[go: up one dir, main page]

DK3077943T3 - Fremgangsmåder og systemer til analyse af billeddata - Google Patents

Fremgangsmåder og systemer til analyse af billeddata Download PDF

Info

Publication number
DK3077943T3
DK3077943T3 DK14867596.0T DK14867596T DK3077943T3 DK 3077943 T3 DK3077943 T3 DK 3077943T3 DK 14867596 T DK14867596 T DK 14867596T DK 3077943 T3 DK3077943 T3 DK 3077943T3
Authority
DK
Denmark
Prior art keywords
methods
analysis
image data
image
data
Prior art date
Application number
DK14867596.0T
Other languages
Danish (da)
English (en)
Inventor
Paul Belitz
Stephen Tanner
John S Vieceli
Xiaoyu Chen
Original Assignee
Illumina Inc
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Illumina Inc filed Critical Illumina Inc
Application granted granted Critical
Publication of DK3077943T3 publication Critical patent/DK3077943T3/da

Links

Classifications

    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6869—Methods for sequencing
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B30/00—ICT specially adapted for sequence analysis involving nucleotides or amino acids
    • Y—GENERAL TAGGING OF NEW TECHNOLOGICAL DEVELOPMENTS; GENERAL TAGGING OF CROSS-SECTIONAL TECHNOLOGIES SPANNING OVER SEVERAL SECTIONS OF THE IPC; TECHNICAL SUBJECTS COVERED BY FORMER USPC CROSS-REFERENCE ART COLLECTIONS [XRACs] AND DIGESTS
    • Y02—TECHNOLOGIES OR APPLICATIONS FOR MITIGATION OR ADAPTATION AGAINST CLIMATE CHANGE
    • Y02A—TECHNOLOGIES FOR ADAPTATION TO CLIMATE CHANGE
    • Y02A90/00—Technologies having an indirect contribution to adaptation to climate change
    • Y02A90/10—Information and communication technologies [ICT] supporting adaptation to climate change, e.g. for weather forecasting or climate simulation

Landscapes

  • Life Sciences & Earth Sciences (AREA)
  • Chemical & Material Sciences (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Organic Chemistry (AREA)
  • Engineering & Computer Science (AREA)
  • Health & Medical Sciences (AREA)
  • Physics & Mathematics (AREA)
  • Zoology (AREA)
  • Wood Science & Technology (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Biotechnology (AREA)
  • General Health & Medical Sciences (AREA)
  • Biophysics (AREA)
  • Analytical Chemistry (AREA)
  • Genetics & Genomics (AREA)
  • General Engineering & Computer Science (AREA)
  • Biochemistry (AREA)
  • Immunology (AREA)
  • Microbiology (AREA)
  • Molecular Biology (AREA)
  • Bioinformatics & Computational Biology (AREA)
  • Spectroscopy & Molecular Physics (AREA)
  • Medical Informatics (AREA)
  • Evolutionary Biology (AREA)
  • Theoretical Computer Science (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
  • Apparatus Associated With Microorganisms And Enzymes (AREA)
  • Chemical Kinetics & Catalysis (AREA)
  • Image Processing (AREA)
  • Investigating Or Analysing Biological Materials (AREA)
  • General Physics & Mathematics (AREA)
  • Mathematical Analysis (AREA)
  • Mathematical Optimization (AREA)
  • Mathematical Physics (AREA)
  • Pure & Applied Mathematics (AREA)
  • Algebra (AREA)
DK14867596.0T 2013-12-03 2014-12-03 Fremgangsmåder og systemer til analyse af billeddata DK3077943T3 (da)

Applications Claiming Priority (4)

Application Number Priority Date Filing Date Title
US201361911319P 2013-12-03 2013-12-03
US201361915455P 2013-12-12 2013-12-12
US201361915426P 2013-12-12 2013-12-12
PCT/US2014/068409 WO2015084985A2 (en) 2013-12-03 2014-12-03 Methods and systems for analyzing image data

Publications (1)

Publication Number Publication Date
DK3077943T3 true DK3077943T3 (da) 2020-09-07

Family

ID=53274278

Family Applications (1)

Application Number Title Priority Date Filing Date
DK14867596.0T DK3077943T3 (da) 2013-12-03 2014-12-03 Fremgangsmåder og systemer til analyse af billeddata

Country Status (16)

Country Link
US (3) US10689696B2 (es)
EP (3) EP3715467A1 (es)
AU (3) AU2014360530B2 (es)
CA (2) CA3181696A1 (es)
CY (1) CY1123264T1 (es)
DK (1) DK3077943T3 (es)
ES (1) ES2808824T3 (es)
HR (1) HRP20201397T1 (es)
HU (1) HUE050641T2 (es)
LT (1) LT3077943T (es)
PL (1) PL3077943T3 (es)
PT (1) PT3077943T (es)
RS (1) RS60736B1 (es)
SI (1) SI3077943T1 (es)
SM (1) SMT202000434T1 (es)
WO (1) WO2015084985A2 (es)

Families Citing this family (36)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US10648027B2 (en) 2016-08-08 2020-05-12 Roche Sequencing Solutions, Inc. Basecalling for stochastic sequencing processes
EP3566158B1 (en) * 2017-01-06 2022-04-20 Illumina, Inc. Phasing correction
CN113791229B (zh) 2018-01-05 2024-07-26 因美纳有限公司 测序系统中试剂冷却液不稳定性和流动池加热器故障的预测
US11288576B2 (en) 2018-01-05 2022-03-29 Illumina, Inc. Predicting quality of sequencing results using deep neural networks
NL2020621B1 (en) 2018-01-08 2019-07-15 Illumina Inc Multiplexing of an active sensor detector using structured illumination
CA3065934A1 (en) 2018-01-08 2019-07-11 Illumina, Inc. High-throughput sequencing with semiconductor-based detection
US11378544B2 (en) * 2018-01-08 2022-07-05 Illumina, Inc. High-throughput sequencing with semiconductor-based detection
CN108629765B (zh) * 2018-04-20 2020-09-08 山东第一医科大学(山东省医学科学院) 基于序列阈值差的精子显微视频序列滤波质量客观评价方法
NL2023312B1 (en) 2019-03-21 2020-09-28 Illumina Inc Artificial intelligence-based base calling
NL2023314B1 (en) 2019-03-21 2020-09-28 Illumina Inc Artificial intelligence-based quality scoring
WO2020191387A1 (en) 2019-03-21 2020-09-24 Illumina, Inc. Artificial intelligence-based base calling
NL2023316B1 (en) * 2019-03-21 2020-09-28 Illumina Inc Artificial intelligence-based sequencing
US11676685B2 (en) 2019-03-21 2023-06-13 Illumina, Inc. Artificial intelligence-based quality scoring
US11210554B2 (en) 2019-03-21 2021-12-28 Illumina, Inc. Artificial intelligence-based generation of sequencing metadata
US11423306B2 (en) 2019-05-16 2022-08-23 Illumina, Inc. Systems and devices for characterization and performance analysis of pixel-based sequencing
US11593649B2 (en) 2019-05-16 2023-02-28 Illumina, Inc. Base calling using convolutions
US12354008B2 (en) 2020-02-20 2025-07-08 Illumina, Inc. Knowledge distillation and gradient pruning-based compression of artificial intelligence-based base caller
IL295560A (en) 2020-02-20 2022-10-01 Illumina Inc Artificial intelligence-based many-to-many base calling
US20210265016A1 (en) 2020-02-20 2021-08-26 Illumina, Inc. Data Compression for Artificial Intelligence-Based Base Calling
US11188778B1 (en) 2020-05-05 2021-11-30 Illumina, Inc. Equalization-based image processing and spatial crosstalk attenuator
US20220067489A1 (en) * 2020-08-28 2022-03-03 Illumina, Inc. Detecting and Filtering Clusters Based on Artificial Intelligence-Predicted Base Calls
US11200446B1 (en) 2020-08-31 2021-12-14 Element Biosciences, Inc. Single-pass primary analysis
US12469162B2 (en) 2020-08-31 2025-11-11 Element Biosciences, Inc. Primary analysis in next generation sequencing
US11361194B2 (en) 2020-10-27 2022-06-14 Illumina, Inc. Systems and methods for per-cluster intensity correction and base calling
US12217829B2 (en) 2021-04-15 2025-02-04 Illumina, Inc. Artificial intelligence-based analysis of protein three-dimensional (3D) structures
US20220336057A1 (en) 2021-04-15 2022-10-20 Illumina, Inc. Efficient voxelization for deep learning
BR112023026615A2 (pt) 2021-06-29 2024-03-05 Illumina Inc Métrica de relação sinal-ruído para determinar chamadas de bases de nucleotídeos e qualidade de chamadas de bases
US11455487B1 (en) 2021-10-26 2022-09-27 Illumina Software, Inc. Intensity extraction and crosstalk attenuation using interpolation and adaptation for base calling
WO2023003757A1 (en) 2021-07-19 2023-01-26 Illumina Software, Inc. Intensity extraction with interpolation and adaptation for base calling
WO2023004065A1 (en) * 2021-07-23 2023-01-26 Illumina, Inc. Characterizing analytes in a sample using normalized signals
WO2023049215A1 (en) * 2021-09-22 2023-03-30 Illumina, Inc. Compressed state-based base calling
US12412387B2 (en) 2021-09-22 2025-09-09 Illumina, Inc. State-based base calling
KR20240116364A (ko) * 2021-12-02 2024-07-29 일루미나, 인코포레이티드 뉴클레오티드 염기 호출을 결정하기 위한 클러스터별 신호 교정 생성
EP4588051A1 (en) 2022-09-16 2025-07-23 Illumina, Inc. Cluster segmentation and conditional base calling
US20250210137A1 (en) 2023-12-20 2025-06-26 Illumina, Inc. Directly determining signal-to-noise-ratio metrics for accelerated convergence in determining nucleotide-base calls and base-call quality
WO2025190902A1 (en) 2024-03-13 2025-09-18 Illumina, Inc. Improving base calling quality scores

Family Cites Families (32)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
WO1991006678A1 (en) 1989-10-26 1991-05-16 Sri International Dna sequencing
US5846719A (en) 1994-10-13 1998-12-08 Lynx Therapeutics, Inc. Oligonucleotide tags for sorting and identification
US5750341A (en) 1995-04-17 1998-05-12 Lynx Therapeutics, Inc. DNA sequencing by parallel oligonucleotide extensions
US5916747A (en) 1995-06-30 1999-06-29 Visible Genetics Inc. Method and apparatus for alignment of signals for use in DNA based-calling
GB9620209D0 (en) 1996-09-27 1996-11-13 Cemu Bioteknik Ab Method of sequencing DNA
GB9626815D0 (en) 1996-12-23 1997-02-12 Cemu Bioteknik Ab Method of sequencing DNA
DE69837913T2 (de) 1997-04-01 2008-02-07 Solexa Ltd., Saffron Walden Verfahren zur vervielfältigung von nukleinsäure
US6969488B2 (en) 1998-05-22 2005-11-29 Solexa, Inc. System and apparatus for sequential processing of analytes
US6274320B1 (en) 1999-09-16 2001-08-14 Curagen Corporation Method of sequencing a nucleic acid
US7001792B2 (en) 2000-04-24 2006-02-21 Eagle Research & Development, Llc Ultra-fast nucleic acid sequencing device and a method for making and using the same
CN100462433C (zh) 2000-07-07 2009-02-18 维西根生物技术公司 实时序列测定
EP1354064A2 (en) 2000-12-01 2003-10-22 Visigen Biotechnologies, Inc. Enzymatic nucleic acid synthesis: compositions and methods for altering monomer incorporation fidelity
US7057026B2 (en) 2001-12-04 2006-06-06 Solexa Limited Labelled nucleotides
DK3002289T3 (en) 2002-08-23 2018-04-23 Illumina Cambridge Ltd MODIFIED NUCLEOTIDES FOR POLYNUCLEOTIDE SEQUENCE
GB0321306D0 (en) 2003-09-11 2003-10-15 Solexa Ltd Modified polymerases for improved incorporation of nucleotide analogues
WO2005065814A1 (en) 2004-01-07 2005-07-21 Solexa Limited Modified molecular arrays
US7315019B2 (en) 2004-09-17 2008-01-01 Pacific Biosciences Of California, Inc. Arrays of optical confinements and uses thereof
EP1828412B2 (en) 2004-12-13 2019-01-09 Illumina Cambridge Limited Improved method of nucleotide detection
EP1888743B1 (en) 2005-05-10 2011-08-03 Illumina Cambridge Limited Improved polymerases
GB0514936D0 (en) 2005-07-20 2005-08-24 Solexa Ltd Preparation of templates for nucleic acid sequencing
US7405281B2 (en) 2005-09-29 2008-07-29 Pacific Biosciences Of California, Inc. Fluorescent nucleotide analogs and uses therefor
EP3722409A1 (en) 2006-03-31 2020-10-14 Illumina, Inc. Systems and devices for sequence by synthesis analysis
US8343746B2 (en) 2006-10-23 2013-01-01 Pacific Biosciences Of California, Inc. Polymerase enzymes and reagents for enhanced nucleic acid sequencing
US20100034444A1 (en) 2008-08-07 2010-02-11 Helicos Biosciences Corporation Image analysis
WO2010039553A1 (en) 2008-10-03 2010-04-08 Illumina, Inc. Method and system for determining the accuracy of dna base identifications
US8965076B2 (en) 2010-01-13 2015-02-24 Illumina, Inc. Data processing system and methods
US20130060482A1 (en) * 2010-12-30 2013-03-07 Life Technologies Corporation Methods, systems, and computer readable media for making base calls in nucleic acid sequencing
US8951781B2 (en) 2011-01-10 2015-02-10 Illumina, Inc. Systems, methods, and apparatuses to image a sample for biological or chemical analysis
PL3623481T3 (pl) 2011-09-23 2022-01-17 Illumina, Inc. Kompozycje do sekwencjonowania kwasów nukleinowych
EP2788499B1 (en) * 2011-12-09 2016-01-13 Illumina, Inc. Expanded radix for polymeric tags
CA3138752C (en) 2012-04-03 2024-02-06 Illumina, Inc. Integrated optoelectronic read head and fluidic cartridge useful for nucleic acid sequencing
WO2016044233A1 (en) 2014-09-18 2016-03-24 Illumina, Inc. Methods and systems for analyzing nucleic acid sequencing data

Also Published As

Publication number Publication date
AU2020277261B2 (en) 2022-11-10
ES2808824T3 (es) 2021-03-02
US20210310065A1 (en) 2021-10-07
CA2928209A1 (en) 2015-06-11
WO2015084985A3 (en) 2015-07-30
HUE050641T2 (hu) 2020-12-28
HRP20201397T1 (hr) 2020-11-27
AU2014360530A1 (en) 2016-04-28
EP3077943A4 (en) 2017-06-28
EP3077943A2 (en) 2016-10-12
LT3077943T (lt) 2020-10-12
CY1123264T1 (el) 2021-12-31
AU2023200758A1 (en) 2023-03-09
US20180274023A1 (en) 2018-09-27
CA3181696A1 (en) 2015-06-11
US20200377938A1 (en) 2020-12-03
EP3940082A1 (en) 2022-01-19
RS60736B1 (sr) 2020-09-30
PT3077943T (pt) 2020-08-21
EP3715467A1 (en) 2020-09-30
PL3077943T3 (pl) 2020-11-30
CA2928209C (en) 2023-09-26
AU2020277261A1 (en) 2021-01-07
SI3077943T1 (sl) 2020-10-30
WO2015084985A2 (en) 2015-06-11
US10689696B2 (en) 2020-06-23
EP3077943B1 (en) 2020-06-03
AU2014360530B2 (en) 2020-09-03
SMT202000434T1 (it) 2020-09-10

Similar Documents

Publication Publication Date Title
DK3077943T3 (da) Fremgangsmåder og systemer til analyse af billeddata
DK3171765T3 (da) Indsamling og analyse af data til diagnostiske formål
DK3055803T3 (da) Sporing og analyse af kliniske resultater
DK3069205T3 (da) Fremgangsmåde og apparat til opnåelse af termiske egenskabsdata
DK3110975T3 (da) Fremgangsmåder til analyse af somatiske mobile elementer og anvendelser deraf
EP3684139A4 (en) DATA ANALYSIS PROCESS AND DEVICE
DK3253911T3 (da) Fremgangsmåder og anordninger til analyse af partikler
DK3540429T3 (da) Indretning og fremgangsmåder til anvendelse af indretning til detektion af hyperammoniæmi
DK4071469T3 (da) Fremgangsmåder til analyse af kromatografidata
DK3069279T3 (da) Indretninger og fremgangsmåder til kontinuerlig analytovervågning
EP2972976A4 (en) COLLECTION AND ASSIGNMENT OF MEASUREMENT DATA
DK3063919T3 (da) System og fremgangsmåde til håndtering af fortrolige data
DK3084345T3 (da) Indretning og fremgangsmåde til optisk tomografi
DK3079719T3 (da) ANTI-SIGLEC-8-antistoffer og fremgangsmåder til anvendelse deraf
DK2967018T3 (da) Apparat og fremgangsmåde til indfangning af akvatiske dyr
DK3086807T3 (da) Antistoffer og fremgangsmåder til anvendelse
DK2900349T3 (da) Devolatiliseringsapparat og fremgangsmåde til anvendelse deraf
DK2950910T3 (da) Carbonopsamlingsopløsningsmidler og fremgangsmåder til anvendelse af sådanne opløsningsmidler
EP3572959A4 (en) DATA ANALYSIS PROCESS AND DEVICE
DK2973924T3 (da) Spændingsoptimering under anvendelse af en AMI-baseret datastyring og analyse
DK2979399T3 (da) Fremgangsmåde og anordning til justering af latenstid
DK3017315T3 (da) Systemer og fremgangsmåder til mærkning af crowd sourced data
DK2978220T3 (da) Anordning og fremgangsmåde til afkodning af billede patentkrav
DK3071956T3 (da) Afstandsdetektering og analyse af genstande
DK3155543T3 (da) Databehandlingsenhed og fremgangsmåde til evaluering af massespektrometridata