CN100357436C - SiRNA for inhibiting Stat3 gene expression and preparation thereof - Google Patents
SiRNA for inhibiting Stat3 gene expression and preparation thereof Download PDFInfo
- Publication number
- CN100357436C CN100357436C CNB2005101142547A CN200510114254A CN100357436C CN 100357436 C CN100357436 C CN 100357436C CN B2005101142547 A CNB2005101142547 A CN B2005101142547A CN 200510114254 A CN200510114254 A CN 200510114254A CN 100357436 C CN100357436 C CN 100357436C
- Authority
- CN
- China
- Prior art keywords
- stat3
- sirna
- expression
- gene
- plasmid
- Prior art date
- Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
- Expired - Fee Related
Links
Images
Landscapes
- Medicines That Contain Protein Lipid Enzymes And Other Medicines (AREA)
Abstract
本发明公开了一种抑制Stat3基因表达的siRNA及其制备方法。抑制Stat3基因表达的siRNA,该siRNA表达质粒包括:pBS/U6载体;编码特异性抑制Stat3基因表达的siRNA的DNA片段。本发明利用DNA介导的RNA干扰技术构建Stat3基因特异性的RNAi,用于观察细胞内Stat3被特异性抑制的情况下信号通路的变化,从而为在细胞系中研究Stat3的功能提供了有效的工具,在治疗与研究与Stat3相关的肿瘤领域中有广阔的应用前景。
The invention discloses a siRNA for inhibiting Stat3 gene expression and a preparation method thereof. The siRNA inhibiting the expression of the Stat3 gene, the siRNA expression plasmid comprising: pBS/U6 vector; the DNA fragment encoding the siRNA specifically inhibiting the expression of the Stat3 gene. The present invention uses DNA-mediated RNA interference technology to construct Stat3 gene-specific RNAi, which is used to observe the changes in signaling pathways when Stat3 is specifically inhibited in cells, thereby providing an effective method for studying the function of Stat3 in cell lines. It has broad application prospects in the field of treatment and research of tumors related to Stat3.
Description
技术领域technical field
本发明涉及一种siRNA,特别涉及一种抑制Stat3(signal transducer andantivator oftranscription信号转导及转录活化因子)基因表达的siRNA和及其制备方法。The present invention relates to an siRNA, in particular to an siRNA for inhibiting Stat3 (signal transducer and activator oftranscription) gene expression and a preparation method thereof.
背景技术Background technique
RNAi(RNA interference)技术是近几年发展起来的一种抑制基因表达的新方法,该方法是将功能未知基因编码区(外显子)或启动子区,以反向重复的方式由同一启动子控制表达,这样在转基因个体内转录出的RNA可形成dsRNA,产生RNA干扰,使目的基因沉默。这一现象已在植物、真菌(fungi)、锥虫(trypanosome)、涡虫(planaria)、囊虫(hydra)、果蝇(drosoph ila)、线虫(canenorhabdit is elegans)、斑马鱼(zeb rafish)、老鼠早期胚胎等不同种属的生物体中得以发现。RNAi (RNA interference) technology is a new method of inhibiting gene expression developed in recent years. This method is to use the same gene promoter region (exon) or promoter region with unknown function in the way of reverse repetition. In this way, the RNA transcribed in the transgenic individual can form dsRNA, produce RNA interference, and silence the target gene. This phenomenon has been observed in plants, fungi, trypanosomes, planaria, hydra, drosophila, nematodes (canenorhabdit is elegans), zebrafish , mouse early embryos and other organisms have been found in different species.
RNAi的外源性或内源性的dsRNA在细胞内与一种RNA酶III(RNAase III核酸内切酶)--Dicer结合,随即被切割成21~23nt的带有3′端单链尾巴及磷酸化的5′端的短链dsRNA(double-stranded RNA),是RNAi的起始诱导物,即siRNA(small interference RNA)。siRNA与Dicer形成RNA诱导沉默复合物(RNAinduces silencing comple,RISC)。siRNA作为引导序列,按照碱基互补原则识别靶基因转录出的mRNA,并引导RICS结合mRNA。随后siRNA与mRNA在复合体中换位,核酸酶Dicer将mRNA切割成21~23nt的片段,特异性地抑制靶基因的表达。新产生的dsRNA片段可再次形成RISC,继续降解mRNA,从而产生级联放大效应。因此,每个细胞只需要几个siRNA分子就能够引起强烈的RNAi效应。此外,siRNA还可以在RNA依赖性RNA聚合酶(RNA dependent RNApolymerase,RdRp)的作用下进行大量扩增,并转运出细胞,使RNAi扩散到整个机体并可以传代。The exogenous or endogenous dsRNA of RNAi binds to Dicer, an RNase III (RNAase III endonuclease) in the cell, and is then cut into 21-23 nt single-stranded tails with 3′ ends and The short dsRNA (double-stranded RNA) at the phosphorylated 5′ end is the initial inducer of RNAi, that is, siRNA (small interference RNA). siRNA and Dicer form RNA-induced silencing complex (RNAinduces silencing complex, RISC). siRNA acts as a guide sequence, which recognizes the mRNA transcribed from the target gene according to the principle of base complementarity, and guides RICS to bind to the mRNA. Then the siRNA and mRNA transpose in the complex, and the nuclease Dicer cuts the mRNA into 21-23nt fragments to specifically inhibit the expression of the target gene. The newly generated dsRNA fragments can form RISC again and continue to degrade mRNA, thereby producing a cascade amplification effect. Therefore, only a few siRNA molecules per cell are needed to elicit a strong RNAi effect. In addition, siRNA can also be amplified in large quantities under the action of RNA-dependent RNA polymerase (RdRp), and transported out of cells, so that RNAi can spread throughout the body and be passaged.
目前RNAi技术已经广泛用于基因功能、信号转导通路方法以及肿瘤基因治疗的研究领域。At present, RNAi technology has been widely used in the research fields of gene function, signal transduction pathway methods and tumor gene therapy.
RNAi识别可以精确到一个核苷酸,对由野生型点突变形成的癌基因如ras、p53等,能够产生准确有效的封闭效果,野生型基因则不受影响,可以用于阻断某些突变基因的表达,或者由蛋白过量表达引起的恶变。RNAi在肿瘤基因治疗上与基因替代、反义寡核苷酸治疗、细胞因子基因治疗等传统的基因治疗方法相比,具有特异、高效、毒性小的特点,因此可用来对一些肿瘤进行治疗。RNAi技术用于抑制肿瘤生长因子的表达,可以抑制动物模型的肿瘤生长,并已经应用于快速鉴别新的肿瘤靶目标。由于肿瘤是多基因、多因素疾病,单个癌基因的抑制往往很难达到治疗效果,RNAi技术能够同时抑制多个不同基因,而且抑制效果互不干扰。RNAi recognition can be accurate to one nucleotide, and can produce accurate and effective blocking effects on oncogenes formed by wild-type point mutations, such as ras, p53, etc., while wild-type genes are not affected, and can be used to block certain mutations Gene expression, or malignant transformation caused by protein overexpression. Compared with traditional gene therapy methods such as gene replacement, antisense oligonucleotide therapy, and cytokine gene therapy, RNAi has the characteristics of specificity, high efficiency, and low toxicity in tumor gene therapy, so it can be used to treat some tumors. RNAi technology is used to inhibit the expression of tumor growth factors, which can inhibit the growth of tumors in animal models, and has been applied to rapidly identify new tumor targets. Since tumors are multi-gene and multi-factor diseases, the inhibition of a single oncogene is often difficult to achieve therapeutic effects. RNAi technology can inhibit multiple different genes at the same time, and the inhibitory effects do not interfere with each other.
RNAi对人类宫颈癌细胞Hela、非小细胞肺H1299、头颈部鳞状细胞癌C33、骨肉瘤U22OS、乳腺癌MCF27等细胞系实验中肿瘤相关基因的抑制作用也很明显。The inhibitory effect of RNAi on tumor-related genes in human cervical cancer cell Hela, non-small cell lung H1299, head and neck squamous cell carcinoma C33, osteosarcoma U22OS, breast cancer MCF27 and other cell lines is also obvious.
siRNA的序列专一性非常严谨,与靶mRNA之间一个碱基错配都会显著削弱基因沉默的效果。The sequence specificity of siRNA is very strict, and a single base mismatch with the target mRNA will significantly weaken the effect of gene silencing.
Stat(signal transducer and antivators of transcription)信号转导及转录活化因子)是存在于细胞质中的一类潜在的信号转导和转录激活因子。其蛋白家族有7个成员,Stat1,2,3,4,5a,5b,和6。其中的Stat3在细胞的增殖、分化、存活以及胚胎发育中都有非常重要的作用。Stat3信号通道的过度激活破坏了正常细胞的增殖、生存活动,能够诱导出某些转化细胞的特性;过表达的Stat3调节了细胞周期的控制和凋亡活动,表明Stat3的激活可能与致癌作用有关,阻断Stat3信号通路有望能够预防和治疗人类肿瘤。因此利用上述的RNAi技术来阻断Stat3信号通路可以预防和治疗人类肿瘤。Stat (signal transducer and activators of transcription) signal transducer and activator of transcription) is a class of potential signal transducer and activator of transcription existing in the cytoplasm. Its protein family has 7 members, Stat1, 2, 3, 4, 5a, 5b, and 6. Among them, Stat3 plays a very important role in cell proliferation, differentiation, survival and embryonic development. The overactivation of Stat3 signaling channel destroys the proliferation and survival activities of normal cells, and can induce the characteristics of some transformed cells; overexpressed Stat3 regulates the control of cell cycle and apoptosis, indicating that the activation of Stat3 may be related to carcinogenesis , Blocking the Stat3 signaling pathway is expected to prevent and treat human tumors. Therefore, using the above-mentioned RNAi technology to block the Stat3 signaling pathway can prevent and treat human tumors.
发明内容Contents of the invention
本发明的目的是提供一种抑制Stat3基因表达的siRNA。它利用DNA介导的RNA干扰技术构建Stat3基因特异性的RNAi,用于观察细胞内Stat3被特异性抑制的情况下表达及信号通路的变化,为从细胞系研究Stat3的功能提供了有效的工具,在研究和治疗与Stat3相关的肿瘤领域有广阔的应用前景。The purpose of the present invention is to provide a siRNA for inhibiting Stat3 gene expression. It uses DNA-mediated RNA interference technology to construct Stat3 gene-specific RNAi, which is used to observe the expression and signaling pathway changes when Stat3 is specifically inhibited in cells, and provides an effective tool for studying the function of Stat3 from cell lines , has broad application prospects in the field of research and treatment of tumors related to Stat3.
本发明的另一目的是提供一种抑制Stat3基因表达的siRNA的制备方法。Another object of the present invention is to provide a method for preparing siRNA that inhibits Stat3 gene expression.
本发明的上述目的可以通过如下措施实现:Above-mentioned purpose of the present invention can be realized by following measures:
设计抑制Stat3基因表达的双链siRNA片段。Stat3 RNAi设计序列及其靶向NCBI网站Genbank数据库小鼠Stat3基因(序列号为AY299489)位置分别为:Design double-stranded siRNA fragments to inhibit Stat3 gene expression. The designed sequence of Stat3 RNAi and its target mouse Stat3 gene (serial number AY299489) in Genbank database of NCBI website are as follows:
第一条(作用部位157-174):Article 1 (action site 157-174):
5’>TCACATGCCACGTTGGTG CACCAACGTGGCATGTGACTTTTTT<3’5'>TCACATGCCACGTTGGTG CACCAACGTGGCATGTGACTTTTTT<3'
第二条(作用部位1226-1243):Article 2 (Action site 1226-1243):
5’>AGTTCAAGCACCTGACCC GGGTCAGGTGCTTGAACTCTTTTTT<3’5'>AGTTCAAGCACCTGACCC GGGTCAGGTGCTTGAACTCTTTTTTT<3'
第三条(作用部位1936-1953):Article 3 (Action site 1936-1953):
5’>CAGCTGAACAACATGTCA TGACATGTTGTTCAGCTGCTTTTTT<3’5'>CAGCTGAACAACATGTCA TGACATGTTGTTCAGCTGCTTTTTT<3'
第四条(作用部位2334-2351):Article 4 (Action site 2334-2351):
5’>AAGCTGCAGAGACGTGAC GTCACGTCTCTGCAGCTTCTTTTTT<3’5'>AAGCTGCAGAGACGTGAC GTCACGTCTCTGCAGCTTCTTTTTT<3'
本发明所述siRNA可以通过体外化学合成并在体内表达。The siRNA of the present invention can be chemically synthesized in vitro and expressed in vivo.
其中U6启动子用于启动下游DNA的转录,其转录起始位点是一个G(鸟嘌呤),转录中止子为连续5-6个T(胸腺嘧啶)。编码区DNA可以转录出具有特异序列的mRNA,该mRNA并不编码可以翻译的氨基酸,而是在细胞内自动形成一个带有环的发卡式RNA,该发卡式RNA可以介导与其具有相同序列的mRNA的降解。Wherein the U6 promoter is used to initiate the transcription of downstream DNA, the transcription start site is a G (guanine), and the transcription stopper is 5-6 consecutive T (thymine). The DNA in the coding region can be transcribed into mRNA with a specific sequence. The mRNA does not encode amino acids that can be translated, but automatically forms a hairpin RNA with a loop in the cell. mRNA degradation.
本发明含III型RNA聚合酶真核启动子的载体为pBS/U6载体,编码特异性抑制Stat3基因表达的siRNA的DNA片段。The vector containing the type III RNA polymerase eukaryotic promoter of the present invention is a pBS/U6 vector, which encodes a DNA fragment of siRNA that specifically inhibits Stat3 gene expression.
本发明所述siRNA表达质粒的分子类型为环状DNA,大小为3303bp。The molecular type of the siRNA expression plasmid of the present invention is circular DNA, with a size of 3303bp.
本发明人致力与于抗肿瘤和基因工程研究,用多年积累的知识和经验开展RNAi抗病毒治疗研究。通过大量的研究和实验证明,利用DNA介导的RNA干扰技术构建Stat3基因特异性的RNAi,可以用于观察细胞内Stat3被特异性抑制的情况下表达及信号通路的变化,为本发明为从细胞系研究Stat3的功能提供了有效的工具,因此本发明被列为国家自然基金项目和重庆市人口与计划生育委员会2004年第三批科研基金项目。The inventor is committed to anti-tumor and genetic engineering research, and uses years of accumulated knowledge and experience to carry out RNAi anti-viral treatment research. A large number of studies and experiments have proved that using DNA-mediated RNA interference technology to construct Stat3 gene-specific RNAi can be used to observe the changes in expression and signaling pathways when Stat3 is specifically inhibited in cells, which is the purpose of the present invention. The cell line provides an effective tool for studying the function of Stat3, so the invention is listed as the third batch of scientific research fund projects in 2004 of the National Natural Science Foundation of China and the Chongqing Municipal Population and Family Planning Commission.
本发明采用RNA干扰(RNAinterference,RNAi)阻抑Stat3基因的表达。通过外源导入与内源基因同源的dsRNA(double-stranded RNA-即双链RNA)来介导目标mRNA的降解,从而导致生物体内特异基因的沉默。RNA干扰通过关闭特异基因的表达在基因表达调控、缺陷识别及疾病基因的治疗等方面显出极为重要的应用价值。The present invention uses RNA interference (RNA interference, RNAi) to suppress the expression of the Stat3 gene. The degradation of the target mRNA is mediated by exogenously introducing dsRNA (double-stranded RNA-that is, double-stranded RNA) that is homologous to the endogenous gene, thereby leading to the silencing of specific genes in the organism. RNA interference shows extremely important application value in gene expression regulation, defect recognition and disease gene therapy by shutting down the expression of specific genes.
本发明针对胚胎时期Stat3对细胞生长、存活和分化神经发育情况,针对小鼠Stat3的RNA干扰质粒可用于小鼠胚胎,设计出抑制Stat3基因表达的重组质粒pBS/U6-Stat3-RNAi。用siRNA作为引导序列,按照碱基互补原则识别靶基因转录出的mRNA,并引导RICS结合mRNA。随后siRNA与mRNA在复合体中换位,核酸酶Dicer将mRNA切割成21~23nt的片段,特异性地抑制靶基因的表达。新产生的dsRNA片段可再次形成RISC,继续降解mRNA,从而产生级联放大效应,使Stat3的RNA干扰的效果明显,几乎可以完全抑制掉外源性的Stat3。The invention aims at the effects of Stat3 on cell growth, survival and differentiation in the embryonic stage, and the RNA interference plasmid for mouse Stat3 can be used in mouse embryos, and designs a recombinant plasmid pBS/U6-Stat3-RNAi that inhibits Stat3 gene expression. Using siRNA as a guide sequence, it recognizes the mRNA transcribed from the target gene according to the principle of base complementarity, and guides RICS to bind to the mRNA. Then the siRNA and mRNA transpose in the complex, and the nuclease Dicer cuts the mRNA into 21-23nt fragments to specifically inhibit the expression of the target gene. The newly generated dsRNA fragments can form RISC again and continue to degrade mRNA, thereby producing a cascade amplification effect, which makes the RNA interference effect of Stat3 obvious, and can almost completely inhibit the exogenous Stat3.
本发明使用最新发展起来的RNA干扰技术,直接从转录水平上降低Stat3基因mRNA的积累,并直接导致Stat3蛋白量积累的减少进而抑制Stat3信号通路。本发明相对用Stat3反义寡核苷酸,Stat3显性负性蛋白Stat3β,Stat3上游特异性受体的拮抗剂以及受体中和抗体,或者天然存在的诸如SOCS和PIAS等蛋白抑制Stat3信号传导通路治疗肿瘤的技术和方法,操作更加方便,效果更加突出。The present invention uses the newly developed RNA interference technology to directly reduce the accumulation of Stat3 gene mRNA from the transcriptional level, and directly lead to the reduction of the accumulation of Stat3 protein, thereby inhibiting the Stat3 signaling pathway. The present invention uses Stat3 antisense oligonucleotides, Stat3 dominant negative protein Stat3β, antagonists of Stat3 upstream specific receptors and receptor neutralizing antibodies, or naturally occurring proteins such as SOCS and PIAS to inhibit Stat3 signal transduction The technology and method of pathway therapy for tumors are more convenient to operate and more effective.
附图说明Description of drawings
图1为Stat3基因干扰质粒酶切鉴定电泳图(阳性结果与阴性对照);Fig. 1 is the electrophoresis diagram (positive result and negative control) of Stat3 gene interference plasmid digestion and identification;
图2为小干扰RNA抑制Stat3蛋白在293T细胞中的表达;Fig. 2 is that small interfering RNA suppresses the expression of Stat3 protein in 293T cells;
图3为RT-PCR检测4种Stat3干扰质粒抑制Stat3在293T细胞中mRNA的表达;Fig. 3 is that RT-PCR detects that 4 kinds of Stat3 interference plasmids suppress the expression of Stat3 mRNA in 293T cells;
图4为免疫染色实验小干扰RNA抑制Stat3蛋白在293T细胞中表达的剂量效应;Figure 4 is the dosage effect of small interfering RNA inhibiting the expression of Stat3 protein in 293T cells in immunostaining experiments;
图5为免疫印迹实验检测Stat3干扰质粒抑制Stat3在293T细胞中蛋白表达的剂量效应;Fig. 5 is immunoblotting experiment detection Stat3 interfering plasmid inhibits the dose effect of Stat3 protein expression in 293T cells;
图6为RT-PCR检测Stat3干扰质粒抑制Stat3在293T细胞中mRNA表达的剂量效应;Fig. 6 is RT-PCR detection Stat3 interfering plasmid suppresses the dose effect of Stat3 mRNA expression in 293T cells;
图7为siRNA茎环结构简单示意图;Figure 7 is a simple schematic diagram of the siRNA stem-loop structure;
图8为pBS/U6-Stat3-RNAi(2334)质粒图谱;Fig. 8 is pBS/U6-Stat3-RNAi (2334) plasmid map;
具体实施方式Detailed ways
首先合成siRNA干扰序列,再进行RNAi载体的处理,将处理好的载体与处理好的dsRNA连接,然后转化,挑选阳性克隆,提质粒,最后鉴定Stat3基因干扰质粒。First synthesize the siRNA interference sequence, then process the RNAi vector, connect the processed vector to the processed dsRNA, then transform, select positive clones, extract the plasmid, and finally identify the Stat3 gene interference plasmid.
在构建的干扰质粒的阳性克隆的筛选上我们采用方便可行的双酶切的阴性鉴定法。而对此质粒有效性的鉴定我们分别采用蛋白检测水平的免疫印记实验、mRNA检测水平的半定量RT-PCR、镜下结果直观的免疫染色方法,并且加入了剂量效应的比较。从而清楚地看出构建质粒对Stat3基因的抑制效果。In the screening of the positive clones of the constructed interfering plasmids, we adopted the convenient and feasible double-enzyme-digestion negative identification method. For the identification of the effectiveness of this plasmid, we used Western blotting at the level of protein detection, semi-quantitative RT-PCR at the level of mRNA detection, and immunostaining methods with intuitive results under the microscope, and added a dose-effect comparison. Therefore, it can be clearly seen that the inhibitory effect of the constructed plasmid on the Stat3 gene.
其具体方法如下:The specific method is as follows:
一.合成siRNA干扰序列:1. Synthetic siRNA interference sequence:
合成基本原则为:The basic principles of synthesis are:
1.从mRNA的AUG起始密码开始,寻找“AGN18TT”(其中N是任意碱基)结构的长度为22bp的序列;1. Starting from the AUG start codon of the mRNA, search for a sequence of 22 bp in length of the "AGN18TT" (wherein N is any base) structure;
A)避免在起始密码子或无义区域选择目的序列;A) Avoid selecting the target sequence at the start codon or nonsense region;
B)序列的GC含量为30%-60%;B) The GC content of the sequence is 30%-60%;
C)由于5’和3’端的非编码区(UTRs)有丰富的调控蛋白结构区域,这些UTR结合蛋白或者翻译起始复合物可能会影响siRNA核酸内切酶复合物结合mRNA从而影响siRNA的效果,因此设计时不针对5’和3’端的非编码区(UTRs);C) Since the 5' and 3' untranslated regions (UTRs) are rich in regulatory protein structural regions, these UTR binding proteins or translation initiation complexes may affect the binding of siRNA endonuclease complexes to mRNA and thus affect the effect of siRNA , so the design does not target the non-coding regions (UTRs) at the 5' and 3' ends;
D)将挑选的序列和相应的基因组数据库如人,小鼠,大鼠等进行比较,排除与其它编码序列/EST同源的序列,例如使用BLAST;D) Compare the selected sequences with corresponding genome databases such as human, mouse, rat, etc., and exclude sequences homologous to other coding sequences/ESTs, for example using BLAST;
F)选出合适的目标序列进行合成以找到最有效的siRNA序列;F) select the appropriate target sequence to synthesize to find the most effective siRNA sequence;
G)在正义链和反义链序列上不能连续出现3个或以上的T或A,否则可能导致siRNA转录的提前终止。G) Three or more Ts or As cannot appear consecutively on the sense strand and antisense strand sequence, otherwise it may lead to premature termination of siRNA transcription.
H)干扰序列末端核苷酸最好是C或T。H) The terminal nucleotide of the interfering sequence is preferably C or T.
I)干扰序列尽量避免在目的基因的首末端。I) Try to avoid the interference sequence at the beginning and end of the target gene.
2.克隆到siRNA表达载体中的DNA包括两个短的反向重复序列,中间由环序列分隔,组成发夹结构,由polIII启动子控制。随后再连上5-6个T作为RNA聚合酶III的转录终止子。2. The DNA cloned into the siRNA expression vector includes two short inverted repeat sequences separated by a loop sequence in the middle to form a hairpin structure controlled by the polIII promoter. Then connect 5-6 T as the transcription terminator of RNA polymerase III.
3.两个互补的寡核苷酸两端须带有限制性酶切位点(本实验选的是ApaI和EcoRI)。3. Both ends of the two complementary oligonucleotides must have restriction enzyme sites (ApaI and EcoRI were selected in this experiment).
4.在启动子下游的酶切位点下方紧连着一个C,使插入片断和启动子有一定空间间隔以确保转录的发生。siRNA目的序列的第一个碱基必须是G以确保RNA聚合酶转录。如果不以G开头,必须在紧连正义链的上游加上一个G。4. There is a C immediately below the enzyme cleavage site downstream of the promoter, so that there is a certain space between the inserted fragment and the promoter to ensure the occurrence of transcription. The first base of the siRNA target sequence must be G to ensure RNA polymerase transcription. If it does not start with a G, a G must be added immediately upstream of the justice chain.
5.siRNA插入片段中的环结构应当靠近寡核苷酸的中央。环的大小和核苷酸序列可以不同,但在其内包含一个独特的限制性酶切位点则利于检测带有siRNA插入片段的克隆。在比较了众多不同长度和序列的环后发现5’TTCAAGAGA3’序列最为有效,因此我们采用这一序列作为环结构序列。5. The loop structure in the siRNA insert should be close to the center of the oligonucleotide. The size and nucleotide sequence of the circle can vary, but inclusion of a unique restriction site within it facilitates detection of clones with siRNA inserts. After comparing many loops with different lengths and sequences, it was found that the 5'TTCAAGAGA3' sequence was the most effective, so we adopted this sequence as the loop structure sequence.
干扰序列确定后将得到的连接干扰序列正序片段和反序片断的连接子,并且为了及时中止干扰序列的转录,在干扰序列末端加上polyT作为中止子,利用pBS/U6多克隆位点中可以使用的内切酶,选择了ApaI和EcoRI作为插入位点,在寡核苷酸序列末端分别加上适当的与这两种内切酶匹配的碱基。After the interference sequence is determined, the linker connecting the positive sequence fragment and the reverse sequence fragment of the interference sequence will be obtained, and in order to stop the transcription of the interference sequence in time, polyT is added at the end of the interference sequence as a stop, and the pBS/U6 multiple cloning site is used As the endonucleases that can be used, ApaI and EcoRI are selected as the insertion sites, and appropriate bases matching the two endonucleases are respectively added at the end of the oligonucleotide sequence.
根据以上原则,按GenBank中小鼠的Stat3全长序列,选择了四条干扰序列。According to the above principles, four interference sequences were selected according to the full-length sequence of mouse Stat3 in GenBank.
针对Stat3设计的四对体内表达siRNA(短发卡RNA)的寡核苷酸序列为:The oligonucleotide sequences of four pairs of in vivo expression siRNA (short hairpin RNA) designed for Stat3 are:
157位点:157 position:
正义链chain of justice
5’>TCACATGCCACGTTGGTG CACCAACGTGGCATGTGACTTTTTTG<3’;5'>TCACATGCCACGTTGGTG CACCAACGTGGCATGTGACTTTTTG<3';
反义链antisense strand
5’>AATTCAAAAGTCACATGCCACGTTGGTG CACCAACGTGGCATGTGA<3’;5'>AATTCAAAAGTCACATGCCACGTTGGTG CACCAACGTGGCATGTGA<3';
1226位点:1226 position:
正义链chain of justice
5’>AGTTCAAGCACCTGACCC GGGTCAGGTGCTTGAACTCTTTTTTG<3’;5'>AGTTCAAGCACCTGACCC GGGTCAGGTGCTTGAACTCTTTTTTTG<3';
反义链antisense strand
5’>AATTCAAAAAAGAGTTCAAGCACCTGACCC GGGTCAGGTGCTTGAACT<3’;5'>AATTCAAAAAAGAGTTCAAGCACCTGACCC GGGTCAGGTGCTTGAACT<3';
1936位点:1936 site:
正义链chain of justice
5’>CAGCTGAACAACATGTCA TGACATGTTGTTCAGCTGCTTTTTTG<3’;5'>CAGCTGAACAACATGTCA TGACATGTTGTTCAGCTGCTTTTTTG<3';
反义链antisense strand
5’>AATTCAAAAAAGCAGCTGAACAACATGTCA TGACATGTTGTTCAGCTG<3’;5'>AATTCAAAAAAGCAGCTGAACAACATGTCA TGACATGTTGTTCAGCTG<3';
2334位点:2334 site:
正义链chain of justice
5’>AAGCTGCAGAGACGTGAC GTCACGTCTCTGCAGCTTCTTTTTTG<3’;5'>AAGCTGCAGAGACGTGAC GTCACGTCTCTGCAGCTTCTTTTTTG<3';
反义链antisense strand
5’>AATTCAAAAAAGAAGCTGCAGAGACGTGAC GTCACGTCTCTGCAGCTT<3’;5'>AATTCAAAAAAGAAGCTGCAGAGACGTGAC GTCACGTCTCTGCAGCTT<3';
方框中序列为环结构序列。The sequence in the box is a loop structure sequence.
干扰序列的处理:Interference sequence processing:
4条干扰序列由上海生工合成,均为2OD量(2管,1OD/管,1OD=33μg),将合成好的每条寡核苷酸sense和antisense均配成终浓度为250umol/L的溶液,然后将正义链和反义链各取100μl按1∶1比例两两混合均匀,置于盛有水的烧杯中煮沸10分钟,然后于室温自然冷却,使寡核苷酸链退火,便可形成相应的双链DNA。即得到pBS/U6载体中的插入片断siRNA。The 4 interference sequences were synthesized by Shanghai Sangong, all of which were 2OD (2 tubes, 1OD/tube, 1OD=33μg). Each synthesized oligonucleotide sense and antisense was made into a final concentration of 250umol/L solution, then take 100 μl each of the sense strand and the antisense strand and mix them evenly in a ratio of 1:1, put them in a beaker filled with water and boil for 10 minutes, then cool naturally at room temperature to anneal the oligonucleotide strands, and then The corresponding double-stranded DNA can be formed. That is, the insert fragment siRNA in the pBS/U6 vector was obtained.
操作时可直接将siRNA片段加入酶联反应体系中。这种结构可以在细胞中产生siRNA,其体内表达的siRNA如图7所示。During operation, siRNA fragments can be directly added to the enzyme-linked reaction system. This structure can produce siRNA in cells, and the siRNA expressed in vivo is shown in FIG. 7 .
二.RNAi载体的处理2. Treatment of RNAi vector
因为U6启动子驱动的目的基因必须以鸟嘌呤开头,而ApaI内切酶消化后产物3’末端恰好剩余一个鸟嘌呤,只需将互补链的5’粘末端切除,然后通过平端连接插入目标基因的干扰序列即可构建目标基因的干扰质粒,因此所用的pBS/U6载体是以pBlueScript为基础插入U6启动子和适当的多克隆位点构建而成的。所使用的pBS/U6载体为Sui G et al.A DNA vector-based RNAi technology tosuppress gene expression in mammalian cells.Proc Natl Acad Sci USA 2002;99:5515-5520.中记载的载体。Because the target gene driven by the U6 promoter must start with guanine, and there is exactly one guanine at the 3' end of the product after digestion with ApaI endonuclease, just cut off the 5' sticky end of the complementary strand, and then insert the target gene through blunt-end ligation The interfering sequence of the target gene can be used to construct the interfering plasmid of the target gene, so the pBS/U6 vector used is constructed by inserting the U6 promoter and an appropriate multiple cloning site based on pBlueScript. The pBS/U6 vector used is the vector described in Sui G et al. A DNA vector-based RNAi technology to suppress gene expression in mammalian cells. Proc Natl Acad Sci USA 2002; 99: 5515-5520.
RNAi载体的处理过程如下:The RNAi vectors are processed as follows:
1、取pBS/U6载体2μg,用ApaI内切酶室温消化过夜,确定酶切完全后,再切Klenow酶。酶切体系如下:1. Take 2 μg of pBS/U6 vector, digest with ApaI endonuclease overnight at room temperature, and cut Klenow enzyme after confirming that the enzyme digestion is complete. The enzyme digestion system is as follows:
合20μl20μl
2、经DNA回收后,取适量ApaI酶切处理后pBS/U6,组建下面Klenow酶切体系:2. After DNA recovery, take an appropriate amount of pBS/U6 after digestion with ApaI, and set up the following Klenow digestion system:
合20μl20μl
室温消化30分钟,确定酶切完全即可,将反应体系置于75摄氏度水浴中终止反应,然后将热激后的反应体系放在冰上退火。Digest at room temperature for 30 minutes to confirm that the digestion is complete. Place the reaction system in a water bath at 75 degrees Celsius to terminate the reaction, and then anneal the heat-shocked reaction system on ice.
3、直接进行溶液体系DNA回收或胶回收3. Directly carry out solution system DNA recovery or gel recovery
溶液回收用的是NucleoTrap Gel Extraction Kit(从BD Biosciences购买),按照厂家提供的实验方法回收DNA。NucleoTrap Gel Extraction Kit (purchased from BD Biosciences) was used for solution recovery, and DNA was recovered according to the experimental method provided by the manufacturer.
4、将回收后DNA片段直接进行下游选取的内切酶进行酶切,本实验选择EcoRI酶,确定酶切完全即可,酶切体系为:4. The recovered DNA fragments are directly digested with the endonuclease selected downstream. In this experiment, EcoRI enzyme is selected to ensure that the enzyme digestion is complete. The enzyme digestion system is:
37摄氏度水浴,2小时以上37 degrees Celsius water bath, more than 2 hours
5、酶切产物再经过DNA电泳回收纯化5. The digested product is recovered and purified by DNA electrophoresis
酶切完后,先取少量(如2μl)稀释后跑DNA电泳,以判断酶切是否完全。如还不完全则可延长酶切时间或增加酶量,如完全即可行下步。将酶切体系全部跑1%DNA胶,110V,20-30分钟即可。紫外灯下看条带。凝胶成像仪中观察条带大小是否正确,酶切完全与否。然后用刀切下DNA集中那块。预先称量一干净EP管,再称量加入切下的凝胶后重量,得到DNA胶的重量。After digestion, take a small amount (such as 2 μl) to dilute and run DNA electrophoresis to judge whether the digestion is complete. If it is not complete, you can extend the digestion time or increase the amount of enzyme, if it is complete, you can go to the next step. Run all enzyme digestion systems on 1% DNA gel, 110V, 20-30 minutes. Strips were seen under UV light. Observe whether the band size is correct and whether the enzyme digestion is complete or not in a gel imager. Then use a knife to cut out the piece where the DNA is concentrated. Weigh a clean EP tube in advance, and then weigh the weight after adding the cut gel to obtain the weight of the DNA gel.
接着按照通常的实验方法回收凝胶中的DNA。Then recover the DNA in the gel according to the usual experimental method.
至此pBS/U6载体处理完毕。So far the pBS/U6 vector has been processed.
三.将处理好的pBS/U6载体与处理好的dsDNA连接3. Ligate the processed pBS/U6 vector with the processed dsDNA
处理后的pBS/U6载体与dsDNA连接的原则:载体与dsDNA质量比为1∶20到1∶40。The principle of connecting the treated pBS/U6 vector to dsDNA: the mass ratio of vector to dsDNA is 1:20 to 1:40.
使用Takara Biotech DNA Ligation Kit Ver.2试剂盒(从Takara公司购买)进行快速连接30分钟以上,使连接充分。Use the Takara Biotech DNA Ligation Kit Ver.2 kit (purchased from Takara) for rapid connection for more than 30 minutes to make the connection sufficient.
可16摄氏度过夜放置。It can be left overnight at 16°C.
四.转化,挑选阳性克隆,提质粒:4. Transformation, selection of positive clones, and extraction of plasmids:
将放置过夜连接的反应液10μl用通常的方法进行全部转化。完成后将涂好的平板置于37摄氏度孵箱内16-20小时。平板应先正置,待菌液干后再倒置平板。16-20小时后观察平板,见有菌落生长,由于是连接产物转化,所以菌落不如质粒转化生产的多。10 µl of the reaction solution left overnight for the ligation was used for all transformations by the usual method. After completion, place the coated plate in a 37°C incubator for 16-20 hours. The plate should be placed upright first, and the plate should be inverted after the bacterial solution is dry. After 16-20 hours, observe the plate, and there are colonies growing. Since the transformation of the ligation product is performed, the number of colonies is not as large as that produced by the transformation of the plasmid.
挑单克隆,摇菌,37摄氏度,振摇,9-12小时,取出LB管,抽提质粒:使用北京博大泰克生物基因技术公司的质粒小样快速提取试剂盒,按照厂家提供的实验方法提取质粒,其质粒的质粒图谱见图8。(以第四个序列构建而成的质粒为例)Pick a single clone, shake the bacteria, shake at 37 degrees Celsius, 9-12 hours, take out the LB tube, and extract the plasmid: use the plasmid small sample rapid extraction kit of Beijing Broadtech Biogene Technology Co., Ltd. to extract the plasmid according to the experimental method provided by the manufacturer , the plasmid map of its plasmid is shown in Figure 8. (Take the plasmid constructed from the fourth sequence as an example)
五.Stat3基因干扰质粒的鉴定Five. Identification of Stat3 gene interference plasmid
在构建的干扰质粒的阳性克隆的筛选上我们采用的是双酶切的阴性鉴定法。在干扰序列插入时选取的内切酶是ApaI和EcoRI,序列插入后将取代多克隆位点中ApaI和EcoRI之间的内切酶识别位点,分别是XhoI,SalI,HindIII和EcoRV。根据pBS/U6质粒图谱可知,在U6启动子前面有三个内切酶识别位点,分别是KpnI,XbaI和BamH I。所以任意选取一个U6启动子前面的内切酶和其后可以被插入序列取代的内切酶进行双酶切,干扰载体都将被单酶切,得到线性化干扰载体,而如果选用干扰序列不能取代的内切酶和启动子前面的内切酶进行双酶切,则应能切出连同U6启动子和干扰序列一起的一个片断,大小应比U6启动子略大。若没有干扰序列插入,则酶切结果应分别出现约300bp的U6启动子和约3kb左右的pBlueScript骨架。In the screening of the positive clones of the constructed interfering plasmids, we used the negative identification method of double enzyme digestion. The endonucleases selected during interfering sequence insertion are ApaI and EcoRI. After the sequence is inserted, the endonuclease recognition sites between ApaI and EcoRI in the multiple cloning site will be replaced, which are XhoI, SalI, HindIII and EcoRV respectively. According to the pBS/U6 plasmid map, there are three endonuclease recognition sites in front of the U6 promoter, namely KpnI, XbaI and BamH I. Therefore, arbitrarily select an endonuclease in front of a U6 promoter and an endonuclease that can be replaced by an insert sequence to perform double digestion, and the interference vector will be single-digested to obtain a linear interference vector, and if the interference sequence is selected, it cannot be replaced. The endonuclease in front of the promoter and the endonuclease in front of the promoter should be able to cut out a fragment together with the U6 promoter and the interference sequence, and the size should be slightly larger than the U6 promoter. If there is no interfering sequence inserted, the result of enzyme digestion should show about 300bp of U6 promoter and about 3kb of pBlueScript backbone.
用了KpnI和EcoRV及KpnI和XhoI。鉴定结果如图1所示。经过重复筛选,我们得到了4个阳性的干扰质粒。图1中1-marker;2,3-pBS/U6空载体经双酶切结果(作为阴性对照);4,5-质粒pBS/U6-Stat3-RNAi经双酶切的结果(阳性结果)。其中第2,4两道为KpnI和EcoRV双酶切,第3,5道为KpnI和XhoI双酶切。在干扰序列插入时选取的内切酶是ApaI和EcoRI,序列插入后将取代多克隆位点中ApaI和EcoRI之间的内切酶识别位点,分别是XhoI,SalI,HindIII和EcoRV。根据pBS/U6质粒图谱可知,在U6启动子前面有三个内切酶识别位点,分别是KpnI,XbaI和BamHI。所以任意选取一个U6启动子前面的内切酶和其后可以被插入序列取代的内切酶进行双酶切,干扰载体都将被单酶切,得到线性化干扰载体,而如果选用干扰序列不能取代的内切酶和启动子前面的内切酶进行双酶切,则应能切出连同U6启动子和干扰序列一起的一个片断,大小应比U6启动子略大。若没有干扰序列插入,则酶切结果应分别出现约300bp的U6启动子和约3kb左右的pBlueScript骨架。由此我们选用KpnI和EcoRV及KpnI和XhoI来鉴定干扰质粒的阳性克隆。KpnI and EcoRV and KpnI and XhoI were used. The identification results are shown in Figure 1. After repeated screening, we got 4 positive interfering plasmids. In Figure 1, 1-marker; 2,3-pBS/U6 empty vector was digested with double enzymes (as a negative control); 4,5-plasmid pBS/U6-Stat3-RNAi was digested with double enzymes (positive result). The 2nd and 4th lanes are KpnI and EcoRV double enzyme digestion, and the 3rd and 5th lanes are KpnI and XhoI double enzyme digestion. The endonucleases selected during interfering sequence insertion are ApaI and EcoRI. After the sequence is inserted, the endonuclease recognition sites between ApaI and EcoRI in the multiple cloning site will be replaced, which are XhoI, SalI, HindIII and EcoRV respectively. According to the pBS/U6 plasmid map, there are three endonuclease recognition sites in front of the U6 promoter, namely KpnI, XbaI and BamHI. Therefore, arbitrarily select an endonuclease in front of a U6 promoter and an endonuclease that can be replaced by an insert sequence to perform double digestion, and the interference vector will be single-digested to obtain a linear interference vector, and if the interference sequence is selected, it cannot be replaced. The endonuclease in front of the promoter and the endonuclease in front of the promoter should be able to cut out a fragment together with the U6 promoter and the interference sequence, and the size should be slightly larger than the U6 promoter. If there is no interfering sequence inserted, the result of enzyme digestion should show about 300bp of U6 promoter and about 3kb of pBlueScript backbone. Therefore we use KpnI and EcoRV and KpnI and XhoI to identify the positive clones of the interference plasmid.
pBS/U6与insert成功连接后使EcoRV酶切位点消失,故KpnI和EcoRV双酶切不能得到大小2条片段,而pBS/U6有EcoRV位点故双酶切后可得到大小2条带。XhoI酶切位点仍然存在,用KpnI和XhoI双酶切pBS/U6可得约3kb大片段与350kbU6启动子小片段。insert成功连接后使EcoRV酶切位点消失,故KpnI和EcoRV双酶切不能得到大小2条片段,而pBS/U6有EcoRV位点故双酶切后可得到大小2条带。因此insert成功地克隆进pBS/U6载体得到了pBS/U6-STAT3-siRNA。After successful ligation of pBS/U6 and insert, the EcoRV restriction site disappears, so KpnI and EcoRV double digestion cannot obtain 2 fragments, but pBS/U6 has an EcoRV site, so double digestion can obtain 2 fragments. The XhoI restriction site still exists, and pBS/U6 can be double digested with KpnI and XhoI to obtain a large fragment of about 3kb and a small fragment of U6 promoter of 350kb. After the insert is successfully connected, the EcoRV restriction site disappears, so KpnI and EcoRV double digestion cannot obtain fragments of 2 sizes, but pBS/U6 has an EcoRV site, so double digestion can obtain 2 fragments of size. Therefore, the insert was successfully cloned into the pBS/U6 vector to obtain pBS/U6-STAT3-siRNA.
将构建好的质粒转化DH5α菌株,用质粒小量提取试剂盒(购自QIAGEN公司)提取,可不用再纯化。此质粒可直接用于转染等实验。Transform the constructed plasmid into the DH5α strain, and extract it with a plasmid mini-extraction kit (purchased from QIAGEN), without further purification. This plasmid can be directly used in experiments such as transfection.
六.pBS/U6-Stat3-RNAi质粒的有效性的鉴定:6. Identification of the effectiveness of the pBS/U6-Stat3-RNAi plasmid:
将构建的质粒转染了人胚肾上皮细胞及小鼠黑色素瘤细胞,进行实验。实验部分,包括免疫印记实验,免疫染色实验,RT-PCR实验等。The constructed plasmid was transfected into human embryonic kidney epithelial cells and mouse melanoma cells for experiments. Experimental part, including immunoblotting experiment, immunostaining experiment, RT-PCR experiment, etc.
1、pBS/U6-Stat3-RNAi特异性地抑制细胞内小鼠Stat3基因蛋白的表达1. pBS/U6-Stat3-RNAi specifically inhibits the expression of mouse Stat3 gene protein in cells
将mStat3-Flag表达质粒和4种pBS/U6-Stat3-RNAi质粒共同转染293T细胞,通过免疫印迹分析Stat3在293T细胞中的表达情况,以研究构建的干扰质粒对小鼠Stat3表达的影响。参见图2。图2中1-Wild Type 293T;2-pBS/U6;3,4,5,6一依次为pBS/U6-Stat3-RNAi-I、II、III、IV。共转染了干扰质粒pBS/U6-Stat3-RNAi后的细胞内Stat3蛋白表达量有不同程度地降低,将上排lane3、4、5、6与2比较,说明pBS/U6-Stat3-RNAi能不同程度地抑制细胞内Stat3基因的表达进而使蛋白合成量下降;其中靶向2334-2351位点的干扰质粒效果最好,几乎把小鼠Stat3的表达降到了最低水平(上排lane6与lane1比较),因为293T细胞中含有内源性的人源Stat3,而pBS/U6-Stat3-RNAi干扰质粒是小鼠Stat3序列特异的,不能干扰人源Stat3的表达,因此靶向2334-2351位点的干扰质粒几乎把小鼠Stat3的表达全部抑制住了。同时GFP质粒共同转染后,可以看到pBS/U6-Stat3-RNAi只抑制Stat3的表达,对EGFP蛋白的表达没有任何影响(下排lane2、3、4、5、6相互比较),这显示了Stat3干扰质粒只特异性的抑制Stat3蛋白的表达而对其它基因的表达没有任何影响,说明DNA介导的RNAi具有高度的专一性。中排β-actin的表达量显示了我们每道的上样量基本是一致的。The mStat3-Flag expression plasmid and four pBS/U6-Stat3-RNAi plasmids were co-transfected into 293T cells, and the expression of Stat3 in 293T cells was analyzed by Western blotting to study the effect of the constructed interference plasmid on the expression of mouse Stat3. See Figure 2. In Figure 2, 1-Wild Type 293T; 2-pBS/U6; 3, 4, 5, and 6 are pBS/U6-Stat3-RNAi-I, II, III, and IV in sequence. After co-transfection with the interference plasmid pBS/U6-Stat3-RNAi, the expression of Stat3 protein in the cells decreased to varying degrees. Comparing
2、采用RT-PCR的技术半定量地检测了小鼠Stat3基因在293T细胞中mRNA的水平,以进一步明确共转染干扰质粒后小鼠Stat3在293T细胞中蛋白表达减少的原因。在转染质粒36小时后,收取各组的293T细胞,提取细胞总RNA,以此为模板,采用小鼠Stat3基因特异性引物进行了PCR扩增,同时作为细胞总RNA取样量的对照,平行的进行了β-actin基因的扩增。参见图3。图3中M-marker;Stat3组1-Wild Type 293T;2-pBS/U6;3,4,5,6-依次为pBS/U6-Stat3-RNAi-I,II,III,IV;β-actin组-每道上样量一致。共转染了干扰质粒的小鼠Stat3基因在293T细胞中mRNA的表达量明显比共转染了空载体质粒的实验组降低了(lane3、4、5、6与2比较),尤其靶向2334-2351位点的干扰质粒效果最好,这与免疫印记实验的结果是一致的;另外,尽管第一道所用的野生型293T细胞总RNA模板中有人源Stat3基因的存在,但由于所设计的引物是小鼠Stat3基因特异性的,所以也不能扩增出任何条带来。同样的,下排β-actin条带显示RT-PCR扩增时的总RNA的取样量是基本一致的。2. Using RT-PCR to semi-quantitatively detect the mRNA level of mouse Stat3 gene in 293T cells, in order to further clarify the reason for the decrease of mouse Stat3 protein expression in 293T cells after co-transfection of interference plasmids. 36 hours after the transfection of the plasmid, the 293T cells in each group were harvested, and the total RNA of the cells was extracted. Using this as a template, PCR amplification was carried out using specific primers for the mouse Stat3 gene. At the same time, it was used as a control for the sampling amount of the total RNA of the cells. The β-actin gene was amplified. See Figure 3. M-marker in Figure 3; Stat3 group 1-Wild Type 293T; 2-pBS/U6; 3, 4, 5, 6- pBS/U6-Stat3-RNAi-I, II, III, IV; β-actin Group - The same amount of sample is loaded on each channel. The expression of Stat3 gene mRNA in 293T cells of mice co-transfected with interference plasmids was significantly lower than that of the experimental group co-transfected with empty vector plasmids (lane3, 4, 5, 6 compared with 2), especially targeting 2334 The effect of the interference plasmid at the -2351 site is the best, which is consistent with the results of the western blotting experiment; in addition, although the human Stat3 gene exists in the wild-type 293T cell total RNA template used in the first pass, due to the designed The primers are specific to the mouse Stat3 gene, so no bands can be amplified. Similarly, the lower row of β-actin bands shows that the sampling amount of total RNA during RT-PCR amplification is basically the same.
3、pBS/U6-Stat3-RNAi抑制细胞内Stat3基因表达的剂量效应3. The dosage effect of pBS/U6-Stat3-RNAi inhibiting the expression of Stat3 gene in cells
(1)免疫染色(Immunostainning)可以更直观的观察pBS/U6-Stat3-RNAi对Stat3基因表达的抑制作用。选择效果最好的靶向2334-2351位点的干扰质粒进一步检测对小鼠Stat3基因在293T细胞中的抑制作用。同时转染了不同量的干扰质粒观察这种抑制作用是否具有剂量效应。参见图4。图4中左边一列(a,d,g,j,m,p)显示了共转染的GFP的表达;中间一列(b,e,h,k,n,q)显示了免疫染色Stat3基因表达的结果;右边一列(c,f,i,l,o,r)是左边列和中间列Merge的结果。黄光表示了GFP和Stat3共同表达的情况。转染Stat3干扰质粒与转染空载体pBS/U6以及GFP特异性干扰质粒的细胞相比,Stat3蛋白的表达显著的降低(图4中h与b,e相比),而且随着干扰质粒转染量的增加,Stat3的表达越来越低(从图4-h到q),而GFP的表达几乎与对照组是相等的(图4-g、j、m、p与a相比)。同时,GFP干扰质粒也能高效特异的抑制GFP基因的表达(图4-d与a相比),而对Stat3蛋白没有没有任何影响(图4-e与b相比)。说明靶向小鼠Stat3的干扰质粒可以特异性的抑制小鼠Stat3的表达,而且呈现明显的剂量效应。免疫染色结果直观显示了所构建的pBS/U6-Stat3-RNAi能够在细胞水平高效且特异性地抑制Stat3蛋白的表达。(1) Immunostaining can more intuitively observe the inhibitory effect of pBS/U6-Stat3-RNAi on Stat3 gene expression. Select the interference plasmid targeting the 2334-2351 site with the best effect to further test the inhibitory effect on mouse Stat3 gene in 293T cells. At the same time, different amounts of interfering plasmids were transfected to observe whether the inhibitory effect had a dosage effect. See Figure 4. The left column (a, d, g, j, m, p) in Figure 4 shows the expression of co-transfected GFP; the middle column (b, e, h, k, n, q) shows the immunostained Stat3 gene expression The result; the right column (c, f, i, l, o, r) is the result of the Merge of the left column and the middle column. Yellow light indicates the co-expression of GFP and Stat3. Compared with cells transfected with empty vector pBS/U6 and GFP-specific interference plasmid transfected with Stat3 interference plasmid, the expression of Stat3 protein was significantly reduced (compared with h in Figure 4 and b, e), and with the interference plasmid transfection As the amount of staining increased, the expression of Stat3 became lower and lower (from Figure 4-h to q), while the expression of GFP was almost equal to that of the control group (Figure 4-g, j, m, p compared with a). At the same time, the GFP interference plasmid can also efficiently and specifically inhibit the expression of the GFP gene (compared with Figure 4-d and a), but has no effect on Stat3 protein (compared with Figure 4-e and b). It shows that the interference plasmid targeting mouse Stat3 can specifically inhibit the expression of mouse Stat3, and presents an obvious dose effect. Immunostaining results visually showed that the constructed pBS/U6-Stat3-RNAi could efficiently and specifically inhibit the expression of Stat3 protein at the cellular level.
(2)免疫印迹实验检测不同剂量的干扰质粒对小鼠Stat3表达的影响。参见图5。图5中1-GFPi;2-pBS/U6;3,4,5,6-pBS/U6-Stat3-RNAi-IV的dose效应同免疫染色的结果相一致,随着共转染干状质粒的量的增加,Stat3的表达量相比对照组降低了,并且呈现明显的剂量效应(图5上排中第3道到第6道),同时pBS/U6-Stat3-RNAi对EGFP蛋白的表达无任何抑制作用(图5下排中第3道到第6道与第2道比)。共转染了GFp干扰质粒的细胞GFP的表达受到抑制(图5下排中第1道与第2道比),而Stat3蛋白没有受到任何影响(图5上排中第1道与第2道相比)。同样的,中排β-actin的表达量显示了我们每道的上样量基本是一致的。(2) The effect of different doses of interfering plasmids on the expression of Stat3 in mice was detected by immunoblotting. See Figure 5. In Figure 5, the dose effect of 1-GFPi; 2-pBS/U6; 3,4,5,6-pBS/U6-Stat3-RNAi-IV is consistent with the results of immunostaining, and the co-transfection of dry plasmid Compared with the control group, the expression of Stat3 decreased, and there was an obvious dose effect (3rd to 6th lane in the upper row of Figure 5), while pBS/U6-Stat3-RNAi had no effect on the expression of EGFP protein. Any inhibitory effect (
(3)采用半定量RT-PCR的实验技术,进一步检测不同剂量的干扰质粒对小鼠Stat3在293T细胞中mRNA表达的影响。把同一实验组总RNA模板RT-PCR扩增出的Stat3与βactin基因产物各自等量混到一起跑琼脂糖凝胶电泳,参见图6。图6中1-pBS/U6;2-U6-GFPi;3-U6-Stat3-RNAi-IV(0.5ug);4-U6-Stat3-RNAi-IV(1.0ug);5-U6-Stat3-RNAi-IV(2.0ug);6-U6-Stat3-RNAi-IV(3.0ug)。同免疫染色以及免疫印迹实验的结果相一致,随着共转染干扰质粒的量的增加,Stat3的mRNA表达量相比对照组降低了,并且呈现明显的剂量效应(图6上排中第3道到第6道),下排β-actin的条带显示RT-PCR扩增时的总RNA的取样量是基本一致的。(3) Using the experimental technique of semi-quantitative RT-PCR to further detect the effect of different doses of interfering plasmids on the mRNA expression of mouse Stat3 in 293T cells. Mix equal amounts of Stat3 and βactin gene products amplified by RT-PCR from the total RNA template of the same experimental group and run agarose gel electrophoresis, see Figure 6. 1-pBS/U6 in Figure 6; 2-U6-GFPi; 3-U6-Stat3-RNAi-IV (0.5ug); 4-U6-Stat3-RNAi-IV (1.0ug); 5-U6-Stat3-RNAi - IV (2.0 ug); 6-U6-Stat3-RNAi-IV (3.0 ug). Consistent with the results of immunostaining and immunoblotting experiments, with the increase of the amount of co-transfection interference plasmid, the mRNA expression of Stat3 decreased compared with the control group, and showed a significant dose effect (the third in the upper row of Figure 6 Lane to Lane 6), the band of β-actin in the lower row shows that the sampling amount of total RNA during RT-PCR amplification is basically the same.
本发明制备的pBS/U6-Stat3-RNAi质粒可用于抑制肿瘤生长因子的表达,抑制动物模型的肿瘤生长,并为应用于快速鉴别新的肿瘤靶目标提供了理论基础,可以应用在治疗肿瘤的临床实验和制备抗肿瘤药物中。The pBS/U6-Stat3-RNAi plasmid prepared by the present invention can be used to inhibit the expression of tumor growth factors, inhibit the growth of tumors in animal models, and provide a theoretical basis for the rapid identification of new tumor targets, and can be used in the treatment of tumors Clinical trials and preparation of antitumor drugs.
序列表sequence listing
<110>中国人民解放军第三军医大学<110> The Third Military Medical University of the Chinese People's Liberation Army
<120>抑制Stat3基因表达的siRNA及其制备方法<120> siRNA inhibiting Stat3 gene expression and preparation method thereof
<130><130>
<160>3303<160>3303
<170>BioEdit version 7.0.0<170>BioEdit version 7.0.0
<210>1<210>1
<211>3303<211>3303
<212>DNA<212>DNA
<213>人工序列<213> Artificial sequence
<400>1<400>1
ctaaattgtaagcgttaatattttgttaaaattcgcgttaaatttttgttaaatcagctc 60ctaaattgtaagcgttaatattttgttaaaattcgcgttaaatttttgttaaatcagctc 60
attttttaaccaataggccgaaatcggcaaaatcccttataaatcaaaagaatagaccga 120attttttaaccaataggccgaaatcggcaaaatcccttataaatcaaaagaatagaccga 120
gatagggttgagtgttgttccagtttggaacaagagtccactattaaagaacgtggactc 180gatagggttgagtgttgttccagtttggaacaagagtccactattaaagaacgtggactc 180
caacgtcaaagggcgaaaaaccgtctatcagggcgatggcccactacgtgaaccatcacc 240caacgtcaaagggcgaaaaaccgtctatcagggcgatggcccactacgtgaaccatcacc 240
ctaatcaagttttttggggtcgaggtgccgtaaagcactaaatcggaaccctaaagggag 300ctaatcaagttttttggggtcgaggtgccgtaaagcactaaatcggaaccctaaagggag 300
cccccgatttagagcttgacggggaaagccggcgaacgtggcgagaaaggaagggaagaa 360cccccgatttagagcttgacggggaaagccggcgaacgtggcgagaaaggaagggaagaa 360
agcgaaaggagcgggcgctagggcgctggcaagtgtagcggtcacgctgcgcgtaaccac 420agcgaaaggagcgggcgctagggcgctggcaagtgtagcggtcacgctgcgcgtaaccac 420
cacacccgccgcgcttaatgcgccgctacagggcgcgtcccattcgccattcaggctgcg 480cacacccgccgcgcttaatgcgccgctacagggcgcgtcccattcgccattcaggctgcg 480
caactgttgggaagggcgatcggtgcgggcctcttcgctattacgccagctggcgaaagg 540caactgttgggaagggcgatcggtgcgggcctcttcgctattacgccagctggcgaaagg 540
gggatgtgctgcaaggcgattaagttgggtaacgccagggttttcccagtcacgacgttg 600gggatgtgctgcaaggcgattaagttgggtaacgccagggttttcccagtcacgacgttg 600
taaaacgacggccagtgagcgcgcgtaatacgactcactatagggcgaattgggtacccg 660taaaacgacggccagtgagcgcgcgtaatacgactcactataggggcgaattgggtacccg 660
ctctagaactagtggatccgacgccgccatctctaggcccgcgccggccccctcgcacag 720ctctagaactagtggatccgacgccgccatctctaggcccgcgccggccccctcgcacag 720
acttgtgggagaagctcggctactcccctgccccggttaatttgcatataatatttccta 780acttgtgggagaagctcggctactcccctgccccggttaatttgcatataatatttccta 780
gtaactatagaggcttaatgtgcgataaaagacagataatctgttctttttaatactagc 840gtaactatagaggcttaatgtgcgataaaagacagataatctgttctttttaatactagc 840
tacattttacatgataggcttggatttctataagagatacaaatactaaattattatttt 900tacattttacatgataggcttggatttctataagagatacaaatactaaattattatttt 900
aaaaaacagcacaaaaggaaactcaccctaactgtaaagtaattgtgtgttttgagacta 960aaaaaacagcacaaaaggaaactcaccctaactgtaaagtaattgtgtgttttgagacta 960
taaatatcccttggagaaaagccttgtttgtcacatgccacgttggtgttcaagagacac 1020taaatatcccttggagaaaagccttgtttgtcacatgccacgttggtgttcaagagacac 1020
caacgtggcatgtgacttttttgaattcctgcagcccgggggatccactagttctagagc 1080caacgtggcatgtgacttttttgaattcctgcagcccgggggatccactagttctagagc 1080
ggccgccaccgcggtggagctccagcttttgttccctttagtgagggttaattgcgcgct 1140ggccgccaccgcggtggagctccagcttttgttccctttagtgagggttaattgcgcgct 1140
tggcgtaatcatggtcatagctgtttcctgtgtgaaattgttatccgctcacaattccac 1200tggcgtaatcatggtcatagctgtttcctgtgtgaaattgttatccgctcacaattccac 1200
acaacatacgagccggaagcataaagtgtaaagcctggggtgcctaatgagtgagctaac 1260acaacatacgagccggaagcataaagtgtaaagcctggggtgcctaatgagtgagctaac 1260
tcacattaattgcgttgcgctcactgcccgctttccagtcgggaaacctgtcgtgccagc 1320tcacattaattgcgttgcgctcactgcccgctttccagtcgggaaacctgtcgtgccagc 1320
tgcattaatgaatcggccaacgcgcggggagaggcggtttgcgtattgggcgctcttccg 1380tgcattaatgaatcggccaacgcgcggggagaggcggtttgcgtattgggcgctcttccg 1380
cttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcgagcggtatcagctc 1440cttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcgagcggtatcagctc 1440
actcaaaggcggtaatacggttatccacagaatcaggggataacgcaggaaagaacatgt 1500actcaaaggcggtaatacggttatccacagaatcaggggataacgcaggaaagaacatgt 1500
gagcaaaaggccagcaaaaggccaggaaccgtaaaaaggccgcgttgctggcgtttttcc 1560gagcaaaaggccagcaaaaggccaggaaccgtaaaaaggccgcgttgctggcgtttttcc 1560
ataggctccgcccccctgacgagcatcacaaaaatcgacgctcaagtcagaggtggcgaa 1620ataggctccgcccccctgacgagcatcacaaaaatcgacgctcaagtcagaggtggcgaa 1620
acccgacaggactataaagataccaggcgtttccccctggaagctccctcgtgcgctctc 1680acccgacaggactataaagataccaggcgtttccccctggaagctccctcgtgcgctctc 1680
ctgttccgaccctgccgcttaccggatacctgtccgcctttctcccttcgggaagcgtgg 1740ctgttccgaccctgccgcttaccggatacctgtccgcctttctcccttcgggaagcgtgg 1740
cgctttctcatagctcacgctgtaggtatctcagttcggtgtaggtcgttcgctccaagc 1800cgctttctcatagctcacgctgtaggtatctcagttcggtgtaggtcgttcgctccaagc 1800
tgggctgtgtgcacgaaccccccgttcagcccgaccgctgcgccttatccggtaactatc 1860tgggctgtgtgcacgaacccccccgttcagcccgaccgctgcgccttatccggtaactatc 1860
gtcttgagtccaacccggtaagacacgacttatcgccactggcagcagccactggtaaca 1920gtcttgagtccaacccggtaagacacgacttatcgccactggcagcagccactggtaaca 1920
ggattagcagagcgaggtatgtaggcggtgctacagagttcttgaagtggtggcctaact 1980ggattagcagagcgaggtatgtaggcggtgctacagagttcttgaagtggtggcctaact 1980
acggctacactagaaggacagtatttggtatctgcgctctgctgaagccagttaccttcg 2040acggctacactagaaggacagtatttggtatctgcgctctgctgaagccagttaccttcg 2040
gaaaaagagttggtagctcttgatccggcaaacaaaccaccgctggtagcggtggttttt 2100gaaaaagagttggtagctcttgatccggcaaacaaaccaccgctggtagcggtggttttt 2100
ttgtttgcaagcagcagattacgcgcagaaaaaaaggatctcaagaagatcctttgatct 2160ttgtttgcaagcagcagattacgcgcagaaaaaaaggatctcaagaagatcctttgatct 2160
tttctacggggtctgacgctcagtggaacgaaaactcacgttaagggattttggtcatga 2220tttctacggggtctgacgctcagtggaacgaaaactcacgttaagggattttggtcatga 2220
gattatcaaaaaggatcttcacctagatccttttaaattaaaaatgaagttttaaatcaa 2280gattatcaaaaaggatcttcacctagatccttttaaattaaaaatgaagttttaaatcaa 2280
tctaaagtatatatgagtaaacttggtctgacagttaccaatgcttaatcagtgaggcac 2340tctaaagtatatatgagtaaacttggtctgacagttaccaatgcttaatcagtgaggcac 2340
ctatctcagcgatctgtctatttcgttcatccatagttgcctgactccccgtcgtgtaga 2400ctatctcagcgatctgtctatttcgttcatccatagttgcctgactccccgtcgtgtaga 2400
taactacgatacgggagggcttaccatctggccccagtgctgcaatgataccgcgagacc 2460taactacgatacgggagggcttaccatctggccccagtgctgcaatgataccgcgagacc 2460
cacgctcaccggctccagatttatcagcaataaaccagccagccggaagggccgagcgca 2520cacgctcaccggctccagatttatcagcaataaaccagccagccggaagggccgagcgca 2520
gaagtggtcctgcaactttatccgcctccatccagtctattaattgttgccgggaagcta 2580gaagtggtcctgcaactttatccgcctccatccagtctattaattgttgccgggaagcta 2580
gagtaagtagttcgccagttaatagtttgcgcaacgttgttgccattgctacaggcatcg 2640gagtaagtagttcgccagttaatagtttgcgcaacgttgttgccattgctacaggcatcg 2640
tggtgtcacgctcgtcgtttggtatggcttcattcagctccggttcccaacgatcaaggc 2700tggtgtcacgctcgtcgtttggtatggcttcattcagctccggttcccaacgatcaaggc 2700
gagttacatgatcccccatgttgtgcaaaaaagcggttagctccttcggtcctccgatcg 2760gagttacatgatcccccatgttgtgcaaaaaagcggttagctccttcggtcctccgatcg 2760
ttgtcagaagtaagttggccgcagtgttatcactcatggttatggcagcactgcataatt 2820ttgtcagaagtaagttggccgcagtgttatcactcatggttatggcagcactgcataatt 2820
ctcttactgtcatgccatccgtaagatgcttttctgtgactggtgagtactcaaccaagt 2880ctcttactgtcatgccatccgtaagatgcttttctgtgactggtgagtactcaaccaagt 2880
cattctgagaatagtgtatgcggcgaccgagttgctcttgcccggcgtcaatacgggata 2940cattctgagaatagtgtatgcggcgaccgagttgctcttgcccggcgtcaatacgggata 2940
ataccgcgccacatagcagaactttaaaagtgctcatcattggaaaacgttcttcggggc 3000ataccgcgccacatagcagaactttaaaagtgctcatcattggaaaacgttcttcggggc 3000
gaaaactctcaaggatcttaccgctgttgagatccagttcgatgtaacccactcgtgcac 3060gaaaactctcaaggatcttaccgctgttgagatccagttcgatgtaacccactcgtgcac 3060
ccaactgatcttcagcatcttttactttcaccagcgtttctgggtgagcaaaaacaggaa 3120ccaactgatcttcagcatcttttactttcaccagcgtttctgggtgagcaaaaacaggaa 3120
ggcaaaatgccgcaaaaaagggaataagggcgacacggaaatgttgaatactcatactct 3180ggcaaaatgccgcaaaaaagggaataagggcgacacggaaatgttgaatactcatactct 3180
tcctttttcaatattattgaagcatttatcagggttattgtctcatgagcggatacatat 3240tcctttttcaatattattgaagcatttatcagggttatgtctcatgagcggatacatat 3240
ttgaatgtatttagaaaaataaacaaataggggttccgcgcacatttccccgaaaagtgc 3300ttgaatgtatttgaaaaataaacaaataggggttccgcgcacatttccccgaaaagtgc 3300
cac 3303
<210>2<210>2
<211>3303<211>3303
<212>DNA<212>DNA
<213>人工序列<213> Artificial sequence
<400>2<400>2
ctaaattgtaagcgttaatattttgttaaaattcgcgttaaatttttgttaaatcagctc 60ctaaattgtaagcgttaatattttgttaaaattcgcgttaaatttttgttaaatcagctc 60
attttttaaccaataggccgaaatcggcaaaatcccttataaatcaaaagaatagaccga 120attttttaaccaataggccgaaatcggcaaaatcccttataaatcaaaagaatagaccga 120
gatagggttgagtgttgttccagtttggaacaagagtccactattaaagaacgtggactc 180gatagggttgagtgttgttccagtttggaacaagagtccactattaaagaacgtggactc 180
caacgtcaaagggcgaaaaaccgtctatcagggcgatggcccactacgtgaaccatcacc 240caacgtcaaagggcgaaaaaccgtctatcagggcgatggcccactacgtgaaccatcacc 240
ctaatcaagttttttggggtcgaggtgccgtaaagcactaaatcggaaccctaaagggag 300ctaatcaagttttttggggtcgaggtgccgtaaagcactaaatcggaaccctaaagggag 300
cccccgatttagagcttgacggggaaagccggcgaacgtggcgagaaaggaagggaagaa 360cccccgatttagagcttgacggggaaagccggcgaacgtggcgagaaaggaagggaagaa 360
agcgaaaggagcgggcgctagggcgctggcaagtgtagcggtcacgctgcgcgtaaccac 420agcgaaaggagcgggcgctagggcgctggcaagtgtagcggtcacgctgcgcgtaaccac 420
cacacccgccgcgcttaatgcgccgctacagggcgcgtcccattcgccattcaggctgcg 480cacacccgccgcgcttaatgcgccgctacagggcgcgtcccattcgccattcaggctgcg 480
caactgttgggaagggcgatcggtgcgggcctcttcgctattacgccagctggcgaaagg 540caactgttgggaagggcgatcggtgcgggcctcttcgctattacgccagctggcgaaagg 540
gggatgtgctgcaaggcgattaagttgggtaacgccagggttttcccagtcacgacgttg 600gggatgtgctgcaaggcgattaagttgggtaacgccagggttttcccagtcacgacgttg 600
taaaacgacggccagtgagcgcgcgtaatacgactcactatagggcgaattgggtacccg 660taaaacgacggccagtgagcgcgcgtaatacgactcactataggggcgaattgggtacccg 660
ctctagaactagtggatccgacgccgccatctctaggcccgcgccggccccctcgcacag 720ctctagaactagtggatccgacgccgccatctctaggcccgcgccggccccctcgcacag 720
acttgtgggagaagctcggctactcccctgccccggttaatttgcatataatatttccta 780acttgtgggagaagctcggctactcccctgccccggttaatttgcatataatatttccta 780
gtaactatagaggcttaatgtgcgataaaagacagataatctgttctttttaatactagc 840gtaactatagaggcttaatgtgcgataaaagacagataatctgttctttttaatactagc 840
tacattttacatgataggcttggatttctataagagatacaaatactaaattattatttt 900tacattttacatgataggcttggatttctataagagatacaaatactaaattattatttt 900
aaaaaacagcacaaaaggaaactcaccctaactgtaaagtaattgtgtgttttgagacta 960aaaaaacagcacaaaaggaaactcaccctaactgtaaagtaattgtgtgttttgagacta 960
taaatatcccttggagaaaagccttgtttgagttcaagcacctgacccttcaagagaggg 1020taaatatcccttggagaaaagccttgtttgagttcaagcacctgacccttcaagagaggg 1020
tcaggtgcttgaactcttttttgaattcctgcagcccgggggatccactagttctagagc 1080tcaggtgcttgaactcttttttgaattcctgcagcccgggggatccactagttctagagc 1080
ggccgccaccgcggtggagctccagcttttgttccctttagtgagggttaattgcgcgct 1140ggccgccaccgcggtggagctccagcttttgttccctttagtgagggttaattgcgcgct 1140
tggcgtaatcatggtcatagctgtttcctgtgtgaaattgttatccgctcacaattccac 1200tggcgtaatcatggtcatagctgtttcctgtgtgaaattgttatccgctcacaattccac 1200
acaacatacgagccggaagcataaagtgtaaagcctggggtgcctaatgagtgagctaac 1260acaacatacgagccggaagcataaagtgtaaagcctggggtgcctaatgagtgagctaac 1260
tcacattaattgcgttgcgctcactgcccgctttccagtcgggaaacctgtcgtgccagc 1320tcacattaattgcgttgcgctcactgcccgctttccagtcgggaaacctgtcgtgccagc 1320
tgcattaatgaatcggccaacgcgcggggagaggcggtttgcgtattgggcgctcttccg 1380tgcattaatgaatcggccaacgcgcggggagaggcggtttgcgtattgggcgctcttccg 1380
cttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcgagcggtatcagctc 1440cttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcgagcggtatcagctc 1440
actcaaaggcggtaatacggttatccacagaatcaggggataacgcaggaaagaacatgt 1500actcaaaggcggtaatacggttatccacagaatcaggggataacgcaggaaagaacatgt 1500
gagcaaaaggccagcaaaaggccaggaaccgtaaaaaggccgcgttgctggcgtttttcc 1560gagcaaaaggccagcaaaaggccaggaaccgtaaaaaggccgcgttgctggcgtttttcc 1560
ataggctccgcccccctgacgagcatcacaaaaatcgacgctcaagtcagaggtggcgaa 1620ataggctccgcccccctgacgagcatcacaaaaatcgacgctcaagtcagaggtggcgaa 1620
acccgacaggactataaagataccaggcgtttccccctggaagctccctcgtgcgctctc 1680acccgacaggactataaagataccaggcgtttccccctggaagctccctcgtgcgctctc 1680
ctgttccgaccctgccgcttaccggatacctgtccgcctttctcccttcgggaagcgtgg 1740ctgttccgaccctgccgcttaccggatacctgtccgcctttctcccttcgggaagcgtgg 1740
cgctttctcatagctcacgctgtaggtatctcagttcggtgtaggtcgttcgctccaagc 1800cgctttctcatagctcacgctgtaggtatctcagttcggtgtaggtcgttcgctccaagc 1800
tgggctgtgtgcacgaaccccccgttcagcccgaccgctgcgccttatccggtaactatc 1860tgggctgtgtgcacgaacccccccgttcagcccgaccgctgcgccttatccggtaactatc 1860
gtcttgagtccaacccggtaagacacgacttatcgccactggcagcagccactggtaaca 1920gtcttgagtccaacccggtaagacacgacttatcgccactggcagcagccactggtaaca 1920
ggattagcagagcgaggtatgtaggcggtgctacagagttcttgaagtggtggcctaact 1980ggattagcagagcgaggtatgtaggcggtgctacagagttcttgaagtggtggcctaact 1980
acggctacactagaaggacagtatttggtatctgcgctctgctgaagccagttaccttcg 2040acggctacactagaaggacagtatttggtatctgcgctctgctgaagccagttaccttcg 2040
gaaaaagagttggtagctcttgatccggcaaacaaaccaccgctggtagcggtggttttt 2100gaaaaagagttggtagctcttgatccggcaaacaaaccaccgctggtagcggtggttttt 2100
ttgtttgcaagcagcagattacgcgcagaaaaaaaggatctcaagaagatcctttgatct 2160ttgtttgcaagcagcagattacgcgcagaaaaaaaggatctcaagaagatcctttgatct 2160
tttctacggggtctgacgctcagtggaacgaaaactcacgttaagggattttggtcatga 2220tttctacggggtctgacgctcagtggaacgaaaactcacgttaagggattttggtcatga 2220
gattatcaaaaaggatcttcacctagatccttttaaattaaaaatgaagttttaaatcaa 2280gattatcaaaaaggatcttcacctagatccttttaaattaaaaatgaagttttaaatcaa 2280
tctaaagtatatatgagtaaacttggtctgacagttaccaatgcttaatcagtgaggcac 2340tctaaagtatatatgagtaaacttggtctgacagttaccaatgcttaatcagtgaggcac 2340
ctatctcagcgatctgtctatttcgttcatccatagttgcctgactccccgtcgtgtaga 2400ctatctcagcgatctgtctatttcgttcatccatagttgcctgactccccgtcgtgtaga 2400
taactacgatacgggagggcttaccatctggccccagtgctgcaatgataccgcgagacc 2460taactacgatacgggagggcttaccatctggccccagtgctgcaatgataccgcgagacc 2460
cacgctcaccggctccagatttatcagcaataaaccagccagccggaagggccgagcgca 2520cacgctcaccggctccagatttatcagcaataaaccagccagccggaagggccgagcgca 2520
gaagtggtcctgcaactttatccgcctccatccagtctattaattgttgccgggaagcta 2580gaagtggtcctgcaactttatccgcctccatccagtctattaattgttgccgggaagcta 2580
gagtaagtagttcgccagttaatagtttgcgcaacgttgttgccattgctacaggcatcg 2640gagtaagtagttcgccagttaatagtttgcgcaacgttgttgccattgctacaggcatcg 2640
tggtgtcacgctcgtcgtttggtatggcttcattcagctccggttcccaacgatcaaggc 2700tggtgtcacgctcgtcgtttggtatggcttcattcagctccggttcccaacgatcaaggc 2700
gagttacatgatcccccatgttgtgcaaaaaagcggttagctccttcggtcctccgatcg 2760gagttacatgatcccccatgttgtgcaaaaaagcggttagctccttcggtcctccgatcg 2760
ttgtcagaagtaagttggccgcagtgttatcactcatggttatggcagcactgcataatt 2820ttgtcagaagtaagttggccgcagtgttatcactcatggttatggcagcactgcataatt 2820
ctcttactgtcatgccatccgtaagatgcttttctgtgactggtgagtactcaaccaagt 2880ctcttactgtcatgccatccgtaagatgcttttctgtgactggtgagtactcaaccaagt 2880
cattctgagaatagtgtatgcggcgaccgagttgctcttgcccggcgtcaatacgggata 2940cattctgagaatagtgtatgcggcgaccgagttgctcttgcccggcgtcaatacgggata 2940
ataccgcgccacatagcagaactttaaaagtgctcatcattggaaaacgttcttcggggc 3000ataccgcgccacatagcagaactttaaaagtgctcatcattggaaaacgttcttcggggc 3000
gaaaactctcaaggatcttaccgctgttgagatccagttcgatgtaacccactcgtgcac 3060gaaaactctcaaggatcttaccgctgttgagatccagttcgatgtaacccactcgtgcac 3060
ccaactgatcttcagcatcttttactttcaccagcgtttctgggtgagcaaaaacaggaa 3120ccaactgatcttcagcatcttttactttcaccagcgtttctgggtgagcaaaaacaggaa 3120
ggcaaaatgccgcaaaaaagggaataagggcgacacggaaatgttgaatactcatactct 3180ggcaaaatgccgcaaaaaagggaataagggcgacacggaaatgttgaatactcatactct 3180
tcctttttcaatattattgaagcatttatcagggttattgtctcatgagcggatacatat 3240tcctttttcaatattattgaagcatttatcagggttatgtctcatgagcggatacatat 3240
ttgaatgtatttagaaaaataaacaaataggggttccgcgcacatttccccgaaaagtgc 3300ttgaatgtatttgaaaaataaacaaataggggttccgcgcacatttccccgaaaagtgc 3300
<210>3<210>3
<211>3303<211>3303
<212>DNA<212>DNA
<213>人工序列<213> Artificial sequence
<400>3<400>3
ctaaattgtaagcgttaatattttgttaaaattcgcgttaaatttttgttaaatcagctc 60ctaaattgtaagcgttaatattttgttaaaattcgcgttaaatttttgttaaatcagctc 60
attttttaaccaataggccgaaatcggcaaaatcccttataaatcaaaagaatagaccga 120attttttaaccaataggccgaaatcggcaaaatcccttataaatcaaaagaatagaccga 120
gatagggttgagtgttgttccagtttggaacaagagtccactattaaagaacgtggactc 180gatagggttgagtgttgttccagtttggaacaagagtccactattaaagaacgtggactc 180
caacgtcaaagggcgaaaaaccgtctatcagggcgatggcccactacgtgaaccatcacc 240caacgtcaaagggcgaaaaaccgtctatcagggcgatggcccactacgtgaaccatcacc 240
ctaatcaagttttttggggtcgaggtgccgtaaagcactaaatcggaaccctaaagggag 300ctaatcaagttttttggggtcgaggtgccgtaaagcactaaatcggaaccctaaagggag 300
cccccgatttagagcttgacggggaaagccggcgaacgtggcgagaaaggaagggaagaa 360cccccgatttagagcttgacggggaaagccggcgaacgtggcgagaaaggaagggaagaa 360
agcgaaaggagcgggcgctagggcgctggcaagtgtagcggtcacgctgcgcgtaaccac 420agcgaaaggagcgggcgctagggcgctggcaagtgtagcggtcacgctgcgcgtaaccac 420
cacacccgccgcgcttaatgcgccgctacagggcgcgtcccattcgccattcaggctgcg 480cacacccgccgcgcttaatgcgccgctacagggcgcgtcccattcgccattcaggctgcg 480
caactgttgggaagggcgatcggtgcgggcctcttcgctattacgccagctggcgaaagg 540caactgttgggaagggcgatcggtgcgggcctcttcgctattacgccagctggcgaaagg 540
gggatgtgctgcaaggcgattaagttgggtaacgccagggttttcccagtcacgacgttg 600gggatgtgctgcaaggcgattaagttgggtaacgccagggttttcccagtcacgacgttg 600
taaaacgacggccagtgagcgcgcgtaatacgactcactatagggcgaattgggtacccg 660taaaacgacggccagtgagcgcgcgtaatacgactcactataggggcgaattgggtacccg 660
ctctagaactagtggatccgacgccgccatctctaggcccgcgccggccccctcgcacag 720ctctagaactagtggatccgacgccgccatctctaggcccgcgccggccccctcgcacag 720
acttgtgggagaagctcggctactcccctgccccggttaatttgcatataatatttccta 780acttgtgggagaagctcggctactcccctgccccggttaatttgcatataatatttccta 780
gtaactatagaggcttaatgtgcgataaaagacagataatctgttctttttaatactagc 840gtaactatagaggcttaatgtgcgataaaagacagataatctgttctttttaatactagc 840
tacattttacatgataggcttggatttctataagagatacaaatactaaattattatttt 900tacattttacatgataggcttggatttctataagagatacaaatactaaattattatttt 900
aaaaaacagcacaaaaggaaactcaccctaactgtaaagtaattgtgtgttttgagacta 960aaaaaacagcacaaaaggaaactcaccctaactgtaaagtaattgtgtgttttgagacta 960
taaatatcccttggagaaaagccttgtttgcagctgaacaacatgtcattcaagagatga 1020taaatatcccttggagaaaagccttgtttgcagctgaacaacatgtcattcaagagatga 1020
catgttgttcagctgcttttttgaattcctgcagcccgggggatccactagttctagagc 1080catgttgttcagctgcttttttgaattcctgcagcccgggggatccactagttctagagc 1080
ggccgccaccgcggtggagctccagcttttgttccctttagtgagggttaattgcgcgct 1140ggccgccaccgcggtggagctccagcttttgttccctttagtgagggttaattgcgcgct 1140
tggcgtaatcatggtcatagctgtttcctgtgtgaaattgttatccgctcacaattccac 1200tggcgtaatcatggtcatagctgtttcctgtgtgaaattgttatccgctcacaattccac 1200
acaacatacgagccggaagcataaagtgtaaagcctggggtgcctaatgagtgagctaac 1260acaacatacgagccggaagcataaagtgtaaagcctggggtgcctaatgagtgagctaac 1260
tcacattaattgcgttgcgctcactgcccgctttccagtcgggaaacctgtcgtgccagc 1320tcacattaattgcgttgcgctcactgcccgctttccagtcgggaaacctgtcgtgccagc 1320
tgcattaatgaatcggccaacgcgcggggagaggcggtttgcgtattgggcgctcttccg 1380tgcattaatgaatcggccaacgcgcggggagaggcggtttgcgtattgggcgctcttccg 1380
cttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcgagcggtatcagctc 1440cttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcgagcggtatcagctc 1440
actcaaaggcggtaatacggttatccacagaatcaggggataacgcaggaaagaacatgt 1500actcaaaggcggtaatacggttatccacagaatcaggggataacgcaggaaagaacatgt 1500
gagcaaaaggccagcaaaaggccaggaaccgtaaaaaggccgcgttgctggcgtttttcc 1560gagcaaaaggccagcaaaaggccaggaaccgtaaaaaggccgcgttgctggcgtttttcc 1560
ataggctccgcccccctgacgagcatcacaaaaatcgacgctcaagtcagaggtggcgaa 1620ataggctccgcccccctgacgagcatcacaaaaatcgacgctcaagtcagaggtggcgaa 1620
acccgacaggactataaagataccaggcgtttccccctggaagctccctcgtgcgctctc 1680acccgacaggactataaagataccaggcgtttccccctggaagctccctcgtgcgctctc 1680
ctgttccgaccctgccgcttaccggatacctgtccgcctttctcccttcgggaagcgtgg 1740ctgttccgaccctgccgcttaccggatacctgtccgcctttctcccttcgggaagcgtgg 1740
cgctttctcatagctcacgctgtaggtatctcagttcggtgtaggtcgttcgctccaagc 1800cgctttctcatagctcacgctgtaggtatctcagttcggtgtaggtcgttcgctccaagc 1800
tgggctgtgtgcacgaaccccccgttcagcccgaccgctgcgccttatccggtaactatc 1860tgggctgtgtgcacgaacccccccgttcagcccgaccgctgcgccttatccggtaactatc 1860
gtcttgagtccaacccggtaagacacgacttatcgccactggcagcagccactggtaaca 1920gtcttgagtccaacccggtaagacacgacttatcgccactggcagcagccactggtaaca 1920
ggattagcagagcgaggtatgtaggcggtgctacagagttcttgaagtggtggcctaact 1980ggattagcagagcgaggtatgtaggcggtgctacagagttcttgaagtggtggcctaact 1980
acggctacactagaaggacagtatttggtatctgcgctctgctgaagccagttaccttcg 2040acggctacactagaaggacagtatttggtatctgcgctctgctgaagccagttaccttcg 2040
gaaaaagagttggtagctcttgatccggcaaacaaaccaccgctggtagcggtggttttt 2100gaaaaagagttggtagctcttgatccggcaaacaaaccaccgctggtagcggtggttttt 2100
ttgtttgcaagcagcagattacgcgcagaaaaaaaggatctcaagaagatcctttgatct 2160ttgtttgcaagcagcagattacgcgcagaaaaaaaggatctcaagaagatcctttgatct 2160
tttctacggggtctgacgctcagtggaacgaaaactcacgttaagggattttggtcatga 2220tttctacggggtctgacgctcagtggaacgaaaactcacgttaagggattttggtcatga 2220
gattatcaaaaaggatcttcacctagatccttttaaattaaaaatgaagttttaaatcaa 2280gattatcaaaaaggatcttcacctagatccttttaaattaaaaatgaagttttaaatcaa 2280
tctaaagtatatatgagtaaacttggtctgacagttaccaatgcttaatcagtgaggcac 2340tctaaagtatatatgagtaaacttggtctgacagttaccaatgcttaatcagtgaggcac 2340
ctatctcagcgatctgtctatttcgttcatccatagttgcctgactccccgtcgtgtaga 2400ctatctcagcgatctgtctatttcgttcatccatagttgcctgactccccgtcgtgtaga 2400
taactacgatacgggagggcttaccatctggccccagtgctgcaatgataccgcgagacc 2460taactacgatacgggagggcttaccatctggccccagtgctgcaatgataccgcgagacc 2460
cacgctcaccggctccagatttatcagcaataaaccagccagccggaagggccgagcgca 2520cacgctcaccggctccagatttatcagcaataaaccagccagccggaagggccgagcgca 2520
gaagtggtcctgcaactttatccgcctccatccagtctattaattgttgccgggaagcta 2580gaagtggtcctgcaactttatccgcctccatccagtctattaattgttgccgggaagcta 2580
gagtaagtagttcgccagttaatagtttgcgcaacgttgttgccattgctacaggcatcg 2640gagtaagtagttcgccagttaatagtttgcgcaacgttgttgccattgctacaggcatcg 2640
tggtgtcacgctcgtcgtttggtatggcttcattcagctccggttcccaacgatcaaggc 2700tggtgtcacgctcgtcgtttggtatggcttcattcagctccggttcccaacgatcaaggc 2700
gagttacatgatcccccatgttgtgcaaaaaagcggttagctccttcggtcctccgatcg 2760gagttacatgatcccccatgttgtgcaaaaaagcggttagctccttcggtcctccgatcg 2760
ttgtcagaagtaagttggccgcagtgttatcactcatggttatggcagcactgcataatt 2820ttgtcagaagtaagttggccgcagtgttatcactcatggttatggcagcactgcataatt 2820
ctcttactgtcatgccatccgtaagatgcttttctgtgactggtgagtactcaaccaagt 2880ctcttactgtcatgccatccgtaagatgcttttctgtgactggtgagtactcaaccaagt 2880
cattctgagaatagtgtatgcggcgaccgagttgctcttgcccggcgtcaatacgggata 2940cattctgagaatagtgtatgcggcgaccgagttgctcttgcccggcgtcaatacgggata 2940
ataccgcgccacatagcagaactttaaaagtgctcatcattggaaaacgttcttcggggc 3000ataccgcgccacatagcagaactttaaaagtgctcatcattggaaaacgttcttcggggc 3000
gaaaactctcaaggatcttaccgctgttgagatccagttcgatgtaacccactcgtgcac 3060gaaaactctcaaggatcttaccgctgttgagatccagttcgatgtaacccactcgtgcac 3060
ccaactgatcttcagcatcttttactttcaccagcgtttctgggtgagcaaaaacaggaa 3120ccaactgatcttcagcatcttttactttcaccagcgtttctgggtgagcaaaaacaggaa 3120
ggcaaaatgccgcaaaaaagggaataagggcgacacggaaatgttgaatactcatactct 3180ggcaaaatgccgcaaaaaagggaataagggcgacacggaaatgttgaatactcatactct 3180
tcctttttcaatattattgaagcatttatcagggttattgtctcatgagcggatacatat 3240tcctttttcaatattattgaagcatttatcagggttatgtctcatgagcggatacatat 3240
ttgaatgtatttagaaaaataaacaaataggggttccgcgcacatttccccgaaaagtgc 3300ttgaatgtatttgaaaaataaacaaataggggttccgcgcacatttccccgaaaagtgc 3300
cac 3303
<210>4<210>4
<211>3303<211>3303
<212>DNA<212>DNA
<213>人工序列<213> Artificial sequence
<400>4<400>4
ctaaattgtaagcgttaatattttgttaaaattcgcgttaaatttttgttaaatcagctc 60ctaaattgtaagcgttaatattttgttaaaattcgcgttaaatttttgttaaatcagctc 60
attttttaaccaataggccgaaatcggcaaaatcccttataaatcaaaagaatagaccga 120attttttaaccaataggccgaaatcggcaaaatcccttataaatcaaaagaatagaccga 120
gatagggttgagtgttgttccagtttggaacaagagtccactattaaagaacgtggactc 180gatagggttgagtgttgttccagtttggaacaagagtccactattaaagaacgtggactc 180
caacgtcaaagggcgaaaaaccgtctatcagggcgatggcccactacgtgaaccatcacc 240caacgtcaaagggcgaaaaaccgtctatcagggcgatggcccactacgtgaaccatcacc 240
ctaatcaagttttttggggtcgaggtgccgtaaagcactaaatcggaaccctaaagggag 300ctaatcaagttttttggggtcgaggtgccgtaaagcactaaatcggaaccctaaagggag 300
cccccgatttagagcttgacggggaaagccggcgaacgtggcgagaaaggaagggaagaa 360cccccgatttagagcttgacggggaaagccggcgaacgtggcgagaaaggaagggaagaa 360
agcgaaaggagcgggcgctagggcgctggcaagtgtagcggtcacgctgcgcgtaaccac 420agcgaaaggagcgggcgctagggcgctggcaagtgtagcggtcacgctgcgcgtaaccac 420
cacacccgccgcgcttaatgcgccgctacagggcgcgtcccattcgccattcaggctgcg 480cacacccgccgcgcttaatgcgccgctacagggcgcgtcccattcgccattcaggctgcg 480
caactgttgggaagggcgatcggtgcgggcctcttcgctattacgccagctggcgaaagg 540caactgttgggaagggcgatcggtgcgggcctcttcgctattacgccagctggcgaaagg 540
gggatgtgctgcaaggcgattaagttgggtaacgccagggttttcccagtcacgacgttg 600gggatgtgctgcaaggcgattaagttgggtaacgccagggttttcccagtcacgacgttg 600
taaaacgacggccagtgagcgcgcgtaatacgactcactatagggcgaattgggtacccg 660taaaacgacggccagtgagcgcgcgtaatacgactcactataggggcgaattgggtacccg 660
ctctagaactagtggatccgacgccgccatctctaggcccgcgccggccccctcgcacag 720ctctagaactagtggatccgacgccgccatctctaggcccgcgccggccccctcgcacag 720
acttgtgggagaagctcggctactcccctgccccggttaatttgcatataatatttccta 780acttgtgggagaagctcggctactcccctgccccggttaatttgcatataatatttccta 780
gtaactatagaggcttaatgtgcgataaaagacagataatctgttctttttaatactagc 840gtaactatagaggcttaatgtgcgataaaagacagataatctgttctttttaatactagc 840
tacattttacatgataggcttggatttctataagagatacaaatactaaattattatttt 900tacattttacatgataggcttggatttctataagagatacaaatactaaattattatttt 900
aaaaaacagcacaaaaggaaactcaccctaactgtaaagtaattgtgtgttttgagacta 960aaaaaacagcacaaaaggaaactcaccctaactgtaaagtaattgtgtgttttgagacta 960
taaatatcccttggagaaaagccttgtttgaagctgcagagacgtgacttcaagagagtc 1020taaatatcccttggagaaaagccttgtttgaagctgcagagacgtgacttcaagagagtc 1020
acgtctctgcagcttcttttttgaattcctgcagcccgggggatccactagttctagagc 1080acgtctctgcagcttcttttttgaattcctgcagcccgggggatccactagttctagagc 1080
ggccgccaccgcggtggagctccagcttttgttccctttagtgagggttaattgcgcgct 1140ggccgccaccgcggtggagctccagcttttgttccctttagtgagggttaattgcgcgct 1140
tggcgtaatcatggtcatagctgtttcctgtgtgaaattgttatccgctcacaattccac 1200tggcgtaatcatggtcatagctgtttcctgtgtgaaattgttatccgctcacaattccac 1200
acaacatacgagccggaagcataaagtgtaaagcctggggtgcctaatgagtgagctaac 1260acaacatacgagccggaagcataaagtgtaaagcctggggtgcctaatgagtgagctaac 1260
tcacattaattgcgttgcgctcactgcccgctttccagtcgggaaacctgtcgtgccagc 1320tcacattaattgcgttgcgctcactgcccgctttccagtcgggaaacctgtcgtgccagc 1320
tgcattaatgaatcggccaacgcgcggggagaggcggtttgcgtattgggcgctcttccg 1380tgcattaatgaatcggccaacgcgcggggagaggcggtttgcgtattgggcgctcttccg 1380
cttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcgagcggtatcagctc 1440cttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcgagcggtatcagctc 1440
actcaaaggcggtaatacggttatccacagaatcaggggataacgcaggaaagaacatgt 1500actcaaaggcggtaatacggttatccacagaatcaggggataacgcaggaaagaacatgt 1500
gagcaaaaggccagcaaaaggccaggaaccgtaaaaaggccgcgttgctggcgtttttcc 1560gagcaaaaggccagcaaaaggccaggaaccgtaaaaaggccgcgttgctggcgtttttcc 1560
ataggctccgcccccctgacgagcatcacaaaaatcgacgctcaagtcagaggtggcgaa 1620ataggctccgcccccctgacgagcatcacaaaaatcgacgctcaagtcagaggtggcgaa 1620
acccgacaggactataaagataccaggcgtttccccctggaagctccctcgtgcgctctc 1680acccgacaggactataaagataccaggcgtttccccctggaagctccctcgtgcgctctc 1680
ctgttccgaccctgccgcttaccggatacctgtccgcctttctcccttcgggaagcgtgg 1740ctgttccgaccctgccgcttaccggatacctgtccgcctttctcccttcgggaagcgtgg 1740
cgctttctcatagctcacgctgtaggtatctcagttcggtgtaggtcgttcgctccaagc 1800cgctttctcatagctcacgctgtaggtatctcagttcggtgtaggtcgttcgctccaagc 1800
tgggctgtgtgcacgaaccccccgttcagcccgaccgctgcgccttatccggtaactatc 1860tgggctgtgtgcacgaacccccccgttcagcccgaccgctgcgccttatccggtaactatc 1860
gtcttgagtccaacccggtaagacacgacttatcgccactggcagcagccactggtaaca 1920gtcttgagtccaacccggtaagacacgacttatcgccactggcagcagccactggtaaca 1920
ggattagcagagcgaggtatgtaggcggtgctacagagttcttgaagtggtggcctaact 1980ggattagcagagcgaggtatgtaggcggtgctacagagttcttgaagtggtggcctaact 1980
acggctacactagaaggacagtatttggtatctgcgctctgctgaagccagttaccttcg 2040acggctacactagaaggacagtatttggtatctgcgctctgctgaagccagttaccttcg 2040
gaaaaagagttggtagctcttgatccggcaaacaaaccaccgctggtagcggtggttttt 2100gaaaaagagttggtagctcttgatccggcaaacaaaccaccgctggtagcggtggttttt 2100
ttgtttgcaagcagcagattacgcgcagaaaaaaaggatctcaagaagatcctttgatct 2160ttgtttgcaagcagcagattacgcgcagaaaaaaaggatctcaagaagatcctttgatct 2160
tttctacggggtctgacgctcagtggaacgaaaactcacgttaagggattttggtcatga 2220tttctacggggtctgacgctcagtggaacgaaaactcacgttaagggattttggtcatga 2220
gattatcaaaaaggatcttcacctagatccttttaaattaaaaatgaagttttaaatcaa 2280gattatcaaaaaggatcttcacctagatccttttaaattaaaaatgaagttttaaatcaa 2280
tctaaagtatatatgagtaaacttggtctgacagttaccaatgcttaatcagtgaggcac 2340tctaaagtatatatgagtaaacttggtctgacagttaccaatgcttaatcagtgaggcac 2340
ctatctcagcgatctgtctatttcgttcatccatagttgcctgactccccgtcgtgtaga 2400ctatctcagcgatctgtctatttcgttcatccatagttgcctgactccccgtcgtgtaga 2400
taactacgatacgggagggcttaccatctggccccagtgctgcaatgataccgcgagacc 2460taactacgatacgggagggcttaccatctggccccagtgctgcaatgataccgcgagacc 2460
cacgctcaccggctccagatttatcagcaataaaccagccagccggaagggccgagcgca 2520cacgctcaccggctccagatttatcagcaataaaccagccagccggaagggccgagcgca 2520
gaagtggtcctgcaactttatccgcctccatccagtctattaattgttgccgggaagcta 2580gaagtggtcctgcaactttatccgcctccatccagtctattaattgttgccgggaagcta 2580
gagtaagtagttcgccagttaatagtttgcgcaacgttgttgccattgctacaggcatcg 2640gagtaagtagttcgccagttaatagtttgcgcaacgttgttgccattgctacaggcatcg 2640
tggtgtcacgctcgtcgtttggtatggcttcattcagctccggttcccaacgatcaaggc 2700tggtgtcacgctcgtcgtttggtatggcttcattcagctccggttcccaacgatcaaggc 2700
gagttacatgatcccccatgttgtgcaaaaaagcggttagctccttcggtcctccgatcg 2760gagttacatgatcccccatgttgtgcaaaaaagcggttagctccttcggtcctccgatcg 2760
ttgtcagaagtaagttggccgcagtgttatcactcatggttatggcagcactgcataatt 2820ttgtcagaagtaagttggccgcagtgttatcactcatggttatggcagcactgcataatt 2820
ctcttactgtcatgccatccgtaagatgcttttctgtgactggtgagtactcaaccaagt 2880ctcttactgtcatgccatccgtaagatgcttttctgtgactggtgagtactcaaccaagt 2880
cattctgagaatagtgtatgcggcgaccgagttgctcttgcccggcgtcaatacgggata 2940cattctgagaatagtgtatgcggcgaccgagttgctcttgcccggcgtcaatacgggata 2940
ataccgcgccacatagcagaactttaaaagtgctcatcattggaaaacgttcttcggggc 3000ataccgcgccacatagcagaactttaaaagtgctcatcattggaaaacgttcttcggggc 3000
gaaaactctcaaggatcttaccgctgttgagatccagttcgatgtaacccactcgtgcac 3060gaaaactctcaaggatcttaccgctgttgagatccagttcgatgtaacccactcgtgcac 3060
ccaactgatcttcagcatcttttactttcaccagcgtttctgggtgagcaaaaacaggaa 3120ccaactgatcttcagcatcttttactttcaccagcgtttctgggtgagcaaaaacaggaa 3120
ggcaaaatgccgcaaaaaagggaataagggcgacacggaaatgttgaatactcatactct 3180ggcaaaatgccgcaaaaaagggaataagggcgacacggaaatgttgaatactcatactct 3180
tcctttttcaatattattgaagcatttatcagggttattgtctcatgagcggatacatat 3240tcctttttcaatattattgaagcatttatcagggttatgtctcatgagcggatacatat 3240
ttgaatgtatttagaaaaataaacaaataggggttccgcgcacatttccccgaaaagtgc 3300ttgaatgtatttgaaaaataaacaaataggggttccgcgcacatttccccgaaaagtgc 3300
cac 3303
Claims (4)
Priority Applications (1)
| Application Number | Priority Date | Filing Date | Title |
|---|---|---|---|
| CNB2005101142547A CN100357436C (en) | 2005-07-01 | 2005-10-25 | SiRNA for inhibiting Stat3 gene expression and preparation thereof |
Applications Claiming Priority (3)
| Application Number | Priority Date | Filing Date | Title |
|---|---|---|---|
| CN200510057152.6 | 2005-07-01 | ||
| CNA2005100571526A CN1733916A (en) | 2005-07-01 | 2005-07-01 | siRNA inhibiting Stat3 gene expression and preparation method thereof |
| CNB2005101142547A CN100357436C (en) | 2005-07-01 | 2005-10-25 | SiRNA for inhibiting Stat3 gene expression and preparation thereof |
Publications (2)
| Publication Number | Publication Date |
|---|---|
| CN1778918A CN1778918A (en) | 2006-05-31 |
| CN100357436C true CN100357436C (en) | 2007-12-26 |
Family
ID=36769373
Family Applications (1)
| Application Number | Title | Priority Date | Filing Date |
|---|---|---|---|
| CNB2005101142547A Expired - Fee Related CN100357436C (en) | 2005-07-01 | 2005-10-25 | SiRNA for inhibiting Stat3 gene expression and preparation thereof |
Country Status (1)
| Country | Link |
|---|---|
| CN (1) | CN100357436C (en) |
Families Citing this family (5)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| CN1974759B (en) * | 2006-07-26 | 2010-06-09 | 吉林大学 | Attenuated Salmonella Carrying Recombinant Plasmid and Its Application in Antitumor |
| SMT201900060T1 (en) * | 2011-04-01 | 2019-02-28 | Ionis Pharmaceuticals Inc | Modulation of signal transducer and activator of transcription 3 (stat3) expression |
| CN102304538B (en) * | 2011-08-05 | 2014-05-21 | 汪运山 | Construction and screening as well as applications for siRNAs expression carrier of stomach cancer target STAT3 gene |
| CN103952406B (en) * | 2014-03-19 | 2016-08-17 | 天津市第一中心医院 | The siRNA of targeting STAT3 gene of suppression people's malignant glioma propagation and expression vector thereof and application |
| CN109706151B (en) * | 2019-01-25 | 2019-12-31 | 中国海洋大学 | shRNA targeting silencing of STAT3 in human non-small cell lung cancer cells |
Citations (2)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| WO2004063372A1 (en) * | 2003-01-08 | 2004-07-29 | Tsutomu Suzuki | PROCESS FOR PRODUCING siRNA |
| WO2005005634A2 (en) * | 2003-07-09 | 2005-01-20 | Università Degli Studi Di Roma La Sapienza | siRNA EXPRESSION SYSTEM |
-
2005
- 2005-10-25 CN CNB2005101142547A patent/CN100357436C/en not_active Expired - Fee Related
Patent Citations (2)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| WO2004063372A1 (en) * | 2003-01-08 | 2004-07-29 | Tsutomu Suzuki | PROCESS FOR PRODUCING siRNA |
| WO2005005634A2 (en) * | 2003-07-09 | 2005-01-20 | Università Degli Studi Di Roma La Sapienza | siRNA EXPRESSION SYSTEM |
Non-Patent Citations (3)
| Title |
|---|
| A Mutant Stat5b with Weaker DNA Binding Defines a KeyDefective Pathway in Non-Obese Diabetic (NOD) Mice. Davoodi.Semiromi,A.,She,J..X.GenBank登录号AY299489. 2003 * |
| RNA干扰技术沉默STAT3对人前列腺癌细胞生长的抑制作用 高丽芳等.中华男科学杂志,第11卷第1期 2005 * |
| STAT3特异性小干扰RNA表达载体的构建及其对STAT3表达的抑制 吴健等.肿瘤,第25卷第1期 2005 * |
Also Published As
| Publication number | Publication date |
|---|---|
| CN1778918A (en) | 2006-05-31 |
Similar Documents
| Publication | Publication Date | Title |
|---|---|---|
| CA2524569C (en) | A method of regulating gene expression | |
| WO2008140126A1 (en) | Single-stranded cyclic rna, and method for production thereof | |
| Boudreau et al. | Generation of hairpin-based RNAi vectors for biological and therapeutic application | |
| CN106032532A (en) | Small-activating RNA, preparation method and applications thereof | |
| JP2020037599A (en) | Production and utilization of novel therapeutic anti-cancer agents | |
| Yang et al. | RNA interference against peroxisome proliferator-activated receptor δ gene promotes proliferation of human colorectal cancer cells | |
| AU2008286701B2 (en) | Improved gene silencing methods | |
| CN100357436C (en) | SiRNA for inhibiting Stat3 gene expression and preparation thereof | |
| WO2005021751A1 (en) | A self-processing rna expression cassette | |
| CN104031916B (en) | New RNAi precursors and its preparation and application | |
| AU2004256322B2 (en) | siRNA expression system | |
| Shan et al. | A quick and efficient approach for gene silencing by using triple putative microRNA-based short hairpin RNAs | |
| KR101480523B1 (en) | siRNA for Inhibiting Endogenous rpS3 Expression | |
| WO2016145608A1 (en) | Small activating rna, manufacturing method and application thereof | |
| CN102433352A (en) | Construction method and functional verification of a hepatocyte-selective multi-target interference plasmid vector based on microRNA structure | |
| CN101353655B (en) | siRNA inhibiting expression of vascular endothelial growth factor receptor genes and use thereof | |
| JP7153033B2 (en) | Systems and methods for cell-type specific translation of RNA molecules in eukaryotes | |
| CN103103189B (en) | Novel method for overexpression of single MicroRNA (Micro Ribonucleic Acid) mature body sequence | |
| CN101570751A (en) | PDK1-siRNA sequence and fusion expression vector thereof | |
| CN101892236B (en) | Construction and application of RNA interference expression vector of targeted ZNF268 gene | |
| CN103952413B (en) | The rnai expression vector construction of targeting IFNAR 2 gene and application | |
| US8795988B2 (en) | Primer-extension based method for the generation of siRNA/miRNA expression vectors | |
| WO2006130976A1 (en) | Interfering rnas, methods for their production, and use | |
| CN111849967B (en) | A kind of siRNA molecule and its application | |
| Herzog | Generation of microRNA sponge library |
Legal Events
| Date | Code | Title | Description |
|---|---|---|---|
| C06 | Publication | ||
| PB01 | Publication | ||
| C10 | Entry into substantive examination | ||
| SE01 | Entry into force of request for substantive examination | ||
| C14 | Grant of patent or utility model | ||
| GR01 | Patent grant | ||
| C17 | Cessation of patent right | ||
| CF01 | Termination of patent right due to non-payment of annual fee |
Granted publication date: 20071226 Termination date: 20111025 |