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CN107058623A - A kind of High sensitivity and special blood HBV pgRNA fluorescence quantitative PCR detections systems and detection method - Google Patents

A kind of High sensitivity and special blood HBV pgRNA fluorescence quantitative PCR detections systems and detection method Download PDF

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CN107058623A
CN107058623A CN201710213191.3A CN201710213191A CN107058623A CN 107058623 A CN107058623 A CN 107058623A CN 201710213191 A CN201710213191 A CN 201710213191A CN 107058623 A CN107058623 A CN 107058623A
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鲁凤民
王杰
陈然
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Abstract

本发明公开了一种血液乙型肝炎病毒(HBV)前基因组RNA(pregenome RNA,pgRNA)荧光定量PCR检测体系,以及利用该检测体系对HBV pgRNA进行检测的方法。所述检测体系包括正向引物,其核苷酸序列如SEQ NO:1所示;反向引物,其核苷酸序列如SEQ NO:2所示;带有随机锚定序列的逆转录引物,其核苷酸序列如SEQ NO:3所示;以及探针,其核苷酸序列如SEQ NO:4所示。采用本发明的检测体系和方法,可用于制备HBV诊断试剂或试剂盒。本发明排除了在检测过程中HBV DNA或其他RNA带来的可能干扰,确保了血液HBV pgRNA检测的特异性。

The invention discloses a blood hepatitis B virus (HBV) pregenome RNA (pregenome RNA, pgRNA) fluorescent quantitative PCR detection system and a method for detecting the HBV pgRNA by using the detection system. The detection system includes a forward primer, whose nucleotide sequence is shown in SEQ NO:1; a reverse primer, whose nucleotide sequence is shown in SEQ NO:2; a reverse transcription primer with a random anchor sequence, Its nucleotide sequence is shown in SEQ NO:3; and the probe, its nucleotide sequence is shown in SEQ NO:4. The detection system and method of the invention can be used to prepare HBV diagnostic reagents or kits. The invention eliminates the possible interference caused by HBV DNA or other RNA during the detection process, and ensures the specificity of blood HBV pgRNA detection.

Description

一种高度灵敏和特异的血液HBV pgRNA荧光定量PCR检测体系 和检测方法A highly sensitive and specific blood HBV pgRNA fluorescent quantitative PCR detection system and detection method

技术领域technical field

本发明一般涉及乙型病毒性肝炎的诊断和治疗,以及感染病学、分子生物学、细胞生物学等领域。更具体地,本发明涉及一种血液中乙型肝炎病毒(Hepatitis B virus,HBV)pgRNA的荧光定量PCR检测方法。The present invention generally relates to the diagnosis and treatment of viral hepatitis B, as well as the fields of infectious disease, molecular biology, cell biology and the like. More specifically, the present invention relates to a fluorescent quantitative PCR detection method for hepatitis B virus (Hepatitis B virus, HBV) pgRNA in blood.

背景技术Background technique

乙型肝炎病毒(Hepatitis B virus,HBV)感染呈世界流行,但不同地区HBV感染的流行强度差异很大。我国属于HBV感染中高流行地区。2006年全国HBV血液流行病学调查显示,我国1~59岁一般人群中HBsAg携带率为7.18%。据此推算,我国慢性HBV感染者约为9300万人,其中慢性乙型肝炎(慢乙肝)患者约2000万例。在我国,慢性HBV感染与肝硬化、肝癌等终末期肝病的发生密切相关。目前治疗慢乙肝的药物主要为干扰素和核苷(酸)类似物两类。两类药物均可高效抑制HBV复制,但由于肝细胞内共价闭合环状DNA(Covalentlyclosed circular DNA,cccDNA)的持续存在,使得目前慢乙肝治疗的临床治愈率很低(<5%),停药后慢乙肝复发率较高,因此慢乙肝患者需要长期甚至终身服药。长期服药会给患者甚至社会带来极大的负担,并且在治疗过程中有可能会导致HBV耐药株的出现。基于此,目前迫切需要一种更加灵敏和精确的血液学指标,用于监测慢乙肝治疗的疗效和安全停药。Hepatitis B virus (HBV) infection is prevalent in the world, but the epidemic intensity of HBV infection varies greatly in different regions. my country belongs to the high prevalence area of HBV infection. The national HBV blood epidemiological survey in 2006 showed that the HBsAg carrier rate among the general population aged 1-59 in my country was 7.18%. Based on this calculation, there are about 93 million chronic HBV-infected people in my country, including about 20 million chronic hepatitis B (chronic hepatitis B) patients. In my country, chronic HBV infection is closely related to the occurrence of end-stage liver diseases such as liver cirrhosis and liver cancer. Currently, there are two main types of drugs for the treatment of chronic hepatitis B: interferon and nucleoside (acid) analogues. Both types of drugs can efficiently inhibit HBV replication, but due to the persistence of covalently closed circular DNA (cccDNA) in liver cells, the current clinical cure rate of chronic hepatitis B treatment is very low (<5%), stop The recurrence rate of chronic hepatitis B after taking medicine is high, so patients with chronic hepatitis B need to take medicine for a long time or even for life. Long-term medication will bring great burden to patients and even the society, and may lead to the emergence of HBV drug-resistant strains in the course of treatment. Based on this, there is an urgent need for a more sensitive and accurate hematological index for monitoring the efficacy of CHB treatment and safe drug withdrawal.

多篇文章已经证实血液中存在HBV RNA,具体的,HBV RNA可以存在于血清和/或血浆中,并且其水平与慢乙肝治疗的疗效和预后密切相关。然而,目前用于检测血液HBV RNA的荧光定量PCR方法的灵敏度和特异度均有待改善。发明人在前期研究中系统证实了血液中HBV RNA的存在形式和产生机制,其是存在于核衣壳内的HBV Pregenome RNA(pgRNA)在未经逆转录或不完全逆转录的情况下分泌至细胞外的。由此可见,血液中的HBV RNA实际上为pgRNA。定量检测血液HBV pgRNA的水平可更好地监测肝细胞内HBV cccDNA的水平,不失为一种良好的检测慢乙肝治疗疗效和安全停药的预测指标。开发定量检测血液中pgRNA的诊断试剂或试剂盒对于临床上慢乙肝的有效治疗和安全停药具有重要的指导意义。Many articles have confirmed the presence of HBV RNA in blood, specifically, HBV RNA can exist in serum and/or plasma, and its level is closely related to the curative effect and prognosis of chronic hepatitis B treatment. However, the sensitivity and specificity of the current fluorescent quantitative PCR method for detecting blood HBV RNA need to be improved. The inventor systematically confirmed the existence form and production mechanism of HBV RNA in the blood in previous studies, which is that the HBV Pregenome RNA (pgRNA) present in the nucleocapsid is secreted to the extracellular. Thus, the HBV RNA in the blood is actually pgRNA. Quantitative detection of the level of HBV pgRNA in blood can better monitor the level of HBV cccDNA in hepatocytes, which is a good predictor for detecting the curative effect of chronic hepatitis B treatment and safe drug withdrawal. The development of diagnostic reagents or kits for the quantitative detection of pgRNA in blood has important guiding significance for the effective treatment of chronic hepatitis B and safe drug withdrawal in clinical practice.

发明内容Contents of the invention

本发明一方面提供了一种血液HBV pgRNA荧光定量PCR检测体系包括:正向引物,其核苷酸序列如SEQ NO:1所示;反向引物,其核苷酸序列如SEQ NO:2所示;以及反向锚定引物,其核苷酸序列如SEQ NO:3所示。One aspect of the present invention provides a blood HBV pgRNA fluorescence quantitative PCR detection system comprising: a forward primer, its nucleotide sequence is shown in SEQ NO:1; a reverse primer, its nucleotide sequence is shown in SEQ NO:2 and the reverse anchor primer, its nucleotide sequence is shown in SEQ NO:3.

其中,正向引物SEQ NO:1为AGACCACCAAATGCCCCT;反向引物SEQ NO:2为(N)16-30。(N)16-30是指作为随机锚定序列的核苷酸序列,N可为A、T、C或G,且下角标处16-30表示碱基数目。反向锚定引物SEQ NO:3为(N)16-30-AGGCGAGGGAGTTCTTCTTCTA。SEQ NO:2和SEQNO:3中的(N)16-30表示相同的随机锚定序列。本领域技术人员知晓,虽然(N)16-30为随机序列,但为了保证扩增的效率,其应避免设计成为与HR-F或Probe-HR形成引物二聚体。此外,为了增加扩增的效率,在引物两端添加随机碱基后形成的引物序列也涵盖在本发明中。Wherein, the forward primer SEQ NO:1 is AGACCACCCAAATGCCCCT; the reverse primer SEQ NO:2 is (N)16-30. (N) 16-30 refers to the nucleotide sequence as a random anchor sequence, N can be A, T, C or G, and the subscript 16-30 represents the number of bases. The reverse anchor primer SEQ NO:3 is (N)16-30-AGGCGAGGGAGTTTCTTCTTCTA. (N)16-30 in SEQ NO:2 and SEQ NO:3 represent the same random anchor sequence. Those skilled in the art know that although (N)16-30 is a random sequence, in order to ensure the efficiency of amplification, it should be designed to avoid forming a primer dimer with HR-F or Probe-HR. In addition, in order to increase the amplification efficiency, the primer sequence formed by adding random bases at both ends of the primer is also included in the present invention.

在本发明的一些实施例中,血液HBV pgRNA荧光定量PCR检测体系还包括探针,其核苷酸序列如SEQ NO:4所示。其中,探针SEQ NO:4为CAACACTTCCGGARACTACTGTTGTTAGACG。In some embodiments of the present invention, the blood HBV pgRNA fluorescent quantitative PCR detection system further includes a probe, the nucleotide sequence of which is shown in SEQ NO:4. Wherein, the probe SEQ NO:4 is CAACACTTCCGGARACTACTGTTGTTAGACG.

在本发明的一些具体实施例中,血液HBV pgRNA荧光定量PCR检测体系中,所述探针为TaqMan探针、MGB探针、杂交探针中的一种。标记所述探针5’端的是一种荧光发光基团,其是FAM、VIC、TET、JOE、ROX、CY3、CY5、HEX中的一种;并且标记所述探针3’端的是一种荧光猝灭基团,其是BHQ1、BHQ2、BHQ3、TAMRA、DABCYL、NFQ中的一种。In some specific embodiments of the present invention, in the blood HBV pgRNA fluorescence quantitative PCR detection system, the probe is one of TaqMan probe, MGB probe and hybridization probe. Labeling the 5' end of the probe is a fluorescent luminescent group, which is one of FAM, VIC, TET, JOE, ROX, CY3, CY5, HEX; and labeling the 3' end of the probe is a The fluorescence quenching group is one of BHQ1, BHQ2, BHQ3, TAMRA, DABCYL, and NFQ.

本发明的另一方面还提供了如前所述的血液HBV pgRNA荧光定量PCR检测体系在制备HBV诊断试剂或试剂盒中的应用。Another aspect of the present invention also provides the application of the aforementioned blood HBV pgRNA fluorescent quantitative PCR detection system in the preparation of HBV diagnostic reagents or kits.

本发明的又一方面还提供了一种血液HBV pgRNA荧光定量PCR检测方法,包括:Another aspect of the present invention also provides a blood HBV pgRNA fluorescent quantitative PCR detection method, comprising:

步骤1.以待测血液HBV pgRNA为模板,用序列如SEQ NO:3的引物进行逆转录;Step 1. Using the blood HBV pgRNA to be tested as a template, reverse transcription is performed with a primer having a sequence such as SEQ NO: 3;

步骤2.以获得的逆转录产物为模板,用序列如SEQ NO:1和2的引物和序列如SEQNO:4的探针进行扩增,以定量检测血液中的HBV pgRNA。Step 2. The obtained reverse transcription product is used as a template, and the primers with sequences such as SEQ NO: 1 and 2 and the probe with sequence such as SEQ NO: 4 are used to amplify to quantitatively detect HBV pgRNA in blood.

在本发明的一些实施例中,步骤2还可以为以获得的逆转录产物为模板,用序列如SEQ NO:1和2的引物进行扩增,并掺入荧光染料,以SYBR Green法定量检测血液中的HBVpgRNA。In some embodiments of the present invention, step 2 can also use the obtained reverse transcription product as a template, use primers with sequences such as SEQ NO: 1 and 2 to amplify, incorporate fluorescent dyes, and use the SYBR Green method for quantitative detection HBV pgRNA in blood.

本发明的有益效果Beneficial effects of the present invention

本发明首次根据HBV pgRNA的特点在pgRNA的5’端设计了针对不同基因型HBV高度保守的特异性引物和探针,这样就排除了其它HBV RNA带来的可能干扰。除此之外,本发明还在逆转录引物上加上了一段人工设计的锚定序列用来排除在检测过程中HBV DNA带来的可能干扰,确保了血液HBV pgRNA检测的特异性。According to the characteristics of HBV pgRNA, the present invention designs highly conserved specific primers and probes for different genotypes of HBV at the 5' end of pgRNA for the first time, thus eliminating possible interference caused by other HBV RNAs. In addition, the present invention also adds an artificially designed anchor sequence to the reverse transcription primer to eliminate possible interference caused by HBV DNA during the detection process, thereby ensuring the specificity of blood HBV pgRNA detection.

本发明的特异性引物和探针可检测我国存在的所有基因型HBV,包括我国主要存在的B型和C型HBV、在我国新疆、西藏等地分布的D型HBV、以及散发分布的A型HBV。The specific primers and probes of the present invention can detect all genotypes of HBV existing in my country, including type B and type C HBV mainly existing in China, type D HBV distributed in Xinjiang, Tibet and other places in my country, and type A sporadically distributed HBV.

本发明的引物、探针和锚定序列是在最初设计的多条序列的基础上,通过多轮筛选和优化后确定的特异性和灵敏度最优的序列。The primers, probes and anchor sequences of the present invention are sequences with optimal specificity and sensitivity determined after multiple rounds of screening and optimization on the basis of initially designed multiple sequences.

附图说明Description of drawings

图1示出正方向引物,逆转录引物和对应的探针的设计,其中图1A通过MegAlign软件分析不同基因型HBV的保守序列,图1B和1C分别示出利用Primer Premier 5软件分析锚定序列(反方向引物)和正方向引物的发卡结构、二聚体和错配的分析情况。Fig. 1 shows the design of forward primer, reverse transcription primer and corresponding probe, wherein Fig. 1A analyzes the conserved sequences of different genotypes of HBV by MegAlign software, Fig. 1B and 1C show respectively and utilizes Primer Premier 5 software to analyze the anchor sequence (reverse direction primer) and forward direction primer hairpin structure, dimer and mismatch analysis.

图2示出利用本发明实施的血清HBV pgRNA荧光定量PCR检测体系对血液HBVpgRNA进行检测的流程图。Fig. 2 shows a flow chart of detecting blood HBV pgRNA by using the serum HBV pgRNA fluorescent quantitative PCR detection system implemented in the present invention.

图3A示出利用HR-F和HR-R扩增时的溶解曲线;图3B示出利用非专利文献1(vanF,et al.Serum Hepatitis B Virus RNA Levels as an Early Predictor ofHepatitis B Envelope Antigen Seroconversion During Treatment With PolymeraseInhibitors,Hepatology.2015;61:66-76.)中的引物扩增时的溶解曲线;图3C示出检测体系中探针用量对荧光定量PCR反应的影响,其中1为体系中加入0.6μl浓度为10μM的探针,2为体系中加入0.8μl浓度为10μM的探针,两者扩增曲线基本重叠;图3D示出检测体系中退火温度对荧光定量PCR反应的影响,其中分别利用56、58、60、62摄氏度的退火温度进行定量PCR反应,所得扩增曲线基本重叠。Fig. 3 A shows the melting curve when using HR-F and HR-R amplification; Fig. 3 B shows using non-patent literature 1 (van F, et al.Serum Hepatitis B Virus RNA Levels as an Early Predictor of Hepatitis B Envelope Antigen Seroconversion During Treatment With Polymerase Inhibitors, Hepatology.2015; 61:66-76.) The melting curve during primer amplification; Figure 3C shows The influence of the amount of probes in the detection system on the fluorescent quantitative PCR reaction, where 1 is the addition of 0.6 μl of probes with a concentration of 10 μM in the system, and 2 is the addition of 0.8 μl of probes with a concentration of 10 μM in the system, and the amplification curves of the two basically overlap ; Figure 3D shows the impact of the annealing temperature on the fluorescent quantitative PCR reaction in the detection system, where the annealing temperatures of 56, 58, 60, and 62 degrees Celsius were used for quantitative PCR reactions, and the obtained amplification curves basically overlapped.

图4示出诊断试剂标准品测序结果。Figure 4 shows the sequencing results of diagnostic reagent standard products.

图5示出本发明的荧光定量PCR检测方法的灵敏度检测,其中图5A示出不同终浓度质粒经过检测后的Ct值,图5B示出利用浓度和Ct值构建的标准曲线,图5C示出荧光定量PCR最终得到的扩增曲线。Fig. 5 shows the sensitivity detection of the fluorescent quantitative PCR detection method of the present invention, wherein Fig. 5A shows the Ct values after the detection of different final concentrations of plasmids, Fig. 5B shows a standard curve constructed using concentrations and Ct values, and Fig. 5C shows The amplification curve finally obtained by fluorescent quantitative PCR.

图6示出非专利文献1中报道的血清HBV RNA荧光定量检测方法的灵敏度评价,其中,图6A示出不同终浓度质粒经过检测后的Ct值,图6B示出利用浓度和Ct值构建的标准曲线,图6C示出荧光定量PCR最终得到的扩增曲线。Fig. 6 shows the sensitivity evaluation of the serum HBV RNA fluorescence quantitative detection method reported in Non-Patent Document 1, wherein, Fig. 6A shows the Ct values after the detection of different final concentration plasmids, and Fig. 6B shows the concentration and Ct values constructed using As for the standard curve, FIG. 6C shows the final amplification curve obtained by fluorescent quantitative PCR.

图7示出对不同基因型HBV pgRNA的水平检测,其中,图7A示出慢性乙肝患者血清中B基因型HBV的检测结果,图7B示出慢性乙肝患者血清中C基因型HBV的检测结果,图7C示出Hep AD38细胞上清的检测结果,该种细胞分泌产生D基因型HBV。Figure 7 shows the detection of different genotypes of HBV pgRNA levels, wherein Figure 7A shows the detection results of B genotype HBV in the serum of chronic hepatitis B patients, and Figure 7B shows the detection results of C genotype HBV in the serum of chronic hepatitis B patients, Fig. 7C shows the detection results of the supernatant of Hep AD38 cells, which secrete and produce D genotype HBV.

图8示出本发明的荧光定量PCR检测方法对HBV pgRNA的特异性评价,其中,图8A示出利用本发明的定量PCR体系检测不同的模板,其中1为将提取出的HBV核酸混合物经DnaseI处理后利用引物HR-RT进行逆转录后的产物;2为提取出的、未经处理的HBV核酸混合物;3为经Dnase I处理后的HBV核酸混合物,图8B示出正常人血液经过核酸提取、逆转录处理后进行定量检测的结果,其中4为慢性乙肝患者血清的阳性对照;5和6为正常人血清的检测结果。Figure 8 shows the specificity evaluation of the fluorescent quantitative PCR detection method of the present invention to HBV pgRNA, wherein, Figure 8A shows the use of the quantitative PCR system of the present invention to detect different templates, wherein 1 is that the extracted HBV nucleic acid mixture is subjected to DnaseI After treatment, the product after reverse transcription using primer HR-RT; 2 is the extracted, untreated HBV nucleic acid mixture; 3 is the HBV nucleic acid mixture after DNase I treatment. Figure 8B shows that normal human blood has been extracted from nucleic acid , the result of quantitative detection after reverse transcription treatment, wherein 4 is the positive control of serum of patients with chronic hepatitis B; 5 and 6 are the detection results of normal human serum.

图9示出质粒浓度为1×103copies/ml标准品的重复性检测结果。Figure 9 shows the repeatability detection results of the plasmid concentration of 1 × 103copies/ml standard.

具体实施方式detailed description

除非特别说明,本发明的术语具有本领域通常使用的含义。Unless otherwise specified, terms in the present invention have meanings commonly used in the art.

术语“核苷酸”旨在包括那些不仅含有已知的嘌呤和嘧啶碱基还含有经修饰的其他杂环碱基的部分。此类修饰包括甲基化嘌呤或嘧啶、酰化嘌呤或嘧啶、烷基化核糖或其他杂环化合物。此外,术语“核苷酸”包括那些含有半抗原或荧光标记以及可以不仅含有常规核糖和脱氧核糖还含有其他糖的部分。修饰的核苷或核苷酸还可以在糖部分上包含修饰,例如,其中一个或多个羟基被卤素原子或脂族基团取代,被官能化为醚、胺等等。The term "nucleotide" is intended to include those moieties that contain not only the known purine and pyrimidine bases but also modified other heterocyclic bases. Such modifications include methylated purines or pyrimidines, acylated purines or pyrimidines, alkylated ribose sugars or other heterocyclic compounds. Furthermore, the term "nucleotide" includes those moieties which contain haptens or fluorescent labels and which may contain not only conventional ribose and deoxyribose sugars but also other sugars. Modified nucleosides or nucleotides may also comprise modifications on the sugar moiety, for example, wherein one or more hydroxyl groups are replaced with halogen atoms or aliphatic groups, functionalized as ethers, amines, and the like.

术语“引物”是指长度通常为约20至30个碱基的、短的、化学合成的寡核苷酸。它们与靶DNA杂交,然后靶DNA通过DNA聚合酶复制产生互补的DNA链。“正向引物”和“反向引物”构成PCR中所用的“PCR引物组”,其中它们与互补的DNA链杂交,并指导向着彼此复制,分别产生上链和下链,导致靶DNA片段以指数增长。The term "primer" refers to a short, chemically synthesized oligonucleotide, typically about 20 to 30 bases in length. They hybridize to target DNA, which is then replicated by DNA polymerase to produce a complementary DNA strand. The "Forward Primer" and "Reverse Primer" make up the "PCR Primer Set" used in PCR, where they hybridize to complementary DNA strands and direct replication towards each other, creating the upper and lower strands, respectively, resulting in the target DNA fragment in the index increase.

根据本发明的方法包含对RNA的(优选地3'聚腺苷酸)尾和用于反转录的(聚腺苷酸)尾上游的最近的1到10个核苷酸,优选地1到5个核苷酸,更优选地3到5个核苷酸特异的引物和/或一个对cDNA的相应的(5'聚胸苷酸)序列特异的扩增引物,该序列对RNA尾(3'聚腺苷酸)尾和cDNA的相应的(5'聚胸苷酸)序列下游的最近的的1到10个核苷酸,优选1到5个核苷酸,更优选3到5个核苷酸互补。相应地,除前述公开的引物外,可增加引物对的选择能力并因而增加被最接近末端序列锚点的特定核苷酸所确定的cDNA群的数目。The method according to the invention comprises the last 1 to 10 nucleotides upstream of the (preferably 3' polyA) tail of the RNA and the (polyA) tail for reverse transcription, preferably 1 to 5 nucleotides, more preferably 3 to 5 nucleotides specific primers and/or an amplification primer specific to the corresponding (5' polythymidylic acid) sequence of the cDNA that is specific to the RNA tail (3 The nearest 1 to 10 nucleotides, preferably 1 to 5 nucleotides, more preferably 3 to 5 nuclei downstream of the 'polyA) tail and the corresponding (5' polyT) sequence of the cDNA nucleotide complementation. Accordingly, in addition to the aforementioned disclosed primers, it is possible to increase the selectivity of primer pairs and thus the number of cDNA populations defined by a particular nucleotide closest to the anchor point of the terminal sequence.

术语“锚定引物”是指在基因特异性引物的5’末端加入一段修饰序列(包括酶切位点、标签序列和人工设计的随机序列等),然后通过逆转录或PCR扩增将该修饰序列锚定在目的基因上,最终以该锚定序列作为引物进行后续检测。在一定程度上可提高特定基因检测的特异性。The term "anchor primer" refers to the addition of a modified sequence (including restriction sites, tag sequences and artificially designed random sequences, etc.) to the 5' end of the gene-specific primer, and then the modified sequence is amplified by reverse transcription or PCR The sequence is anchored on the target gene, and the anchor sequence is finally used as a primer for subsequent detection. To some extent, the specificity of specific gene detection can be improved.

术语“探针”是指用捕获标记或检测标记来标记引物,检测引物产物。探针序列用于与引物序列所产生的序列进行杂交,并且通常与不包括引物序列的序列杂交。与引物序列类似,探针序列也用捕获标记或检测标记来标记,需说明的是当引物用捕获标记来标记时,用检测标记来标记探针,反之亦然。在本发明中探针可以为TaqMan探针、MGB探针、杂交探针中的一种。比如,所述探针为TaqMan探针,标记探针5’端的为一种荧光发光基团,其是FAM、VIC、TET、JOE、ROX、CY3、CY5、HEX中的一种;标记探针3’端为一种荧光猝灭基团,其是BHQ1、BHQ2、BHQ3、TAMRA、DABCYL、NFQ中的一种。The term "probe" refers to the labeling of a primer with a capture label or a detection label and the detection of the primer product. The probe sequence is used to hybridize to the sequence generated by the primer sequence, and typically to a sequence that does not include the primer sequence. Similar to the primer sequence, the probe sequence is also labeled with a capture label or a detection label. It should be noted that when the primer is labeled with a capture label, the probe is labeled with a detection label, and vice versa. In the present invention, the probe can be one of TaqMan probe, MGB probe and hybridization probe. For example, the probe is a TaqMan probe, and the 5' end of the labeled probe is a fluorescent luminescent group, which is one of FAM, VIC, TET, JOE, ROX, CY3, CY5, and HEX; the labeled probe The 3' end is a fluorescent quenching group, which is one of BHQ1, BHQ2, BHQ3, TAMRA, DABCYL, and NFQ.

下面结合具体实施例,对本发明作进一步的阐述说明。应理解,这些实施例仅用于说明本发明而不在于限制本发明的范围。下述实施例中的实验方法,如无特殊说明,均为常规方法;所用的材料,如无特殊说明,均为自常规生化试剂公司购买得到的。The present invention will be further described below in conjunction with specific embodiments. It should be understood that these examples are only used to illustrate the present invention and are not intended to limit the scope of the present invention. The experimental methods in the following examples, unless otherwise specified, are conventional methods; the materials used, unless otherwise specified, were purchased from conventional biochemical reagent companies.

1.引物和探针的设计1. Design of primers and probes

目前,HBV分为至少10种基因型,在我国存在A~D 4种基因型。根据我国存在的HBV基因型,发明人从GenBank中下载多条A~D基因型HBV参考序列,通过MegAlign软件分析不同基因型HBV基因组的保守区域。遵循引物和探针的设计原则,在这些保守区域中通过Primer Premier 5软件设计出针对pgRNA检测的特异性引物和探针序列。为排除HBV DNA的干扰,发明人在逆转录引物的5’端加入了一段随机锚定序列。在上述引物、探针和随机锚定序列设计过程中,尽量避免发卡结构、引物内部二聚体、引物间二聚体以及错配的形成。此外,发明人通过NCBI Blast在线数据库(http://blast.ncbi.nlm.nih.gov/Blast.cgi)对上述设计的HBV特异性引物和探针序列以及随机锚定序列进行比对分析避免与其它病毒或人类基因发生非特异结合。通过多轮筛选和优化,最终确定一套灵敏度和特异度最优的引物、探针和随机锚定序列,序列如表1所示。HBV特异性序列均为A~D基因型HBV的高度保守序列(见图1A)。At present, HBV is divided into at least 10 genotypes, and there are 4 genotypes A to D in my country. According to the HBV genotypes existing in my country, the inventors downloaded multiple A-D genotype HBV reference sequences from GenBank, and analyzed the conserved regions of HBV genomes of different genotypes by MegAlign software. Following the design principles of primers and probes, specific primers and probe sequences for pgRNA detection were designed in these conserved regions by Primer Premier 5 software. In order to exclude the interference of HBV DNA, the inventors added a random anchor sequence to the 5' end of the reverse transcription primer. During the design process of the above-mentioned primers, probes and random anchor sequences, try to avoid the formation of hairpin structures, internal dimers of primers, dimers between primers and mismatches. In addition, the inventors used the NCBI Blast online database (http://blast.ncbi.nlm.nih.gov/Blast.cgi) to compare and analyze the HBV-specific primer and probe sequences and random anchor sequences designed above to avoid Non-specific binding to other viruses or human genes. Through multiple rounds of screening and optimization, a set of primers, probes and random anchor sequences with optimal sensitivity and specificity were finally determined, and the sequences are shown in Table 1. HBV-specific sequences are highly conserved sequences of HBV genotypes A to D (see Figure 1A).

表1.引物序列Table 1. Primer sequences

其中,Probe-HR的5’端荧光探针为FAM,3’端荧光探针为BHQ1。HR-R1、HR-RT1序列的下划线部分为相同的随机锚定序列,HR-R2、HR-RT2序列的下划线部分为相同的随机锚定序列。如本领域技术人员所知,发明人通过实验进一步证实,随机锚定序列不影响检测的效率,只要尽量不与HR-F或Probe-HR形成引物二聚体即可。Among them, the 5' fluorescent probe of Probe-HR is FAM, and the 3' fluorescent probe is BHQ1. The underlined parts of the HR-R1 and HR-RT1 sequences are the same random anchor sequences, and the underlined parts of the HR-R2 and HR-RT2 sequences are the same random anchor sequences. As known to those skilled in the art, the inventors have further confirmed through experiments that the random anchor sequence does not affect the detection efficiency, as long as it does not form primer dimers with HR-F or Probe-HR as much as possible.

2.检测方法及体系的建立2. Establishment of detection method and system

采用的TaqMan探针法定量检测血液HBV pgRNA的原理是:先利用加入锚定序列的特异性逆转录引物HR-RT将提取出的RNA逆转录为带有锚定序列的cDNA。The principle of the TaqMan probe method used for the quantitative detection of blood HBV pgRNA is: first, the extracted RNA is reverse-transcribed into cDNA with an anchor sequence by using the specific reverse transcription primer HR-RT added with the anchor sequence.

具体操作如下,提取后的核酸混合物利用DNase I(Thermo Fisher Scientific,Waltham,MA,USA)处理。The specific operation is as follows, the extracted nucleic acid mixture is treated with DNase I (Thermo Fisher Scientific, Waltham, MA, USA).

DNase I处理体系(10μl)为:DNase I treatment system (10μl) is:

将混合物置于37℃孵育30分钟后再加入Incubate the mixture at 37°C for 30 minutes before adding

EDTA lμlEDTA 1 μl

HR-RT(10μM) lμlHR-RT (10μM) lμl

65℃孵育10分钟Incubate at 65°C for 10 minutes

随后通过RevertAid First Strand DNA Synthesis Kit(Thermo FisherScientific,Waltham,MA,USA)用将其逆转录成为cDNA。It was then reverse transcribed into cDNA by RevertAid First Strand DNA Synthesis Kit (Thermo Fisher Scientific, Waltham, MA, USA).

逆转录反应体系(20μl)为:The reverse transcription reaction system (20μl) is:

反应条件为:25℃ 5分钟,42℃ 60分钟,70℃ 5分钟。The reaction conditions were: 5 minutes at 25°C, 60 minutes at 42°C, and 5 minutes at 70°C.

然后利用HBV特异性正向序列和锚定序列分别作为定量PCR检测的正向和反向引物进行扩增,TaqMan探针序列紧靠正向引物(图2)。为了确定本发明所确定引物和探针的检测体系,发明人首先采用SYBR Green的方法检测了引物的特异性,并将其扩增的溶解曲线与非专利文献1中报道的引物做了比较。结果显示,本发明中引物的特异性(图3A)优于非专利文献1中所使用的引物(图3B)。此外,发明人分别尝试了检测体系中探针用量和退火温度两个关键因素对荧光定量PCR反应的影响。结果显示,不同浓度的探针(图3C)和不同退火温度(图3D)对于荧光定量PCR反应的扩增强度和灵敏度无明显影响,所得扩增曲线基本重叠。Then, the HBV-specific forward sequence and anchor sequence were used as the forward and reverse primers for quantitative PCR detection, respectively, for amplification, and the TaqMan probe sequence was next to the forward primer (Figure 2). In order to determine the detection system of the primers and probes identified in the present invention, the inventors first tested the specificity of the primers using the method of SYBR Green, and compared their amplified melting curves with the primers reported in Non-Patent Document 1. The results showed that the specificity of the primers of the present invention ( FIG. 3A ) was better than that of the primers used in Non-Patent Document 1 ( FIG. 3B ). In addition, the inventors respectively tried the effects of two key factors in the detection system, the amount of probe and the annealing temperature, on the fluorescent quantitative PCR reaction. The results showed that different concentrations of probes (Figure 3C) and different annealing temperatures (Figure 3D) had no significant effect on the amplification intensity and sensitivity of the fluorescent quantitative PCR reaction, and the obtained amplification curves basically overlapped.

最终,采用的荧光定量PCR的反应体系(30μl)如下:Finally, the reaction system (30 μl) of the fluorescent quantitative PCR adopted is as follows:

在ABI Step One Plus荧光定量PCR仪上进行扩增,扩增循环参数为50℃,5分钟,94℃,2分钟;然后94℃,15秒,58℃,45秒,45个循环;在每个循环的延伸阶段(58℃)同步多次采集荧光。The amplification was carried out on the ABI Step One Plus fluorescent quantitative PCR instrument, and the amplification cycle parameters were 50°C, 5 minutes, 94°C, 2 minutes; then 94°C, 15 seconds, 58°C, 45 seconds, 45 cycles; Fluorescence was collected multiple times simultaneously during the extension phase (58°C) of each cycle.

另外,可以使用SYBR-Green I进行荧光染色。反应体系(20μl)如下:Alternatively, SYBR-Green I can be used for fluorescent staining. The reaction system (20μl) is as follows:

在ABI Step One Plus荧光定量PCR仪上进行扩增,扩增循环参数为50℃,5分钟,94℃,2分钟;然后94℃,15秒,58℃,45秒,45个循环;在每个循环的延伸阶段(58℃)同步多次采集荧光。加设溶解曲线步骤:95℃,15秒,60℃,1分钟,然后从60℃梯度升温,每升高0.3℃采集一次荧光信号,直到温度升高到到95℃,95℃维持15秒。The amplification was carried out on the ABI Step One Plus fluorescent quantitative PCR instrument, and the amplification cycle parameters were 50°C, 5 minutes, 94°C, 2 minutes; then 94°C, 15 seconds, 58°C, 45 seconds, 45 cycles; Fluorescence was collected multiple times simultaneously during the extension phase (58°C) of each cycle. Add melting curve steps: 95°C for 15 seconds, 60°C for 1 minute, then gradually increase the temperature from 60°C, collect fluorescence signals every 0.3°C increase until the temperature rises to 95°C, and maintain 95°C for 15 seconds.

3.构建诊断试剂标准品3. Construction of standard diagnostic reagents

提取HBV稳定复制细胞系HepAD38细胞培养上清中的HBV pgRNA,利用HR-RT逆转录引物进行逆转录后,用HR-F和HR-R进行扩增,将扩增后的目的片段切胶回收后连接至pEASY-Blunt克隆载体上。经测序验证为装入的目的片段后,作为实验室内部检测血液HBVpgRNA的标准品使用。Extract the HBV pgRNA from the culture supernatant of the HBV stable replicating cell line HepAD38, perform reverse transcription with HR-RT reverse transcription primers, amplify with HR-F and HR-R, and cut the amplified target fragment into gel to recover Then ligated to the pEASY-Blunt cloning vector. After being verified as the loaded target fragment by sequencing, it is used as a standard for testing blood HBVpgRNA in the laboratory.

最终目的片段序列为:The final destination fragment sequence is:

AGACCACCAAATGCCCCTATCCTATCAACACTTCCGGAAACTACTGTTGTTAGACGACGAGGCAGGTCCCCTAGAAGAAGAACTCCCTCGCCTGTGTCGTGTGTTACGGTGTGA(SEQ NO:9)AGACCACCAAATGCCCCTATCCTATCAACACTTCCGGAAACTACTGTTGTTAGACGACGAGGCAGGTCCCTAGAAGAAGAACTCCCTCGCCTGTGTGTCGTGTGTTACGGTGTGA (SEQ NO: 9)

测序验证的峰图如图4所示。The peak map of the sequencing verification is shown in Figure 4.

4.灵敏度的检测4. Detection of sensitivity

将构建好的标准品进行10倍倍比稀释,浓度分别为1.00E+08、1.00E+07、1.00E+06、1.00E+05、1.00E+04、1.00E+03、1.00E+02、1.00E+01copies/ml。用上述确定的检测体系和循环参数对倍比稀释的标准品进行定量检测。结果显示,本发明的荧光定量检测方法具有较高的灵敏度,线性范围可低至1.00E+01copies/ml;标准曲线的线性回归方程为:y=-3.2645x+40.393,相关系数的平方R2=0.9993(图5)。Dilute the constructed standard 10 times, the concentrations are 1.00E+08, 1.00E+07, 1.00E+06, 1.00E+05, 1.00E+04, 1.00E+03, 1.00E+02 , 1.00E+01 copies/ml. Quantitatively detect the doubly diluted standard substance with the detection system and cycle parameters determined above. The results show that the fluorescent quantitative detection method of the present invention has higher sensitivity, and the linear range can be as low as 1.00E+01copies/ml; the linear regression equation of the standard curve is: y=-3.2645x + 40.393, the square R of the correlation coefficient = 0.9993 (Fig. 5).

与非专利文献1中报道的血液HBV RNA荧光定量检测方法进行比较,结果显示,非专利文献1所建立的荧光定量PCR方法的扩增标准曲线的线性回归方程为:y=-3.4315x+45.463,相关系数的平方R2=0.9952(图6)。以同等浓度的标准品,本发明的荧光定量PCR检测方法扩增的ct值较非专利文献1所建方法低3个循环以上,表明本发明的检测方法更加灵敏。Compared with the blood HBV RNA fluorescence quantitative detection method reported in non-patent literature 1, the results show that the linear regression equation of the amplification standard curve of the fluorescence quantitative PCR method established in non-patent literature 1 is: y=-3.4315x+45.463 , the square of the correlation coefficient R 2 =0.9952 (Fig. 6). With the standard substance of the same concentration, the ct value amplified by the fluorescent quantitative PCR detection method of the present invention is lower than that of the method established in Non-Patent Document 1 by more than 3 cycles, indicating that the detection method of the present invention is more sensitive.

在检测质粒标准品的基础上,利用本发明建立的荧光定量PCR方法检测了不同基因型(B、C和D基因型)的HBV pgRNA的水平,并对其灵敏度进行了评价。On the basis of detecting plasmid standard products, the level of HBV pgRNA of different genotypes (B, C and D genotypes) was detected by using the fluorescent quantitative PCR method established by the present invention, and its sensitivity was evaluated.

其中B、C型来源于病人的血液,HBV pgRNA经本发明的荧光定量PCR检测方法测量后的浓度分别为1.33E+06、1.50E+06copies/ml,以10倍倍比稀释,稀释后的浓度分别为1.33E+05、1.33E+04、1.33E+03、1.33E+02copies/ml,1.50E+05、1.50E+04、1.50E+03、1.50E+02copies/ml。Wherein B and C types are derived from the patient's blood, and the concentrations of HBV pgRNA measured by the fluorescent quantitative PCR detection method of the present invention are respectively 1.33E+06, 1.50E+06 copies/ml, diluted by 10 times, and the diluted The concentrations were 1.33E+05, 1.33E+04, 1.33E+03, 1.33E+02copies/ml, 1.50E+05, 1.50E+04, 1.50E+03, 1.50E+02copies/ml.

D型来源是HepAD38细胞的上清,HBV pgRNA经本发明的荧光定量PCR检测方法测量后的浓度为3.26E+05copies/ml,以10倍倍比稀释,稀释后的浓度为3.26E+04、3.26E+03、3.26E+02、3.26E+01copies/ml。The source of type D is the supernatant of HepAD38 cells, and the concentration of HBV pgRNA measured by the fluorescent quantitative PCR detection method of the present invention is 3.26E+05 copies/ml, which is diluted by 10 times, and the concentration after dilution is 3.26E+04, 3.26E+03, 3.26E+02, 3.26E+01 copies/ml.

结果显示,在B、C和D基因型HBV pgRNA的定量检测中,本发明建立的荧光定量PCR方法仍显示出较高的灵敏度(图7)。The results show that in the quantitative detection of HBV pgRNA of B, C and D genotypes, the fluorescent quantitative PCR method established by the present invention still shows high sensitivity ( FIG. 7 ).

5.特异性的检测5. Detection of specificity

使用EasyPure Viral RNA Kit(TransGen,货号:ER201-01)核酸提取试剂盒提取HBV感染者血液中的核酸(包括DNA和RNA)。该血液中HBV DNA载量为9.45E+07copies/ml,HBV pgRNA经本发明的荧光定量PCR检测方法测量所得载量为1.48E+06copies/ml,核酸提取后分为3组,第1组经DNase I处理后进行逆转录反应,第2组不做任何处理,第3组进行DNase I处理;三组同时利用本发明所建立的荧光定量PCR方法检测。Nucleic acid (including DNA and RNA) in the blood of HBV-infected patients was extracted using the EasyPure Viral RNA Kit (TransGen, catalog number: ER201-01) nucleic acid extraction kit. The HBV DNA load in the blood was 9.45E+07copies/ml, and the load of HBV pgRNA measured by the fluorescent quantitative PCR detection method of the present invention was 1.48E+06copies/ml. After the nucleic acid was extracted, it was divided into 3 groups. After the DNase I treatment, the reverse transcription reaction was carried out, the second group was not treated, and the third group was treated with DNase I; the three groups were detected by the fluorescent quantitative PCR method established by the present invention at the same time.

结果显示,在HBV DNA水平(9.45E+07copies/ml)高于HBV pgRNA(1.48E+06copies/ml)的血液中,即使提取的核酸不进行DNase的处理,其对HBV pgRNA检测的干扰很小(图8A中的2),经DNase处理后干扰消失(图8A中的3)。The results showed that in the blood with HBV DNA level (9.45E+07copies/ml) higher than that of HBV pgRNA (1.48E+06copies/ml), even if the extracted nucleic acid was not treated with DNase, it had little interference to the detection of HBV pgRNA (2 in FIG. 8A ), and the interference disappeared after being treated with DNase (3 in FIG. 8A ).

除此之外,还检测了两例正常人的血液,结果均低于检测下限(图8B中的5和6)。In addition, the blood of two normal persons was also detected, and the results were all lower than the detection limit (5 and 6 in Fig. 8B).

上述结果表明,本发明建立的血液HBV pgRNA荧光定量检测方法具有较高的特异度,即使不经DNase预处理,HBV DNA对pgRNA检测的干扰微不足道。The above results show that the blood HBV pgRNA fluorescent quantitative detection method established by the present invention has high specificity, even without DNase pretreatment, the interference of HBV DNA on pgRNA detection is insignificant.

6.重复性检测6. Repeatability detection

选取质粒浓度为1.00E+03copies/ml的标准品进行检测,重复30次。结果显示,30次重复检测的ct值的标准差(SD值)为0.275537,重复性较好(图9)。A standard product with a plasmid concentration of 1.00E+03copies/ml was selected for detection and repeated 30 times. The results showed that the standard deviation (SD value) of the ct value of 30 repeated detections was 0.275537, and the repeatability was good (Fig. 9).

7.临床样本的检测7. Detection of clinical samples

用本发明的荧光定量PCR方法对5例未经抗病毒治疗的慢乙肝患者血液HBV pgRNA进行了检测。同时,血液HBV DNA水平经商品化的HBV DNA定量检测试剂盒(湖南圣湘生物科技有限公司)检测。The fluorescent quantitative PCR method of the present invention was used to detect the blood HBV pgRNA of 5 cases of chronic hepatitis B patients without antiviral treatment. At the same time, the blood HBV DNA level was detected by a commercial HBV DNA quantitative detection kit (Hunan Shengxiang Biotechnology Co., Ltd.).

结果显示,未经抗病毒治疗的慢乙肝患者血液中存在一定水平的HBV pgRNA,其水平低于HBV DNA水平(表2)。The results showed that there was a certain level of HBV pgRNA in the blood of chronic hepatitis B patients without antiviral treatment, which was lower than the level of HBV DNA (Table 2).

随后,将上述血液进行10倍倍比稀释,然后用本发明的荧光定量PCR检测方法对不同稀释度的血液样本进行检测。结果如表3所示,本发明的荧光定量PCR检测方法对于临床样本的检测应显示出较高的灵敏度。Subsequently, the above-mentioned blood is diluted 10 times, and then the blood samples with different dilutions are detected by the fluorescent quantitative PCR detection method of the present invention. The results are shown in Table 3, the fluorescence quantitative PCR detection method of the present invention should show higher sensitivity for the detection of clinical samples.

表2.未经抗病毒治疗的慢乙肝患者血液中HBV DNA和HBV pgRNA水平Table 2. HBV DNA and HBV pgRNA levels in the blood of chronic hepatitis B patients without antiviral treatment

表3.梯度稀释后的慢乙肝患者血液中HBV pgRNA水平Table 3. HBV pgRNA levels in the blood of patients with chronic hepatitis B after serial dilution

同样可用SYBR-Green法定量检测血清HBV pgRNA水平。首先用SYBR-Green法检测标准品,并绘制标准曲线,然后按照上述步骤检测临床样本,即可定量检测血液中的HBVpgRNA水平。The SYBR-Green method can also be used to quantitatively detect the level of serum HBV pgRNA. First, use the SYBR-Green method to detect the standard substance, and draw a standard curve, and then follow the above steps to detect the clinical samples to quantitatively detect the level of HBVpgRNA in the blood.

SEQUENCE LISTINGSEQUENCE LISTING

<110> 北京大学<110> Peking University

<120> 一种高度灵敏和特异的血液HBV pgRNA荧光定量PCR检测体系和检测方法<120> A highly sensitive and specific blood HBV pgRNA fluorescent quantitative PCR detection system and detection method

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Claims (10)

1.一种血液HBV pgRNA荧光定量PCR检测体系,包括:1. A blood HBV pgRNA fluorescent quantitative PCR detection system, comprising: 反向锚定引物,所述反向锚定引物包括基因特异性引物部分和修饰序列部分,所述基因特异性引物部分为AGGCGAGGGAGTTCTTCTTCTA,位于反向锚定引物的3’末端;优选地,所述修饰序列部分包括酶切位点、标签序列或人工设计的随机序列;进一步优选地,所述反向锚定引物的核苷酸序列如SEQ NO:3所示;更进一步还优选,检测体系还包括正向引物和反向引物。A reverse anchor primer, the reverse anchor primer includes a gene-specific primer part and a modified sequence part, the gene-specific primer part is AGGCGAGGGAGTTTCTTCTTCTA, located at the 3' end of the reverse anchor primer; preferably, the The modified sequence part includes a restriction site, a tag sequence or an artificially designed random sequence; further preferably, the nucleotide sequence of the reverse anchor primer is shown in SEQ NO: 3; further preferably, the detection system is also Includes forward and reverse primers. 2.如权利要求1所述的血液HBV pgRNA荧光定量PCR检测体系,其特征在于:2. blood HBV pgRNA fluorescent quantitative PCR detection system as claimed in claim 1, is characterized in that: 正向引物,其核苷酸序列如SEQ NO:1所示;Forward primer, its nucleotide sequence is shown in SEQ NO:1; 反向引物,其核苷酸序列如SEQ NO:2所示;以及Reverse primer, its nucleotide sequence is shown in SEQ NO:2; And 反向锚定引物,其核苷酸序列如SEQ NO:3所示;优选地,所述检测体系还包括:探针,其核苷酸序列如SEQ NO:4所示;例如,所述探针为TaqMan探针、MGB探针、杂交探针中的一种;优选地,在所述探针5’端标记FAM、VIC、TET、JOE、ROX、CY3、CY5、HEX中的一种;和在所述探针3’端标记BHQ1、BHQ2、BHQ3、TAMRA、DABCYL、NFQ中的一种。Reverse anchor primer, its nucleotide sequence is shown in SEQ NO:3; Preferably, the detection system also includes: a probe, its nucleotide sequence is shown in SEQ NO:4; For example, the probe The needle is one of TaqMan probe, MGB probe, and hybridization probe; preferably, one of FAM, VIC, TET, JOE, ROX, CY3, CY5, and HEX is labeled at the 5' end of the probe; And label one of BHQ1, BHQ2, BHQ3, TAMRA, DABCYL, NFQ at the 3' end of the probe. 3.如权利要求1或2所述的血液HBV pgRNA荧光定量PCR检测体系在制备HBV诊断试剂或试剂盒中的应用。3. the application of blood HBV pgRNA fluorescent quantitative PCR detection system as claimed in claim 1 or 2 in the preparation of HBV diagnostic reagent or test kit. 4.一种血液HBV pgRNA荧光定量PCR检测方法,包括:4. A blood HBV pgRNA fluorescent quantitative PCR detection method, comprising: 步骤1.以待测血液HBV pgRNA为模板,用反向锚定引物进行逆转录,所述反向锚定引物包括基因特异性引物部分和修饰序列部分,所述基因特异性引物部分为AGGCGAGGGAGTTCTTCTTCTA,位于反向锚定引物的3’末端;优选地,所述修饰序列部分包括酶切位点、标签序列或人工设计的随机序列;优选地,所述反向锚定引物的核苷酸序列如SEQNO:3所示;还优选,所述检测方法还包括:Step 1. Using the blood HBV pgRNA to be tested as a template, carry out reverse transcription with a reverse anchor primer, the reverse anchor primer includes a gene-specific primer part and a modified sequence part, and the gene-specific primer part is AGGCGAGGGAGTTTCTTCTTCTA, Located at the 3' end of the reverse anchor primer; preferably, the modified sequence part includes a restriction site, a tag sequence or an artificially designed random sequence; preferably, the nucleotide sequence of the reverse anchor primer is as follows Shown in SEQNO:3; Also preferably, described detection method also comprises: 步骤2.以获得的逆转录产物为模板,用序列如SEQ NO:1和2的引物和序列如SEQ NO:4的探针进行扩增,以定量检测血液中的HBV pgRNA;或者以获得的逆转录产物为模板,用序列如SEQ NO:1和2的引物进行扩增,并掺入荧光染料,以SYBR Green法定量检测血液中的HBV pgRNA。Step 2. The obtained reverse transcription product is used as a template, amplified with primers such as SEQ NO: 1 and 2 and a probe with a sequence such as SEQ NO: 4, to quantitatively detect HBV pgRNA in blood; or obtained The reverse transcription product was used as a template, amplified by primers with sequences such as SEQ NO: 1 and 2, and incorporated with fluorescent dyes, and the HBV pgRNA in the blood was quantitatively detected by the SYBR Green method. 5.反向锚定引物在制备HBV诊断试剂或试剂盒中的应用,其特征在于,所述反向锚定引物包括基因特异性引物部分和修饰序列部分,所述基因特异性引物部分为AGGCGAGGGAGTTCTTCTTCTA,位于反向锚定引物的3’末端;优选地,所述修饰序列部分包括酶切位点、标签序列或人工设计的随机序列;还优选地,所述反向锚定引物的核苷酸序列如SEQ NO:3所示。5. The application of the reverse anchor primer in the preparation of HBV diagnostic reagents or test kits, characterized in that the reverse anchor primer comprises a gene-specific primer part and a modified sequence part, and the gene-specific primer part is AGGCGAGGGAGTTTCTTCTTCTA , located at the 3' end of the reverse anchor primer; preferably, the modified sequence part includes a restriction site, a tag sequence or an artificially designed random sequence; also preferably, the nucleotide of the reverse anchor primer The sequence is shown in SEQ NO:3. 6.一种血液HBV pgRNA荧光定量PCR检测试剂盒,包括:6. A blood HBV pgRNA fluorescent quantitative PCR detection kit, comprising: 反向锚定引物,所述反向锚定引物包括基因特异性引物部分和修饰序列部分,所述基因特异性引物部分为AGGCGAGGGAGTTCTTCTTCTA,位于反向锚定引物的3’末端。A reverse anchor primer, the reverse anchor primer includes a gene-specific primer part and a modified sequence part, the gene-specific primer part is AGGCGAGGGAGTTTCTTCTTCTA, located at the 3' end of the reverse anchor primer. 7.如权利要求6所述的血液HBV pgRNA荧光定量PCR检测试剂盒,其中,所述修饰序列部分包括酶切位点、标签序列或人工设计的随机序列。7. The blood HBV pgRNA fluorescence quantitative PCR detection kit as claimed in claim 6, wherein, the modified sequence part comprises an enzyme cutting site, a tag sequence or an artificially designed random sequence. 8.如权利要求6所述的血液HBV pgRNA荧光定量PCR检测试剂盒,其中,所述反向锚定引物的核苷酸序列如SEQ NO:3所示。8. blood HBV pgRNA fluorescent quantitative PCR detection kit as claimed in claim 6, wherein, the nucleotide sequence of described reverse anchor primer is as shown in SEQ NO:3. 9.如权利要求6-8任一项所述的血液HBV pgRNA荧光定量PCR检测试剂盒,还包括:正向引物和反向引物。9. The blood HBV pgRNA fluorescent quantitative PCR detection kit according to any one of claims 6-8, further comprising: a forward primer and a reverse primer. 10.如权利要求9所述的血液HBV pgRNA荧光定量PCR检测试剂盒,其特征在于:10. blood HBV pgRNA fluorescent quantitative PCR detection kit as claimed in claim 9, is characterized in that: 正向引物,其核苷酸序列如SEQ NO:1所示;Forward primer, its nucleotide sequence is shown in SEQ NO:1; 反向引物,其核苷酸序列如SEQ NO:2所示;以及Reverse primer, its nucleotide sequence is shown in SEQ NO:2; And 反向锚定引物,其核苷酸序列如SEQ NO:3所示;优选地,所述试剂盒还包括:探针,其核苷酸序列如SEQ NO:4所示;优选地,所述探针为TaqMan探针、MGB探针、杂交探针中的一种;进一步优选地,在所述探针5’端标记FAM、VIC、TET、JOE、ROX、CY3、CY5、HEX中的一种;和在所述探针3’端标记BHQ1、BHQ2、BHQ3、TAMRA、DABCYL、NFQ中的一种。Reverse anchor primer, its nucleotide sequence is shown in SEQ NO:3; Preferably, the kit also includes: a probe, its nucleotide sequence is shown in SEQ NO:4; Preferably, the The probe is one of TaqMan probe, MGB probe, and hybridization probe; further preferably, one of FAM, VIC, TET, JOE, ROX, CY3, CY5, and HEX is labeled at the 5' end of the probe species; and one of BHQ1, BHQ2, BHQ3, TAMRA, DABCYL, NFQ is labeled at the 3' end of the probe.
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