EP3762508A4 - MICROARRAY BASED MULTIPLEX PATHOGEN ANALYSIS AND THEIR USE - Google Patents

MICROARRAY BASED MULTIPLEX PATHOGEN ANALYSIS AND THEIR USE Download PDF

Info

Publication number: EP3762508A4
Authority: EP; European Patent Office
Prior art keywords: microarray based; based multiplex; pathogen analysis; multiplex pathogen; analysis
Prior art date: 2018-03-08
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.): Pending

Application number

EP19764885.0A

Other languages

German (de)

French (fr)

Other versions

EP3762508A2 (en

Inventor

Michael Edward Hogan

Melissa Rose MAY

Frederick Henry EGGERS

Current Assignee (The listed assignees may be inaccurate. Google has not performed a legal analysis and makes no representation or warranty as to the accuracy of the list.)

PathogenDx Inc

Original Assignee

PathogenDx Inc

Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)

2018-03-08

Filing date

2019-03-08

Publication date

2021-12-15

2018-03-08 Priority claimed from US15/916,062 external-priority patent/US11542498B2/en

2018-03-08 Priority claimed from US15/916,036 external-priority patent/US10612075B2/en

2018-10-11 Priority claimed from US16/158,276 external-priority patent/US10513745B2/en

2019-03-08 Application filed by PathogenDx Inc filed Critical PathogenDx Inc

2021-01-13 Publication of EP3762508A2 publication Critical patent/EP3762508A2/en

2021-12-15 Publication of EP3762508A4 publication Critical patent/EP3762508A4/en

Status Pending legal-status Critical Current

Classifications

- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6813—Hybridisation assays
- C12Q1/6834—Enzymatic or biochemical coupling of nucleic acids to a solid phase
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6813—Hybridisation assays
- C12Q1/6834—Enzymatic or biochemical coupling of nucleic acids to a solid phase
- C12Q1/6837—Enzymatic or biochemical coupling of nucleic acids to a solid phase using probe arrays or probe chips
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6876—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
- C12Q1/6888—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms
- C12Q1/6895—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms for plants, fungi or algae
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q2563/00—Nucleic acid detection characterized by the use of physical, structural and functional properties
- C12Q2563/107—Nucleic acid detection characterized by the use of physical, structural and functional properties fluorescence
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q2600/00—Oligonucleotides characterized by their use
- C12Q2600/13—Plant traits
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q2600/00—Oligonucleotides characterized by their use
- C12Q2600/16—Primer sets for multiplex assays

Landscapes

Chemical & Material Sciences (AREA)
Life Sciences & Earth Sciences (AREA)
Organic Chemistry (AREA)
Proteomics, Peptides & Aminoacids (AREA)
Engineering & Computer Science (AREA)
Health & Medical Sciences (AREA)
Zoology (AREA)
Wood Science & Technology (AREA)
Analytical Chemistry (AREA)
Biotechnology (AREA)
Microbiology (AREA)
General Engineering & Computer Science (AREA)
Physics & Mathematics (AREA)
Immunology (AREA)
Biophysics (AREA)
Biochemistry (AREA)
Bioinformatics & Cheminformatics (AREA)
Molecular Biology (AREA)
General Health & Medical Sciences (AREA)
Genetics & Genomics (AREA)
Botany (AREA)
Mycology (AREA)
Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
Apparatus Associated With Microorganisms And Enzymes (AREA)

EP19764885.0A 2018-03-08 2019-03-08 MICROARRAY BASED MULTIPLEX PATHOGEN ANALYSIS AND THEIR USE Pending EP3762508A4 (en)

Applications Claiming Priority (4)

Application Number	Priority Date	Filing Date	Title
US15/916,062 US11542498B2 (en)	2015-12-28	2018-03-08	Microarray based multiplex pathogen analysis and uses thereof
US15/916,036 US10612075B2 (en)	2015-12-28	2018-03-08	Microarray based multiplex pathogen analysis and uses thereof
US16/158,276 US10513745B2 (en)	2015-12-28	2018-10-11	Microarray based multiplex pathogen analysis and uses thereof
PCT/US2019/021317 WO2019173695A2 (en)	2018-03-08	2019-03-08	Microarray based multiplex pathogen analysis and uses thereof

Publications (2)

Publication Number	Publication Date
EP3762508A2 EP3762508A2 (en)	2021-01-13
EP3762508A4 true EP3762508A4 (en)	2021-12-15

Family

ID=67847534

Family Applications (1)

Application Number	Title	Priority Date	Filing Date
EP19764885.0A Pending EP3762508A4 (en)	2018-03-08	2019-03-08	MICROARRAY BASED MULTIPLEX PATHOGEN ANALYSIS AND THEIR USE

Country Status (9)

Country	Link
EP (1)	EP3762508A4 (en)
JP (1)	JP2021516995A (en)
KR (1)	KR20210028142A (en)
CN (1)	CN112154215A (en)
AU (1)	AU2019231794A1 (en)
CA (1)	CA3093451A1 (en)
MX (1)	MX2020009282A (en)
WO (1)	WO2019173695A2 (en)
ZA (1)	ZA202006213B (en)

Families Citing this family (3)

* Cited by examiner, † Cited by third party
Publication number	Priority date	Publication date	Assignee	Title
US20210317540A1 (en) *	2015-12-28	2021-10-14	Pathogendx, Inc.	Microarray-Based Multiplex Fungal Pathogen Analysis
WO2022033453A1 (en) *	2020-08-12	2022-02-17	深圳市真迈生物科技有限公司	Amino-modified chip, preparation method therefor and use thereof
WO2023027073A1 (en) *	2021-08-27	2023-03-02	株式会社島津製作所	Quantitative pcr method using internal control

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WO1999005321A1 (en) *	1997-07-22	1999-02-04	Rapigene, Inc.	Amplification and other enzymatic reactions performed on nucleic acid arrays
US20170327599A1 (en) *	2013-05-14	2017-11-16	Genomics Usa, Inc.	Compositions and methods for entrapping protein on a surface

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ATE204290T1 (en) *	1996-11-06	2001-09-15	Sequenom Inc	COMPOSITIONS AND METHODS FOR IMMOBILIZING NUCLEIC ACID ON SOLID SUPPORTS
US6238869B1 (en) *	1997-12-19	2001-05-29	High Throughput Genomics, Inc.	High throughput assay system
WO2000009758A1 (en) *	1998-08-14	2000-02-24	The Regents Of The University Of California	NOVEL AMPLICON IN THE 20q13 REGION OF HUMAN CHROMOSOME 20 AND USES THEREOF
JP4312595B2 (en) *	2001-07-11	2009-08-12	ベイラーカレッジオブメディシン	Method and apparatus based on a novel form of nucleic acid duplex on a surface
US6902900B2 (en) *	2001-10-19	2005-06-07	Prolico, Llc	Nucleic acid probes and methods to detect and/or quantify nucleic acid analytes
CA2604095A1 (en) *	2005-04-12	2006-10-19	454 Life Sciences Corporation	Methods for determining sequence variants using ultra-deep sequencing
JP5196846B2 (en) *	2007-05-14	2013-05-15	キヤノン株式会社	Probe set, probe carrier, test method and DNA detection kit
KR101829182B1 (en) *	2009-04-02	2018-03-29	플루이다임 코포레이션	Multi-primer amplification method for barcoding of target nucleic acids
EP2532754A1 (en) *	2011-06-07	2012-12-12	Koninklijke Philips Electronics N.V.	Devices and methods for efficient capture of nucleic acids
KR20180008785A (en) *	2015-06-17	2018-01-24	도요세이칸 그룹 홀딩스 가부시키가이샤	Microorganism inspection method, microorganism inspection kit, microarray for microorganism inspection, carrier for detecting mold, kit for detecting mold and kit for detecting mold

2019
- 2019-03-08 EP EP19764885.0A patent/EP3762508A4/en active Pending
- 2019-03-08 WO PCT/US2019/021317 patent/WO2019173695A2/en not_active Ceased
- 2019-03-08 CA CA3093451A patent/CA3093451A1/en active Pending
- 2019-03-08 MX MX2020009282A patent/MX2020009282A/en unknown
- 2019-03-08 CN CN201980030521.2A patent/CN112154215A/en active Pending
- 2019-03-08 JP JP2020571331A patent/JP2021516995A/en active Pending
- 2019-03-08 AU AU2019231794A patent/AU2019231794A1/en not_active Abandoned
- 2019-03-08 KR KR1020207029030A patent/KR20210028142A/en not_active Ceased
2020
- 2020-10-07 ZA ZA2020/06213A patent/ZA202006213B/en unknown

Patent Citations (2)

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Publication number	Priority date	Publication date	Assignee	Title
WO1999005321A1 (en) *	1997-07-22	1999-02-04	Rapigene, Inc.	Amplification and other enzymatic reactions performed on nucleic acid arrays
US20170327599A1 (en) *	2013-05-14	2017-11-16	Genomics Usa, Inc.	Compositions and methods for entrapping protein on a surface

Non-Patent Citations (7)

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Title
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CONZONE SAMUEL D ET AL: "Glass slides to DNA microarrays", MATERIALSTODAY, vol. 7, no. 3, 1 March 2004 (2004-03-01) - 23 February 2004 (2004-02-23), pages 20 - 26, XP055858548, Retrieved from the Internet <URL:https://www.sciencedirect.com/science/article/pii/S1369702104001221> [retrieved on 20211108] *
DUFVA ET AL: "Fabrication of high quality microarrays", BIOMOLECULAR ENGINEERING, ELSEVIER, NEW YORK, NY, US, vol. 22, no. 5-6, 1 December 2005 (2005-12-01), pages 173 - 184, XP027706877, ISSN: 1389-0344, [retrieved on 20051201] *
M.M. NIKITIN ET AL: "Matrix approach to the simultaneous detection of multiple potato pathogens by real-time PCR", JOURNAL OF APPLIED MICROBIOLOGY, vol. 124, no. 3, 11 February 2018 (2018-02-11), GB, pages 797 - 809, XP055534414, ISSN: 1364-5072, DOI: 10.1111/jam.13686 *
MUMFORD RICK ET AL: "Advances in molecular phytodiagnostics - new solutions for old problems", EUROPEAN JOURNAL OF PLANT PATHOLOGY, SPRINGER NETHERLANDS, NL, vol. 116, no. 1, 13 July 2006 (2006-07-13), pages 1 - 19, XP037067545, ISSN: 0929-1873, [retrieved on 20060713], DOI: 10.1007/S10658-006-9037-0 *
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TANG J ET AL: "Polymerizing immobilization of acrylamide-modified nucleic acids and its application", BIOSENSORS AND BIOELECTRONICS, ELSEVIER SCIENCE LTD, UK, AMSTERDAM , NL, vol. 24, no. 7, 15 March 2009 (2009-03-15), pages 1817 - 1824, XP025958938, ISSN: 0956-5663, [retrieved on 20080927], DOI: 10.1016/J.BIOS.2008.09.018 *

Also Published As

Publication number	Publication date
EP3762508A2 (en)	2021-01-13
CA3093451A1 (en)	2019-09-12
AU2019231794A1 (en)	2020-10-29
JP2021516995A (en)	2021-07-15
MX2020009282A (en)	2021-01-08
WO2019173695A3 (en)	2019-12-26
ZA202006213B (en)	2022-01-26
CN112154215A (en)	2020-12-29
KR20210028142A (en)	2021-03-11
WO2019173695A2 (en)	2019-09-12

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Legal Events

Date	Code	Title	Description
2019-09-14	STAA	Information on the status of an ep patent application or granted ep patent	Free format text: STATUS: THE INTERNATIONAL PUBLICATION HAS BEEN MADE
2020-12-11	PUAI	Public reference made under article 153(3) epc to a published international application that has entered the european phase	Free format text: ORIGINAL CODE: 0009012
2020-12-11	STAA	Information on the status of an ep patent application or granted ep patent	Free format text: STATUS: REQUEST FOR EXAMINATION WAS MADE
2021-01-13	17P	Request for examination filed	Effective date: 20201007
2021-01-13	AK	Designated contracting states	Kind code of ref document: A2 Designated state(s): AL AT BE BG CH CY CZ DE DK EE ES FI FR GB GR HR HU IE IS IT LI LT LU LV MC MK MT NL NO PL PT RO RS SE SI SK SM TR
2021-01-13	AX	Request for extension of the european patent	Extension state: BA ME
2021-06-16	DAV	Request for validation of the european patent (deleted)
2021-06-16	DAX	Request for extension of the european patent (deleted)
2021-12-15	A4	Supplementary search report drawn up and despatched	Effective date: 20211117
2021-12-15	RIC1	Information provided on ipc code assigned before grant	Ipc: G16B 25/30 20190101ALI20211111BHEP Ipc: G16B 25/20 20190101ALI20211111BHEP Ipc: G16B 20/10 20190101ALI20211111BHEP Ipc: G01N 33/533 20060101ALI20211111BHEP Ipc: C12Q 1/6895 20180101ALI20211111BHEP Ipc: C12Q 1/6893 20180101ALI20211111BHEP Ipc: C12Q 1/689 20180101ALI20211111BHEP Ipc: C12Q 1/6853 20180101ALI20211111BHEP Ipc: C12Q 1/6837 20180101ALI20211111BHEP Ipc: C12Q 1/6809 20180101AFI20211111BHEP
2025-07-18	STAA	Information on the status of an ep patent application or granted ep patent	Free format text: STATUS: EXAMINATION IS IN PROGRESS
2025-08-20	17Q	First examination report despatched	Effective date: 20250721