EP3010929A4 - Universal methylation profiling methods - Google Patents

Universal methylation profiling methods Download PDF

Info

Publication number: EP3010929A4
Authority: EP; European Patent Office
Prior art keywords: profiling methods; methylation profiling; universal; universal methylation; methods
Prior art date: 2013-06-17
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.): Withdrawn

Application number

EP14812900.0A

Other languages

German (de)

French (fr)

Other versions

EP3010929A1 (en

Inventor

Timothy H. Bestor

Jingyue Ju

Xiaoxu Li

Current Assignee (The listed assignees may be inaccurate. Google has not performed a legal analysis and makes no representation or warranty as to the accuracy of the list.)

Columbia University in the City of New York

Original Assignee

Columbia University in the City of New York

Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)

2013-06-17

Filing date

2014-06-16

Publication date

2017-02-22

2014-06-16 Application filed by Columbia University in the City of New York filed Critical Columbia University in the City of New York

2016-04-27 Publication of EP3010929A1 publication Critical patent/EP3010929A1/en

2017-02-22 Publication of EP3010929A4 publication Critical patent/EP3010929A4/en

Status Withdrawn legal-status Critical Current

Classifications

- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07H—SUGARS; DERIVATIVES THEREOF; NUCLEOSIDES; NUCLEOTIDES; NUCLEIC ACIDS
- C07H19/00—Compounds containing a hetero ring sharing one ring hetero atom with a saccharide radical; Nucleosides; Mononucleotides; Anhydro-derivatives thereof
- C07H19/02—Compounds containing a hetero ring sharing one ring hetero atom with a saccharide radical; Nucleosides; Mononucleotides; Anhydro-derivatives thereof sharing nitrogen
- C07H19/04—Heterocyclic radicals containing only nitrogen atoms as ring hetero atom
- C07H19/16—Purine radicals
- C07H19/167—Purine radicals with ribosyl as the saccharide radical
- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07H—SUGARS; DERIVATIVES THEREOF; NUCLEOSIDES; NUCLEOTIDES; NUCLEIC ACIDS
- C07H1/00—Processes for the preparation of sugar derivatives
- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07H—SUGARS; DERIVATIVES THEREOF; NUCLEOSIDES; NUCLEOTIDES; NUCLEIC ACIDS
- C07H21/00—Compounds containing two or more mononucleotide units having separate phosphate or polyphosphate groups linked by saccharide radicals of nucleoside groups, e.g. nucleic acids
- C07H21/04—Compounds containing two or more mononucleotide units having separate phosphate or polyphosphate groups linked by saccharide radicals of nucleoside groups, e.g. nucleic acids with deoxyribosyl as saccharide radical
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6869—Methods for sequencing
- C12Q1/6874—Methods for sequencing involving nucleic acid arrays, e.g. sequencing by hybridisation

Landscapes

Chemical & Material Sciences (AREA)
Organic Chemistry (AREA)
Life Sciences & Earth Sciences (AREA)
Health & Medical Sciences (AREA)
Engineering & Computer Science (AREA)
Biochemistry (AREA)
Molecular Biology (AREA)
General Health & Medical Sciences (AREA)
Genetics & Genomics (AREA)
Biotechnology (AREA)
Proteomics, Peptides & Aminoacids (AREA)
Wood Science & Technology (AREA)
Zoology (AREA)
Biophysics (AREA)
Microbiology (AREA)
Immunology (AREA)
Bioinformatics & Cheminformatics (AREA)
General Engineering & Computer Science (AREA)
Analytical Chemistry (AREA)
Physics & Mathematics (AREA)
Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)

EP14812900.0A 2013-06-17 2014-06-16 Universal methylation profiling methods Withdrawn EP3010929A4 (en)

Applications Claiming Priority (2)

Application Number	Priority Date	Filing Date	Title
US201361836060P	2013-06-17	2013-06-17
PCT/US2014/042567 WO2014204861A1 (en)	2013-06-17	2014-06-16	Universal methylation profiling methods

Publications (2)

Publication Number	Publication Date
EP3010929A1 EP3010929A1 (en)	2016-04-27
EP3010929A4 true EP3010929A4 (en)	2017-02-22

Family

ID=52105162

Family Applications (1)

Application Number	Title	Priority Date	Filing Date
EP14812900.0A Withdrawn EP3010929A4 (en)	2013-06-17	2014-06-16	Universal methylation profiling methods

Country Status (3)

Country	Link
EP (1)	EP3010929A4 (en)
CN (1)	CN105408342A (en)
WO (1)	WO2014204861A1 (en)

Families Citing this family (1)

* Cited by examiner, † Cited by third party
Publication number	Priority date	Publication date	Assignee	Title
US10337049B2 (en) *	2013-06-17	2019-07-02	The Trustees Of Columbia University In The City Of New York	Universal methylation profiling methods

Citations (2)

* Cited by examiner, † Cited by third party
Publication number	Priority date	Publication date	Assignee	Title
US20090018101A1 (en) *	2005-04-14	2009-01-15	Rwth Aachen	S-adenosyl-l-methionine analogs with extended activated groups for transfer by methyltransferases
US20110177508A1 (en) *	2008-07-22	2011-07-21	Bestor Timothy H	Universal methylation profiling methods

Family Cites Families (6)

* Cited by examiner, † Cited by third party
Publication number	Priority date	Publication date	Assignee	Title
US3726821A (en) *	1968-12-23	1973-04-10	Dow Chemical Co	Wash-resistant antistatic coating compositions
US4267171A (en) *	1979-07-02	1981-05-12	The Regents Of The University Of California	C-5 Substituted cytosine nucleosides
GB9602025D0 (en) *	1996-02-01	1996-04-03	Amersham Int Plc	Nucleoside analogues
US20080103053A1 (en) *	2005-11-22	2008-05-01	Helicos Biosciences Corporation	Methods and compositions for sequencing a nucleic acid
WO2009078876A1 (en) *	2007-12-18	2009-06-25	Bellbrook Labs, Llc	Assay method for group transfer reactions
WO2009096501A1 (en) *	2008-01-30	2009-08-06	Dow Corning Toray Co., Ltd.	Silicon-containing particle, process for producing the same, organic-polymer composition, ceramic, and process for producing the same

2014
- 2014-06-16 CN CN201480040965.1A patent/CN105408342A/en active Pending
- 2014-06-16 EP EP14812900.0A patent/EP3010929A4/en not_active Withdrawn
- 2014-06-16 WO PCT/US2014/042567 patent/WO2014204861A1/en not_active Ceased

Patent Citations (2)

* Cited by examiner, † Cited by third party
Publication number	Priority date	Publication date	Assignee	Title
US20090018101A1 (en) *	2005-04-14	2009-01-15	Rwth Aachen	S-adenosyl-l-methionine analogs with extended activated groups for transfer by methyltransferases
US20110177508A1 (en) *	2008-07-22	2011-07-21	Bestor Timothy H	Universal methylation profiling methods

Non-Patent Citations (2)

* Cited by examiner, † Cited by third party
Title
HARALD STECHER ET AL: "Biocatalytic Friedel-Crafts Alkylation Using Non-natural Cofactors", ANGEWANDTE CHEMIE INTERNATIONAL EDITION, vol. 48, no. 50, 7 December 2009 (2009-12-07), pages 9546 - 9548, XP055048957, ISSN: 1433-7851, DOI: 10.1002/anie.200905095 *
See also references of WO2014204861A1 *

Also Published As

Publication number	Publication date
CN105408342A (en)	2016-03-16
EP3010929A1 (en)	2016-04-27
WO2014204861A1 (en)	2014-12-24

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Legal Events

Date	Code	Title	Description
2016-03-25	PUAI	Public reference made under article 153(3) epc to a published international application that has entered the european phase	Free format text: ORIGINAL CODE: 0009012
2016-04-27	17P	Request for examination filed	Effective date: 20160115
2016-04-27	AK	Designated contracting states	Kind code of ref document: A1 Designated state(s): AL AT BE BG CH CY CZ DE DK EE ES FI FR GB GR HR HU IE IS IT LI LT LU LV MC MK MT NL NO PL PT RO RS SE SI SK SM TR
2016-04-27	AX	Request for extension of the european patent	Extension state: BA ME
2016-11-23	RIC1	Information provided on ipc code assigned before grant	Ipc: C07H 1/00 20060101ALI20161017BHEP Ipc: C07H 19/167 20060101AFI20161017BHEP Ipc: C07H 21/04 20060101ALI20161017BHEP Ipc: C12Q 1/68 20060101ALI20161017BHEP
2017-02-22	A4	Supplementary search report drawn up and despatched	Effective date: 20170124
2017-02-22	RIC1	Information provided on ipc code assigned before grant	Ipc: C07H 19/167 20060101AFI20170118BHEP Ipc: C07H 21/04 20060101ALI20170118BHEP Ipc: C12Q 1/68 20060101ALI20170118BHEP Ipc: C07H 1/00 20060101ALI20170118BHEP
2018-01-19	STAA	Information on the status of an ep patent application or granted ep patent	Free format text: STATUS: THE APPLICATION IS DEEMED TO BE WITHDRAWN
2018-02-21	18D	Application deemed to be withdrawn	Effective date: 20170822