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CN116337697A - A method and system for detecting the empty packet ratio of an adeno-associated virus vector - Google Patents

A method and system for detecting the empty packet ratio of an adeno-associated virus vector Download PDF

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CN116337697A
CN116337697A CN202310266352.0A CN202310266352A CN116337697A CN 116337697 A CN116337697 A CN 116337697A CN 202310266352 A CN202310266352 A CN 202310266352A CN 116337697 A CN116337697 A CN 116337697A
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sedimentation
adeno
coefficient value
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王欣宇
任美婷
陈天明
魏信念
陈智
陈琪
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Wuxi ATU Co Ltd
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Abstract

The invention provides a method and a system for detecting the blank ratio of an adeno-associated virus vector, which are characterized in that the sedimentation coefficient value of the adeno-associated virus vector and the sedimentation distribution coefficient value corresponding to the sedimentation coefficient value are measured through an analytical ultracentrifuge, the sedimentation coefficient value and the sedimentation distribution coefficient value are normalized, and the blank ratio is obtained through the ratio of each sedimentation distribution coefficient value to the sum of the sedimentation distribution coefficient values. According to the method and the system for detecting the blank ratio of the adeno-associated virus vector, disclosed by the embodiment of the invention, the sedimentation coefficient value and the sedimentation distribution coefficient value of the adeno-associated virus vector are measured through the analytical ultracentrifuge, the sedimentation coefficient value and the sedimentation distribution coefficient value are normalized, the blank ratio is obtained through the ratio of each sedimentation distribution coefficient value to the sum of the sedimentation distribution coefficient values, and the detection effect on the blank ratio of the adeno-associated virus vector is greatly improved.

Description

一种腺相关病毒载体的空包比检测方法和系统A method and system for detecting the empty packet ratio of an adeno-associated virus vector

技术领域technical field

本发明涉及基因检测领域,特别涉及一种腺相关病毒载体的空包比检测方法;此外,本发明还涉及一种腺相关病毒载体的空包比检测系统。The invention relates to the field of gene detection, in particular to a method for detecting the empty packet ratio of an adeno-associated virus vector; in addition, the invention also relates to a system for detecting the empty packet ratio of the adeno-associated virus vector.

背景技术Background technique

在基因治疗领域,腺相关病毒载体被认为是目前最有前景的基因递送载体之一。在腺相关病毒载体生产过程中,产品质量同质性、载体纯度和批次一致性是质控的重要方面,除了确保腺相关病毒载体的滴度、产量和生物活性外,最重要的是提高腺相关病毒载体的纯度。这其中,最重要的任务是去除掉有缺陷的腺相关病毒载体,即去除空的衣壳病毒颗粒或者含有全长基因以外DNA的病毒载体颗粒。在理化层面和生物层面上缺乏确保腺相关病毒载体产品质量和有效性的标准方法,在现有技术中也缺乏更有效的检测手段对腺相关病毒载体的空包比进行检测。In the field of gene therapy, adeno-associated virus vectors are considered to be one of the most promising gene delivery vectors. In the production process of adeno-associated virus vectors, product quality homogeneity, vector purity and batch consistency are important aspects of quality control. In addition to ensuring the titer, yield and biological activity of adeno-associated virus vectors, the most important thing is to improve Purity of the adeno-associated virus vector. Among them, the most important task is to remove defective adeno-associated virus vectors, that is, to remove empty capsid virus particles or virus vector particles containing DNA other than full-length genes. There is a lack of standard methods to ensure the quality and effectiveness of adeno-associated virus vector products at the physical, chemical and biological levels, and there is also a lack of more effective detection methods to detect the empty packet ratio of adeno-associated virus vectors in the prior art.

发明内容Contents of the invention

为了解决现有技术存在的问题,本发明的至少一个实施例提供了一种腺相关病毒载体的空包比检测方法,从很大程度上提升了对腺相关病毒载体的空包比的检测效果。为此,本发明的至少一个实施例还提供一种腺相关病毒载体的空包比检测系统。In order to solve the problems existing in the prior art, at least one embodiment of the present invention provides a method for detecting the empty packet ratio of the adeno-associated virus vector, which greatly improves the detection effect of the empty packet ratio of the adeno-associated virus vector . To this end, at least one embodiment of the present invention also provides a system for detecting the empty packet ratio of an adeno-associated virus vector.

第一方面,本发明实施例提出一种腺相关病毒载体的空包比检测方法,方法包括以下步骤:In the first aspect, the embodiment of the present invention proposes a method for detecting the empty packet ratio of an adeno-associated virus vector, the method comprising the following steps:

通过分析型超速离心机测定腺相关病毒载体的沉降系数值和与其对应的沉降分布系数值;The sedimentation coefficient value and the corresponding sedimentation distribution coefficient value of the adeno-associated virus vector are determined by an analytical ultracentrifuge;

对沉降系数值和沉降分布系数值进行归一化处理;Normalize the sedimentation coefficient value and the sedimentation distribution coefficient value;

通过每个沉降分布系数值与沉降分布系数值和的比值得到空包比。The empty bag ratio is obtained by the ratio of each settlement distribution coefficient value to the sum of the settlement distribution coefficient values.

在一些实施例中,本发明提供的一种腺相关病毒载体的空包比检测方法,通过分析型超速离心机测定的沉降曲线得到沉降系数、摩尔质量和扩散系数值包括以下步骤:In some embodiments, the present invention provides a method for detecting the empty packet ratio of an adeno-associated virus vector. Obtaining the sedimentation coefficient, molar mass and diffusion coefficient value through the sedimentation curve measured by the analytical ultracentrifuge includes the following steps:

使用SEDFIT软件的c(s)分析模型,该模型设腺相关病毒载体溶液中所有组分均有相同的摩擦系数比,计算如下公式:Use the c(s) analysis model of SEDFIT software, all components in the adeno-associated virus carrier solution have the same coefficient of friction ratio in this model, calculate the following formula:

f0=6πηr0f 0 =6πηr 0 ,

其中,f0为高分子塌缩成密实小球的摩擦系数,η为溶剂粘度,r0为流体力学半径;Wherein, f 0 is the friction coefficient that macromolecule collapses into compact bead, η is solvent viscosity, r 0 is hydrodynamic radius;

将如下公式进行变形:Transform the following formula:

Figure BDA0004133111770000021
Figure BDA0004133111770000021

其中,M为摩尔质量,NA为摩尔数,ρp为溶液颗粒密度;Wherein, M is the molar mass, N A is the number of moles, and ρ is the particle density of the solution;

得到:get:

Figure BDA0004133111770000022
Figure BDA0004133111770000022

其中ν为溶质的比容;where ν is the specific volume of the solute;

根据Svedberg方程得到:According to the Svedberg equation:

Figure BDA0004133111770000023
Figure BDA0004133111770000023

Figure BDA0004133111770000024
Figure BDA0004133111770000024

其中s为沉降系数值;Where s is the value of the sedimentation coefficient;

得到摩尔质量:Get the molar mass:

Figure BDA0004133111770000025
Figure BDA0004133111770000025

将沉降系数和对应的摩尔质量代入Svedberg方程,得到扩散系数值:Substitute the sedimentation coefficient and the corresponding molar mass into the Svedberg equation to obtain the value of the diffusion coefficient:

Figure BDA0004133111770000026
Figure BDA0004133111770000026

其中,D为扩散系数值,R为气体常数,T为绝对温度,ρ为溶剂密度。Among them, D is the diffusion coefficient value, R is the gas constant, T is the absolute temperature, and ρ is the solvent density.

在一些实施例中,本发明提供的一种腺相关病毒载体的空包比检测方法,得到沉降系数值和沉降分布系数值包括以下步骤:In some embodiments, the method for detecting the empty packet ratio of an adeno-associated virus vector provided by the present invention, obtaining the sedimentation coefficient value and the sedimentation distribution coefficient value includes the following steps:

将分析型超速离心机测定的数据通过SEDFIT软件进行处理;The data measured by the analytical ultracentrifuge are processed by SEDFIT software;

对处理后的数据通过对GUSSI软件处理显示的每一个峰的数据进行积分得到沉降系数值和沉降分布系数值。The value of the sedimentation coefficient and the value of the sedimentation distribution coefficient are obtained by integrating the processed data through the data of each peak displayed by the GUSSI software.

在一些实施例中,本发明提供的一种腺相关病毒载体的空包比检测方法,腺相关病毒载体的参比物质为存储在腺相关病毒载体病毒液中的制剂缓冲液。In some embodiments, the present invention provides a method for detecting the empty envelope ratio of an adeno-associated virus vector, wherein the reference substance of the adeno-associated virus vector is the preparation buffer stored in the adeno-associated virus vector virus liquid.

在一些实施例中,本发明提供的一种腺相关病毒载体的空包比检测方法,制剂缓冲液包括水、盐溶液和细胞培养基。In some embodiments, the present invention provides a method for detecting the empty envelope ratio of an adeno-associated virus vector, and the preparation buffer includes water, saline solution and cell culture medium.

在一些实施例中,本发明提供的一种腺相关病毒载体的空包比检测方法,分析型超速离心机的测定温度为15℃-25℃。In some embodiments, the present invention provides a method for detecting the empty packet ratio of an adeno-associated virus vector, and the detection temperature of the analytical ultracentrifuge is 15°C-25°C.

在一些实施例中,本发明提供的一种腺相关病毒载体的空包比检测方法,腺相关病毒载体的吸光度为0.3-1.5。In some embodiments, the present invention provides a method for detecting the empty packet ratio of an adeno-associated virus vector, wherein the absorbance of the adeno-associated virus vector is 0.3-1.5.

第二方面,本发明实施例还提供了一种腺相关病毒载体的空包比检测系统,包括:In the second aspect, the embodiment of the present invention also provides an adeno-associated virus vector empty packet ratio detection system, including:

测定模块,通过分析型超速离心机测定腺相关病毒载体的沉降系数值和与其对应的沉降分布系数值;The determination module measures the sedimentation coefficient value of the adeno-associated virus vector and the corresponding sedimentation distribution coefficient value by an analytical ultracentrifuge;

归一化处理模块,用于对沉降系数值和沉降分布系数值进行归一化处理;A normalization processing module is used for normalizing the sedimentation coefficient value and the sedimentation distribution coefficient value;

空包比计算模块,用于通过每个沉降分布系数值与沉降分布系数值和的比值计算得到空包比。The empty bag ratio calculation module is used to calculate the empty bag ratio through the ratio of each settlement distribution coefficient value to the sum of the settlement distribution coefficient values.

在一些实施例中,本发明提供的一种腺相关病毒载体的空包比检测系统,还包括:In some embodiments, an adeno-associated virus vector empty packet ratio detection system provided by the present invention further includes:

参数设定模块,用于设定分析型超速离心机的参数。The parameter setting module is used for setting the parameters of the analytical ultracentrifuge.

第三方面,本发明实施例还提供一种腺相关病毒载体的空包比检测装置,包括至少一个处理器;与至少一个处理器耦合的存储器,存储器存储有可执行指令,可执行指令在被至少一个处理器执行时使得实现如上第一方面的任一项方法的步骤。In the third aspect, the embodiment of the present invention also provides an adeno-associated virus vector empty packet ratio detection device, including at least one processor; a memory coupled to the at least one processor, the memory stores executable instructions, and the executable instructions are executed At least one processor implements the steps of any one method of the above first aspect when executed.

第四方面,本发明实施例还提供一种芯片,用于执行上述第一方面中方法的步骤。具体地,该芯片包括:处理器,用于从存储器中调用并运行计算机程序,使得安装有该芯片的设备用于执行上述第一方面中方法的步骤。In a fourth aspect, an embodiment of the present invention further provides a chip configured to execute the steps of the method in the first aspect above. Specifically, the chip includes: a processor, configured to invoke and run a computer program from the memory, so that the device installed with the chip is used to execute the steps of the method in the first aspect above.

第五方面,本发明实施例还提供一种计算机可读存储介质,计算机可读存储介质上存储有计算机程序,计算机程序被处理器执行时实现如上第一方面的任一项方法的步骤。In the fifth aspect, the embodiment of the present invention also provides a computer-readable storage medium, on which a computer program is stored, and when the computer program is executed by a processor, the steps of any one of the methods in the first aspect above are implemented.

第六方面,本发明实施例还提供一种计算机程序产品,包括计算机程序指令,该计算机程序指令使得计算机执行上述第一方面中方法的步骤。In a sixth aspect, an embodiment of the present invention further provides a computer program product, including computer program instructions, where the computer program instructions cause a computer to execute the steps of the method in the first aspect above.

可见,本发明实施例的一种腺相关病毒载体的空包比检测方法和系统,通过分析型超速离心机测定腺相关病毒载体的沉降系数值和沉降分布系数值,对其进行归一化处理,通过每个沉降分布系数值与沉降分布系数值和的比值得到空包比,很大程度上提升了对腺相关病毒载体的空包比的检测效果。It can be seen that in the method and system for detecting the empty packet ratio of an adeno-associated virus vector according to the embodiment of the present invention, the sedimentation coefficient value and the sedimentation distribution coefficient value of the adeno-associated virus vector are measured by an analytical ultracentrifuge, and then normalized , the empty packet ratio is obtained by the ratio of each sedimentation distribution coefficient value to the sum of the sedimentation distribution coefficient values, which greatly improves the detection effect of the empty packet ratio of the adeno-associated virus vector.

附图说明Description of drawings

为了更清楚地说明本发明实施例的技术方案,下面将对实施例或现有技术描述中所需要使用的附图作简单地介绍,显而易见地,下面描述中的附图仅仅是本发明的一些实施例,对于本领域普通技术人员来讲,在不付出创造性劳动性的前提下,还可以根据这些附图获得其他的附图。In order to more clearly illustrate the technical solutions of the embodiments of the present invention, the following will briefly introduce the accompanying drawings that need to be used in the description of the embodiments or the prior art. Obviously, the accompanying drawings in the following description are only some of the present invention. Embodiments, for those of ordinary skill in the art, other drawings can also be obtained according to these drawings without paying creative labor.

图1显示为本发明实施例中一种腺相关病毒载体的空包比检测方法的流程图;Fig. 1 is a flow chart showing a method for detecting the empty packet ratio of an adeno-associated virus vector in an embodiment of the present invention;

图2显示为本发明实施例中腺相关病毒载体在-80℃条件下保藏的沉降曲线示意图;Figure 2 shows a schematic diagram of the sedimentation curve of the adeno-associated virus vector stored at -80°C in the embodiment of the present invention;

图3显示为本发明实施例中腺相关病毒载体被冻融三次的沉降曲线示意图;Figure 3 shows a schematic diagram of the sedimentation curve of the adeno-associated virus vector in the embodiment of the present invention after being frozen and thawed three times;

图4显示为本发明实施例中腺相关病毒载体在室温下放置72小时的沉降曲线示意图;Figure 4 shows a schematic diagram of the sedimentation curve of the adeno-associated virus vector in the embodiment of the present invention placed at room temperature for 72 hours;

图5显示为本发明实施例中腺相关病毒载体在四种不同条件下保藏检测波长λ=220nm时的空包比分析示意图;Fig. 5 is a schematic diagram showing the empty packet ratio analysis of the adeno-associated virus vector in the embodiment of the present invention when the preservation detection wavelength λ = 220nm under four different conditions;

图6显示为本发明实施例中腺相关病毒载体在15000rpm的第一次沉降循环中的沉降曲线示意图;Figure 6 is a schematic diagram of the sedimentation curve of the adeno-associated virus vector in the first sedimentation cycle at 15000rpm in the embodiment of the present invention;

图7显示为本发明实施例中腺相关病毒载体在20000rpm的沉降曲线示意图;Figure 7 is a schematic diagram of the sedimentation curve of the adeno-associated virus vector at 20000rpm in the embodiment of the present invention;

图8显示为本发明实施例中腺相关病毒载体在15000rpm以及OD=0.3-1.5的浓度内稀释相同倍数时的沉降曲线示意图;Fig. 8 shows a schematic diagram of the sedimentation curve when the adeno-associated virus vector is diluted to the same multiple in the concentration of 15000 rpm and OD=0.3-1.5 in the embodiment of the present invention;

图9显示为本发明实施例中腺相关病毒载体在15000rpm以及20000rpm的空包比分析示意图;Figure 9 is a schematic diagram showing the empty packet ratio analysis of the adeno-associated virus vector at 15000rpm and 20000rpm in the embodiment of the present invention;

图10显示为本发明实施例中一种腺相关病毒载体的空包比检测系统的框架图。Fig. 10 is a schematic diagram of an empty packet ratio detection system for an adeno-associated virus vector in an embodiment of the present invention.

具体实施方案specific implementation plan

为使本发明实施例的目的、技术方案和优点更加清楚,下面将结合本发明实施例中的附图,对本发明实施例中的技术方案进行清楚、完整地描述,显然,所描述的实施例是本发明的一部分实施例,而不是全部的实施例。基于本发明中的实施例,本领域普通技术人员在没有做出创造性劳动的前提下所获得的所有其他实施例,都属于本发明保护的范围。In order to make the purpose, technical solutions and advantages of the embodiments of the present invention clearer, the technical solutions in the embodiments of the present invention will be clearly and completely described below in conjunction with the drawings in the embodiments of the present invention. Obviously, the described embodiments It is a part of embodiments of the present invention, but not all embodiments. Based on the embodiments of the present invention, all other embodiments obtained by persons of ordinary skill in the art without making creative efforts belong to the protection scope of the present invention.

需要说明的是,在本文中,诸如“第一”和“第二”等之类的关系术语仅仅用来将一个实体或者操作与另一个实体或操作区分开来,而不一定要求或者暗示这些实体或操作之间存在任何这种实际的关系或者顺序。在本文中,术语“包括”、“包含”或者其任何其他变体意在涵盖非排他性的包含,从而使得包括一系列要素的过程、方法、物品或者装置不仅包括那些要素,而且还包括没有明确列出的其他要素,或者是还包括为这种过程、方法、物品或者装置所固有的要素。在没有更多限制的情况下,由语句“包括一个……”限定的要素,并不排除在包括该要素的过程、方法、物品或者装置中还存在另外的相同要素。It should be noted that in this article, relative terms such as "first" and "second" are only used to distinguish one entity or operation from another entity or operation, and do not necessarily require or imply these No such actual relationship or order exists between entities or operations. As used herein, the terms "comprises," "comprises," or any other variation thereof are intended to encompass a non-exclusive inclusion such that a process, method, article, or apparatus that includes a set of elements includes not only those elements, but also includes the elements not expressly included. other elements listed, or also include elements inherent in such a process, method, article, or device. Without further limitations, an element defined by the phrase "comprising a ..." does not preclude the presence of additional identical elements in the process, method, article, or apparatus comprising that element.

腺相关病毒是一类单链线状DNA缺陷型病毒。其基因组DNA小于5kb,无包膜,外形为裸露的20面体颗粒。可以理解的是,腺相关病毒对其外部包裹的衣壳蛋白没有特别的限制。因此,根据本发明的腺相关病毒载体可以是任何血清型。Adeno-associated virus is a kind of single-stranded linear DNA defective virus. Its genomic DNA is less than 5kb, without envelope, and its appearance is naked icosahedral particles. It can be understood that the adeno-associated virus has no special limitation on its outer envelope protein. Therefore, the adeno-associated viral vector according to the present invention may be of any serotype.

腺相关病毒是储存在制剂缓冲液中的病毒液。制剂缓冲液是指一种物质,在这种情况下,该物质能够使病毒保持活性。在本发明的背景下,所用的制剂缓冲液是水、盐溶液、细胞培养基等。Adeno-associated virus is a liquid of virus stored in formulation buffer. Formulation buffer refers to a substance that, in this case, keeps the virus alive. Formulation buffers used in the context of the present invention are water, saline solutions, cell culture media, and the like.

空包比可理解为空的衣壳病毒颗粒、包装了部分基因组的病毒颗粒、包装了所需全长目的基因的完整腺相关病毒载体以及基因组过渡装载的病毒颗粒与病毒颗粒总数的比值。Empty packet ratio can be understood as the ratio of empty capsid virus particles, virus particles packaged with part of the genome, complete adeno-associated virus vectors packaged with the required full-length target gene, and genome overloaded virus particles to the total number of virus particles.

本方案发明人发现,在现有技术中,缺乏更有效的检测手段对腺相关病毒载体的空包比进行检测。本发明实施例提供如下方案:The inventors of this solution found that in the prior art, there is a lack of more effective detection means to detect the empty packet ratio of the adeno-associated virus vector. Embodiments of the present invention provide the following solutions:

使用Optima AUC分析型超速离心机进行沉降速度实验,该分析型超速离心机使用具12mm光程长度的双扇区环氧树脂(epon)中心件。将样品池放置在An-60Ti四孔转子或An-50 Ti八孔转子中。通常,在不赋予分析型超速离心机的转速的条件下平衡一段时间后进行沉降速度曲线扫描。随后,将15,000-20,000rpm的转子速度用于腺相关病毒载体的沉降速度实验。用约380-400μl的样品和约400-440μl的制剂缓冲液作为参比填充中心件的两个扇区。所有沉降实验均在T=15-25℃的温度下进行。用吸光度检测系统在λ=220-230nm下记录沉降曲线扫描。Sedimentation velocity experiments were performed using an Optima AUC analytical ultracentrifuge using a dual sector epoxy (epon) centerpiece with a 12 mm path length. Place the sample cell in an An-60Ti four-hole rotor or An-50 Ti eight-hole rotor. Typically, a sedimentation velocity curve scan is performed after equilibrating for a period of time without imparting rotational speed to the analytical ultracentrifuge. Subsequently, a rotor speed of 15,000-20,000 rpm was used for the sedimentation velocity experiment of the adeno-associated virus vector. Fill both sectors of the centerpiece with approximately 380-400 μl of sample and approximately 400-440 μl of formulation buffer as reference. All sedimentation experiments were carried out at a temperature of T = 15-25°C. Sedimentation curve scans were recorded at λ = 220-230 nm using an absorbance detection system.

如图1所示,第一方面,本发明实施例提供一种腺相关病毒载体的空包比检测方法,方法包括以下步骤:As shown in Figure 1, in the first aspect, the embodiment of the present invention provides a method for detecting the empty packet ratio of an adeno-associated virus vector, the method includes the following steps:

根据腺相关病毒载体样品选择分析型超速离心机的相关参数,相关参数包括转子速度、样品和转子中心之间的距离、温度、缓冲液、离心时间、检测时间间隔、扇区和光学窗口特性。The relevant parameters of the analytical ultracentrifuge were selected according to the adeno-associated virus vector sample, and the relevant parameters included rotor speed, distance between the sample and the center of the rotor, temperature, buffer, centrifugation time, detection time interval, sector and optical window characteristics.

通过分析型超速离心机测定腺相关病毒载体中个组分的沉降系数值和与其对应的沉降分布系数值。The sedimentation coefficient value and the corresponding sedimentation distribution coefficient value of each component in the adeno-associated virus vector were determined by an analytical ultracentrifuge.

沉降系数值其来自对分析型超速离心机实验中沉降边界移动的移动速率的测量。沉降系数值取决于颗粒的形状,其中在形状偏离球体的颗粒中,摩擦比f/f0大于1(所讨论分子的摩擦系数f/具有相同无水体积和质量的光滑球体的摩擦系数f0)沉降系数进一步取决于颗粒的分子量/摩尔质量,其中较大的颗粒沉降地更快。沉降系数值可以通过在合适的时间间隔查看沉降种类的群体来测量;如上,在沉降过程中,会产生边界,随着时间的增加,该边界会朝着更高的径向值前进。Sedimentation coefficient values are derived from measurements of the rate of movement of the sedimentation boundary in analytical ultracentrifuge experiments. The value of the sedimentation coefficient depends on the shape of the particle, where in particles whose shape deviates from a sphere, the friction ratio f/f0 is greater than 1 (friction coefficient f of the molecule in question/friction coefficient f0 of a smooth sphere with the same anhydrous volume and mass) sedimentation The coefficient further depends on the molecular weight/molar mass of the particles, with larger particles settling faster. Sedimentation coefficient values can be measured by looking at populations of subsiding species at suitable time intervals; as above, during subsidence a boundary is created that progresses towards higher radial values over time.

沉降分布系数代表相应组分的沉降界面。因为样品颗粒很小,不能直接看到它们的沉降运动,所以把离心时样品颗粒的界面移动速度看作是样品颗粒的平均沉降速度。通常使用Schlieren效应和吸收光学系统来记录界面沉降图。在沉降图样品界面一般表现为一个对称的峰,峰的最高点代表界面位置,但是如果面界图型表现为不对称峰型,或希望沉降系数测量精度更小的情况时,按峰的最高点作为界面位置就不够了,这时应该使用二阶距法计算界面位置。The sedimentation distribution coefficient represents the sedimentation interface of the corresponding component. Because the sample particles are very small, their sedimentation motion cannot be seen directly, so the interface moving speed of the sample particles during centrifugation is regarded as the average sedimentation speed of the sample particles. Interfacial sedimentation maps are typically recorded using the Schlieren effect and absorption optics. The sample interface in the sedimentation diagram generally shows a symmetrical peak, and the highest point of the peak represents the interface position. Points are not enough as the interface position, and the second-order distance method should be used to calculate the interface position.

在腺相关病毒载体的λ=220nm处监测的沉降速度实验期间的初始扫描和沉降曲线的变化。实验在15,000rpm下进行。如图2所示,腺相关病毒载体在-80℃条件下保藏。如图3所示,腺相关病毒载体被冻融三次,并在OD=0.3-1.5的浓度内稀释相同倍数。使用有限元法,结合最大熵规整化,对实验曲线进行分析。该模型认为溶液中所有组分都有相同的摩擦系数比(f/f0)。通过分析型超速离心机测定的沉降曲线得到沉降系数、摩尔质量和扩散系数值包括以下步骤:Initial scans and changes in sedimentation curves during the sedimentation velocity experiments monitored at λ = 220 nm for adeno-associated viral vectors. Experiments were performed at 15,000 rpm. As shown in Figure 2, the adeno-associated virus vector was stored at -80°C. As shown in Fig. 3, the adeno-associated virus vector was frozen and thawed three times, and diluted the same times in the concentration of OD=0.3-1.5. The experimental curves were analyzed using the finite element method, combined with maximum entropy regularization. The model assumes that all components in a solution have the same ratio of coefficients of friction (f/f 0 ). Obtaining the sedimentation coefficient, molar mass and diffusion coefficient values from the sedimentation curve determined by the analytical ultracentrifuge includes the following steps:

使用SEDFIT软件的c(s)分析模型,该模型设腺相关病毒载体溶液中所有组分均有相同的摩擦系数比,计算如下公式:Use the c(s) analysis model of SEDFIT software, all components in the adeno-associated virus carrier solution have the same coefficient of friction ratio in this model, calculate the following formula:

f0=6πηr0f 0 =6πηr 0 ,

其中,f0为高分子塌缩成密实小球的摩擦系数,η为溶剂粘度,r0为流体力学半径;Wherein, f 0 is the friction coefficient that macromolecule collapses into compact bead, η is solvent viscosity, r 0 is hydrodynamic radius;

将如下公式进行变形:Transform the following formula:

Figure BDA0004133111770000071
Figure BDA0004133111770000071

其中,M为摩尔质量,NA为摩尔数,ρp为溶液颗粒密度;Wherein, M is the molar mass, N A is the number of moles, and ρ is the particle density of the solution;

得到:get:

Figure BDA0004133111770000072
Figure BDA0004133111770000072

其中ν为溶质的比容;where ν is the specific volume of the solute;

根据Svedberg方程得到:According to the Svedberg equation:

Figure BDA0004133111770000073
Figure BDA0004133111770000073

Figure BDA0004133111770000074
Figure BDA0004133111770000074

其中s为沉降系数值;Where s is the value of the sedimentation coefficient;

得到摩尔质量:Get the molar mass:

Figure BDA0004133111770000075
Figure BDA0004133111770000075

将沉降系数和对应的摩尔质量代入Svedberg方程,得到扩散系数值:Substitute the sedimentation coefficient and the corresponding molar mass into the Svedberg equation to obtain the value of the diffusion coefficient:

Figure BDA0004133111770000076
Figure BDA0004133111770000076

其中,D为扩散系数值,R为气体常数,T为绝对温度,ρ为溶剂密度。Among them, D is the diffusion coefficient value, R is the gas constant, T is the absolute temperature, and ρ is the solvent density.

沉降系数值具有明显的微分分布,代表沉降种类的群体。从残差图可以看出,仅显示几个百分点的波动。Sedimentation coefficient values have a distinct differential distribution, representing groups of subsiding species. As can be seen from the residual plot, only a few percent fluctuations are shown.

刚刚描述这组的实验是在制备和纯化后(几乎没有储存)新鲜接收的腺相关病毒载体下,以及在室温下放置72小时,如图4所示。在检测波长λ=220nm时,与-80℃条件下保藏的样品检测时的稀释倍数相同,有四种不同条件下保藏的腺相关病毒载体的空包比分析,分别是在制备和纯化后(几乎没有储存)新鲜接收的腺相关病毒载体、进行过一次检测又再次检测的腺相关病毒载体、冻融3次的腺相关病毒载体以及在室温下放置72h的腺相关病毒载体,如图5所示。得到沉降系数值和沉降分布系数值包括以下步骤:将分析型超速离心机测定的数据通过SEDFIT软件进行处理;对处理后的数据通过对GUSSI软件处理显示的每一个峰的数据进行积分得到沉降系数值和沉降分布系数值。The set of experiments just described was performed with freshly received adeno-associated virus vectors after preparation and purification (almost no storage), and at room temperature for 72 hours, as shown in Figure 4 . When the detection wavelength λ=220nm, the dilution factor is the same as that of the sample preserved under the -80°C condition. There are four kinds of analysis of the empty envelope ratio of the adeno-associated virus vector preserved under different conditions, respectively after preparation and purification ( Almost no storage) freshly received adeno-associated virus vectors, adeno-associated virus vectors that have been tested once and tested again, adeno-associated virus vectors that have been frozen and thawed three times, and adeno-associated virus vectors that have been placed at room temperature for 72 hours, as shown in Figure 5 Show. Obtaining the sedimentation coefficient value and the sedimentation distribution coefficient value includes the following steps: the data measured by the analytical ultracentrifuge is processed by SEDFIT software; the processed data is obtained by integrating the data of each peak displayed by the GUSSI software to obtain the sedimentation coefficient value and the value of the sedimentation distribution coefficient.

对沉降系数值和沉降分布系数值进行归一化处理。把腺相关病毒载体在各个沉降系数值的沉降分布系数值映射到(0,1)范围内处理,通过每个沉降分布系数值与沉降分布系数值和的比值得到空包比,即腺相关病毒载体在各个沉降系数值的沉降分布系数值与沉降系数值在20-180之间的沉降分布系数值之和的比值。The sedimentation coefficient value and the sedimentation distribution coefficient value are normalized. Map the sedimentation distribution coefficient value of each sedimentation coefficient value of the adeno-associated virus vector to the range of (0,1) for processing, and obtain the empty packet ratio by the ratio of each sedimentation distribution coefficient value to the sum of the sedimentation distribution coefficient values, that is, the adeno-associated virus The ratio of the sedimentation distribution coefficient value of the carrier at each sedimentation coefficient value to the sum of the sedimentation distribution coefficient values of the sedimentation coefficient value between 20-180.

分析型超速离心机的优点是保留了封闭扇形单元溶剂中的质量平衡。如图6所示,15000rpm的第一次沉降循环中的实验,之后将样品池从离心机转子中取出并振摇,以实现沉降物质的重新悬浮。之后,在完全相同的条件下进行另一次沉降速度实验,然后进行相应的沉降分析。所得结果非常相似,表明在特定存储时间使用溶液获得的结果具有可重复性,实验是可重复的。An advantage of the analytical ultracentrifuge is that it preserves the mass balance in the closed sector cell solvent. As shown in Figure 6, the experiment in the first settling cycle at 15,000 rpm, after which the sample cell was removed from the centrifuge rotor and shaken to achieve resuspension of the settled material. Afterwards, another settling velocity experiment was performed under exactly the same conditions, followed by a corresponding settling analysis. The results obtained are very similar, demonstrating the reproducibility of the results obtained using the solutions at specific storage times and that the experiments are repeatable.

如图7所示,腺相关病毒载体在20,000rpm;如图8所示,在15000rpm,并在OD=0.3-1.5的浓度内稀释相同倍数,在λ=220nm处监测的沉降速度实验期间的初始扫描和沉降曲线的变化。空包比分析结果如图9所示,还表明15000-20000rpm的沉降不会显著影响颗粒完整性和腺相关病毒载体的估计信号强度。As shown in Figure 7, the adeno-associated virus vector was at 20,000rpm; as shown in Figure 8, at 15000rpm, and diluted the same multiple in the concentration of OD=0.3-1.5, the initial sedimentation velocity during the experiment monitored at λ=220nm Changes in sweep and sedimentation curves. The results of the empty packet ratio analysis are shown in Fig. 9, which also indicated that the sedimentation at 15000-20000rpm did not significantly affect the particle integrity and the estimated signal intensity of the AAV vector.

如图10所示,第二方面,本发明实施例还提供一种腺相关病毒载体的空包比检测系统,包括参数设定模块、测定模块、归一化处理模块和空包比计算模块。参数设定模块用于设定分析型超速离心机的参数,测定模块用于通过分析型超速离心机测定腺相关病毒载体的沉降系数值和与其对应的沉降分布系数值,归一化处理模块用于对所述沉降系数值和沉降分布系数值进行归一化处理,空包比计算模块用于通过每个沉降分布系数值与沉降分布系数值和的比值计算得到空包比。As shown in FIG. 10 , in the second aspect, the embodiment of the present invention also provides an adeno-associated virus vector empty packet ratio detection system, including a parameter setting module, a measurement module, a normalization processing module and an empty packet ratio calculation module. The parameter setting module is used to set the parameters of the analytical ultracentrifuge, the determination module is used to determine the sedimentation coefficient value of the adeno-associated virus vector and the corresponding sedimentation distribution coefficient value through the analytical ultracentrifuge, and the normalization processing module is used In order to normalize the sedimentation coefficient value and the sedimentation distribution coefficient value, the empty envelope ratio calculation module is used to calculate the empty envelope ratio through the ratio of each sedimentation distribution coefficient value to the sum of the sedimentation distribution coefficient values.

第三方面,本发明实施例还提供一种腺相关病毒载体的空包比检测装置,包括:In the third aspect, the embodiment of the present invention also provides an adeno-associated virus vector empty packet ratio detection device, including:

至少一个处理器;与至少一个处理器耦合的存储器,存储器存储有可执行指令,其中,可执行指令在被至少一个处理器执行时使得实现本发明第一方面的方法步骤。At least one processor; a memory coupled to the at least one processor, the memory storing executable instructions, wherein the executable instructions, when executed by the at least one processor, cause the implementation of the method steps of the first aspect of the present invention.

本发明实施例提供的一种腺相关病毒载体的空包比检测装置,处理器和存储器可以单独设置,也可以集成在一起。In the device for detecting the empty packet ratio of an adeno-associated virus vector provided by an embodiment of the present invention, the processor and the memory can be set separately or integrated together.

例如,存储器可以包括随机存储器、闪存、只读存储器、可编程只读存储器、非易失性存储器或寄存器等。处理器可以是中央处理器(Central Processing Unit,CPU)等。或者是图像处理器(Graphic Processing Unit,GPU)存储器可以存储可执行指令。处理器可以执行在存储器中存储的可执行指令,从而实现本文描述的各个过程。For example, the memory may include random access memory, flash memory, read-only memory, programmable read-only memory, non-volatile memory or registers, and the like. The processor may be a central processing unit (Central Processing Unit, CPU) or the like. Or the image processor (Graphic Processing Unit, GPU) memory can store executable instructions. A processor may execute executable instructions stored in memory to implement the various processes described herein.

可以理解,本实施例中的存储器可以是易失性存储器或非易失性存储器,或可包括易失性和非易失性存储器两者。其中,非易失性存储器可以是ROM(Read-OnlyMemory,只读存储器)、PROM(ProgrammableROM,可编程只读存储器)、EPROM(ErasablePROM,可擦除可编程只读存储器)、EEPROM(ElectricallyEPROM,电可擦除可编程只读存储器)或闪存。易失性存储器可以是RAM(RandomAccessMemory,随机存取存储器),其用作外部高速缓存。通过示例性但不是限制性说明,许多形式的RAM可用,例如SRAM(StaticRAM,静态随机存取存储器)、DRAM(DynamicRAM,动态随机存取存储器)、SDRAM(SynchronousDRAM,同步动态随机存取存储器)、DDRSDRAM(DoubleDataRate SDRAM,双倍数据速率同步动态随机存取存储器)、ESDRAM(Enhanced SDRAM,增强型同步动态随机存取存储器)、SLDRAM(SynchlinkDRAM,同步连接动态随机存取存储器)和DRRAM(DirectRambusRAM,直接内存总线随机存取存储器)。本文描述的存储器旨在包括但不限于这些和任意其它适合类型的存储器。It can be understood that the memory in this embodiment may be a volatile memory or a nonvolatile memory, or may include both volatile and nonvolatile memories. Among them, the non-volatile memory can be ROM (Read-Only Memory, read-only memory), PROM (ProgrammableROM, programmable read-only memory), EPROM (ErasablePROM, erasable programmable read-only memory), EEPROM (Electrically Erasable Programmable Read-Only Memory) or Flash. The volatile memory may be RAM (Random Access Memory, random access memory), which is used as an external cache. By way of illustration and not limitation, many forms of RAM are available such as SRAM (Static RAM, Static Random Access Memory), DRAM (Dynamic RAM, Dynamic Random Access Memory), SDRAM (Synchronous DRAM, Synchronous Dynamic Random Access Memory), DDRSDRAM (DoubleDataRate SDRAM, double data rate synchronous dynamic random access memory), ESDRAM (Enhanced SDRAM, enhanced synchronous dynamic random access memory), SLDRAM (SynchlinkDRAM, synchronous connection dynamic random access memory) and DRRAM (DirectRambusRAM, direct memory bus random access memory). The memories described herein are intended to include, but are not limited to, these and any other suitable types of memories.

在一些实施方式中,存储器存储了如下的元素,升级包、可执行单元或者数据结构,或者他们的子集,或者他们的扩展集:操作系统和应用程序。In some embodiments, the memory stores the following elements, upgrade packages, executable units or data structures, or a subset thereof, or an extended set thereof: an operating system and an application program.

其中,操作系统,包含各种系统程序,例如框架层、核心库层、驱动层等,用于实现各种基础业务以及处理基于硬件的任务。应用程序,包含各种应用程序,用于实现各种应用业务。实现本发明实施例方法的程序可以包含在应用程序中。Among them, the operating system includes various system programs, such as framework layer, core library layer, driver layer, etc., which are used to realize various basic services and process hardware-based tasks. The application program includes various application programs and is used to implement various application services. Programs for implementing the methods of the embodiments of the present invention may be contained in application programs.

在本发明实施例中,处理器通过调用存储器存储的程序或指令,具体的,可以是应用程序中存储的程序或指令,处理器用于执行第一方面所提供的方法步骤。In the embodiment of the present invention, the processor invokes the program or instruction stored in the memory, specifically, the program or instruction stored in the application program, and the processor is configured to execute the method steps provided in the first aspect.

第四方面,本发明实施例还提供一种芯片,用于执行上述第一方面中的方法。具体地,该芯片包括:处理器,用于从存储器中调用并运行计算机程序,使得安装有该芯片的设备用于执行上述第一方面中的方法。In a fourth aspect, an embodiment of the present invention further provides a chip configured to execute the method in the first aspect above. Specifically, the chip includes: a processor, configured to call and run a computer program from the memory, so that the device installed with the chip is used to execute the method in the first aspect above.

第五方面,本发明实施例还提供一种计算机可读存储介质,计算机可读存储介质上存储有计算机程序,计算机程序被处理器执行时实现本发明第一方面的方法的步骤。In the fifth aspect, the embodiment of the present invention also provides a computer-readable storage medium, on which a computer program is stored, and when the computer program is executed by a processor, the steps of the method in the first aspect of the present invention are implemented.

例如,机器可读存储介质可以包括但不限于各种已知和未知类型的非易失性存储器。For example, a machine-readable storage medium may include, but is not limited to, various known and unknown types of nonvolatile memory.

第六方面,本发明实施例还提供一种计算机程序产品,包括计算机程序指令,该计算机程序指令使得计算机执行上述第一方面中的方法。In a sixth aspect, an embodiment of the present invention further provides a computer program product, including computer program instructions, where the computer program instructions cause a computer to execute the method in the first aspect above.

综上所述,本发明实施例的一种腺相关病毒载体的空包比检测方法和系统,通过分析型超速离心机测定腺相关病毒载体的沉降系数值和沉降分布系数值,对其进行归一化处理,通过每个沉降分布系数值与沉降分布系数值和的比值得到空包比,很大程度上提升了对腺相关病毒载体的空包比的检测效果。To sum up, in the embodiment of the present invention, an adeno-associated virus vector empty packet ratio detection method and system uses an analytical ultracentrifuge to measure the sedimentation coefficient value and sedimentation distribution coefficient value of the adeno-associated virus vector, and normalizes them. In the normalization process, the empty packet ratio is obtained by the ratio of each sedimentation distribution coefficient value to the sum of the sedimentation distribution coefficient values, which greatly improves the detection effect of the empty packet ratio of the adeno-associated virus vector.

本领域技术人员可以明白的是,结合本文中所公开的实施例描述的各示例的单元及算法步骤能够以电子硬件、或者软件和电子硬件的结合来实现。这些功能是以硬件还是软件方式来实现,取决于技术方案的特定应用和设计约束条件。本领域技术人员可以针对每个特定的应用,使用不同的方式来实现所描述的功能,但是这种实现并不应认为超出本申请的范围。Those skilled in the art can understand that the units and algorithm steps of the examples described in conjunction with the embodiments disclosed herein can be implemented by electronic hardware, or a combination of software and electronic hardware. Whether these functions are implemented in hardware or software depends on the specific application and design constraints of the technical solution. Those skilled in the art may implement the described functions in different ways for each specific application, but such implementation should not be considered as exceeding the scope of the present application.

在本申请实施例中,所公开的系统、装置和方法可以通过其它方式来实现。例如,单元的划分仅仅为一种逻辑功能划分,在实际实现时还可以有另外的划分方式。例如,多个单元或组件可以进行组合或者可以集成到另一个系统中。另外,各个单元之间的耦合可以是直接耦合或间接耦合。另外,在本申请实施例中的各功能单元可以集成在一个处理单元中,也可以是单独的物理存在等等。In the embodiments of the present application, the disclosed systems, devices and methods may be implemented in other ways. For example, the division of units is only a logical function division, and there may be other division methods in actual implementation. For example, multiple units or components may be combined or integrated into another system. In addition, the coupling between the respective units may be direct coupling or indirect coupling. In addition, each functional unit in the embodiment of the present application may be integrated into one processing unit, or may exist independently, etc. physically.

应理解,在本申请的各种实施例中,各过程的序号的大小并不意味着执行顺序的先后,各过程的执行顺序应以其功能和内在逻辑确定,而不应对本申请的实施例的实施过程构成任何限定。It should be understood that in various embodiments of the present application, the sequence numbers of the processes do not mean the order of execution, and the execution order of the processes should be determined by their functions and internal logic, rather than by the embodiments of the present application. The implementation process constitutes any limitation.

所述功能如果以软件功能单元的形式实现并作为独立的产品销售或使用时,可以存储在机器可读存储介质中。因此,本申请的技术方案可以以软件产品的形式来体现,该软件产品可以存储在机器可读存储介质中,其可以包括若干指令用以使得电子设备执行本申请实施例所描述的技术方案的全部或部分过程。上述存储介质可以包括ROM、RAM、可移动盘、硬盘、磁盘或者光盘等各种可以存储程序代码的介质。If the functions are realized in the form of software function units and sold or used as an independent product, they can be stored in a machine-readable storage medium. Therefore, the technical solution of the present application can be embodied in the form of a software product, and the software product can be stored in a machine-readable storage medium, which can include several instructions to make the electronic device execute the technical solution described in the embodiment of the present application. all or part of the process. The above-mentioned storage medium may include ROM, RAM, removable disk, hard disk, magnetic disk or optical disk, and other various media that can store program codes.

以上内容仅为本申请的具体实施方式,本申请的保护范围并不局限于此。本领域技术人员在本申请所公开的技术范围内可以进行变化或替换,这些变化或替换都应当在本申请的保护范围之内。The above content is only a specific implementation manner of the present application, and the protection scope of the present application is not limited thereto. Those skilled in the art may make changes or substitutions within the technical scope disclosed in this application, and these changes or substitutions shall all be within the protection scope of this application.

Claims (12)

1. A method for detecting the empty ratio of an adeno-associated viral vector, comprising the steps of:
determining the sedimentation coefficient value of the adeno-associated virus vector and the sedimentation distribution coefficient value corresponding to the sedimentation coefficient value by an analytical ultracentrifuge;
normalizing the sedimentation coefficient value and the sedimentation distribution coefficient value;
and obtaining the blank ratio by the ratio of each sedimentation distribution coefficient value to the sum of sedimentation distribution coefficient values.
2. The method for detecting the void fraction of adeno-associated virus vector according to claim 1, wherein the sedimentation curve measured by the analytical ultracentrifuge is used for obtaining sedimentation coefficients, molar masses and diffusion coefficient values, comprising the steps of:
using the c(s) analytical model of the SEDFIT software, which provides that all components in the adeno-associated viral vector solution have the same coefficient of friction ratio, the following formula is calculated:
f 0 =6πηr 0
wherein f 0 The friction coefficient of the polymer collapsed into compact pellets, eta is the viscosity of the solvent, r 0 Is a hydrodynamic radius;
the following formula is deformed:
Figure FDA0004133111760000011
wherein M is molar mass, N A In terms of mole number ρ p Is the density of solution particles;
the method comprises the following steps:
Figure FDA0004133111760000012
wherein v is the specific volume of the solute;
according to Svedberg equation:
Figure FDA0004133111760000013
Figure FDA0004133111760000014
wherein s is a sedimentation coefficient value;
the molar mass is obtained:
Figure FDA0004133111760000015
substituting the sedimentation coefficient and the corresponding molar mass into the Svedberg equation to obtain a diffusion coefficient value:
Figure FDA0004133111760000021
wherein D is a diffusion coefficient value, R is a gas constant, T is an absolute temperature, and ρ is a solvent density.
3. The method for detecting the void fraction of an adeno-associated viral vector according to claim 1, wherein obtaining the sedimentation coefficient value and the sedimentation distribution coefficient value comprises the steps of:
processing the data measured by the analytical ultracentrifuge through SEDFIT software;
and integrating the processed data by integrating the data of each peak displayed by GUSSI software processing to obtain the sedimentation coefficient value and the sedimentation distribution coefficient value.
4. The method for detecting the empty ratio of adeno-associated virus vectors according to claim 1, wherein the method comprises the steps of: the reference substance of the adeno-associated viral vector is a preparation buffer solution stored in the adeno-associated viral vector virus liquid.
5. The method for detecting the empty ratio of adeno-associated virus vectors according to claim 4, wherein the method comprises the steps of: the formulation buffer includes water, saline solution, and cell culture medium.
6. The method for detecting the empty ratio of adeno-associated virus vectors according to claim 1, wherein the method comprises the steps of: the measurement temperature of the analytical ultracentrifuge is 15-25 ℃.
7. The method for detecting the empty ratio of adeno-associated virus vectors according to claim 1, wherein the method comprises the steps of: the absorbance of the adeno-associated viral vector is 0.3-1.5.
8. A void fraction detection system for adeno-associated viral vectors, comprising:
a measurement module for measuring the sedimentation coefficient value of the adeno-associated virus vector and the sedimentation distribution coefficient value corresponding to the sedimentation coefficient value by an analytical ultracentrifuge;
the normalization processing module is used for carrying out normalization processing on the sedimentation coefficient value and the sedimentation distribution coefficient value;
and the blank ratio calculation module is used for calculating the blank ratio through the ratio of each sedimentation distribution coefficient value to the sum of the sedimentation distribution coefficient values.
9. The void fraction detection system of claim 8, further comprising:
and the parameter setting module is used for setting parameters of the analytical ultracentrifuge.
10. A void ratio detection device for adeno-associated viral vectors comprises at least one processor; a memory coupled to the at least one processor, the memory storing executable instructions, characterized by: the executable instructions, when executed by the at least one processor, cause the steps of the method according to any one of claims 1 to 7 to be carried out.
11. A chip, characterized in that: comprising a processor for calling and running a computer program from a memory, such that a device on which the chip is mounted performs the steps of the method according to any of claims 1 to 7.
12. A computer-readable storage medium having a computer program stored thereon, characterized in that: the computer program, when executed by a processor, implements the steps of the method of any of the preceding claims 1 to 7.
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