CN107817349A - Urine protein marker of chronic pancreatitis and application thereof - Google Patents
Urine protein marker of chronic pancreatitis and application thereof Download PDFInfo
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- CN107817349A CN107817349A CN201710999745.7A CN201710999745A CN107817349A CN 107817349 A CN107817349 A CN 107817349A CN 201710999745 A CN201710999745 A CN 201710999745A CN 107817349 A CN107817349 A CN 107817349A
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- albumen
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- G—PHYSICS
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- G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
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Abstract
Description
技术领域technical field
本申请涉及临床医学,具体涉及人慢性胰腺炎相关的蛋白标志物。具体而言,本申请涉及利用大鼠慢性胰腺炎疾病模型和质谱分析获得的人慢性胰腺炎疾病诊断、病情监测相关的蛋白标志物的用途。This application relates to clinical medicine, in particular to protein markers related to human chronic pancreatitis. Specifically, the present application relates to the use of protein markers related to the diagnosis and condition monitoring of human chronic pancreatitis obtained by using the rat chronic pancreatitis disease model and mass spectrometry analysis.
背景技术Background technique
生物标志物是与生理或病理性过程相关的可监测的变化。疾病标志物的研宄一直是近年的研究热点和难点。合适的标志物意味着能够更早、更灵敏的提示疾病发生发展情况,并为疾病的诊疗、预后提供准确的信息,从而更有利于病人的健康。Biomarkers are monitorable changes associated with physiological or pathological processes. The study of disease markers has always been a research focus and difficulty in recent years. Appropriate markers mean that they can indicate the occurrence and development of the disease earlier and more sensitively, and provide accurate information for the diagnosis, treatment and prognosis of the disease, which is more beneficial to the health of the patient.
生物标志物的本质是变化,尿液作为机体经由泌尿系统及尿路排出体外的排泄物,富集全身的变化,敏感,不受稳态机制的调控。因此其变化早,可以反映各种疾病早期的变化。这些变化就是潜在的疾病标志物(参见Youhe G.Can urine be the gold mine forbiomarker discovery?Sci China Life Sci 2013;43)。尿蛋白质组学作为一种新颖,无创的分析工具,可以在尿液里挖掘疾病特异的早期生物标志物,目前尿蛋白组分析深度可鉴定到6000多个蛋白(Zhao,M等人A comprehensive urinary proteome analysis:potential applications in disease biomarker discovery and validation.TheLancet,2015.386:p.S63)。在疾病标志物的研究中具有重大的临床应用前景。The essence of biomarkers is change. Urine, as the excrement excreted by the body through the urinary system and urinary tract, enriches the changes in the whole body, is sensitive, and is not regulated by the homeostatic mechanism. Therefore, it changes early and can reflect the early changes of various diseases. These changes are potential disease markers (see Youhe G. Can urine be the gold mine for biomarker discovery? Sci China Life Sci 2013; 43). Urinary proteomics, as a novel, non-invasive analysis tool, can mine early disease-specific biomarkers in urine. Currently, more than 6,000 proteins can be identified in the depth of urinary proteomic analysis (Zhao, M et al. A comprehensive urinary proteome analysis: potential applications in disease biomarker discovery and validation. The Lancet, 2015.386: p. S63). It has great clinical application prospects in the research of disease markers.
慢性胰腺炎(chronic pancreatitis,CP)是由各种病因引起胰腺组织和功能不可逆改变的慢性炎症性疾病。其临床表现主要为腹痛,病理表现主要为胰腺实质慢性炎症损害和间质纤维化(Tetsuhide Ito等人,Evidence-based clinical practice guidelinesfor chronic pancreatitis.2015[J].J Gastroenterol,2016)。Chronic pancreatitis (CP) is a chronic inflammatory disease that causes irreversible changes in pancreatic tissue and function due to various etiologies. Its clinical manifestation is mainly abdominal pain, and its pathological manifestations are mainly chronic inflammatory damage of pancreatic parenchyma and interstitial fibrosis (Tetsuhide Ito et al., Evidence-based clinical practice guidelines for chronic pancreatitis. 2015[J]. J Gastroenterol, 2016).
近年来发病率逐年增加,病因复杂,病情迁延,严重影响患者的生活质量。目前临床上对该疾病的诊断尤其是早期诊断仍然面临很多挑战。慢性胰腺炎的诊断方法主要有影像学检查,胰腺功能检查和胰腺活检。影像学的信息不能在疾病更早期提供有价值的诊断线索,胰腺功能检查敏感度低,以及胰腺活检是CP诊断的确定性标准,但活检本身存在一定的缺陷。因此,亟需开发无创的生物标志物。In recent years, the incidence rate has increased year by year, the etiology is complicated, and the disease is protracted, which seriously affects the quality of life of patients. At present, the clinical diagnosis of this disease, especially the early diagnosis, still faces many challenges. The diagnostic methods of chronic pancreatitis mainly include imaging examination, pancreatic function test and pancreatic biopsy. Imaging information cannot provide valuable diagnostic clues at an earlier stage of the disease. Pancreatic function tests have low sensitivity. Pancreatic biopsy is a definitive standard for the diagnosis of CP, but biopsy itself has certain defects. Therefore, there is an urgent need to develop noninvasive biomarkers.
发明内容Contents of the invention
鉴于本领域的上述需求,根据本公开的一些实施方案,提供了蛋白的鉴定试剂在制备用于诊断慢性胰腺炎的试剂中的用途,其中所述鉴定试剂特异于选自以下任一项或其组合:In view of the above needs in the art, according to some embodiments of the present disclosure, a use of a protein identification reagent in the preparation of a reagent for diagnosing chronic pancreatitis is provided, wherein the identification reagent is specific to any one of the following or its combination:
CD48抗原、Igγ-1链C区、L-乳酸脱氢酶B链、Na(+)/H(+)交换调节因子nhe-rf3、Thy-1膜糖蛋白、T-激肽原2、V型质子ATP酶亚单位S1、α2-巯基糖蛋白、α-2-巯基糖蛋白、β-2-微球蛋白、氨基酰化酶-1A、白介素-4受体α亚单位、半胱氨酸蛋白酶抑制剂-B、巢蛋白-2、淀粉样βA4蛋白、多聚免疫球蛋白受体、二肽基肽酶2、分拣蛋白、分泌型焦磷酸蛋白24、钙粘蛋白-2、谷氨酰胺基肽酶、谷氨酰半胱氨酸合成酶催化亚单位(GCLC)、核连蛋白-2、黄曲霉素B1醛还原酶3、肌动蛋白胞质1、基质-重构-相关蛋白8、甲基多巴Aβ亚基、胶原C-肽链内切酶增强子1、聚糖蛋白-3、聚糖核心蛋白、醌氧化还原酶、磷蛋白质分泌24、磷酸甘油酸酯变位酶1、磷酸赖氨酸磷酸组氨酸亚磷酸无机焦磷酸磷酸酶、硫酸软骨素蛋白多糖4、氯胞内通道蛋白1、钠依赖的中性氨基酸载体B(0)AT3、内皮细胞选择性粘附分子、凝血素、前列腺腺激肽释放酶-6、线粒体犬尿氨酸/α氨基乙二酸转氨酶、软骨低聚物基质蛋白、神经细胞黏附分子1、生长抑制蛋白6、双糖链蛋白多糖、碳酸酐酶1、唾液酸O-乙酰酯酶、纤连蛋白、血清淀粉样p物质、乙醇脱氢酶(辅酶Ⅱ(+))、中性和碱性氨基酸运输蛋白质rBAT、组织α-左旋岩藻糖苷酶。CD48 antigen, Igγ-1 chain C region, L-lactate dehydrogenase B chain, Na(+)/H(+) exchange regulator nhe-rf3, Thy-1 membrane glycoprotein, T-kininogen 2, V Proton-type ATPase subunit S1, α2-mercaptoglycoprotein, α-2-mercaptoglycoprotein, β-2-microglobulin, aminoacylase-1A, interleukin-4 receptor α subunit, cysteine Protease Inhibitor-B, Nestin-2, Amyloid-βA4 Protein, Polymeric Immunoglobulin Receptor, Dipeptidyl Peptidase 2, Sortilin, Secreted Pyrophosphoprotein 24, Cadherin-2, Glutamine Aminopeptidase, glutamylcysteine synthetase catalytic subunit (GCLC), nucleocin-2, aflatoxin B1 aldehyde reductase 3, actin cytoplasmic 1, matrix-remodeling-associated Protein 8, methyldopa Aβ subunit, collagen C-endopeptidase enhancer 1, glycan protein-3, glycan core protein, quinone oxidoreductase, phosphoprotein secretion 24, phosphoglycerate translocation Enzyme 1, phospholysine phosphohistidine phosphite inorganic pyrophosphate phosphatase, chondroitin sulfate proteoglycan 4, chloride intracellular channel protein 1, sodium-dependent neutral amino acid carrier B(0)AT3, endothelial cell selectivity Adhesion molecule, prothrombin, prostatic gland kallikrein-6, mitochondrial kynurenine/α-aminooxalate transaminase, cartilage oligomer matrix protein, neural cell adhesion molecule 1, growth inhibitory protein 6, double sugar chain Proteoglycan, carbonic anhydrase 1, sialic acid O-acetylesterase, fibronectin, serum amyloid substance p, alcohol dehydrogenase (coenzyme II(+)), neutral and basic amino acid transport protein rBAT, tissue alpha - Levofucosidase.
在具体的实施方案中,和健康对照相比较,选自以下蛋白的表达水平降低指示所述受试者患有慢性胰腺炎:CD48抗原、L-乳酸脱氢酶B链、Na(+)/H(+)交换调节因子nhe-rf3、Thy-1膜糖蛋白、V型质子ATP酶亚单位S1、α-2-巯基糖蛋白、氨基酰化酶-1A、白介素-4受体α亚单位、半胱氨酸蛋白酶抑制剂-B、巢蛋白-2、淀粉样βA4蛋白、二肽基肽酶2、分拣蛋白、分泌型焦磷酸蛋白24、钙粘蛋白-2、谷氨酰胺基肽酶、谷氨酰半胱氨酸合成酶催化亚单位、黄曲霉素B1醛还原酶3、肌动蛋白胞质1、基质-重构-相关蛋白8、甲基多巴Aβ亚基、胶原C-肽链内切酶增强子1、聚糖蛋白-3、聚糖核心蛋白、醌氧化还原酶、磷蛋白质分泌24、磷酸甘油酸酯变位酶1、磷酸赖氨酸磷酸组氨酸亚磷酸无机焦磷酸磷酸酶、硫酸软骨素蛋白多糖4、氯胞内通道蛋白1、钠依赖的中性氨基酸载体B(0)AT3、内皮细胞选择性粘附分子、凝血素、线粒体犬尿氨酸/α氨基乙二酸转氨酶、软骨低聚物基质蛋白、神经细胞黏附分子1、生长抑制蛋白6、双糖链蛋白多糖、唾液酸O-乙酰酯酶、纤连蛋白、血清淀粉样p物质、乙醇脱氢酶(辅酶Ⅱ(+))、中性和碱性氨基酸运输蛋白质rBAT、组织α-左旋岩藻糖苷酶、及其组合。In a particular embodiment, a decreased expression level of a protein selected from the group consisting of CD48 antigen, L-lactate dehydrogenase B chain, Na(+)/ H(+) exchange regulator nhe-rf3, Thy-1 membrane glycoprotein, V-type proton ATPase subunit S1, α-2-thiol glycoprotein, aminoacylase-1A, interleukin-4 receptor α subunit , cystatin-B, nestin-2, amyloid-βA4 protein, dipeptidyl peptidase 2, sortilin, secreted pyrophosphoprotein 24, cadherin-2, glutaminyl peptide Enzyme, Glutamylcysteine Synthetase Catalytic Subunit, Aflatoxin B1 Aldehyde Reductase 3, Actin Cytoplasm 1, Matrix-Remodeling-Associated Protein 8, Methyldopa Aβ Subunit, Collagen C-endopeptidase enhancer 1, glycan protein-3, glycan core protein, quinone oxidoreductase, phosphoprotein secretion 24, phosphoglycerate mutase 1, phospholysine phosphohistidine sub Phosphate inorganic pyrophosphate phosphatase, chondroitin sulfate proteoglycan 4, chloride intracellular channel protein 1, sodium-dependent neutral amino acid carrier B(0)AT3, endothelial cell selective adhesion molecule, prothrombin, mitochondrial kynurenine /α-aminooxalate transaminase, cartilage oligomeric matrix protein, neural cell adhesion molecule 1, growth inhibitory protein 6, biglycan, sialic acid O-acetylesterase, fibronectin, serum amyloid substance p, Alcohol dehydrogenase (coenzyme II(+)), neutral and basic amino acid transport protein rBAT, tissue α-L-fucosidase, and combinations thereof.
在具体的实施方案中,和健康对照相比较,选自以下蛋白的表达水平提高指示所述受试者患有慢性胰腺炎:Igγ-1链C区、T-激肽原2、β-2-微球蛋白、多聚免疫球蛋白受体、核连蛋白-2、前列腺腺激肽释放酶-6、碳酸酐酶1及其组合。In a specific embodiment, an increased expression level of a protein selected from the group consisting of Igγ-1 chain C region, T-kininogen 2, β-2, as compared to healthy controls indicates that the subject has chronic pancreatitis - Microglobulin, Polymeric Immunoglobulin Receptor, Nucleonectin-2, Prostate Kallikrein-6, Carbonic Anhydrase 1 and combinations thereof.
在具体的实施方案中,健康对照是指未患有慢性胰腺炎的个体。In specific embodiments, healthy controls refer to individuals who do not suffer from chronic pancreatitis.
在另一个实施方案中,提供了选自以下的蛋白的鉴定试剂在制备用于受试者的慢性胰腺炎早期诊断的试剂中的用途,其中所述鉴定试剂特异于选自以下任一项或其组合:Igγ-1链C区、核连蛋白-2、β-2-微球蛋白、白介素-4受体α亚单位、磷酸甘油酸酯变位酶1、二肽基肽酶2、分泌型焦磷酸蛋白24、聚糖核心蛋白、内皮细胞选择性粘附分子、巢蛋白-2、血清淀粉样p物质、神经细胞黏附分子1、磷酸赖氨酸磷酸组氨酸亚磷酸无机焦磷酸磷酸酶、软骨低聚物基质蛋白及其组合。In another embodiment, use of an identification reagent selected from the following proteins in the preparation of a reagent for the early diagnosis of chronic pancreatitis in a subject is provided, wherein the identification reagent is specific to any one of the following or Its combination: Ig gamma-1 chain C region, nucleonectin-2, beta-2-microglobulin, interleukin-4 receptor alpha subunit, phosphoglycerate mutase 1, dipeptidyl peptidase 2, secretory Pyrophosphoprotein type 24, glycan core protein, endothelial cell selective adhesion molecule, nestin-2, serum amyloid substance p, neuronal cell adhesion molecule 1, phospholysine phosphohistidine phosphite inorganic pyrophosphate phosphate Enzymes, cartilage oligomeric matrix proteins and combinations thereof.
在具体的实施方案中,和健康对照中的蛋白水平相比较,选自以下的蛋白的表达水平提高指示所述受试者存在慢性胰腺炎的早期损伤:Igγ-1链C区、核连蛋白-2和β-2-微球蛋白。In a specific embodiment, an increase in the expression level of a protein selected from the group consisting of the following early damage to chronic pancreatitis, as compared to the protein level in a healthy control: Igγ-1 chain C region, nucleonectin -2 and beta-2-microglobulin.
在具体的实施方案中,相较于健康对照,选自以下的蛋白的表达水平降低指示所述受试者患有慢性胰腺炎:白介素-4受体α亚单位、磷酸甘油酸酯变位酶1、二肽基肽酶2、分泌型焦磷酸蛋白24、聚糖核心蛋白、内皮细胞选择性粘附分子、巢蛋白-2、血清淀粉样p物质、神经细胞黏附分子1、磷酸赖氨酸磷酸组氨酸亚磷酸无机焦磷酸磷酸酶、软骨低聚物基质蛋白、及其组合。In a specific embodiment, a reduced expression level of a protein selected from the group consisting of interleukin-4 receptor alpha subunit, phosphoglycerate mutase, as compared to healthy controls indicates that the subject has chronic pancreatitis 1. Dipeptidyl peptidase 2, secreted pyrophosphoprotein 24, glycan core protein, endothelial cell selective adhesion molecule, nestin-2, serum amyloid substance p, nerve cell adhesion molecule 1, phospholysine Phosphohistidinephosphite inorganic pyrophosphate phosphatases, cartilage oligomer matrix proteins, and combinations thereof.
在具体的实施方案中,健康对照是指未患有慢性胰腺炎的个体。In specific embodiments, healthy controls refer to individuals who do not suffer from chronic pancreatitis.
在另一个实施方案中,提供了鉴定试剂在制备用于受试者的慢性胰腺炎严重程度监测试剂中的用途,其中所述鉴定试剂特异于选自以下的蛋白:β-2-微球蛋白、T-激肽原2、碳酸酐酶1、多聚免疫球蛋白受体、聚糖核心蛋白、磷酸甘油酸酯变位酶1、二肽基肽酶2、内皮细胞选择性粘附分子、巢蛋白-2、血清淀粉样p物质、磷蛋白质分泌24、神经细胞黏附分子1、磷酸赖氨酸磷酸组氨酸亚磷酸无机焦磷酸磷酸酶、软骨低聚物基质蛋白、CD48抗原、聚糖蛋白-3、基质-重构-相关蛋白8、淀粉样βA4蛋白、硫酸软骨素蛋白多糖4、Thy-1膜糖蛋白、纤连蛋白、α2-巯基糖蛋白、组织α-左旋岩藻糖苷酶、肌动蛋白胞质1、生长抑制蛋白6、凝血素、醌氧化还原酶、中性和碱性氨基酸运输蛋白质rBAT、甲基多巴Aβ亚基、线粒体犬尿氨酸/a-氨基乙二酸转氨酶、及其组合。In another embodiment, there is provided the use of an identification reagent in the preparation of a reagent for monitoring the severity of chronic pancreatitis in a subject, wherein the identification reagent is specific for a protein selected from the group consisting of β-2-microglobulin , T-kininogen 2, carbonic anhydrase 1, polyimmunoglobulin receptor, glycan core protein, phosphoglycerate mutase 1, dipeptidyl peptidase 2, endothelial cell selective adhesion molecule, Nestin-2, Serum Amyloid Substance P, Phosphoprotein Secretion 24, Neural Cell Adhesion Molecule 1, Phospholysine Phosphohistidine Phosphite Inorganic Pyrophosphate Phosphatase, Cartilage Oligomer Matrix Protein, CD48 Antigen, Glycans Protein-3, matrix-remodeling-associated protein 8, amyloid βA4 protein, chondroitin sulfate proteoglycan 4, Thy-1 membrane glycoprotein, fibronectin, α2-thiol glycoprotein, tissue α-levofucosidase , actin cytoplasmic 1, growth arrestin 6, prothrombin, quinone oxidoreductase, neutral and basic amino acid transport protein rBAT, methyldopa Aβ subunit, mitochondrial kynurenine/a-aminoethanedi Acid transaminases, and combinations thereof.
在具体的实施方案中,和健康对照中的蛋白水平相比较,选自以下的蛋白的表达水平提高指示所述受试者慢性胰腺炎恶化:β-2-微球蛋白和T-激肽原2、碳酸酐酶1、多聚免疫球蛋白受体;相较于健康对照,受试者中选自以下的蛋白的表达水平降低指示所述受试者慢性胰腺炎恶化:聚糖核心蛋白、磷酸甘油酸酯变位酶1、二肽基肽酶2、内皮细胞选择性粘附分子、巢蛋白-2、血清淀粉样p物质、磷蛋白质分泌24、神经细胞黏附分子1、磷酸赖氨酸磷酸组氨酸亚磷酸无机焦磷酸磷酸酶、软骨低聚物基质蛋白、CD48抗原、聚糖蛋白-3、基质-重构-相关蛋白8、淀粉样βA4蛋白、硫酸软骨素蛋白多糖4、Thy-1膜糖蛋白、纤连蛋白、α2-巯基糖蛋白、组织α-左旋岩藻糖苷酶、肌动蛋白胞质1、生长抑制蛋白6、凝血素、醌氧化还原酶、中性和碱性氨基酸运输蛋白质rBAT、甲基多巴Aβ亚基、线粒体犬尿氨酸/a-氨基乙二酸转氨酶、及其组合。In a specific embodiment, an increased expression level of a protein selected from the group consisting of beta-2-microglobulin and T-kininogen is indicative of exacerbation of chronic pancreatitis in said subject, as compared to the protein level in a healthy control 2. Carbonic anhydrase 1, polyimmunoglobulin receptor; compared to healthy controls, a decrease in the expression level of a protein selected from the following in a subject indicates exacerbation of chronic pancreatitis in the subject: glycan core protein, Phosphoglycerate mutase 1, dipeptidyl peptidase 2, endothelial cell selective adhesion molecule, nestin-2, serum amyloid substance p, phosphoprotein secretion 24, neuronal cell adhesion molecule 1, phospholysine Phosphohistidine phosphite inorganic pyrophosphate phosphatase, cartilage oligomer matrix protein, CD48 antigen, glycan protein-3, matrix-remodeling-associated protein 8, amyloid βA4 protein, chondroitin sulfate proteoglycan 4, Thy -1 membrane glycoprotein, fibronectin, α2-thiol glycoprotein, tissue α-L-fucosidase, actin cytoplasmic 1, growth arrestin 6, prothrombin, quinone oxidoreductase, neutral and alkaline Amino acid transport protein rBAT, methyldopa Aβ subunit, mitochondrial kynurenine/a-aminooxalate transaminase, and combinations thereof.
适用于本公开的鉴定试剂是质谱鉴定试剂、抗体或其抗原结合片段。在具体的实施方案中,抗体是单克隆抗体。本公开对单克隆抗体的物种来源没有限制,任何能够结合上述蛋白的抗体均可以使用。Identification reagents suitable for use in the present disclosure are mass spectrometric identification reagents, antibodies or antigen-binding fragments thereof. In specific embodiments, the antibody is a monoclonal antibody. The present disclosure has no limitation on the species source of the monoclonal antibody, and any antibody capable of binding to the above-mentioned proteins can be used.
在具体的实施方案中,抗原结合片段包括但不限于:Fab、Fab'、(Fab')2、Fv、ScFv、双特异抗体、三特异抗体、四特异抗体、双-scFv。任何保留了抗原结合活性的抗体片段均适用于本公开。In specific embodiments, antigen-binding fragments include, but are not limited to: Fab, Fab', (Fab')2, Fv, ScFv, diabodies, triabodies, tetrabodies, bi-scFv. Any antibody fragment that retains antigen binding activity is suitable for use in the present disclosure.
在具体的实施方式中,根据本公开的蛋白标记物能够用于诊断和/或预后慢性胰腺炎。In specific embodiments, protein markers according to the present disclosure can be used for diagnosis and/or prognosis of chronic pancreatitis.
在具体的实施方案中,表达水平选自核酸水平和蛋白质水平,尤其是蛋白质水平。In a specific embodiment, the expression level is selected from nucleic acid level and protein level, especially protein level.
在具体的实施方案中,所述受试者是哺乳动物,优选是人。In specific embodiments, said subject is a mammal, preferably a human.
在具体的实施方案中,表达水平是在尿液样本中测定的。In specific embodiments, the expression level is determined in a urine sample.
在具体的实施方案中,所述蛋白是尿液蛋白。In specific embodiments, said protein is urinary protein.
根据另一些实施方案,还提供了一种用于诊断慢性胰腺炎的试剂盒或芯片,其包含选自以下的蛋白的鉴定试剂、或者由选自以下的蛋白的鉴定试剂组成:CD48抗原、Igγ-1链C区、L-乳酸脱氢酶B链、Na(+)/H(+)交换调节因子nhe-rf3、Thy-1膜糖蛋白、T-激肽原2、V型质子ATP酶亚单位S1、α2-巯基糖蛋白、α-2-巯基糖蛋白、β-2-微球蛋白、氨基酰化酶-1A、白介素-4受体α亚单位、半胱氨酸蛋白酶抑制剂-B、巢蛋白-2、淀粉样βA4蛋白、多聚免疫球蛋白受体、二肽基肽酶2、分拣蛋白、分泌型焦磷酸蛋白24、钙粘蛋白-2、谷氨酰胺基肽酶、谷氨酰半胱氨酸合成酶催化亚单位、核连蛋白-2、黄曲霉素B1醛还原酶3、肌动蛋白胞质1、基质-重构-相关蛋白8、甲基多巴Aβ亚基、胶原C-肽链内切酶增强子1、聚糖蛋白-3、聚糖核心蛋白、醌氧化还原酶、磷蛋白质分泌24、磷酸甘油酸酯变位酶1、磷酸赖氨酸磷酸组氨酸亚磷酸无机焦磷酸磷酸酶、硫酸软骨素蛋白多糖4、氯胞内通道蛋白1、钠依赖的中性氨基酸载体B(0)AT3、内皮细胞选择性粘附分子、凝血素、前列腺腺激肽释放酶-6、线粒体犬尿氨酸/α氨基乙二酸转氨酶、软骨低聚物基质蛋白、神经细胞黏附分子1、生长抑制蛋白6、双糖链蛋白多糖、碳酸酐酶1、唾液酸O-乙酰酯酶、纤连蛋白、血清淀粉样p物质、乙醇脱氢酶(辅酶Ⅱ(+))、中性和碱性氨基酸运输蛋白质rBAT、组织α-左旋岩藻糖苷酶及其组合。According to other embodiments, there is also provided a kit or chip for diagnosing chronic pancreatitis, which comprises, or consists of, an identification reagent for a protein selected from: CD48 antigen, Igγ -1 chain C region, L-lactate dehydrogenase B chain, Na(+)/H(+) exchange regulator nhe-rf3, Thy-1 membrane glycoprotein, T-kininogen 2, V-type proton ATPase Subunit S1, α2-mercaptoglycoprotein, α-2-mercaptoglycoprotein, β-2-microglobulin, aminoacylase-1A, interleukin-4 receptor α subunit, cysteine protease inhibitor- B. Nestin-2, amyloid-βA4 protein, polyimmunoglobulin receptor, dipeptidyl peptidase 2, sortilin, secreted pyrophosphoprotein 24, cadherin-2, glutaminyl peptidase , Glutamylcysteine Synthetase Catalytic Subunit, Nucleonectin-2, Aflatoxin B1 Aldehyde Reductase 3, Actin Cytoplasm 1, Matrix-Remodeling-Associated Protein 8, Methyldopa Aβ subunit, collagen C-endopeptidase enhancer 1, glycan protein-3, glycan core protein, quinone oxidoreductase, phosphoprotein secretion 24, phosphoglycerate mutase 1, phospholysine Phosphohistidine phosphite inorganic pyrophosphate phosphatase, chondroitin sulfate proteoglycan 4, chloride intracellular channel protein 1, sodium-dependent neutral amino acid carrier B(0)AT3, endothelial cell selective adhesion molecule, prothrombin, Prostate gland kallikrein-6, mitochondrial kynurenine/α-aminooxalate transaminase, cartilage oligomeric matrix protein, neuronal cell adhesion molecule 1, growth inhibitory protein 6, biglycan, carbonic anhydrase 1 , sialic acid O-acetyl esterase, fibronectin, serum amyloid substance p, alcohol dehydrogenase (coenzyme Ⅱ (+)), neutral and basic amino acid transport protein rBAT, tissue α-levofucosidase and its combination.
在一些实施方案中,试剂盒中包含上述蛋白的鉴定试剂。在另一些实施方案中,芯片上固定有上述蛋白的鉴定试剂。在一些实施方案中,所述鉴定试剂是抗体或其抗原结合片段。In some embodiments, identification reagents for the above-mentioned proteins are included in the kit. In other embodiments, identification reagents for the above-mentioned proteins are immobilized on the chip. In some embodiments, the identification reagent is an antibody or antigen-binding fragment thereof.
在具体的实施方案中,提供了一种用于慢性胰腺炎早期诊断的试剂盒或芯片,其包含选自以下的蛋白的鉴定试剂、或者由选自以下的蛋白的鉴定试剂组成:Igγ-1链C区、核连蛋白-2、β-2-微球蛋白、白介素-4受体α亚单位、磷酸甘油酸酯变位酶1、二肽基肽酶2、分泌型焦磷酸蛋白24、聚糖核心蛋白、内皮细胞选择性粘附分子、巢蛋白-2、血清淀粉样p物质、神经细胞黏附分子1、磷酸赖氨酸磷酸组氨酸亚磷酸无机焦磷酸磷酸酶、软骨低聚物基质蛋白。In a specific embodiment, a kit or chip for early diagnosis of chronic pancreatitis is provided, which comprises or consists of an identification reagent for a protein selected from: Igγ-1 Chain C region, nucleonectin-2, β-2-microglobulin, interleukin-4 receptor α subunit, phosphoglycerate mutase 1, dipeptidyl peptidase 2, secreted pyrophosphoprotein 24, Glycan core protein, endothelial cell selective adhesion molecule, nestin-2, serum amyloid substance p, neural cell adhesion molecule 1, phospholysine phosphohistidine phosphite inorganic pyrophosphate phosphatase, cartilage oligomers matrix protein.
在另一些具体的实施方案中,提供了一种用于监测受试者慢性胰腺炎严重程度的试剂盒或芯片,其包含选自以下的蛋白的鉴定试剂、或者由选自以下的蛋白的鉴定试剂组成:β-2-微球蛋白、T-激肽原2、碳酸酐酶1、多聚免疫球蛋白受体、聚糖核心蛋白、磷酸甘油酸酯变位酶1、二肽基肽酶2、内皮细胞选择性粘附分子、巢蛋白-2、血清淀粉样p物质、磷蛋白质分泌24、神经细胞黏附分子1、磷酸赖氨酸磷酸组氨酸亚磷酸无机焦磷酸磷酸酶、软骨低聚物基质蛋白、CD48抗原、聚糖蛋白-3、基质-重构-相关蛋白8、淀粉样βA4蛋白、硫酸软骨素蛋白多糖4、Thy-1膜糖蛋白、纤连蛋白、α2-巯基糖蛋白、组织α-左旋岩藻糖苷酶、肌动蛋白胞质1、生长抑制蛋白6、凝血素、醌氧化还原酶、中性和碱性氨基酸运输蛋白质rBAT、甲基多巴Aβ亚基、线粒体犬尿氨酸/a-氨基乙二酸转氨酶。In other specific embodiments, a kit or chip for monitoring the severity of chronic pancreatitis in a subject is provided, which comprises an identification reagent selected from the following proteins, or is identified by the identification of the proteins selected from Reagent composition: β-2-microglobulin, T-kininogen 2, carbonic anhydrase 1, polyimmunoglobulin receptor, glycan core protein, phosphoglycerate mutase 1, dipeptidyl peptidase 2. Endothelial cell selective adhesion molecule, nestin-2, serum amyloid substance P, phosphoprotein secretion 24, nerve cell adhesion molecule 1, phospholysine phosphohistidine phosphite inorganic pyrophosphate phosphatase, cartilage low Polymeric matrix protein, CD48 antigen, glycan protein-3, matrix-remodeling-associated protein 8, amyloid βA4 protein, chondroitin sulfate proteoglycan 4, Thy-1 membrane glycoprotein, fibronectin, α2-thiol sugar Protein, tissue α-L-fucosidase, actin cytoplasmic 1, growth arrestin 6, prothrombin, quinone oxidoreductase, neutral and basic amino acid transport protein rBAT, methyldopa Aβ subunit, mitochondria Kynurenine/a-aminooxalate transaminase.
根据一些实施方案,提供了一种用于诊断受试者中慢性胰腺炎的方法,包括步骤:According to some embodiments, there is provided a method for diagnosing chronic pancreatitis in a subject comprising the steps of:
1)获得受试者的尿液样本,1) Obtain a urine sample from the subject,
2)任选地,从尿液样本中分离尿蛋白,2) Optionally, isolating urinary protein from the urine sample,
3)确定受试者尿液样本中选自以下的蛋白的表达水平:CD48抗原、Igγ-1链C区、L-乳酸脱氢酶B链、Na(+)/H(+)交换调节因子nhe-rf3、Thy-1膜糖蛋白、T-激肽原2、V型质子ATP酶亚单位S1、α2-巯基糖蛋白、α-2-巯基糖蛋白、β-2-微球蛋白、氨基酰化酶-1A、白介素-4受体α亚单位、半胱氨酸蛋白酶抑制剂-B、巢蛋白-2、淀粉样βA4蛋白、多聚免疫球蛋白受体、二肽基肽酶2、分拣蛋白、分泌型焦磷酸蛋白24、钙粘蛋白-2、谷氨酰胺基肽酶、谷氨酰半胱氨酸合成酶催化亚单位、核连蛋白-2、黄曲霉素B1醛还原酶3、肌动蛋白胞质1、基质-重构-相关蛋白8、甲基多巴Aβ亚基、胶原C-肽链内切酶增强子1、聚糖蛋白-3、聚糖核心蛋白、醌氧化还原酶、磷蛋白质分泌24、磷酸甘油酸酯变位酶1、磷酸赖氨酸磷酸组氨酸亚磷酸无机焦磷酸磷酸酶、硫酸软骨素蛋白多糖4、氯胞内通道蛋白1、钠依赖的中性氨基酸载体B(0)AT3、内皮细胞选择性粘附分子、凝血素、前列腺腺激肽释放酶-6、线粒体犬尿氨酸/α氨基乙二酸转氨酶、软骨低聚物基质蛋白、神经细胞黏附分子1、生长抑制蛋白6、双糖链蛋白多糖、碳酸酐酶1、唾液酸O-乙酰酯酶、纤连蛋白、血清淀粉样p物质、乙醇脱氢酶(辅酶Ⅱ(+))、中性和碱性氨基酸运输蛋白质rBAT、组织α-左旋岩藻糖苷酶、及其组合。3) Determine the expression level of the protein selected from the following in the subject's urine sample: CD48 antigen, Igγ-1 chain C region, L-lactate dehydrogenase B chain, Na(+)/H(+) exchange regulator nhe-rf3, Thy-1 membrane glycoprotein, T-kininogen 2, V-type proton ATPase subunit S1, α2-thiol glycoprotein, α-2-thiol glycoprotein, β-2-microglobulin, amino Acylase-1A, Interleukin-4 receptor alpha subunit, Cystatin-B, Nestin-2, Amyloid βA4 protein, Polymeric immunoglobulin receptor, Dipeptidyl peptidase 2, Sortilin, secreted pyrophosphoprotein 24, cadherin-2, glutaminyl peptidase, glutamyl cysteine synthetase catalytic subunit, nucleectin-2, aflatoxin B1 aldehyde reduction Enzyme 3, actin cytoplasm 1, matrix-remodeling-associated protein 8, methyldopa Aβ subunit, collagen C-endopeptidase enhancer 1, glycan-3, glycan core protein, Quinone oxidoreductase, phosphoprotein secretion 24, phosphoglycerate mutase 1, phospholysine phosphohistidine phosphite inorganic pyrophosphate phosphatase, chondroitin sulfate proteoglycan 4, chloride intracellular channel protein 1, sodium Dependent neutral amino acid carrier B(0)AT3, endothelial cell selective adhesion molecule, prothrombin, prostate gland kallikrein-6, mitochondrial kynurenine/α-aminooxalate transaminase, cartilage oligomeric matrix protein, nerve cell adhesion molecule 1, growth inhibitory protein 6, biglycan, carbonic anhydrase 1, sialic acid O-acetyl esterase, fibronectin, serum amyloid substance p, alcohol dehydrogenase (coenzyme Ⅱ ( +)), neutral and basic amino acid transport protein rBAT, tissue α-L-fucosidase, and combinations thereof.
在具体的实施方案中,使用质谱方法、ELISA方法、或Western方法确定表达水平。In specific embodiments, expression levels are determined using mass spectrometry methods, ELISA methods, or Western methods.
当采用质谱方法确定蛋白及其表达水平时,在获得尿液样本的步骤之后,还可以包括消化步骤。在具体的实施方式中,用蛋白酶消化尿液样本中的蛋白。When mass spectrometry is used to determine the protein and its expression level, after the step of obtaining the urine sample, a digestion step may also be included. In a specific embodiment, proteins in the urine sample are digested with proteases.
根据一些实施方案,提供了一种用于早期诊断受试者中慢性胰腺炎的方法,包括步骤:According to some embodiments, there is provided a method for early diagnosis of chronic pancreatitis in a subject, comprising the steps of:
1)获得受试者和健康对照的尿液样本,1) Obtain urine samples from subjects and healthy controls,
2)确定受试者和健康对照的尿液样本中选自以下的蛋白的表达水平:Igγ-1链C区、核连蛋白-2、β-2-微球蛋白、白介素-4受体α亚单位、磷酸甘油酸酯变位酶1、二肽基肽酶2、分泌型焦磷酸蛋白24、聚糖核心蛋白、内皮细胞选择性粘附分子、巢蛋白-2、血清淀粉样p物质、神经细胞黏附分子1、磷酸赖氨酸磷酸组氨酸亚磷酸无机焦磷酸磷酸酶、软骨低聚物基质蛋白、及其组合,2) Determining the expression levels of proteins selected from the group consisting of Igγ-1 chain C region, nucleonectin-2, β-2-microglobulin, interleukin-4 receptor α in urine samples of subjects and healthy controls Subunits, phosphoglycerate mutase 1, dipeptidyl peptidase 2, secreted pyrophosphoprotein 24, glycan core protein, endothelial cell selective adhesion molecule, nestin-2, serum amyloid substance p, Neural cell adhesion molecule 1, phospholysine phosphohistidine phosphite inorganic pyrophosphate phosphatase, cartilage oligomer matrix protein, and combinations thereof,
3)将受试者中所述蛋白的表达水平和健康对照中所述蛋白的表达水平进行比较,3) comparing the expression level of the protein in the subject with the expression level of the protein in the healthy control,
4)确定所述受试者是否患有慢性胰腺炎。4) Determining whether the subject has chronic pancreatitis.
根据一些实施方案,提供了一种用于监测受试者中慢性胰腺炎严重程度的方法,包括步骤:According to some embodiments, there is provided a method for monitoring the severity of chronic pancreatitis in a subject comprising the steps of:
1)获得受试者和健康对照的尿液样本,1) Obtain urine samples from subjects and healthy controls,
2)和健康对照相比,确定受试者尿液样本中选自以下的蛋白的表达水平:β-2-微球蛋白、T-激肽原2、碳酸酐酶1、多聚免疫球蛋白受体、聚糖核心蛋白、磷酸甘油酸酯变位酶1、二肽基肽酶2、内皮细胞选择性粘附分子、巢蛋白-2、血清淀粉样p物质、磷蛋白质分泌24、神经细胞黏附分子1、磷酸赖氨酸磷酸组氨酸亚磷酸无机焦磷酸磷酸酶、软骨低聚物基质蛋白、CD48抗原、聚糖蛋白-3、基质-重构-相关蛋白8、淀粉样βA4蛋白、硫酸软骨素蛋白多糖4、Thy-1膜糖蛋白、纤连蛋白、α2-巯基糖蛋白、组织α-左旋岩藻糖苷酶、肌动蛋白胞质1、生长抑制蛋白6、凝血素、醌氧化还原酶、中性和碱性氨基酸运输蛋白质rBAT、甲基多巴Aβ亚基、线粒体犬尿氨酸/a-氨基乙二酸转氨酶、及其组合,2) Determining the expression level of a protein selected from the group consisting of β-2-microglobulin, T-kininogen 2, carbonic anhydrase 1, polyimmunoglobulin in the subject's urine sample compared to healthy controls Receptors, Glycan Core Protein, Phosphoglycerate Mutase 1, Dipeptidyl Peptidase 2, Endothelial Cell Selective Adhesion Molecule, Nestin-2, Serum Amyloid Substance P, Phosphoprotein Secretion 24, Neuronal Cells Adhesion molecule 1, phospholysine phosphohistidine phosphite inorganic pyrophosphate phosphatase, cartilage oligomer matrix protein, CD48 antigen, glycan protein-3, matrix-remodeling-associated protein 8, amyloid βA4 protein, Chondroitin sulfate proteoglycan 4, Thy-1 membrane glycoprotein, fibronectin, α2-thiol glycoprotein, tissue α-L-fucosidase, actin cytoplasmic 1, growth arrestin 6, prothrombin, quinone oxidation Reductase, neutral and basic amino acid transport protein rBAT, methyldopa Aβ subunit, mitochondrial kynurenine/a-aminooxalate transaminase, and combinations thereof,
3)将受试者所述蛋白的表达水平和健康对照所述蛋白的表达水平进行比较,3) comparing the expression level of the protein in the subject with the expression level of the protein in the healthy control,
4)确定所述受试者的慢性胰腺炎是否进展或恶化。4) Determining whether the subject's chronic pancreatitis has progressed or worsened.
附图说明Description of drawings
图1:慢性胰腺炎组大鼠和对照组大鼠体重监测结果。●代表模型组;■代表正常对照组。*表示p<0.05;**表示p<0.01。Figure 1: Body weight monitoring results of rats in the chronic pancreatitis group and rats in the control group. ● represents the model group; ■ represents the normal control group. * indicates p<0.05; ** indicates p<0.01.
图2A至图2E:对照组(A)、慢性胰腺炎模型第14(B)、21(C)、28(D)和42天组(E)的大鼠胰腺组织切片HE染色结果。Figure 2A to Figure 2E: HE staining results of rat pancreas tissue sections in the control group (A), chronic pancreatitis model groups at day 14 (B), 21 (C), 28 (D) and 42 days (E).
图3A至图3D:对照组(A)、慢性胰腺炎模型第21(B)、28(C)和42天组(D)的大鼠胰腺组织切片马松染色结果。Figure 3A to Figure 3D: Masson staining results of pancreatic tissue sections of rats in the control group (A), chronic pancreatitis model groups on day 21 (B), 28 (C) and 42 days (D).
具体实施方式Detailed ways
下面将通过下述非限制性实施例进一步说明本申请。本领域技术人员公知,在不背离本申请精神的情况下,可以对本申请做出许多修改,这样的修改也落入本申请的范围。如无特别说明,所使用的实验材料均可从商业公司获取。The present application will be further illustrated by the following non-limiting examples. Those skilled in the art know that many modifications can be made to the application without departing from the spirit of the application, and such modifications also fall within the scope of the application. Unless otherwise specified, all experimental materials used were obtained from commercial companies.
实施例Example
实施例1:慢性胰腺炎大鼠模型的建立Embodiment 1: Establishment of chronic pancreatitis rat model
二乙基二硫代氮基甲酸钠(diethyldithiocarbamate,DDC)诱导的慢性胰腺炎大鼠模型纤维化可以模拟慢性胰腺炎疾病发生的过程(参见Naoki Matsumura等人,Study onFree Radicals and Pancreatic Fibrosis-Pancreatic Fibrosis Induced by RepeatedInjections of Superoxide Dismutase Inhibitor Panereas,2001,22;53-57)。观察胰腺纤维化从正常、早期纤维化、纤维化进展的整体变化,其病理过程和病理特征与人类的慢性胰腺炎相似。DDC腹腔注射引起大鼠胰腺损伤呈一个渐进性过程,且具有很好的重复性。利用该动物模型模拟慢性胰腺炎的发病过程,对临床上早期诊断、监测病情进展有重要的指导意义。Diethyldithiocarbamate (diethyldithiocarbamate, DDC) induced chronic pancreatitis rat model fibrosis can simulate the process of chronic pancreatitis disease (see Naoki Matsumura et al., Study onFree Radicals and Pancreatic Fibrosis-Pancreatic Fibrosis Induced by Repeated Injections of Superoxide Dismutase Inhibitor Panereas, 2001, 22; 53-57). Observe the overall changes of pancreatic fibrosis from normal, early fibrosis, fibrosis progression, and its pathological process and pathological features are similar to human chronic pancreatitis. Intraperitoneal injection of DDC induced pancreatic injury in rats in a gradual process with good reproducibility. Using this animal model to simulate the pathogenesis of chronic pancreatitis has important guiding significance for clinical early diagnosis and monitoring of disease progression.
在本申请中,采用二乙基二硫代氨基甲酸钠(DDC)腹腔注射法诱导大鼠慢性胰腺炎动物模型,本申请收集慢性胰腺炎大鼠在早期阶段(第14天)和中晚阶段(第21天、28天)的尿液。利用该动物模型模拟慢性胰腺炎,对临床上慢性胰腺炎的早期诊断、治疗和预后有重要的指导意义。In this application, the animal model of rat chronic pancreatitis is induced by intraperitoneal injection of sodium diethyldithiocarbamate (DDC). 21st day, 28th day) urine. Using this animal model to simulate chronic pancreatitis has important guiding significance for the early diagnosis, treatment and prognosis of clinical chronic pancreatitis.
1.材料与试剂1. Materials and Reagents
1)仪器:1) Instrument:
大鼠代谢笼:购自北京佳源兴业科技有限公司。Thermo orbitrap fusion lumos质谱仪:购自Thermo Fisher Scientific公司;Thermo EASY-Nlc1200高效液相色谱仪:购自Thermo Fisher Scientific公司;MillliQ RG超纯水系统:购自Millipore公司;C18反相分析柱(RP柱,0.1×150mm,3μm,):购自Michrom Bioresources公司。Rat metabolic cage: purchased from Beijing Jiayuan Xingye Technology Co., Ltd. Thermo orbitrap fusion lumos mass spectrometer: purchased from Thermo Fisher Scientific; Thermo EASY-Nlc1200 high-performance liquid chromatography: purchased from Thermo Fisher Scientific; MillliQ RG ultrapure water system: purchased from Millipore; C18 reversed-phase analytical column (RP Column, 0.1×150mm, 3μm, ): purchased from Michrom Bioresources.
2)主要试剂:2) Main reagents:
二乙基二硫代氨基甲酸钠(diethyldithiocarbamate,DDC)从Sigma公司购买;去离子水来源于MillliQ RG超纯水系统;色谱级乙腈、甲酸和甲醇为Fisher公司生产;碘乙酰铵(IAA)、碳酸氢铵、二硫苏糖醇(DTT)从Merck公司购买;测序级胰酶从Sigma公司购买。Diethyldithiocarbamate (DDC) was purchased from Sigma; deionized water was from MillliQ RG ultrapure water system; chromatographic grade acetonitrile, formic acid and methanol were produced by Fisher; iodoacetamide (IAA), carbonic acid Ammonium hydrogen and dithiothreitol (DTT) were purchased from Merck; sequencing-grade trypsin was purchased from Sigma.
3)动物:3) Animals:
雄性Wistar大鼠(体重180至200g)购自北京维通利华实验动物技术有限公司,在标准饲养环境中饲养。Male Wistar rats (body weight 180 to 200 g) were purchased from Beijing Weitong Lihua Experimental Animal Technology Co., Ltd. and raised in a standard feeding environment.
2.实验方法2. Experimental method
1)慢性胰腺炎大鼠模型建立以及样品收集:1) Establishment of chronic pancreatitis rat model and sample collection:
慢性胰腺炎大鼠模型建立步骤:用无菌1mL注射器腹腔注射,根据大鼠体重,注射DDC量为500mg/kg。Steps for establishing rat model of chronic pancreatitis: intraperitoneal injection with a sterile 1mL syringe, according to the weight of the rat, the amount of DDC injected is 500mg/kg.
对照组的大鼠模型建立步骤:用无菌1mL注射器腹腔注射,根据大鼠体重,注射生理盐水量为500mg/kg。Steps for establishing the rat model of the control group: intraperitoneal injection with a sterile 1mL syringe, and injecting 500 mg/kg of normal saline according to the weight of the rat.
样品收集流程:在造模之前,将大鼠置于代谢笼中收集正常尿液,造模过程中第7天、14天、21天、28天将大鼠置于代谢笼中收集尿液样本。Sample collection process: Before modeling, rats were placed in metabolic cages to collect normal urine, and rats were placed in metabolic cages to collect urine samples on the 7th, 14th, 21st, and 28th days during the modeling process .
2)指标检测:2) Indicator detection:
体重监测:每次注射DDC前测量大鼠的体重。Body weight monitoring: The body weight of the rats was measured before each injection of DDC.
胰腺组织病理学:在造模第7、14、21、28、42天,将实施例1中的部分大鼠安乐死并取大鼠胰腺组织。将胰腺从每个动物中取出,并在4℃下在4%甲醛通过浸入固定。切片,后用H&E染色和Masson染色观察胰腺组织发生的变化。Pancreatic histopathology: On the 7th, 14th, 21st, 28th, and 42nd day of modeling, some rats in Example 1 were euthanized and the rat pancreatic tissues were obtained. The pancreas was removed from each animal and fixed by immersion in 4% formaldehyde at 4 °C. After sectioning, H&E staining and Masson staining were used to observe the changes of pancreatic tissue.
实施例2Example 2
1.尿蛋白提取与保存:1. Urinary protein extraction and storage:
尿液于4℃2000g离心30分钟,取上清,置于新EP管内,继续12000g 4℃离心30分钟;取上清,-80℃保存。The urine was centrifuged at 2000g at 4°C for 30 minutes, the supernatant was taken, placed in a new EP tube, and centrifuged at 12000g at 4°C for 30 minutes; the supernatant was taken and stored at -80°C.
乙醇沉淀尿液蛋白,用Bradford法测蛋白浓度后进行膜上酶切,参见WisniewskiJR,Zougman A,Nagaraj N,Mann M.Universal sample preparation method forproteome analysis.Nature methods 2009;6:359-62。BCA法测量多肽浓度。Urine protein was precipitated with ethanol, and the protein concentration was measured by Bradford method, followed by enzyme digestion on the membrane. See WisniewskiJR, Zougman A, Nagaraj N, Mann M. Universal sample preparation method for proteome analysis. Nature methods 2009; 6:359-62. The BCA method was used to measure the concentration of peptides.
2.LC-MS/MS串联质谱分析:2. LC-MS/MS tandem mass spectrometry analysis:
将多肽样本用0.1%甲酸稀释成0.5μg/μl。多肽样本通过Thermo液相系统EASY-nLC 1200上样系统分离。洗脱时间120分钟,色谱柱流速为0.3μl/min。洗脱梯度为5%至40%流动相B(流动相A为:0.1%甲酸;流动相B为:89.9%乙腈)。洗脱下的肽段使用ThermoOrbitrap Lumos质谱仪进行分析。采用阳离子模式,母离子和子离子的分辨率为120000。Peptide samples were diluted to 0.5 μg/μl with 0.1% formic acid. Peptide samples were separated by Thermo liquid phase system EASY-nLC 1200 loading system. The elution time is 120 minutes, and the column flow rate is 0.3 μl/min. The elution gradient was 5% to 40% mobile phase B (mobile phase A: 0.1% formic acid; mobile phase B: 89.9% acetonitrile). The eluted peptides were analyzed using a ThermoOrbitrap Lumos mass spectrometer. In positive ion mode, the resolution of precursor and product ions is 120,000.
3.数据库检索:3. Database search:
所有质谱结果用mascot软件进行数据库检索。所用数据库为Swiss-Prot ratdatabase。检索条件为:胰酶酶切;允许有2个漏切位点;半胱氨酸为固定修饰;蛋氨酸的氧化和蛋白质N-末端乙酰化是可变修饰。Thermo orbitrap fusion lumos数据质谱数据检索容许误差为:母离子0.05Da,子离子0.05Da。All mass spectrometry results were searched in the database using mascot software. The database used is the Swiss-Prot ratdatabase. The search conditions are: trypsin digestion; 2 missed cleavage sites are allowed; cysteine is a fixed modification; methionine oxidation and protein N-terminal acetylation are variable modifications. Thermo orbitrap fusion lumos data mass spectrometry data retrieval allowable error: parent ion 0.05Da, product ion 0.05Da.
4.相对定量分析结果:4. Relative quantitative analysis results:
所有质谱结果通过初级LC-MS/MS软件进行相对定量结果分析。软件操作根据文献中所示方法使用(参见Hauck SM,Dietter J,Kramer RL等人.Deciphering membrane-associated molecular processes in target tissue of autoimmune uveitis bylabel-free quantitative mass spectrometry.Molecular&cellular proteomics:MCP2010;9:2292-305)。All mass spectrometry results were analyzed by primary LC-MS/MS software for relative quantitative results. Software operations were used according to methods indicated in the literature (see Hauck SM, Dietter J, Kramer RL et al. Deciphering membrane-associated molecular processes in target tissue of autoimmune uveitis by label-free quantitative mass spectrometry. Molecular & cellular proteomics: MCP2010; 9: 2292- 305).
5.统计分析:5. Statistical analysis:
将不同时间点的蛋白组数据进行统计分析,筛选出于造模前0天相比谱图数变化倍数在2倍以上,p值小于0.05的蛋白作为差异蛋白。Statistical analysis was performed on the proteome data at different time points, and the proteins with a p-value less than 0.05 were selected as differential proteins with a fold change of more than 2 times compared with the number of spectra on day 0 before modeling.
6.实验结果:6. Experimental results:
(1)体重变化(1) Weight change
如图1所示,从第10天起实验组的体重低于对照组,并且实验组与对照组体重有明显的统计学差异(图1)。As shown in Figure 1, the body weight of the experimental group was lower than that of the control group from day 10, and there was a significant statistical difference between the experimental group and the control group (Figure 1).
(2)病理检测结果(2) Pathological test results
如图2A至2E,HE染色结果显示:对照组,显示正常的组织结构(图2A);DDC诱导慢性胰腺炎大鼠实验组,问质不同程度的水肿、增宽、炎性细胞细胞浸润、部分出现胰腺实质坏死、出血、胰腺导管壁增厚和细胞增多。并随着时间的推进程度加深(图2B至2E)。As shown in Figures 2A to 2E, the results of HE staining showed: the control group showed normal tissue structure (Figure 2A); the DDC-induced chronic pancreatitis rat experimental group showed varying degrees of edema, widening, inflammatory cell infiltration, Pancreatic parenchymal necrosis, hemorrhage, pancreatic ductal wall thickening, and hypercellularity occurred in some cases. and deepened over time (Fig. 2B to 2E).
如图3,马松(Masson’s trichrome staining)染色结果显示,对照组,显示正常的组织结构(图3A);DDC诱导慢性胰腺炎大鼠实验组在21天开始,胰腺小叶和间隔不同程度的纤维组织增生,并随着时间的推进胰腺纤维化程度不断进展(图3B至3D),说明造模成功。As shown in Figure 3, the results of Masson's trichrome staining showed that the control group showed normal tissue structure (Figure 3A); the experimental group of rats with DDC-induced chronic pancreatitis started at day 21, and the pancreatic lobule and septum had different degrees of fiber The tissue proliferated and the degree of pancreatic fibrosis progressed over time (Fig. 3B to 3D), indicating that the modeling was successful.
(3)对照组和慢性胰腺炎组大鼠(n=3)的尿液经过质谱鉴定,分别进行2次技术重复。在FDR小于1%的水平,基于两肽以上鉴定的蛋白为557个。(3) The urine of the rats (n=3) in the control group and the chronic pancreatitis group was identified by mass spectrometry, and two technical repetitions were performed respectively. At the level of FDR less than 1%, 557 proteins were identified based on more than two peptides.
与0天蛋白定量的谱图数进行比对,筛选出其他时间点变化倍数在2倍以上及重复测量ANOVA p值小于0.05的差异蛋白,同时使用Uniprot数据库将大鼠蛋白转化为相应的人同源蛋白。Compared with the number of protein quantification spectra on day 0, the differential proteins with a change fold of more than 2 times at other time points and a repeated measurement ANOVA p value of less than 0.05 were screened out, and the rat protein was converted into the corresponding human homogeneous protein using the Uniprot database source protein.
与对照组的相比,慢性胰腺炎14天组尿中的大鼠差异蛋白为21个、慢性胰腺炎21天组尿中的大鼠差异蛋白为32个、慢性胰腺炎28天组尿中的大鼠差异蛋白为40个。Compared with the control group, there were 21 differential proteins in the urine of the 14-day chronic pancreatitis group, 32 differential proteins in the urine of the 21-day chronic pancreatitis group, and 32 differential proteins in the urine of the 28-day chronic pancreatitis group. There are 40 differential proteins in rats.
将不同时间点的慢性胰腺炎模型与对照组大鼠尿蛋白进行比较,经过ANOVA统计学分析以及变化倍数筛选,可靠的差异蛋白人同源的有52个,分别为:CD48抗原、Igγ-1链C区、L-乳酸脱氢酶B链、Na(+)/H(+)交换调节因子nhe-rf3、Thy-1膜糖蛋白、T-激肽原2、V型质子ATP酶亚单位S1、α2-巯基糖蛋白、β-2-微球蛋白、氨基酰化酶-1A、白介素-4受体α亚单位、半胱氨酸蛋白酶抑制剂-B、巢蛋白-2、淀粉样βA4蛋白、多聚免疫球蛋白受体、二肽基肽酶2、分拣蛋白、分泌型焦磷酸蛋白24、钙粘蛋白-2、谷氨酰胺基肽酶、谷氨酰半胱氨酸合成酶催化亚单位、核连蛋白-2、黄曲霉素B1醛还原酶3、肌动蛋白胞质1、基质-重构-相关蛋白8、甲基多巴Aβ亚基、胶原C-肽链内切酶增强子1、聚糖蛋白-3、聚糖核心蛋白、醌氧化还原酶、磷蛋白质分泌24、磷酸甘油酸酯变位酶1、磷酸赖氨酸磷酸组氨酸亚磷酸无机焦磷酸磷酸酶、硫酸软骨素蛋白多糖4、氯胞内通道蛋白1、钠依赖的中性氨基酸载体B(0)AT3、内皮细胞选择性粘附分子、凝血素、前列腺腺激肽释放酶-6、线粒体犬尿氨酸/α氨基乙二酸转氨酶、软骨低聚物基质蛋白、神经细胞黏附分子1、生长抑制蛋白6、双糖链蛋白多糖、碳酸酐酶1、唾液酸O-乙酰酯酶、纤连蛋白、血清淀粉样p物质、乙醇脱氢酶(辅酶Ⅱ(+))、中性和碱性氨基酸运输蛋白质rBAT、组织α-左旋岩藻糖苷酶。Comparing the urine protein of the chronic pancreatitis model at different time points with that of the control group rats, after ANOVA statistical analysis and multiple change screening, there are 52 reliable differential proteins that are homologous to humans, namely: CD48 antigen, Igγ-1 Chain C region, L-lactate dehydrogenase B chain, Na(+)/H(+) exchange regulator nhe-rf3, Thy-1 membrane glycoprotein, T-kininogen 2, V-type proton ATPase subunit S1, α2-thiol glycoprotein, β-2-microglobulin, aminoacylase-1A, interleukin-4 receptor α subunit, cystatin-B, nestin-2, amyloid βA4 protein, polyimmunoglobulin receptor, dipeptidyl peptidase 2, sortilin, secreted pyrophosphoprotein 24, cadherin-2, glutaminyl peptidase, glutamyl cysteine synthetase Catalytic subunit, nucleonectin-2, aflatoxin B1 aldehyde reductase 3, actin cytoplasm 1, matrix-remodeling-associated protein 8, methyldopa Aβ subunit, collagen C-peptide chain Dicer enhancer 1, glycan protein-3, glycan core protein, quinone oxidoreductase, phosphoprotein secretion 24, phosphoglycerate mutase 1, phospholysine phosphohistidine phosphite inorganic pyrophosphate phosphate Enzymes, chondroitin sulfate proteoglycan 4, chloride intracellular channel protein 1, sodium-dependent neutral amino acid carrier B(0)AT3, endothelial cell selective adhesion molecule, prothrombin, prostatic gland kallikrein-6, mitochondria Kynurenine/α-aminooxalate transaminase, cartilage oligomer matrix protein, neuronal cell adhesion molecule 1, growth inhibitory protein 6, biglycan, carbonic anhydrase 1, sialic acid O-acetylesterase, fiber Zonulin, serum amyloid substance p, alcohol dehydrogenase (coenzyme II (+)), neutral and basic amino acid transport protein rBAT, tissue α-L-fucosidase.
相较于健康对照,慢性胰腺炎组中表达水平提高的尿蛋白共7个,分别为Igγ-1链C区、T-激肽原2、β-2-微球蛋白、多聚免疫球蛋白受体、核连蛋白-2、前列腺腺激肽释放酶-6、碳酸酐酶1。Compared with the healthy control group, there were 7 urinary proteins with increased expression levels in the chronic pancreatitis group, including Igγ-1 chain C region, T-kininogen 2, β-2-microglobulin, polyimmunoglobulin Receptors, Nucleonectin-2, Prostatic Gland Kallikrein-6, Carbonic Anhydrase-1.
相较于健康对照,慢性胰腺炎组中表达水平降低的尿蛋白的45个,分别为CD48抗原、L-乳酸脱氢酶B链、Na(+)/H(+)交换调节因子nhe-rf3、Thy-1膜糖蛋白、V型质子ATP酶亚单位S1、α2-巯基糖蛋白、氨基酰化酶-1A、白介素-4受体α亚单位、半胱氨酸蛋白酶抑制剂-B、巢蛋白-2、淀粉样βA4蛋白、二肽基肽酶2、分拣蛋白、分泌型焦磷酸蛋白24、钙粘蛋白-2、谷氨酰胺基肽酶、谷氨酰半胱氨酸合成酶催化亚单位、黄曲霉素B1醛还原酶3、肌动蛋白胞质1、基质-重构-相关蛋白8、甲基多巴Aβ亚基、胶原C-肽链内切酶增强子1、聚糖蛋白-3、聚糖核心蛋白、醌氧化还原酶、磷蛋白质分泌24、磷酸甘油酸酯变位酶1、磷酸赖氨酸磷酸组氨酸亚磷酸无机焦磷酸磷酸酶、硫酸软骨素蛋白多糖4、氯胞内通道蛋白1、钠依赖的中性氨基酸载体B(0)AT3、内皮细胞选择性粘附分子、凝血素、线粒体犬尿氨酸/α氨基乙二酸转氨酶、软骨低聚物基质蛋白、神经细胞黏附分子1、生长抑制蛋白6、双糖链蛋白多糖、唾液酸O-乙酰酯酶、纤连蛋白、血清淀粉样p物质、乙醇脱氢酶(辅酶Ⅱ(+))、中性和碱性氨基酸运输蛋白质rBAT、组织α-左旋岩藻糖苷酶。Compared with the healthy control group, 45 urine proteins with reduced expression levels in the chronic pancreatitis group were CD48 antigen, L-lactate dehydrogenase B chain, Na(+)/H(+) exchange regulator nhe-rf3 , Thy-1 membrane glycoprotein, V-type proton ATPase subunit S1, α2-thiol glycoprotein, aminoacylase-1A, interleukin-4 receptor α subunit, cystatin-B, nest Catalyzed by protein-2, amyloid-βA4 protein, dipeptidyl peptidase 2, sortilin, secreted pyrophosphoprotein 24, cadherin-2, glutaminyl peptidase, glutamyl cysteine synthetase subunit, aflatoxin B1 aldehyde reductase 3, actin cytoplasm 1, matrix-remodeling-associated protein 8, methyldopa Aβ subunit, collagen C-endopeptidase enhancer 1, poly Glycoprotein-3, glycan core protein, quinone oxidoreductase, phosphoprotein secretion 24, phosphoglycerate mutase 1, phospholysine phosphohistidine phosphite inorganic pyrophosphate phosphatase, chondroitin sulfate proteoglycan 4. Chloride intracellular channel protein 1, sodium-dependent neutral amino acid carrier B(0)AT3, endothelial cell selective adhesion molecule, prothrombin, mitochondrial kynurenine/α-aminoethanedioic acid transaminase, cartilage oligomer Matrix protein, neural cell adhesion molecule 1, growth inhibitory protein 6, biglycan, sialic acid O-acetyl esterase, fibronectin, serum amyloid substance P, alcohol dehydrogenase (coenzyme II (+)), Neutral and basic amino acid transport protein rBAT, tissue α-L-fucosidase.
由于在建模后第14天,慢性胰腺炎组和对照组大鼠病理检测与对照组相比未出现显著差异。因此,在慢性胰腺炎早期(造模14天)筛选出差异蛋白14个(表1)。转化为人同源蛋白后,在慢性胰腺炎早期,Igγ-1链C区、核连蛋白-2和β-2-微球蛋白的表达水平提高;白介素-4受体α亚单位、磷酸甘油酸酯变位酶1、二肽基肽酶2、分泌型焦磷酸蛋白24、聚糖核心蛋白、内皮细胞选择性粘附分子、巢蛋白-2、血清淀粉样p物质、神经细胞黏附分子1、磷酸赖氨酸磷酸组氨酸亚磷酸无机焦磷酸磷酸酶、软骨低聚物基质蛋白表达量降低。Because on the 14th day after modeling, there was no significant difference in the pathological detection of the rats in the chronic pancreatitis group and the control group compared with the control group. Therefore, 14 differential proteins were screened out in the early stage of chronic pancreatitis (14 days after modeling) (Table 1). After conversion to human homologous proteins, the expression levels of Igγ-1 chain C region, nucleonectin-2 and β-2-microglobulin are increased in the early stage of chronic pancreatitis; interleukin-4 receptor α subunit, phosphoglycerate Estermutase 1, dipeptidyl peptidase 2, secreted pyrophosphoprotein 24, glycan core protein, endothelial cell selective adhesion molecule, nestin-2, serum amyloid substance p, neural cell adhesion molecule 1, The expression of phospholysine phosphohistidine phosphite inorganic pyrophosphate phosphatase and cartilage oligomer matrix protein decreased.
其中,有11个差异蛋白,分别为:磷酸甘油酸酯变位酶1、二肽基肽酶2、分泌型焦磷酸蛋白24、聚糖核心蛋白、内皮细胞选择性粘附分子、巢蛋白-2、血清淀粉样p物质、神经细胞黏附分子1、磷酸赖氨酸磷酸组氨酸亚磷酸无机焦磷酸磷酸酶、软骨低聚物基质蛋白、β-2-微球蛋白在慢性胰腺炎的其他阶段也有明显差异(表2),说明了这些蛋白作为疾病早期诊断的可靠性。Among them, there are 11 differential proteins, namely: phosphoglycerate mutase 1, dipeptidyl peptidase 2, secreted pyrophosphoprotein 24, glycan core protein, endothelial cell selective adhesion molecule, nestin- 2. Serum amyloid substance P, nerve cell adhesion molecule 1, phospholysine phosphohistidine phosphite inorganic pyrophosphate phosphatase, cartilage oligomer matrix protein, β-2-microglobulin in other patients with chronic pancreatitis There were also significant differences in the stages (Table 2), illustrating the reliability of these proteins as an early diagnosis of the disease.
表1.慢性胰腺炎早期诊断的尿液蛋白标志物Table 1. Urine protein markers for early diagnosis of chronic pancreatitis
由于在建模后第21天开始,慢性胰腺炎组相比对照组大鼠病理Masson染色出现明显纤维化。因此,对第14、21和28天的慢性胰腺炎组被重复鉴定到质谱差异蛋白进行汇总,可以用于检测慢性胰腺炎的病情进展(表2)。Since the 21st day after modeling, the pathological Masson staining of rats in the chronic pancreatitis group showed obvious fibrosis compared with the control group. Therefore, the group of chronic pancreatitis on the 14th, 21st and 28th day was repeatedly identified to summarize the mass spectrometric differential proteins, which can be used to detect the progression of chronic pancreatitis (Table 2).
和健康对照中的蛋白水平相比较,β-2-微球蛋白和T-激肽原2、碳酸酐酶1、多聚免疫球蛋白受体的表达水平提高;Increased expression levels of β-2-microglobulin and T-kininogen 2, carbonic anhydrase 1, polyimmunoglobulin receptor compared with protein levels in healthy controls;
和健康对照中的蛋白水平相比较,聚糖核心蛋白、磷酸甘油酸酯变位酶1、二肽基肽酶2、内皮细胞选择性粘附分子、巢蛋白-2、血清淀粉样p物质、磷蛋白质分泌24、神经细胞黏附分子1、磷酸赖氨酸磷酸组氨酸亚磷酸无机焦磷酸磷酸酶、软骨低聚物基质蛋白、CD48抗原、聚糖蛋白-3、基质-重构-相关蛋白8、淀粉样βA4蛋白、硫酸软骨素蛋白多糖4、Thy-1膜糖蛋白、纤连蛋白、α2-巯基糖蛋白、组织α-左旋岩藻糖苷酶、肌动蛋白胞质1、生长抑制蛋白6、凝血素、醌氧化还原酶、中性和碱性氨基酸运输蛋白质rBAT、甲基多巴Aβ亚基、线粒体犬尿氨酸/a-氨基乙二酸转氨酶的表达水平降低。Glycan core protein, phosphoglycerate mutase 1, dipeptidyl peptidase 2, endothelial cell selective adhesion molecule, nestin-2, serum amyloid substance p, Phosphoprotein Secretion 24, Neural Cell Adhesion Molecule 1, Phospholysine Phosphohistidine Phosphite Inorganic Pyrophosphate Phosphatase, Cartilage Oligomer Matrix Protein, CD48 Antigen, Glycan Protein-3, Matrix-Remodeling-Associated Protein 8. Amyloid βA4 protein, chondroitin sulfate proteoglycan 4, Thy-1 membrane glycoprotein, fibronectin, α2-thiol glycoprotein, tissue α-L-fucosidase, actin cytoplasm 1, growth inhibitory protein 6. The expression levels of prothrombin, quinone oxidoreductase, neutral and basic amino acid transport protein rBAT, methyldopa Aβ subunit, and mitochondrial kynurenine/a-aminooxalate transaminase decreased.
表2.在慢性胰腺炎进展过程中蛋白表达水平的变化Table 2. Changes in protein expression levels during the progression of chronic pancreatitis
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| CN110376271A (en) * | 2018-04-12 | 2019-10-25 | 北京师范大学 | The screening and application thereof of the relevant urine protein marker of Crohn disease |
| CN109917063A (en) * | 2019-04-15 | 2019-06-21 | 德阳市人民医院 | A kind of metabolic markers relevant to acute pancreatitis |
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