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CN111719015A - A detection kit for human immunodeficiency virus HIV-1 - Google Patents

A detection kit for human immunodeficiency virus HIV-1 Download PDF

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CN111719015A
CN111719015A CN202010436839.5A CN202010436839A CN111719015A CN 111719015 A CN111719015 A CN 111719015A CN 202010436839 A CN202010436839 A CN 202010436839A CN 111719015 A CN111719015 A CN 111719015A
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王昆华
鲁丹枫
况轶群
谢振荣
李少遊
王悦欣
耿世涛
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First Affiliated Hospital of Kunming Medical University
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Abstract

本发明公开一种人类免疫缺陷病毒HIV‑1的检测试剂盒,属于HIV分子生物检测技术领域。该试剂盒包括上游引物、下游引物、与引物配合使用的探针、阴性对照模板、阳性对照模板、标准品模板、RAA等温核酸扩增试剂、10x NEB Buffer2.1、40U/μL的RNase抑制剂、2M的DTT及2μM的EnGen Lba Cpf1核酸酶。采用试剂盒进行检测,反应速度快,整个检测过程不到2个小时;且只需要提取病毒DNA,操作步骤少且简便,能够有效地避免污染;同时,检测灵敏度高,能检测到10拷贝的病毒DNA,大大提高工作效率,降低了检测成本。The invention discloses a detection kit for human immunodeficiency virus HIV-1, which belongs to the technical field of HIV molecular biological detection. The kit includes upstream primers, downstream primers, probes used with primers, negative control template, positive control template, standard template, RAA isothermal nucleic acid amplification reagent, 10x NEB Buffer2.1, 40U/μL RNase inhibitor , 2M DTT and 2μM EnGen Lba Cpf1 nuclease. The kit is used for detection, the reaction speed is fast, and the whole detection process takes less than 2 hours; and only the virus DNA needs to be extracted, the operation steps are few and simple, which can effectively avoid pollution; at the same time, the detection sensitivity is high, and 10 copies can be detected. Viral DNA greatly improves work efficiency and reduces detection costs.

Description

一种人类免疫缺陷病毒HIV-1的检测试剂盒A detection kit for human immunodeficiency virus HIV-1

技术领域technical field

本发明涉及一种人类免疫缺陷病毒HIV-1的检测试剂盒,属于HIV分子生物学检测技术领域。The invention relates to a detection kit for human immunodeficiency virus HIV-1, which belongs to the technical field of HIV molecular biology detection.

背景技术Background technique

艾滋病(acquired immune deficiency syndrome,AIDS)是一种危害极大的病毒性传染疾病,严重威胁着全球公共卫生。目前全世界约有3700万人已感染人类免疫缺陷病毒(human immunodeficiency virus,HIV),且每年新增加约180万感染者。我国自1989年在云南省瑞丽市首次发现吸毒人群感染HIV/AIDS以来,吸毒途径一直是我国感染艾滋病的主要途径之一,特别是在注射吸毒人群中由于共用针具、共用棉球等高危行为的存在,使其更易成为艾滋病的受累人群。我国吸毒人群及其艾滋病感染分布多与地理位置分布有关。由于毗邻著名的毒品生产基地“金三角”,云南省的吸毒现象较内地更普遍。AIDS (acquired immune deficiency syndrome, AIDS) is a very harmful viral infectious disease, a serious threat to global public health. At present, about 37 million people in the world have been infected with human immunodeficiency virus (human immunodeficiency virus, HIV), and about 1.8 million new infections are added every year. Since the first discovery of HIV/AIDS among drug users in Ruili City, Yunnan Province in 1989, drug use has always been one of the main ways of contracting AIDS in my country, especially among injecting drug users due to high-risk behaviors such as sharing needles and cotton balls. The existence of AIDS makes it more likely to become an affected population of AIDS. The distribution of drug users and their HIV infection in my country is mostly related to geographical distribution. Due to its proximity to the "Golden Triangle", a famous drug production base, drug use is more common in Yunnan than in the mainland.

高效抗逆转录病毒疗法(highly active antiretroviral therapy,HAART)能有效地控制血浆中HIV-1病毒复制,抑制HIV-1病毒到不可检测水平,但是ART不能清除潜伏病毒库。潜伏病毒库是ART治疗中断后病毒再爆发的主要来源,是清除潜伏的HIV-1病毒的主要障碍。在AIDS的SIV(simian immunodeficiency virus)模型中证实在病毒感染后1-3天内就建立了病毒库,因此即使HIV-1病毒感染3天后就使用HAART治疗,也不能阻止持续感染的建立。因此,需要开发新型的HIV病毒潜伏库检测手段,为“功能”治愈HIV/AIDS患者打下技术基础。Highly active antiretroviral therapy (HAART) can effectively control HIV-1 virus replication in plasma and inhibit HIV-1 virus to undetectable levels, but ART cannot clear the latent virus reservoir. The latent virus reservoir is the main source of viral re-emergence after interruption of ART treatment and a major obstacle to the clearance of latent HIV-1 virus. In the SIV (simian immunodeficiency virus) model of AIDS, it was confirmed that the virus reservoir was established within 1-3 days after virus infection, so even HAART treatment after 3 days of HIV-1 virus infection could not prevent the establishment of persistent infection. Therefore, it is necessary to develop a new detection method for HIV virus latent reservoirs to lay a technical foundation for the "functional" cure of HIV/AIDS patients.

与蛋白免疫检测相比,基于分子(核酸)的诊断检测有众多优势,特别是在检测灵敏度和特异型方面。但是,传统的核酸检测(nucleic acid-based tests,NATs)需要处理大量的样本、训练有素的操作人员及专门的设备。现场检测(on-site detection)病原体和其他疾病标志物可以提高医疗质量,降低医疗成本。HIV诊断的金标准是DNA PCR,DNA PCR能检测存在于周边血单核细胞中的前病毒DNA。即使当HIV病毒载量被抑制到很低的水平,HIVDNA检测也是可靠的。不幸的是,HIV DNA PCR不适合在贫困地区进行,因为PCR需要昂贵的设备、电力、专门的实验室空间及训练有素的技术人员。因此,需要一种基于DNA检测的即时(point-of-care)HIV检测技术,它可以快速提供结果,使更多的患者能够了解他们的HIV状况并更快地开始治疗。与其它常规的分子方法相比,等温扩增技术具有快速、操作简单及花费低的优点,非常适合于临床应用。Molecular (nucleic acid)-based diagnostic tests have numerous advantages over protein immunoassays, especially in terms of detection sensitivity and specificity. However, traditional nucleic acid-based tests (NATs) require the processing of large numbers of samples, well-trained operators, and specialized equipment. On-site detection of pathogens and other disease markers can improve the quality of care and reduce healthcare costs. The gold standard for HIV diagnosis is DNA PCR, which detects proviral DNA present in peripheral blood mononuclear cells. HIV DNA testing is reliable even when HIV viral load is suppressed to very low levels. Unfortunately, HIV DNA PCR is not suitable for performing in poor areas because PCR requires expensive equipment, electricity, dedicated laboratory space, and trained technicians. Therefore, there is a need for a DNA-based point-of-care HIV testing technology that can provide results quickly, enabling more patients to understand their HIV status and start treatment sooner. Compared with other conventional molecular methods, isothermal amplification technology has the advantages of rapidity, simple operation and low cost, and is very suitable for clinical application.

目前,病毒感染诊断一般包括病毒分离和鉴定、病毒核酸和抗原的直接检出以及特异性抗体的检测,不仅耗时长,而且对医疗设备和操作人员的专业水准要求很高。因此,如果能开发出一种不需依赖贵重设备和医护人员的智能诊断设备显得非常重要,尤其对于病毒感染经常肆意横行的发展中国家。常规的HIV感染检测方法是通过酶联免疫检测(ELISA)来检测人血清或血浆中是否存在抗病毒抗体;因为机体需要一定的时间才能产生特异性免疫反应,因此在病毒感染的前1~3个月(“窗口期”)中,可能根本检测不到抗体;而检测病毒的核酸可以大大缩短检测的窗口期。At present, the diagnosis of viral infection generally includes virus isolation and identification, direct detection of viral nucleic acid and antigen, and detection of specific antibodies, which is not only time-consuming, but also requires high professional standards of medical equipment and operators. Therefore, it is very important to develop an intelligent diagnostic device that does not need to rely on expensive equipment and medical staff, especially for developing countries where viral infections often run rampant. The conventional HIV infection detection method is to detect the presence of antiviral antibodies in human serum or plasma by enzyme-linked immunosorbent assay (ELISA). During the month ("window period"), antibodies may not be detected at all; while the detection of viral nucleic acid can greatly shorten the detection window period.

发明内容SUMMARY OF THE INVENTION

本发明的目的在于提供一种用于人类免疫缺陷病毒HIV DNA进行定性检测的引物、探针以及检测试剂盒,通过提取待检样品基因组DNA,并结合等温核酸扩增技术和CRISPR技术,可准确定性待检样品中HIV DNA。本发明所提供的引物、探针和检测试剂盒不仅可用于对HIV的临床检测,还可以用于对被HIV感染的患者中HIV DNA的定性分析,将在我国HIV/AIDS的防控工作中发挥重要作用。The purpose of the present invention is to provide a primer, a probe and a detection kit for qualitative detection of human immunodeficiency virus HIV DNA. To characterize HIV DNA in samples to be tested. The primers, probes and detection kits provided by the invention can not only be used for clinical detection of HIV, but also can be used for qualitative analysis of HIV DNA in HIV-infected patients, and will be used in the prevention and control of HIV/AIDS in my country. Play an important role.

上述目的通过以下技术方案实现,The above purpose is achieved through the following technical solutions:

一种人类免疫缺陷病毒HIV-1的检测试剂盒,包括DNA的等温扩增-CRISPR技术检测引物和探针:A detection kit for human immunodeficiency virus HIV-1, including DNA isothermal amplification-CRISPR technology detection primers and probes:

所述HIV体外等温核酸扩增-CRISPR的特异性引物,包括上游引物HIV-RAA_F和下游引物HIV-RAA_R;The specific primers of the HIV in vitro isothermal nucleic acid amplification-CRISPR, including the upstream primer HIV-RAA_F and the downstream primer HIV-RAA_R;

上游引物HIV-RAA_F:TACTTCAAGAACTGCTGACATCGAGCTTGCTAC;(SEQ ID NO.1)。Upstream primer HIV-RAA_F: TACTTCAAGAACTGCTGACATCGAGCTTGCTAC; (SEQ ID NO. 1).

下游引物HIV-RAA_R:CGCCACTGCTAGAGATTTTCCACACTGACT;(SEQ ID NO.2)。Downstream primer HIV-RAA_R: CGCCACTGCTAGAGATTTTCCACACTGACT; (SEQ ID NO. 2).

所述探针核苷酸序列为:TTTCCACACTGACTAAAAGGGTCT(SEQ ID NO.3)。The probe nucleotide sequence is: TTTCCACACTGACTAAAAGGGTCT (SEQ ID NO. 3).

本发明还提供与上述引物配合使用的ssDNA-FQ报告基因探针,所述的探针核苷酸序列为:FAM-TTATT-BHQ1(SEQ ID NO.4)。The present invention also provides a ssDNA-FQ reporter gene probe used in combination with the above primers, and the nucleotide sequence of the probe is: FAM-TTATT-BHQ1 (SEQ ID NO. 4).

进一步,优选的,本发明所述人类免疫缺陷病毒HIV-1的检测试剂盒还包括阴性对照模板、阳性对照模板、RAA等温核酸扩增试剂、10x NEB Buffer2.1、40U/μL的RNase抑制剂、2M的DTT及2μM的EnGen Lba Cpf1核酸酶。Further, preferably, the detection kit for human immunodeficiency virus HIV-1 of the present invention further includes a negative control template, a positive control template, RAA isothermal nucleic acid amplification reagent, 10x NEB Buffer2.1, and 40U/μL of RNase inhibitor , 2M DTT and 2μM EnGen Lba Cpf1 nuclease.

所述的阴性对照模板为Ribozyme-free水和pUC57-HBV质粒;所述的阳性对照模板为pUC57-HIV LTR质粒。当体外等温核酸扩增-CRISPR检测体系以阴性对照模板进行反应时,所述的模板为Riboz yme-free水和已知浓度的pUC57-HBV质粒;当体外等温核酸扩增-CRISPR检测体系以阳性对照模板进行反应时,所述的模板为pUC57-HIV LTR质粒;体外等温核酸扩增-CRISPR检测体系以待检样品模板进行反应时,所述的模板为从疑似HIV感染者的血液中抽提的病毒基因组DNA。利用本发明提供的引物和探针对阴性对照模板、阳性对照模板以及待检样品模板进行体外等温核酸扩增-CRISPR检测,终止反应后在VICTOR Nivo酶标仪上,激发波长535nm,发射波长575nm,收集荧光值,待检样品模板荧光值减去空白孔荧光值得到最终荧光值,待检样品的最终荧光值小于等于0的时候判读为没有检测到病毒(检测结果为阴性)。The negative control template is Ribozyme-free water and pUC57-HBV plasmid; the positive control template is pUC57-HIV LTR plasmid. When the in vitro isothermal nucleic acid amplification-CRISPR detection system reacts with a negative control template, the template is Ribozyme-free water and pUC57-HBV plasmid of known concentration; when the in vitro isothermal nucleic acid amplification-CRISPR detection system reacts with a positive control template When the control template is reacted, the template is the pUC57-HIV LTR plasmid; when the in vitro isothermal nucleic acid amplification-CRISPR detection system is reacted with the sample template to be tested, the template is extracted from the blood of a suspected HIV-infected person. of viral genomic DNA. The negative control template, positive control template and sample template to be tested are subjected to in vitro isothermal nucleic acid amplification-CRISPR detection using the primers and probes provided by the present invention, and after the reaction is terminated, the excitation wavelength is 535 nm and the emission wavelength is 575 nm on a VICTOR Nivo microplate reader. , collect the fluorescence value, subtract the fluorescence value of the blank hole from the template fluorescence value of the sample to be tested to obtain the final fluorescence value, when the final fluorescence value of the sample to be tested is less than or equal to 0, it is interpreted that no virus is detected (the test result is negative).

进一步,优选的,本发明所述的RAA等温核酸扩增试剂包括基础反应液、装有冻干粉的基础反应单元及乙酸镁溶液。Further, preferably, the RAA isothermal nucleic acid amplification reagent of the present invention includes a basic reaction solution, a basic reaction unit containing lyophilized powder and a magnesium acetate solution.

进一步,优选的,本发明所述试剂盒的RAA等温核酸扩增体系为:Further, preferably, the RAA isothermal nucleic acid amplification system of the kit of the present invention is:

基础缓冲液,25.0μL;Basal buffer, 25.0 μL;

上游引物HIV-RAA_F(10μmol/L),2.0μL;Upstream primer HIV-RAA_F (10μmol/L), 2.0μL;

下游引物HIV-RAA_R(10μmol/L),2.0μL;Downstream primer HIV-RAA_R (10μmol/L), 2.0μL;

模板DNA,1.0μL;Template DNA, 1.0 μL;

纯化水,17.5μL;Purified water, 17.5 μL;

乙酸镁溶液,2.5μL;Magnesium acetate solution, 2.5 μL;

总计50.0μL。A total of 50.0 μL.

进一步,优选的是,本发明所述试剂盒的核酸扩增程序:37℃反应40分钟;反应结束后,每个反应管中加入50μL酚/氯仿(1:1),用涡旋震荡仪充分振荡均匀,12000rpm离心1分钟。Further, preferably, the nucleic acid amplification procedure of the kit of the present invention: 37°C for 40 minutes; after the reaction, add 50 μL of phenol/chloroform (1:1) to each reaction tube, use a vortex shaker to fully Shake evenly and centrifuge at 12,000 rpm for 1 minute.

进一步,优选的是,本发明所述试剂盒的CRISPR DNA检测体系为:Further, preferably, the CRISPR DNA detection system of the kit of the present invention is:

10x NEB Buffer2.1,2.0μL;10x NEB Buffer2.1, 2.0μL;

EnGen Lba Cpf1核酸酶,2.0μL;EnGen Lba Cpf1 Nuclease, 2.0 μL;

LTR-crRNA探针(10μmol/L),1.0μL;LTR-crRNA probe (10μmol/L), 1.0μL;

RAA扩增产物,4.0μL;RAA amplification product, 4.0 μL;

ssDNA-FQ报告基因探针(100μmol/L),0.2μL;ssDNA-FQ reporter gene probe (100μmol/L), 0.2μL;

RNase抑制剂,0.25μL;RNase inhibitor, 0.25 μL;

DTT,0.1μL;DTT, 0.1 μL;

Ribozyme-free水,10.45μL;Ribozyme-free water, 10.45 μL;

总计20.0μL。A total of 20.0 μL.

进一步,优选的是,所述试剂盒的检测程序:37℃反应40分钟,98℃加热5分钟终止反应。Further, preferably, the detection procedure of the kit is as follows: reaction at 37° C. for 40 minutes, and heating at 98° C. for 5 minutes to terminate the reaction.

本发明提供用于对HIV DNA进行检测的ssDNA-FQ报告基因探针的5’端以报告荧光基团标记,3’端以淬灭荧光基团标记。其中FAM为6-羧基荧光素报告荧光基团,BHQ1为黑洞淬灭荧光基团。The present invention provides a ssDNA-FQ reporter gene probe used for detecting HIV DNA whose 5' end is labeled with a reporter fluorescent group, and the 3' end is labeled with a quenching fluorescent group. Among them, FAM is a 6-carboxyfluorescein reporter fluorophore, and BHQ1 is a black hole quenching fluorophore.

本发明的具体原理是,CRISPR-Cas12a(Cpf1)系统在剪切靶向的双链DNA时,Cpf1的DNA酶活性会被激活,该酶能非特异性反式切割单链ssDNA;因此,同时向细胞内递送靶向该DNA的CRISPR-Cpf1系统和非特异性的ssDNA荧光报告基团,一旦检测到目的DNA,CRISPR-Cpf1系统将启动,荧光报告基团会被降解,释放出荧光信号。通过等温扩增方法(如重组酶聚合酶扩增RAA)来扩增DNA或RNA样品;然后,在特定的guideRNA帮助下,CRISPR相关蛋白Cpf1结合扩增的靶序列,通过报告分子的旁路核酸切割活性来检测所产生的结果。The specific principle of the present invention is that when the CRISPR-Cas12a (Cpf1) system cuts the targeted double-stranded DNA, the DNase activity of Cpf1 will be activated, and the enzyme can non-specifically cut single-stranded ssDNA in trans; The CRISPR-Cpf1 system targeting the DNA and a non-specific ssDNA fluorescent reporter group are delivered intracellularly. Once the target DNA is detected, the CRISPR-Cpf1 system will be activated, and the fluorescent reporter group will be degraded, releasing a fluorescent signal. DNA or RNA samples are amplified by isothermal amplification methods such as recombinase polymerase amplification of RAA; then, with the help of specific guideRNAs, the CRISPR-associated protein Cpf1 binds to the amplified target sequence, passing through the reporter's bypass nucleic acid cleavage activity to detect the resulting results.

针对HIV LTR DNA序列,设计用于等温核酸扩增的特异性引物和用于CRISPR检测的LTR-crRNA探针与ssDNA-FQ报告基因探针,使用FAM基团作为ssDNA-FQ报告基因的报告荧光基团,BHQ1作为ssDNA-FQ报告基因的淬灭荧光基团;在昆明擎科生物合成pUC57-HBV质粒和pUC57-HIV LTR质粒;在上海生工合成探针;在江苏奇天基因公司购买RAA等温核酸扩增试剂盒;最终构建出适用于检测HIV DNA的等温核酸扩增-CRISPR联用的检测引物、探针和检测试剂盒。Design specific primers for isothermal nucleic acid amplification and LTR-crRNA probe and ssDNA-FQ reporter gene probe for CRISPR detection against HIV LTR DNA sequence, using FAM group as the reporter fluorescence of ssDNA-FQ reporter gene group, BHQ1 as the quenching fluorophore of the ssDNA-FQ reporter gene; pUC57-HBV plasmid and pUC57-HIV LTR plasmid were synthesized in Kunming Qingke Biotechnology; probe was synthesized in Shanghai Shenggong; RAA was purchased in Jiangsu Qitian Gene Co., Ltd. Isothermal nucleic acid amplification kit; finally constructed detection primers, probes and detection kits suitable for the combination of isothermal nucleic acid amplification and CRISPR detection of HIV DNA.

本发明与现有技术相比,其有益效果为:Compared with the prior art, the present invention has the following beneficial effects:

(1)本发明设计了特异性强的体外等温核酸扩增引物和CRISPR检测探针,并在此基础上构建一种能够检出HIV DNA的检测试剂盒,该试剂盒具有特异、敏感、快速和高效等优势。(1) The present invention designs a highly specific in vitro isothermal nucleic acid amplification primer and a CRISPR detection probe, and on this basis constructs a detection kit capable of detecting HIV DNA, the kit has specificity, sensitivity, rapidity and high efficiency.

(2)本发明的CRISPR检测技术在37℃反应40分钟,就能检测到最高荧光值(附图1),比利用传统的RT-qPCR方法检测时间更快。(2) The CRISPR detection technology of the present invention can detect the highest fluorescence value at 37° C. for 40 minutes (Fig. 1), which is faster than the detection time using the traditional RT-qPCR method.

(3)人体感染HIV早期,其血液内病毒含量较低,而本发明开发的体外核酸等温扩增-CRISPR技术检测试剂盒具有良好的检测灵敏度,适用于早期临床样本的检测。灵敏度试验结果显示,本发明开发的体外核酸等温扩增-CRISPR技术检测试剂盒的检出下限为10拷贝的HIV病毒DNA(附图2),而RT-qPCR的检出下限一般为50拷贝,表明本发明的检测灵敏度比普通RT-qPCR高5倍。(3) In the early stage of human infection with HIV, the virus content in the blood is low, and the in vitro nucleic acid isothermal amplification-CRISPR technology detection kit developed by the present invention has good detection sensitivity and is suitable for the detection of early clinical samples. The sensitivity test results show that the detection limit of the in vitro nucleic acid isothermal amplification-CRISPR technology detection kit developed by the present invention is 10 copies of HIV virus DNA (Fig. 2), while the detection limit of RT-qPCR is generally 50 copies. It shows that the detection sensitivity of the present invention is 5 times higher than that of ordinary RT-qPCR.

(4)本发明开发的体外核酸等温扩增-CRISPR技术检测试剂盒特异性强。如附图3所示,本发明涉及的引物和探针只能在HIV DNA样本中产生荧光值,而未与HBV DNA发生交叉反应。(4) The in vitro nucleic acid isothermal amplification-CRISPR technology detection kit developed by the present invention has strong specificity. As shown in FIG. 3 , the primers and probes involved in the present invention can only generate fluorescence values in HIV DNA samples without cross-reacting with HBV DNA.

(5)本发明开发的体外核酸等温扩增-CRISPR技术检测试剂盒反应速度快,整个检测过程不到2小时即可完成,而且无需琼脂糖凝胶电泳即可直接通过检测荧光值判断待检样品是否有HIV DNA的存在,比传统的电泳检测方法用时短,大大提高了工作效率。(5) The in vitro nucleic acid isothermal amplification-CRISPR technology detection kit developed by the present invention has a fast reaction speed, and the whole detection process can be completed in less than 2 hours, and can directly determine the pending detection by detecting the fluorescence value without agarose gel electrophoresis Whether the sample has HIV DNA, it takes less time than the traditional electrophoresis detection method, which greatly improves the work efficiency.

(6)由于HIV LTR序列具有高度保守性,通常被用作HIV病毒特异性检测的靶基因,本发明针对HIV LTR序列进行引物设计,之后应用实例中利用本发明开发的体外核酸等温扩增-CRISPR技术检测试剂盒对大理市第二人民医院采集的HIV/AIDS患者血液样本进行检测,其检测结果表明本发明开发的检测试剂盒可有效地检测HIV/AIDS患者血液样本中的HIV DNA,检测符合率为100%。(6) Since the HIV LTR sequence is highly conserved, it is usually used as a target gene for HIV virus-specific detection. The present invention conducts primer design for the HIV LTR sequence, and then utilizes the in vitro nucleic acid isothermal amplification developed by the present invention in the application example- The CRISPR technology detection kit detects the blood samples of HIV/AIDS patients collected by the Second People's Hospital of Dali City, and the detection results show that the detection kit developed by the present invention can effectively detect HIV DNA in the blood samples of HIV/AIDS patients. The compliance rate is 100%.

附图说明Description of drawings

图1本发明的时间反应曲线;X轴为检测HIV DNA的反应时间,Y轴为荧光值。Fig. 1 is the time-response curve of the present invention; the X-axis is the reaction time for detecting HIV DNA, and the Y-axis is the fluorescence value.

图2本发明开发的体外核酸等温扩增-CRISPR技术试剂盒灵敏度试验;其中,1ng模板HIV DNA等于108aM。Figure 2 Sensitivity test of the in vitro nucleic acid isothermal amplification-CRISPR technology kit developed by the present invention; wherein, 1 ng of template HIV DNA is equal to 10 8 aM.

图3本发明开发的体外核酸等温扩增-CRISPR技术试剂盒特异性试验。Fig. 3 The specificity test of the in vitro nucleic acid isothermal amplification-CRISPR technology kit developed by the present invention.

具体实施方式Detailed ways

本领域技术人员将会理解,下列实施例仅用于说明本发明,而不应视为限定本发明的范围。实施例中未注明具体技术或条件者,按照本领域内的文献所描述的技术或条件或者按照产品说明书进行。所用材料或设备未注明生产厂商者,均为可以通过购买获得的常规产品。Those skilled in the art will understand that the following examples are only for illustrating the present invention and should not be construed as limiting the scope of the present invention. If no specific technology or condition is indicated in the examples, the technology or condition described in the literature in the field or the product specification is used. If the materials or equipment used are not marked with the manufacturer, they are all conventional products that can be obtained through purchase.

(1)实验材料(1) Experimental materials

HIV/AIDS患者血液样本来自在大理市第二人民医院开展的科研项目《全营养配方食品营养补充对艾滋病患者营养治疗效果的研究临床试验》,未感染HIV的戒毒人员血液样品采集自云南省第六强制戒毒所陇川分所。血液样本分装成200μL/管,保存在-80℃冰箱。The blood samples of HIV/AIDS patients were collected from the scientific research project "Clinical Trial of Nutritional Treatment of AIDS Patients with Nutritional Supplementation of Whole-Nutrition Formula Foods" carried out in the Second People's Hospital of Dali City. Six compulsory drug rehabilitation centers Longchuan branch. Blood samples were divided into 200 μL/tube and stored in -80°C refrigerator.

(2)试剂与仪器(2) Reagents and instruments

10x NEB Buffer2.1和EnGen Lba Cas12a(Cpf1)核酸酶购自NEB公司;质粒小提试剂盒、大肠杆菌DH5α感受态细胞、血液基因组DNA提取试剂盒购自天根生化科技有限公司;酚/氯仿(1:1)购自索莱宝公司;RAA核酸检测试剂盒(货号:B00000)购自江苏奇天基因公司。pUC57-HIV LTR质粒和pUC57-HBV质粒由昆明擎科生物公司合成,保存在-20℃冰箱。10x NEB Buffer2.1 and EnGen Lba Cas12a(Cpf1) nuclease were purchased from NEB Company; Plasmid Mini Kit, Escherichia coli DH5α Competent Cell, Blood Genomic DNA Extraction Kit were purchased from Tiangen Biochemical Technology Co., Ltd.; Phenol/chloroform (1:1) was purchased from Solebao Company; RAA nucleic acid detection kit (Item No.: B00000) was purchased from Jiangsu Qitian Gene Company. The pUC57-HIV LTR plasmid and pUC57-HBV plasmid were synthesized by Kunming Qingke Biotechnology Co., Ltd. and stored in -20°C refrigerator.

384孔板;VICTOR Nivo酶标仪;干式恒温金属浴OSE-96(天根生化科技有限公司);台式离心机1-14(Sigma)。384-well plate; VICTOR Nivo microplate reader; dry thermostatic metal bath OSE-96 (Tiangen Biochemical Technology Co., Ltd.); desktop centrifuge 1-14 (Sigma).

(3)设计引物和探针(3) Design primers and probes

针对HIV LTR序列,设计用于体外等温核酸扩增的特异性引物和LTR-crRNA探针,同时设计ssDNA-FQ报告基因探针,报告基因探针分别使用FAM和BHQ1作为报告荧光基团和淬灭荧光基团。引物和探针序列如表1所示。Specific primers and LTR-crRNA probes for in vitro isothermal nucleic acid amplification were designed for HIV LTR sequences, and ssDNA-FQ reporter gene probes were also designed. The reporter gene probes used FAM and BHQ1 as the reporter fluorophore and quencher, respectively. Fluorophore. Primer and probe sequences are shown in Table 1.

表1 PALV qRT-PCR检测所用引物和探针序列信息Table 1 Sequence information of primers and probes used in PALV qRT-PCR detection

Figure BDA0002502596810000071
Figure BDA0002502596810000071

(4)模板质粒的合成(4) Synthesis of template plasmid

根据HIV HxB2株的LTR序列(806bp)和合成的HBV序列(989bp),在昆明擎科生物公司分别合成pUC57-HIV LTR质粒和pUC57-HBV质粒。According to the LTR sequence (806bp) and the synthesized HBV sequence (989bp) of HIV HxB2 strain, pUC57-HIV LTR plasmid and pUC57-HBV plasmid were synthesized in Kunming Qingke Biotechnology Company, respectively.

把合成的质粒转化大肠杆菌DH5α感受态细胞(天根生化科技有限公司),筛选阳性克隆菌进行质粒提取。按照“质粒小提试剂盒”(天根生化科技有限公司)说明书提取模板质粒。The synthesized plasmids were transformed into Escherichia coli DH5α competent cells (Tiangen Biochemical Technology Co., Ltd.), and positive clones were screened for plasmid extraction. The template plasmid was extracted according to the instructions of "plasmid extraction kit" (Tiangen Biochemical Technology Co., Ltd.).

(5)优化CRISPR检测体系(5) Optimize the CRISPR detection system

(6)通过反复试验,优化CRISPR检测的反应体系,确定采用的反应总体系为20μL,所需各组分及相应浓度、相应用量见表2。以10ng终浓度的pUC57-HIV LTR质粒作为模板,分别对LTR crRNA探针浓度(0.25、0.5、0.75和1.0μmol/L)和ssDNA-FQ报告基因探针浓度(0.2、0.4、0.6、0.8和1.0μmol/L)进行优化,以20μL反应体系进行HIV DNA检测,最佳结果对应LTR crRNA探针和ssDNA-FQ报告基因探针终浓度分别为0.5μmol/L和1μmol/L。如调整反应体系,应保证体系内LTR crRNA探针和ssDNA-FQ报告基因探针的终浓度为0.5μmol/L和1μmol/L,即能得到较好的检测结果。(6) Through repeated experiments, the reaction system of CRISPR detection was optimized, and the total reaction system used was determined to be 20 μL. The required components, corresponding concentrations, and corresponding amounts are shown in Table 2. Using 10ng final concentration of pUC57-HIV LTR plasmid as template, the LTR crRNA probe concentrations (0.25, 0.5, 0.75 and 1.0 μmol/L) and ssDNA-FQ reporter gene probe concentrations (0.2, 0.4, 0.6, 0.8 and 1.0 μmol/L) for HIV DNA detection in a 20 μL reaction system, the best results correspond to the final concentrations of LTR crRNA probe and ssDNA-FQ reporter gene probe of 0.5 μmol/L and 1 μmol/L, respectively. If the reaction system is adjusted, it should be ensured that the final concentrations of the LTR crRNA probe and the ssDNA-FQ reporter gene probe in the system are 0.5 μmol/L and 1 μmol/L, that is, better detection results can be obtained.

表2 CRISPR检测HIV DNA反应体系Table 2 CRISPR detection HIV DNA reaction system

反应体系组分Reaction system components 用量(μL)Dosage (μL) 终浓度Final concentration 10×NEB Buffer2.110×NEB Buffer2.1 2.02.0 EnGenLba Cas12a(2μmol/L)EnGenLba Cas12a (2μmol/L) 2.02.0 DTT(2mol/L)DTT(2mol/L) 0.10.1 RNase inhibitors(40U/μL)RNase inhibitors (40U/μL) 0.250.25 LTR-crRNA Probe(10μmol/L)LTR-crRNA Probe (10μmol/L) 1.01.0 0.5μmol/L0.5μmol/L ssDNA-FQ报告基因探针(100μmol/L)ssDNA-FQ reporter gene probe (100μmol/L) 0.20.2 1μmol/L1μmol/L 模板(100ng/μL)Template (100ng/μL) 0.10.1 Ribozyme-free水Ribozyme-free water 14.3514.35 总计total 20.020.0

(6)优化体外核酸等温扩增反应条件(6) Optimizing reaction conditions for isothermal nucleic acid amplification in vitro

按照RAA体外核酸等温扩增试剂盒的操作说明书进行体外核酸等温扩增;为了获得最多量的目的扩增产物,RAA等温核酸扩增最佳反应条件确定为:37℃反应40分钟。Perform in vitro nucleic acid isothermal amplification according to the operating instructions of the RAA in vitro nucleic acid isothermal amplification kit; in order to obtain the maximum amount of target amplification products, the optimal reaction conditions for RAA isothermal nucleic acid amplification are determined as: 37 °C for 40 minutes.

(7)优化体外核酸等温扩增-CRISPR技术检测试剂盒反应体系中所用RAA扩增产物体积:通过反复试验,优化体外核酸等温扩增-CRISPR技术检测试剂盒检测的反应体系,确定采用的反应总体系为20μL,所需各组分和相应用量见表3。(7) Optimize the volume of RAA amplification products used in the in vitro nucleic acid isothermal amplification-CRISPR technology detection kit reaction system: through repeated experiments, optimize the in vitro nucleic acid isothermal amplification-CRISPR technology detection kit detection reaction system, and determine the reaction used The total system is 20 μL, and the required components and corresponding amounts are shown in Table 3.

以RAA扩增产物作为模板,对其使用体积(1.0、2.0、3.0、4.0和5.0μL)进行优化,以20μL反应体系进行HIV DNA检测,在4.0μL的RAA扩增产物时能获得最优的检测结果。Using the RAA amplification product as a template, the use volume (1.0, 2.0, 3.0, 4.0, and 5.0 μL) was optimized. HIV DNA detection was performed in a 20 μL reaction system, and the optimal amount of RAA amplification product was 4.0 μL. Test results.

表2体外核酸等温扩增-CRISPR技术检测试剂盒反应体系Table 2 In vitro nucleic acid isothermal amplification-CRISPR technology detection kit reaction system

Figure BDA0002502596810000081
Figure BDA0002502596810000081

Figure BDA0002502596810000091
Figure BDA0002502596810000091

(8)本发明的时间反应曲线以10ng HIV DNA为模板,分别检测反应时间为10、20、30、40、50及60分钟时的荧光值,建立本发明的时间反应曲线。以检测HIV DNA的反应时间为X轴,以最终荧光值为Y轴,得到时间反应曲线如图1所示,由图可以看出CRISPR-Cpf1、LTRcrRNA-1及10ng HIV DNA联用,37℃反应40分钟,能检测最高荧光值。(8) The time-response curve of the present invention takes 10 ng HIV DNA as a template, respectively detects the fluorescence values when the reaction time is 10, 20, 30, 40, 50 and 60 minutes, and establishes the time-response curve of the present invention. Taking the reaction time for HIV DNA detection as the X-axis and the final fluorescence value as the Y-axis, the time-response curve is shown in Figure 1. It can be seen from the figure that CRISPR-Cpf1, LTRcrRNA-1 and 10ng HIV DNA are used in combination at 37°C After 40 minutes of reaction, the highest fluorescence value can be detected.

(9)灵敏性分析(9) Sensitivity analysis

利用本发明所涉及的HIV DNA检测引物、探针和检测试剂盒,按优化的反应体系和反应条件,以拷贝数分别为106aM、105aM、104aM、103aM、102aM、101aM及100aM的模板HIV LTR经体外核酸等温扩增后,取4μL扩增产物进行灵敏性分析,本发明涉及的检测引物、探针和试剂盒的检出下限为10拷贝(见图2)。由图可以看出RAA等温核酸扩增技术与CRISPR-Cpf联用,能检测到10拷贝的HIV病毒DNA(对于模板DNA,1ng等于108aM)。Using the HIV DNA detection primers, probes and detection kits involved in the present invention, according to the optimized reaction system and reaction conditions, the copy numbers are respectively 10 6 aM, 10 5 aM, 10 4 aM, 10 3 aM, 10 2 After isothermal amplification of aM, 10 1 aM and 10 0 aM of template HIV LTR by nucleic acid in vitro, 4 μL of the amplified product was taken for sensitivity analysis. The detection limit of the detection primers, probes and kits involved in the present invention is 10 copies. (see Figure 2). It can be seen from the figure that RAA isothermal nucleic acid amplification technology combined with CRISPR-Cpf can detect 10 copies of HIV virus DNA (for template DNA, 1 ng is equal to 10 8 aM).

(10)特异性分析(10) Specificity analysis

利用本发明所涉及的HIV DNA检测引物、探针和检测试剂盒,按优化的反应体系和反应条件,取4μL经体外核酸等温扩增的产物进行特异性分析,本发明涉及的HIV DNA检测引物、探针和检测试剂盒的能够特异性检出HIV DNA,而与HBV DNA没有交叉反应,如图3所示,由图可以看出RAA等温核酸扩增技术与CRISPR-Cpf联用是特异性良好的检测方法。Using the HIV DNA detection primers, probes and detection kits involved in the present invention, according to the optimized reaction system and reaction conditions, take 4 μL of the isothermally amplified product of nucleic acid in vitro for specificity analysis. The HIV DNA detection primers involved in the present invention , probes and detection kits can specifically detect HIV DNA without cross-reacting with HBV DNA, as shown in Figure 3. It can be seen from the figure that the combination of RAA isothermal nucleic acid amplification technology and CRISPR-Cpf is specific good detection method.

应用实例Applications

利用本发明开发的检测试剂盒对HIV/AIDS患者进行检测Detecting HIV/AIDS patients by using the detection kit developed by the present invention

利用本发明所涉及的HIV DNA检测引物、探针和检测试剂盒,按优化的反应体系和反应条件,对采集的30份HIV/AIDS患者血液样本和30份未感染HIV的戒毒人员血液样品进行检测。各取100μL血液提取基因组DNA,实施操作过程中,阴性对照模板、阳性对照模板以及待检样品模板在不同的反应孔中同时进行体外核酸等温扩增和CRISPR检测过程。本发明涉及的引物、探针和检测试剂盒能够有效地检出所有阳性样本,同时未感染HIV的戒毒人员的检测结果都是阴性,符合率为100%。本发明开发的HIV DNA检测试剂盒对病原核酸进行检测,因此,在宿主被感染但还未产生抗体时,本发明开发的HIV DNA体外核酸等温扩增引物、CRISPR相关探针和检测试剂盒具有良好的敏感性和可靠性。Using the HIV DNA detection primers, probes and detection kits involved in the present invention, according to the optimized reaction system and reaction conditions, 30 blood samples of HIV/AIDS patients and 30 blood samples of drug addicts who were not infected with HIV were collected. detection. 100 μL of blood was taken to extract genomic DNA. During the operation, the negative control template, positive control template and sample template to be tested were simultaneously subjected to in vitro nucleic acid isothermal amplification and CRISPR detection in different reaction wells. The primers, probes and detection kits of the invention can effectively detect all positive samples, and the detection results of drug addicts who are not infected with HIV are all negative, and the coincidence rate is 100%. The HIV DNA detection kit developed by the present invention detects pathogenic nucleic acids. Therefore, when the host is infected but has not yet produced antibodies, the HIV DNA in vitro nucleic acid isothermal amplification primers, CRISPR-related probes and detection kits developed by the present invention have Good sensitivity and reliability.

由本发明引物对衍生的引物序列也属于本发明的保护范围;所述衍生序列是指在SEQ ID NO.1至SEQ ID NO.4的基础上经过一至十个碱基的取代、缺失或添加得到的引物序列。The primer sequence derived from the primer pair of the present invention also belongs to the protection scope of the present invention; the derived sequence refers to the one to ten base substitutions, deletions or additions obtained on the basis of SEQ ID NO.1 to SEQ ID NO.4. primer sequences.

以上显示和描述了本发明的基本原理、主要特征和本发明的优点。本行业的技术人员应该了解,本发明不受上述实施例的限制,上述实施例和说明书中描述的只是说明本发明的原理,在不脱离本发明精神和范围的前提下,本发明还会有各种变化和改进,这些变化和改进都落入要求保护的本发明范围内。本发明要求保护范围由所附的权利要求书及其等效物界定。The foregoing has shown and described the basic principles, main features and advantages of the present invention. Those skilled in the art should understand that the present invention is not limited by the above-mentioned embodiments. The above-mentioned embodiments and descriptions only illustrate the principle of the present invention. Without departing from the spirit and scope of the present invention, the present invention will also have Various changes and modifications fall within the scope of the claimed invention. The claimed scope of the present invention is defined by the appended claims and their equivalents.

序列表sequence listing

<110> 昆明医科大学第一附属医院<110> The First Affiliated Hospital of Kunming Medical University

<120> 一种人类免疫缺陷病毒HIV-1的检测试剂盒<120> A detection kit for human immunodeficiency virus HIV-1

<130> 20200521<130> 20200521

<160> 2<160> 2

<170> SIPOSequenceListing 1.0<170> SIPOSequenceListing 1.0

<210> 1<210> 1

<211> 806<211> 806

<212> DNA<212> DNA

<213> HIV HxB2株的LTR(HIV)<213> LTR of HIV HxB2 strain (HIV)

<400> 1<400> 1

tggaagggct aattcactcc caaagaagac aagatatcct tgatctgtgg atctaccaca 60tggaagggct aattcactcc caaagaagac aagatatcct tgatctgtgg atctaccaca 60

cacaaggcta cttccctgat tagcagaact acacaccagg gccaggggtc agatatccac 120cacaaggcta cttccctgat tagcagaact acacaccagg gccaggggtc agatatccac 120

tgacctttgg atggtgctac aagctagtac cagttgagcc agataagata gaagaggcca 180tgacctttgg atggtgctac aagctagtac cagttgagcc agataagata gaagaggcca 180

ataaaggaga gaacaccagc ttgttacacc ctgtgagcct gcatgggatg gatgacccgg 240ataaaggaga gaacaccagc ttgttacacc ctgtgagcct gcatgggatg gatgacccgg 240

agagagaagt gttagagtgg aggtttgaca gccgcctagc atttcatcac gtggcccgag 300agagagaagt gttagagtgg aggtttgaca gccgcctagc atttcatcac gtggcccgag 300

agctgcatcc ggagtacttc aagaactgct gacatcgagc ttgctacaag ggactttccg 360agctgcatcc ggagtacttc aagaactgct gacatcgagc ttgctacaag ggactttccg 360

ctggggactt tccagggagg cgtggcctgg gcgggactgg ggagtggcga gccctcagat 420ctggggactt tccagggagg cgtggcctgg gcgggactgg ggagtggcga gccctcagat 420

cctgcatata agcagctgct ttttgcctgt actgggtctc tctggttaga ccagatctga 480cctgcatata agcagctgct ttttgcctgt actgggtctc tctggttaga ccagatctga 480

gcctgggagc tctctggcta actagggaac ccactgctta agcctcaata aagcttgcct 540gcctgggagc tctctggcta actagggaac ccactgctta agcctcaata aagcttgcct 540

tgagtgcttc aagtagtgtg tgcccgtctg ttgtgtgact ctggtaacta gagatccctc 600tgagtgcttc aagtagtgtg tgcccgtctg ttgtgtgact ctggtaacta gagatccctc 600

agaccctttt agtcagtgtg gaaaatctct agcagtggcg cccgaacagg gacctgaaag 660agaccctttt agtcagtgtg gaaaatctct agcagtggcg cccgaacagg gacctgaaag 660

cgaaagggaa accagaggag ctctctcgac gcaggactcg gcttgctgaa gcgcgcacgg 720cgaaagggaa accagaggag ctctctcgac gcaggactcg gcttgctgaa gcgcgcacgg 720

caagaggcga ggggcggcga ctggtgagta cgccaaaaat tttgactagc ggaggctaga 780caagaggcga ggggcggcga ctggtgagta cgccaaaaat tttgactagc ggaggctaga 780

aggagagaga tgggtgcgag agcgtc 806aggagagaga tgggtgcgag agcgtc 806

<210> 1<210> 1

<211> 989<211> 989

<212> DNA<212> DNA

<213> 合成的HBV(HIV)<213> Synthetic HBV (HIV)

<400> 1<400> 1

ggattgggga ccctgcgctg aacatggaga acatcacatc aggattccta ggacccctgc 60ggattgggga ccctgcgctg aacatggaga acatcacatc aggattccta ggacccctgc 60

tcgtgttaca ggcggggttt ttcttgttga caagaatcct cacaataccg cagagtctag 120tcgtgttaca ggcggggttt ttcttgttga caagaatcct cacaataccg cagagtctag 120

actcgtggtg gacttctctc aattttctag gggggaccac cgtgtgtctt ggccaaaatt 180actcgtggtg gacttctctc aattttctag gggggaccac cgtgtgtctt ggccaaaatt 180

cgcagtcccc aacctccaat cactcaccaa cctcctgtcc tccaacttgt cctggttatc 240cgcagtcccc aacctccaat cactcaccaa cctcctgtcc tccaacttgt cctggttatc 240

gctggatgtg tctgcggcgt tttatcatct tcctcttcat cctgctgcta tgcctcatct 300gctggatgtg tctgcggcgt tttatcatct tcctcttcat cctgctgcta tgcctcatct 300

tcttgttggt tcttctggac tatcaaggta tgttgcccgt ttgtcctcta attccaggat 360tcttgttggt tcttctggac tatcaaggta tgttgcccgt ttgtcctcta attccaggat 360

cttcgaccac cagcgtggga ccatgcagaa cctgcacgac tactgttcaa ggaacctcta 420cttcgaccac cagcgtggga ccatgcagaa cctgcacgac tactgttcaa ggaacctcta 420

tgtatccctc atgttgctgt accaaacctt cggacggaaa ttgcacctgt attcccatcc 480tgtatccctc atgttgctgt accaaacctt cggacggaaa ttgcacctgt attcccatcc 480

catcatcctg ggctttcgga aaattcctat gggagtgggc ctcagcccgt ttctcctggc 540catcatcctg ggctttcgga aaattcctat gggagtgggc ctcagcccgt ttctcctggc 540

tcagtttact agtgccattt gttcagtggt tcgtagggct ttcccccact gtttggcttt 600tcagtttact agtgccattt gttcagtggt tcgtagggct ttcccccact gtttggcttt 600

cagttatatg gatgatgtgg tattgggggc caagtctgca cagcatcttg agtccctttt 660cagttatatg gatgatgtgg tattgggggc caagtctgca cagcatcttg agtccctttt 660

taccgctgtt accaattttc ttttatcttt gggtatacat ttaaacccta acaaaactaa 720taccgctgtt accaattttc ttttatcttt gggtatacat ttaaacccta acaaaactaa 720

aagatggggt tactctttaa atttcatggg ctatgtcatt ggatgttatg ggtcattgcc 780aagatggggt tactctttaa atttcatggg ctatgtcatt ggatgttatg ggtcattgcc 780

acaagatcac atcagacaga aaatcaaaga atgttttaga aaacttcctg ttaacaggcc 840acaagatcac atcagacaga aaatcaaaga atgttttaga aaacttcctg ttaacaggcc 840

tattgattgg aaagtctgtc aacgtattgt gggtcttttg ggttttgctg ccccttttac 900tattgattgg aaagtctgtc aacgtattgt gggtcttttg ggttttgctg ccccttttac 900

acaatgtggt tatcctgctt taatgccctt gtatgcctgt attcaatcta agcaggcttt 960acaatgtggt tatcctgctt taatgccctt gtatgcctgt attcaatcta agcaggcttt 960

cactttctcg ccaacctaca aggcctttc 989cactttctcg ccaacctaca aggcctttc 989

Claims (8)

1.一种人类免疫缺陷病毒HIV-1的检测试剂盒,其特征在于:包括DNA的等温扩增-CRISPR技术检测引物和探针;1. a detection kit of human immunodeficiency virus HIV-1, is characterized in that: comprise the isothermal amplification-CRISPR technology detection primer and probe of DNA; 所述HIV体外等温核酸扩增-CRISPR的特异性引物,包括上游引物HIV-RAA_F和下游引物HIV-RAA_R;The specific primers of the HIV in vitro isothermal nucleic acid amplification-CRISPR, including the upstream primer HIV-RAA_F and the downstream primer HIV-RAA_R; 上游引物HIV-RAA_F:TACTTCAAGAACTGCTGACATCGAGCTTGC TAC;Upstream primer HIV-RAA_F: TACTTCAAGAACTGCTGACATCGAGCTTGC TAC; 下游引物HIV-RAA_R:CGCCACTGCTAGAGATTTTCCACACTGACT;Downstream primer HIV-RAA_R: CGCCACTGCTAGAGATTTTCCACACTGACT; 所述探针核苷酸序列为:TTTCCACACTGACTAAAAGGGTCT。The probe nucleotide sequence is: TTTCCACACTGACTAAAAGGGTCT. 2.根据权利要求1所述人类免疫缺陷病毒HIV-1的检测试剂盒,其特征在于:2. the detection kit of human immunodeficiency virus HIV-1 according to claim 1, is characterized in that: 所述引物配合使用的ssDNA-FQ报告基因探针的核苷酸序列为:FAM-T TATT-BHQ1。The nucleotide sequence of the ssDNA-FQ reporter gene probe used in combination with the primers is: FAM-T TATT-BHQ1. 3.根据权利要求1或2所述人类免疫缺陷病毒HIV-1的检测试剂盒,其特征在于:还包括阴性对照模板、阳性对照模板、RAA等温核酸扩增试剂、10x NEB Buffer2.1、40U/μL的RNase抑制剂、2mol/L的DTT及2μm ol/L的EnGen Lba Cpf1核酸酶;3. the detection kit of human immunodeficiency virus HIV-1 according to claim 1 or 2, is characterized in that: also comprises negative control template, positive control template, RAA isothermal nucleic acid amplification reagent, 10x NEB Buffer2.1, 40U /μL of RNase inhibitor, 2mol/L of DTT and 2μmol/L of EnGen Lba Cpf1 nuclease; 所述的阴性对照模板为Ribozyme-free水和pUC57-HBV质粒;Described negative control template is Ribozyme-free water and pUC57-HBV plasmid; 所述的阳性对照模板为pUC57-HIV LTR质粒。The positive control template is pUC57-HIV LTR plasmid. 4.根据权利要求3所述人类免疫缺陷病毒HIV-1的检测试剂盒,其特征在于:所述的RAA等温核酸扩增试剂包括基础反应液、装有冻干粉的基础反应单元及乙酸镁溶液。4. the detection kit of human immunodeficiency virus HIV-1 according to claim 3, is characterized in that: described RAA isothermal nucleic acid amplification reagent comprises basic reaction solution, the basic reaction unit that freeze-dried powder is housed and magnesium acetate solution. 5.根据权利要求4所述人类免疫缺陷病毒HIV-1的检测试剂盒,其特征在于:所述试剂盒的RAA等温核酸扩增体系为:5. the detection kit of human immunodeficiency virus HIV-1 according to claim 4, is characterized in that: the RAA isothermal nucleic acid amplification system of described test kit is: 基础缓冲液,25.0μL;Basal buffer, 25.0 μL; 上游引物HIV-RAA_F 10μmol/L,2.0μL;Upstream primer HIV-RAA_F 10μmol/L, 2.0μL; 下游引物HIV-RAA_R 10μmol/L,2.0μL;Downstream primer HIV-RAA_R 10μmol/L, 2.0μL; 模板DNA,1.0μL;Template DNA, 1.0 μL; 纯化水,17.5μL;Purified water, 17.5 μL; 乙酸镁溶液,2.5μL;Magnesium acetate solution, 2.5 μL; 总计50.0μL。A total of 50.0 μL. 6.根据权利要求3所述人类免疫缺陷病毒HIV-1的检测试剂盒,其特征在于:所述试剂盒的核酸扩增程序:37℃反应40分钟;反应结束后,每个反应管中加入50μL酚/氯仿(1:1),用涡旋震荡仪充分振荡均匀,12000rpm离心1分钟。6 . The detection kit for human immunodeficiency virus HIV-1 according to claim 3 , wherein the nucleic acid amplification procedure of the kit is: 37° C. for 40 minutes; after the reaction is completed, each reaction tube is added with 50 μL of phenol/chloroform (1:1), fully shaken with a vortex shaker, and centrifuged at 12,000 rpm for 1 minute. 7.根据权利要求3所述人类免疫缺陷病毒HIV-1的检测试剂盒,其特征在于:所述试剂盒的CRISPR DNA检测体系为:7. the detection kit of human immunodeficiency virus HIV-1 according to claim 3, is characterized in that: the CRISPR DNA detection system of described test kit is: 10x NEB Buffer2.1,2.0μL;10x NEB Buffer2.1, 2.0μL; EnGen Lba Cpf1核酸酶,2.0μL;EnGen Lba Cpf1 Nuclease, 2.0 μL; LTR-crRNA探针10μmol/L,1.0μL;LTR-crRNA probe 10μmol/L, 1.0μL; RAA扩增产物,4.0μL;RAA amplification product, 4.0 μL; ssDNA-FQ报告基因探针100μmol/L,0.2μL;ssDNA-FQ reporter gene probe 100μmol/L, 0.2μL; RNase抑制剂,0.25μL;RNase inhibitor, 0.25 μL; DTT,0.1μL;DTT, 0.1 μL; Ribozyme-free水,10.45μL;Ribozyme-free water, 10.45 μL; 总计20.0μL。A total of 20.0 μL. 8.根据权利要求1所述人类免疫缺陷病毒HIV-1的检测试剂盒,其特征在于:37℃反应40分钟,98℃加热5分钟终止反应。8 . The detection kit for human immunodeficiency virus HIV-1 according to claim 1 , wherein the reaction is terminated at 37° C. for 40 minutes and heated at 98° C. for 5 minutes. 9 .
CN202010436839.5A 2020-05-21 2020-05-21 A detection kit for human immunodeficiency virus HIV-1 Pending CN111719015A (en)

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