells and cell culture
对于全部细胞培物实验,使用表达人源化单克隆抗体的重组CHO-K1细胞系,称作克隆1。使用L-蛋氨酸亚砜亚胺(L-methionine sulfoximine)敏感性CHO-K1宿主细胞系(Lonza,Cologne,德国)生成重组CHO-K1细胞系。在种子系列培养期间,将细胞在补充有50μM L-蛋氨酸亚砜亚胺(Sigma Aldrich,慕尼黑,德国)的无蛋白质、化学成分确知的CD-CHO培养基(Life Technologies,达姆施塔特,德国)中培育。使用增湿培养箱,7%CO2和37℃环境在摇瓶中进行种子系列培养。每3天至4天将细胞分瓶以继代培养和扩充培养物。对于全部实验,使用直至实验开始时培养物中年龄相同(大约21代)的细胞。For all cell culture experiments, a recombinant CHO-K1 cell line expressing a humanized monoclonal antibody was used, referred to as clone 1. Recombinant CHO-K1 cell line was generated using a CHO-K1 host cell line (Lonza, Cologne, Germany) sensitive to L-methionine sulfoximine. During seed series cultivation, cells were cultivated in a protein-free, chemically defined CD-CHO culture medium (Life Technologies, Darmstadt, Germany) supplemented with 50 μM L-methionine sulfoximine (Sigma Aldrich, Munich, Germany). Seed series cultivation was performed in a humidified incubator, 7% CO 2 , and 37°C environment in a shake flask. Every 3 to 4 days, cells were sub-bottled to culture and expand the culture. For all experiments, cells of the same age (approximately 21 generations) were used until the start of the experiment.
间-Tyr和邻-Tyr补充实验m-Tyr and o-Tyr supplementation experiments
全部补充实验均使用摇瓶培养系统、无选择压力L-蛋氨酸亚砜亚胺的化学成分确知CD-CHO培养基和两个适宜的系列连续施加的进料(进料1和进料2)进行。将产生人源化单克隆抗体的重组CHO-K1细胞用3×105个活细胞/mL接种并且培养14天。接种前,用0.1mM、0.3mM或0.4mM邻-Tyr、间-Tyr或对-Tyr无菌补充CD-CHO基础培养基。使用未补充邻-Tyr、间-Tyr或对-Tyr的对照培养作为参照。通过增加进料2中的Phe浓度,实现苯丙氨酸(Phe)非限制条件。All supplementation experiments were performed using a shake flask culture system, a chemically defined CD-CHO medium containing no selective pressure L-methionine sulfoximine, and two suitable series of continuously applied feeds (feed 1 and feed 2). Recombinant CHO-K1 cells producing humanized monoclonal antibodies were inoculated with 3×10 5 viable cells/mL and cultured for 14 days. Prior to inoculation, CD-CHO basal medium was aseptically supplemented with 0.1 mM, 0.3 mM, or 0.4 mM o-Tyr, m-Tyr, or p-Tyr. A control culture not supplemented with o-Tyr, m-Tyr, or p-Tyr was used as a reference. Phenylalanine (Phe) non-limiting conditions were achieved by increasing the Phe concentration in feed 2.
活细胞密度、成活力和细胞时间积分(Cell Time Integral)Live cell density, viability and cell time integral
为了分析活细胞密度和总细胞密度,使用自动化Cedex HiRes系统(RocheDiagnostics,曼海姆,德国)。使用台盼蓝拒染法并且根据制造商的说明书分析每份样品和每天超过10张照片,评价活细胞密度和总细胞密度的区别。活细胞密度(VCD)和细胞成活力分别如等式1(Equ1)和等式2(Equ2)中所述那样计算。To analyze viable cell density and total cell density, an automated Cedex HiRes system (Roche Diagnostics, Mannheim, Germany) was used. Each sample and more than 10 images per day were analyzed using trypan blue exclusion according to the manufacturer's instructions to evaluate the difference between viable cell density and total cell density. Viable cell density (VCD) and cell viability were calculated as described in Equation 1 (Equ1) and Equation 2 (Equ2), respectively.
(Equ1) 活细胞密度=N台盼蓝阴性×(105个活细胞/ml)(Equ1) Viable cell density = N trypan blue negative × (10 5 viable cells/ml)
(Equ2) 细胞成活力=N台盼蓝阴性/(N台盼蓝阴性+N台盼蓝阳性细胞)×100%(Equ2) Cell viability = N trypan blue negative / (N trypan blue negative + N trypan blue positive cells) × 100%
作为过程中生成的总生物量的指标,如下计算累积性细胞时间积分(CTI)(Equ3)。As an indicator of the total biomass produced during the process, the cumulative cell time integral (CTI) was calculated as follows (Equ 3).
(Equ3) 细胞时间积分=Σ(0.5×(VCDn-1+VCDn)×(tn–tn-1))×(105个活细胞×d/ml)(Equ3) Cellular time integral = Σ(0.5 × (VCD n-1 + VCD n ) × (t n – t n-1 )) × (10 5 viable cells × d/ml)
使用Cobas Integra 400plus系统(Roche Diagnostics,曼海姆,德国),分析无细胞上清液中的乳酸脱氢酶(LDH)活性。The cell-free supernatant was analyzed for lactate dehydrogenase (LDH) activity using the Cobas Integra 400plus system (Roche Diagnostics, Mannheim, Germany).
IgG滴度定量和qP的计算IgG titer quantification and qP calculation
通过Cobas Integra 400plus系统(Roche,曼海姆,德国)根据制造商的方案或通过如先前所描述的PorosA HPLC法(Zeck等人,2012),定量产物滴度。根据等式4计算总比生产率qP以分析细胞生产能力。Product titer was quantified by Cobas Integra 400plus system (Roche, Mannheim, Germany) according to the manufacturer's protocol or by PorosA HPLC method as described previously (Zeck et al., 2012). The overall specific productivity qP was calculated according to Equation 4 to analyze cell production capacity.
(Equ 4)qP=(滴度n-滴度n-1)/(CTIn–CTIn-1)×(pg/(活细胞×d))(Equ 4) qP = (titer n - titer n-1 )/( CTIn - CTIn-1 ) × (pg/(viable cells × d))
确定肽序列变体和用合成肽鉴定间-Tyr和邻-Tyr序列变体Determination of peptide sequence variants and identification of m-Tyr and o-Tyr sequence variants using synthetic peptides
如先前所述那样进行肽序列变体的定量(Zeck等人,2012)。简而言之,通过添加变性缓冲液(0.4M Tris,8M盐酸胍,pH 8)至终体积240μL,使抗体样品(250μg)变性。通过添加在变性缓冲液中新制备的20μL 0.24M DTT并在37℃温育60分钟,实现还原。随后,通过添加水中的20μL 0.6M碘乙酸在室温在暗处,使样品烷基化15分钟。通过添加30μL DTT溶液,失活过量的烷基化试剂。随后使用NAP 5 Sephadex G-25 DNA级柱(GE Healthcare,慕尼黑,德国),将样品的缓冲液交换成大约480μL 50mM Tris/HCl,pH 7.5。用胰蛋白酶在37℃进行5小时(比率1:37)消化。将获得的肽混合物进样和在不预处理的情况下使用反相HPLC分离(Agilent 1100 Cap LC,Agilent Technologies,德国)。来自Varian(达姆施塔特,德国)的Polaris 3 C18-醚柱(1x 250mm;3μm粒径,孔径)用于分离。溶剂是水中(A)和乙腈中(B)的0.1%甲酸(SigmaAldrich,慕尼黑,德国)。在37℃在80分钟期间运行2%B至38%B的线性梯度。将HPLC洗脱物使用Triversa NanoMate(Advion,Ithaca,NY)和380nL/分钟分割,输入以正离子模式运行的LTQ Orbitrap经典串联质谱仪(ThermoFisherScientific,Dreieich,德国)。为了确认提取的离子层析图中的邻-Tyr峰和间-Tyr峰,我们使用以下合成肽:mAb HC66-72DQFTISR(未修饰的)、DQpYTISR、DQmYTISR和DQoYTISR。合成肽购自Biosyntan GmbH(柏林,德国)。Quantification of peptide sequence variants was performed as previously described (Zeck et al., 2012). In short, antibody samples (250 μg) were denatured by adding denaturing buffer (0.4M Tris, 8M guanidine hydrochloride, pH 8) to a final volume of 240 μL. Reduction was achieved by adding 20 μL 0.24M DTT freshly prepared in denaturing buffer and incubating at 37°C for 60 minutes. Subsequently, the sample was alkylated for 15 minutes at room temperature in the dark by adding 20 μL 0.6M iodoacetic acid in water. Excess alkylating agent was inactivated by adding 30 μL DTT solution. Subsequently, NAP 5 Sephadex G-25 DNA grade columns (GE Healthcare, Munich, Germany) were used to exchange the sample's buffer into approximately 480 μL 50mM Tris/HCl, pH 7.5. Digestion was performed with trypsin at 37°C for 5 hours (ratio 1:37). The peptide mixture obtained was injected and separated using reverse phase HPLC (Agilent 1100 Cap LC, Agilent Technologies, Germany) without pretreatment. A Polaris 3 C18-ether column (1x 250mm; 3 μm particle size, pore size) from Varian (Darmstadt, Germany) was used for separation. The solvent was 0.1% formic acid (SigmaAldrich, Munich, Germany) in water (A) and acetonitrile (B). A linear gradient of 2% B to 38% B was run at 37°C over 80 minutes. The HPLC eluate was split using a Triversa NanoMate (Advion, Ithaca, NY) and 380 nL/min and input into a LTQ Orbitrap classic tandem mass spectrometer (ThermoFisherScientific, Dreieich, Germany) running in positive ion mode. To confirm the o-Tyr and m-Tyr peaks in the extracted ion chromatograms, we used the following synthetic peptides: mAb HC66-72DQFTISR (unmodified), DQpYTISR, DQmYTISR, and DQoYTISR. The synthetic peptides were purchased from Biosyntan GmbH (Berlin, Germany).
计算罚分系数和代用标记(Surrogate Makers)用于Phe→邻-Tyr和Phe→间-Tyr 序列变体预测 Calculate Penalty Factors and Surrogate Makers for Phe→o-Tyr and Phe→meta-Tyr Sequence Variant Prediction
我们假设,并入间-Tyr和/或邻-Tyr而非Phe可以由这样的简化模型描述,所述简化模型假设惩罚使用间-Tyr和/或邻-Tyr而不惩罚使用Phe。这个罚分系数可以因不同来源如L-Phe更好转运入细胞和/或蛋白质合成期间尽力防止使用间-Tyr和/或邻-Tyr的编辑机制而产生。这种假设导致等式We hypothesized that the incorporation of m-Tyr and/or o-Tyr instead of Phe can be described by a simplified model that assumes a penalty for the use of m-Tyr and/or o-Tyr but not for the use of Phe. This penalty coefficient may arise from better transport of different sources such as L-Phe into the cell and/or from editing mechanisms that try to prevent the use of m-Tyr and/or o-Tyr during protein synthesis. This assumption leads to the equation
(Equ 5)p×r×[x]=[y],(Equ 5)p×r×[x]=[y],
其中p是罚分系数,r是平均间-Tyr浓度或邻-Tyr浓度对Phe浓度的比率(在给定时间间隔期间),[x]是(在时间区间中)产生的蛋白质的浓度)和[y]是具有序列变体的产生的蛋白质的浓度。注意这个模型不包括任何对导致例如相移的时间、过程阶段、Phe和间-Tyr浓度或邻-Tyr浓度比率的依赖性。罚分系数的计算简单明了(Equ7)。Where p is the penalty coefficient, r is the ratio of the average meta-Tyr concentration or o-Tyr concentration to the Phe concentration (during a given time interval), [x] is the concentration of the produced protein (in the time interval), and [y] is the concentration of the produced protein with the sequence variant. Note that this model does not include any dependence on time, process stage, Phe and meta-Tyr concentration or o-Tyr concentration ratio that could lead to, for example, phase shifts. The calculation of the penalty coefficient is straightforward (Equation 7).
(Equ 6)p=[y]/(r×[x])(Equ 6) p = [y] / (r × [x])
类似地,已知罚分系数,还可能就无序列变体的产物的目的百分数而言计算间-Tyr浓度或邻-Tyr浓度对Phe浓度的比率。Similarly, knowing the penalty coefficient, it is also possible to calculate the ratio of the concentration of meta-Tyr or ortho-Tyr to the concentration of Phe for the desired percentage of product without sequence variants.
实施例1Example 1
间-酪氨酸补充对苯丙氨酸限制条件下比生产率(qP)调节的影响Effect of m-tyrosine supplementation on the regulation of specific productivity (qP) under phenylalanine-limited conditions
Gurer-Orhan等人之前已报道了,向CHO细胞补充间-Tyr显示剂量依赖性细胞毒性。在浓度筛选中,当补充0.5mM间-Tyr时观察到MTX减少CHO细胞的能力为50%减少(Gurer-Orhan等人,(2006))。迄今尚未报告用于细胞培养物中邻-Tyr补充的数据或浓度。使用剂量依赖性培养方案,目的在于确定间-Tyr和邻-Tyr对CHO细胞生长性能的关联性和可耐受浓度。为此,对材料和方法中描述的CHO培养模型补充0.1mM、0.3mM或0.4mM对-Tyr、邻-Tyr或间-Tyr。遵循所谓“对照”或“阳性对照”,我们使用未补充的标准培养方法作为参比。这里,截至第10/11日将Phe进入限制。Gurer-Orhan et al. have previously reported that supplementation of CHO cells with inter-Tyr exhibits dose-dependent cytotoxicity. In a concentration screen, a 50% reduction in the ability of MTX to reduce CHO cells was observed when 0.5 mM inter-Tyr was supplemented (Gurer-Orhan et al., (2006)). To date, no data or concentrations for o-Tyr supplementation in cell culture have been reported. A dose-dependent culture protocol was used to determine the relevance and tolerable concentrations of inter-Tyr and o-Tyr for CHO cell growth performance. To this end, the CHO culture model described in the materials and methods was supplemented with 0.1 mM, 0.3 mM or 0.4 mM p-Tyr, o-Tyr or inter-Tyr. Following the so-called "control" or "positive control", we used an unsupplemented standard culture method as a reference. Here, Phe was brought into restriction as of day 10/11.
在第一方案中,分析间-Tyr和邻-Tyr对宏观细胞生长标志物、活细胞密度(VCD)、细胞成活力和作为总生物量产生的细胞时间积分(CTI)的作用。在第9/10日,测试全部培养物,例外是补充间-Tyr的一个培养物,达到大约180x 105个细胞/ml的最大VCD,而间-Tyr处理的CHO克隆1显示剂量依赖性减少的最大VCD(图2)。观察到间-Tyr补充的CHO培养物的累积性CTI减少(图1)。In the first approach, the effects of inter-Tyr and o-Tyr on macroscopic cell growth markers, viable cell density (VCD), cell viability, and cell time integral (CTI) as total biomass production were analyzed. On day 9/10, all cultures were tested except one culture supplemented with inter-Tyr, which reached a maximum VCD of approximately 180 x 10 5 cells/ml, while inter-Tyr treated CHO clone 1 showed a dose-dependent decrease in maximum VCD ( FIG2 ). A cumulative decrease in CTI was observed for inter-Tyr supplemented CHO cultures ( FIG1 ).
与Gurer-Orhan等人先前发表的数据相反,在我们的补料分批CHO培养模型中未观察到间-Tyr补充对细胞成活力的明显影响。然而,补充邻-Tyr显示细胞成活力较低,在第14日小于60%,并且与对照和间-Tyr补充以及对-Tyr补充相比,上清液中最终乳酸脱氢酶活性较高(图5)。In contrast to data previously published by Gurer-Orhan et al., no significant effect of m-Tyr supplementation on cell viability was observed in our fed-batch CHO culture model. However, o-Tyr supplementation showed lower cell viability, less than 60% on day 14, and higher final lactate dehydrogenase activity in the supernatant compared to the control and m-Tyr and p-Tyr supplementation (Figure 5).
通过产物浓度分析确定的培养物总生产率揭示了各试验情形之间没有差异(图3)。全部培养物均显示滴度从第11/12日起停滞不升。另外,单一的间-Tyr显示总体较高的比生产率qP(图4)。与对照相比,Phe限制条件下补充0.1mM、0.3mM和0.4mM间-Tyr将qP分别增加+5%、+26%和+36%。Total culture productivity, determined by product concentration analysis, revealed no differences between experimental conditions ( FIG3 ). All cultures showed plateauing titers from day 11/12 onward. Furthermore, single meta-Tyr exhibited an overall higher specific productivity, qP ( FIG4 ). Under Phe-limited conditions, supplementation with 0.1 mM, 0.3 mM, and 0.4 mM meta-Tyr increased qP by +5%, +26%, and +36%, respectively, compared to the control.
实施例2Example 2
间-酪氨酸补充对苯丙氨酸非限制条件下比生产率(qP)调节的影响Effect of m-tyrosine supplementation on the regulation of specific productivity (qP) under non-phenylalanine-limiting conditions
在第二方案中,分析了Phe非限制条件下间-Tyr和邻-Tyr补充在CHO补料分批培养中的作用。为此,增加进料2中Phe的量以防止Phe限制(图6)。In the second approach, the effect of meta-Tyr and o-Tyr supplementation in CHO fed-batch cultures under Phe non-limiting conditions was analyzed. To this end, the amount of Phe in feed 2 was increased to prevent Phe limitation (Figure 6).
再次,测试全部培养物,例外是补充间-Tyr的一个培养物,达到大约35,000至40,000x 105个细胞*h/ml的相似CTI,而间-Tyr处理的CHO克隆1显示CTI的剂量依赖性减少(图6)。对全部试验的条件未观察到产物滴度差异(图7)。但是,与前文描述的Phe限制条件相比,向CHO培养物提供足够的Phe阻止了产物滴度的停滞不升。间-Tyr补充显示总体较高的比生产率qP(图4),甚至在Phe非限制条件下也是如此(图8)。与对照相比,Phe非限制条件下补充0.1mM、0.3mM和0.4mM间-Tyr将qP分别增加+3%、+26%和+28%。Again, all cultures were tested, with the exception of one culture supplemented with meta-Tyr, which achieved similar CTIs of approximately 35,000 to 40,000 x 10 5 cells * h / ml, while meta-Tyr treated CHO clone 1 showed a dose-dependent reduction in CTI ( FIG. 6 ). No differences in product titer were observed for all conditions tested ( FIG. 7 ). However, providing sufficient Phe to the CHO cultures prevented stagnation in product titer compared to the Phe-limited conditions described above. Meta-Tyr supplementation showed an overall higher specific productivity qP ( FIG. 4 ), even under Phe-unlimited conditions ( FIG. 8 ). Supplementation with 0.1 mM, 0.3 mM, and 0.4 mM meta-Tyr under Phe-unlimited conditions increased qP by +3%, +26%, and +28%, respectively, compared to the control.
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