GB2350187A

GB2350187A - Hybrid photon counting : integrating light detection system

Info

Publication number: GB2350187A
Application number: GB0011109A
Authority: GB
Inventors: Kenneth L Staton; Andreas Dorsel; Arthur Schleifer
Original assignee: Agilent Technologies Inc
Current assignee: Agilent Technologies Inc
Priority date: 1999-05-17
Filing date: 2000-05-08
Publication date: 2000-11-22
Anticipated expiration: 2020-05-08
Also published as: US6518556B2; US6355921B1; GB0011109D0; GB2350187B; US20020070330A1; JP2000356594A

Abstract

A system for large dynamic range light detection includes a hybrid counting/integrating system for processing a signal from a photomultiplier tube (PMT) 12 in response to an incident light beam 10. The system may comprise a photon counting photon discriminator counter 14 and a charge integrator 16 processing the signal from the PMT such that signals below a first level are counted and signals above a second level are integrated. The counter 14 and integrator 16 may be realised in a DSP system 22, 24. The large dynamic range may also be achieved in a cascaded detector system (figures 3 and 4) utilising at least one asymmetric beam splitter for delivering a larger fraction of incident light to a PMT, possibly for photon counting processing and a smaller fraction of incident light to another PMT possibly for charge integration processing.

Description

2350187 LIGHT DETECTION SYSTEM This invention relates to large dynamic

range light detection, for example for use in fluorescence readers to accbminodate large dynamic ranges while maintaining optimal signalto-noise performance.

Fluorescence readers are often used for re-sequencing or gene expression studies. In these systems, light such as that from a laser is directed onto a target which may include molecules capable of fluorescing. The emitted fluorescent light is then detected and analyzed. Detection is often accomplished using a photomultiplier tube in which incident light falls upon a photocathode thereby liberating primary electrons via the photoelectric effect. These primary electrons encounter structures known as dynodes to release secondary electrons. The electrons migrate to an anode and produce a current pulse. The dynamic range of the photomultiplier tube (PMT) is the ratio of the strongest expected signal to the weakest expected signal. At the low end of the signal range it is advantageous to count photons while at the high end such counting may no longer be possible due to pulse overlap and for other reasons.

A brute-force approach to the large dynamic range problem is to increase measurement (averaging) time to extend the detection range toward lower signal levels. While other solutions are available (compare, for example, a quantum photometer in "The Art of Electronics" by Horowitz and Hill, P. 998, ISBN 0-521-37095-7, Second Edition 1989), they do not permit the fast (pixel times on the order of microseconds) simultaneous measurement of current and fast photon counting. The present invention will increase dynamic range without increasing.measurement or averaging time.

The present invention seeks to provide improved light detection.

In one aspect, the system according to the invention for large dynamic range light detection includes a photornultiplier tube for receiving incident light photons and for generating an output electrical signal in response to the incident light. A discriminator/counter responds to the output signal from the photomultiplier tube to count photons for output signals below a first selected level. A charge integrator responds to the output signal from the photomultiplier tube to integrate the output signal for output signals above a second selected level. Control circuitry is provided responsive to the discriminator/counter and to the charge integrator so that dynamic range is increased. In one embodiment, control circuitry is provided to record outputs from the discriminator/counter and from the charge integrator. In another embodiment, the control circuitry selects an output either from the discriminator/counter or from the charge integrator or a linear combination of the two based on strength of the output signal and stores the selected output. The control circuitry may be a digital signal processor.

In another aspect, the system of the invention for increasing dynamic range includes a photomultiplier tube for receiving incident light photons and generating output electrical signal in response to the incident light. An analog-to-digital converter responds to the output signal to generate a digital signal, and a digital signal processor operates on the digital signal. The digital signal processor is programmed to analyze the signal to determine whether the signal is within a photon counting range or within an integrating range. The digital signal processor is further programmed to mimic photon counting when the signal is in the photon counting range or to integrate the signal when the signal is in.the integrating range and to generate an output. A photomultiplier tube preamplifier circuit may be provided to broaden pulses from the photomultiplier tube to cover several sampling intervals.

In yet another aspect, the system according to the invention for large dynamic range light detection includes at least one asymmetric beam splitter for receiving incident light and to direct a larger fraction of the incident light to one photomultiplier tube and to direct a smaller fraction of the incident light to at least one other photomultiplier tube. In 3 a preferred embodiment, the photomultiplier tube receiving the larger fraction of incident light is operated in a photon counting mode and the photomultiplier tube receiving the smaller fraction of the incident light is operated in an integrating mode. A suitable larger fraction is 90% of the incident light and a suitable smaller fraction is 10% of the incident light. A suitable beam splitter is uncoated glass. A digital signal processor may be provided for operating on the signals from the photomultiplier tubes. It is also preferred that a fast modulator be provided to attenuate the incident light based on an actual signal thus resulting in dynamic compression.

The preferred embodiment can extend signal dynamic range to allow photon counting at the low end of the dynamic range and extend the range up to a maximum light load that the light detector can accommodate. The systems can allow covering dynamic ranges that are limited by the photon counting detection limit at the lower end and by the destruction threshold of the PMT at the high end. They also make it possible to achieve dynamic ranges of 10' and more.

An embodiment of the present invention is described below, by way of example only, with reference to the accompanying drawings, in which:

Fig. I is a block diagram illustrating one embodiment of the invention.

Fig. 2 is a block diagram illustrating an embodiment of the invention utilizing a digital signal processor.

Figure 3 is a schematic d. iagram illustrating yet another embodiment of the present invention.

Fig. 4 is a schematic diagram illustrating an embodiment of the invention using uncoated beam splitters.

With reference first to Fig. 1, a hybrid approach to increasing dynamic range will be described. Incident light illustrated by an arrow 10 such as light from fluorescing molecules is detected by a photomultiplier tube (PMT) 12. An output of the PMT 12 4 forms an input both to a discriminator/counter 14 and a charge integrator 16. The discriminator/counter 14 covers a range of low signals and eliminates most of the excess noise of the PMT 12. In a preferred embodiment, the output current of the PMT 12 is first converted into a voltage using an electrometer which may be considered part of the PMT 12 block in Fig. 1. The integrator 16 covers stronger signal ranges where excess noise is no longer a problem, up to the PMT's saturation/destruction limit. For a typical system, the low and high signal regimes will overlap by a factor of two or more and thus can be gauged to give a continuous transition from counting to integration. The outputs of the discriminator/counter 14 and integrator 16 are read out and reset by a control circuit 18. The control circuit 18 either records both results in storage 20 or chooses one of them based on signal strength and stores only that one in the storage 20. The control circuit 18 may be a digital signal processor (DSP).

Fig. 2 is an embodiment of the invention utilizing fast digital signal processors which can perform both the counting and integrating functions. In this embodiment, the output from the PMT 12 is digitized in an analogto-digital converter 22 and is Processed by a digital signal processor 24. The fast DSP 24 analyzes the output of the analog to digital converter 22 in a manner such that not a single photon event is missed if possible. This functionality can be achieved by having a PMT preamplifier circuit (not shown) that broadens the PMT pulses just enough to cover a few sampling intervals while not yet reducing pulse height excessively. The DSP 24 analyzes the signal (e.g., by looking at its integrated value first) to find out whether it is in the counting range or the integrating range and then either applies an algorithm that mimics photon counting (i. e., a pulse height discrimination and counting) or integrates the signal if not previously performed. In a crossover region between the high and low signal regimes either a transition point or a gradual transition using the two signals is possible. The DSP 24 can also compensate non-linearities of the signal-versus-light level response. This approach, too, gets rid of the PMT excess noise at the low end of the signal range.

A second cascaded approach to increasing dynamic range is shown in Fig. 3. Incident light 10 encounters an asymmetric beam splitter 30 which directs most (e.g. 90%) of the incident light to a photomultiplier tube 32 (PMT). The remaining light (e.g. I 09/o) passes through the bearnsplitter and may be directed to a last PMT 34 or be split up further by additional bearnsplitters that direct the larger fraction of the light passed on by the previous beam splitter to intermediate PMTs 38. The PMT 32 which receives the largest fraction of the signal is preferably run in photon counting mode while the PMTs 34 and 38 are operated in charge integration mode. As in the embodiment of Figs. I and 2, additional circuitry (e.g. a DSP) can be provided in the embodiment of Fig. 3 to choose the appropriate combination of output signals to be either combined into one output signal or to be recorded/stored in parallel.

The asymmetric beam splitters 30 would in this case normally have to be coated plates. Also, their reflectivities may be different from one another for some designs. The angle of incidence shown serves for illustration purposes only. In the case shown, typical transmissions might be 10% and typical reflectivities might be 90%. If each of the PMTs has a dynamic range of 10, then the total dynamic range would be 10' for two PMTs and even more for additional PMTs.

Another embodiment is shown in Fig. 4. In this arrangement, the beam splitters 40 can be uncoated substrates which are less expensive than coated substrates. The uncoated substrate will reflect about 10% and transmit about 90% of the incident light. Again, the PMT 32 gets the strongest signal and the PMT 34 gets the weakest signal with the PMTs 38 getting increasingly weaker signals as one moves from the PMT 32 to the PMT 34.

The designs illustrated in Figs. 3 and 4 may be limited by the damage threshold of the PMT 32 which sees the larger share of the signal. There are several ways to deal with 6 the potential damage problem. First of all, one could modulate the illumination power by modulating the source of light directly or using an external modulator (e.g. for diode laser or LED source). Alternatively, the emitted fluorescent light can be modulated to reduce the amount of light going to PMT 32 while leaving the full signal on the PMT 34. This approach would protect both the cathode and dynodes of the PMT 32. Alternatively, the PMT bias voltage can be modulated for one or more electrodes, which will protect dynodes but not the photocathode.

Both the hybrid counting/integrating system and the cascaded detector system described above extend signal dynamic range by allowing photon counting at the low end of the dynamic range and extended up to the maximum light load the detector can handle. Both approaches allow covering dynamic ranges that are limited by the photon counting detection limit at the lower end and by the destruction threshold of the PMT at the high end. Dynamic ranges well in excess of 10' and more are achievable with the designs of this invention.

The disclosures in United States patent application No. 09/313,102, from which this application claims priority, and in the abstract accompa. nying this application are incorporated herein by reference.

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Claims

1. A system for large dynamic range light detection including: a photomultiplier tube for receiving incident light photons and for generating an output electrical signal in response to the incident light; a discriminator/counter responsive to the output signal from the photomultiplier tube to count photons for output signals below a first selected level; a charge integrator responsive to the output signal from the photomultiplier tube to integrate the output signal for output signals above a second selected level; and control circuitry responsive to the discriminator/counter and to the charge integrator whereby dynamic range is increased.

2. A system as in claim 1, wherein the control circuit is operable to record outputs from the discriminator/counter and the charge integrator.

3. A system as in claim 1, wherein the control circuitry is operable to select output either from the discriminator/counter or the charge integrator or a linear combination of the two based on strength of the output signals and stores the selected output.

4. A system as in any preceding claim, wherein the control circuitry is a digital signal processor.

5. A system for large dynamic range light detection including: a photomultiplier tube for receiving incident light photons and for generating an output electrical signal in response to the incident light; an analog-to-digital convertor responsive to the output signals to generate a digital signal; and a digital processor for operating the digital signal, the digital signal processor being operable to analyze the signal to determine whether the signal is in a photon counting range or in an integrating range, the digital processor being operable to mimic photon counting when 8 the signal is in the photon counting range or to integrate the signal when the signal is in the integrating range and to generate an output.

6. A system as in claim 5, including a photomultiplier tube preamplifier circuit operable to broaden pulses from the photomultiplier tube to cover a few sampling intervals.

7. A system for large dynamic range light detection including: at least one asymmetric beam splitter for receiving incident light and operable to direct a larger fraction of the incident light to one photomultiplier tube and to direct a smaller fraction of the incident light to at least one other photomultiplier tube.

8. A system as in claim 7, wherein the photomultiplier tube receiving the larger fraction of incident light is operated in a photon counting mode and wherein the photomultiplier tube receiving the smaller fraction of the incident light is operated in an integrating mode.

9. A system as in claim 7 or 8, wherein the larger fraction is approximately 90% and the smaller fraction is approximately 10%.

10. A system as in claim 7, 8 or 9, wherein the beam splitter is uncoated glass.

11. A system as in any one of claims 7 to 10, including a digital signal processor operable to choose an appropriate combination of output signals to be combined either into one output signal or to be recorded/stored in parallel.

12. A system as in any one of claims 7 to 11, including a fast modulator operable to attenuate light incident on the sample.

13. The system as in any one of claims 7 to 11, including a fast modulator operable to attenuate incident light on at least one of the PMT's.

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14. A system for large dynamic range light detection substantially as hereinbefore described with reference to an as illustrated in the accompanying drawings.