CN106803251A - The apparatus and method of aortic coaractation pressure differential are determined by CT images - Google Patents
The apparatus and method of aortic coaractation pressure differential are determined by CT images Download PDFInfo
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Abstract
本发明公开了一种由CT影像确定主动脉缩窄处压力差的装置和方法。本发明的装置包括:数据读取模块、二维切片模块、分割模块、三维重建模块、主动脉缩窄判别模块、特征提取模块、分类模块、结果显示模块。本发明的步骤包括:1、读取CT数据,2、对CT数据进行二维切片处理,3、分割主动脉图像,4、测量主动脉直径比,5、判别是否存在缩窄,6、从三维主动脉模型中提取特征,7、对主动脉缩窄程度进行分类,8、显示主动脉缩窄处压差值。本发明利用机器学习算法对CT影像形态学特征进行分类,可由CT影像直接得到较为准确的主动脉缩窄处压差值,提高了CT影像在主动脉缩窄诊断中的准确性。
The invention discloses a device and a method for determining the pressure difference at the constriction of the aorta from CT images. The device of the present invention includes: a data reading module, a two-dimensional slicing module, a segmentation module, a three-dimensional reconstruction module, aortic coarctation discrimination module, feature extraction module, classification module and result display module. The steps of the present invention include: 1. reading CT data, 2. performing two-dimensional slice processing on the CT data, 3. segmenting the aorta image, 4. measuring the aorta diameter ratio, 5. judging whether there is constriction, 6. Extract features from the three-dimensional aortic model, 7. Classify the degree of aortic coarctation, and 8. Display the pressure difference at the coarctation of the aorta. The invention classifies the morphological features of CT images by using a machine learning algorithm, and can directly obtain a relatively accurate pressure difference value at the coarctation of the aorta from the CT images, thereby improving the accuracy of the CT images in the diagnosis of coarctation of the aorta.
Description
技术领域technical field
本发明属于电子技术领域,更进一步涉及医学影像处理、人工智能和机器学习技术领域中的一种由计算机断层扫描CT(Computed Tomography)影像确定主动脉缩窄处压力差的装置及方法。本发明针对医学临床中诊断主动脉缩窄时,需要对压力差进行量化的情形,利用确定主动脉缩窄处压力差的装置,实现了由CT影像定量得到主动脉缩窄处两端的压力差。The invention belongs to the field of electronic technology, and further relates to a device and method for determining the pressure difference at the coarctation of the aorta from computed tomography CT (Computed Tomography) images in the technical fields of medical image processing, artificial intelligence and machine learning. The present invention aims at the situation that the pressure difference needs to be quantified when diagnosing coarctation of the aorta in clinical medicine, and realizes quantitatively obtaining the pressure difference at both ends of the coarctation of the aorta from CT images by using the device for determining the pressure difference at the coarctation of the aorta .
背景技术Background technique
主动脉缩窄是先天性心脏病中一种常见的畸形,目前临床上由CT诊断主动脉缩窄主要通过从形态学特征对主动脉缩窄严重程度进行定性估测,要想实现准确地评估主动脉缩窄严重程度,需要使用压力导丝有创地伸入病灶内部,测量前后两端的压差值,这种测量方法不但对患者有较大的损伤,临床操作难度较大,同时费用也比较昂贵。Coarctation of the aorta is a common malformation in congenital heart disease. At present, CT diagnosis of coarctation of the aorta is mainly based on the qualitative assessment of the severity of coarctation of the aorta based on morphological features. To achieve an accurate assessment To determine the severity of coarctation of the aorta, it is necessary to use a pressure guide wire to invasively penetrate into the lesion to measure the pressure difference between the front and rear ends. relatively expensive.
中国科学院半导体研究所在其申请的专利文献“一种光纤心内压导丝”(公开号:CN105054916A,申请号:CN201510609653.4,申请日:2015年11月18日)中公开了一种光纤心内压导丝。该装置包括光纤和固定在光纤端面上的测压腔,实现了将导丝伸入人体内部测量压力差。该装置存在的不足是,必须将装置伸入至人体内部,有创侧压的方法对患者有一定的损伤,并且费用较为昂贵。The Institute of Semiconductors of the Chinese Academy of Sciences discloses an optical fiber in the patent document "A Fiber Optic Cardiac Pressure Guidewire" (publication number: CN105054916A, application number: CN201510609653.4, application date: November 18, 2015). Intracardiac guidewire. The device includes an optical fiber and a pressure measuring cavity fixed on the end face of the optical fiber, and realizes that the guide wire is inserted into the human body to measure the pressure difference. The disadvantage of this device is that the device must be inserted into the inside of the human body, and the method of invasive lateral pressure will cause certain damage to the patient, and the cost is relatively expensive.
Matthew J.Budoff,A Shittu,S Roy,在其发表的论文“Use of cardiovascularcomputed tomography in the diagnosis and management of coarctation of theaorta”(Journal of Thoracic&Cardiovascular Surgery,2013,146(1):229-32)中描述了由CT影像评估主动脉缩窄的方法。该方法首先对病人的病灶部位进行CT扫描,并将CT影像导入至计算机的影像系统,其次,从计算机上读取CT影像上的特征,如:缩窄的比率、缩窄所在的位置等,实现对主动脉缩窄的定性评估。该方法存在的不足之处在于,无法定量地评估主动脉缩窄的程度,不能由CT影像得到主动脉缩窄处的压力差,这一判别主动脉缩窄的金标准。Matthew J.Budoff, A Shittu, S Roy, described in their published paper "Use of cardiac computed tomography in the diagnosis and management of coarctation of theaorta" (Journal of Thoracic & Cardiovascular Surgery, 2013,146(1):229-32) A method for assessing coarctation of the aorta from CT images. In this method, a CT scan is first performed on the lesion of the patient, and the CT image is imported into the computer imaging system. Secondly, the features on the CT image are read from the computer, such as the ratio of narrowing, the position of the narrowing, etc. Enables qualitative assessment of coarctation of the aorta. The disadvantage of this method is that the degree of aortic coarctation cannot be quantitatively evaluated, and the pressure difference at the coarctation of the aorta, which is the gold standard for judging aortic coarctation, cannot be obtained from CT images.
苏州润心医疗科技有限公司在其申请的专利文献“基于心脏CT图像的冠状动脉血流储备分数计算方法”(公开号:CN106023202A,申请号:CN201610339892.7,申请日:2016年05月20日)中公开了一种由CT图像定量确定冠状动脉狭窄程度的方法。该方法首先提取心肌图像,对冠状动脉精确分割,然后对冠状动脉体数据做边缘检测,生成冠状动脉三角网格模型,最后实现对冠状动脉狭窄程度的定量评估。该方法存在的不足之处是,所针对的血管只是冠状动脉,冠状动脉生理结构与主动脉差距大,且冠状动脉狭窄往往由于血栓等堵塞而形成,而主动脉缩窄是由于血管生理结构的改变,上述方法不适合用来评估主动脉缩窄。Suzhou Runxin Medical Technology Co., Ltd. applied for the patent document "Calculation method of coronary blood flow reserve fraction based on cardiac CT image" (public number: CN106023202A, application number: CN201610339892.7, application date: May 20, 2016 ) discloses a method for quantitatively determining the degree of coronary artery stenosis from CT images. The method first extracts the myocardial image, accurately segments the coronary arteries, and then performs edge detection on the coronary artery volume data to generate a triangular mesh model of the coronary arteries, and finally realizes the quantitative evaluation of the degree of coronary artery stenosis. The disadvantage of this method is that the blood vessels targeted are only the coronary arteries, the physiological structure of the coronary arteries differs greatly from that of the aorta, and coronary artery stenosis is often formed due to blockage such as thrombus, while aortic stenosis is due to the physiological structure of the blood vessels. Changes, the above method is not suitable for the assessment of aortic coarctation.
综上所述,现有的方法只能由CT影像对主动脉缩窄情况进行粗略的估计,若要得到主动脉缩窄处两端的压力差只能采取有创测量的方法,对患者的损伤较大,并且费用较为昂贵。To sum up, the existing methods can only roughly estimate the coarctation of the aorta from CT images. To obtain the pressure difference between the two ends of the coarctation of the aorta, only invasive measurement can be used, which will harm the patient. Larger and more expensive.
发明内容Contents of the invention
本发明的目的是针对医学临床中诊断主动脉缩窄时,需要对压力差进行量化的情形,提供了一种由CT影像直接得到缩窄处压力差的装置和方法,可无创、定量、快速地根据CT影像评估主动脉缩窄的严重程度,为医生的诊断和治疗提供了有力的辅助,并可降低病人的治疗成本。The purpose of the present invention is to provide a device and method for directly obtaining the pressure difference at the coarctation from CT images, which can be non-invasive, quantitative, and rapid Accurately evaluate the severity of aortic coarctation based on CT images, which provides powerful assistance for doctors' diagnosis and treatment, and can reduce the treatment cost of patients.
实现本发明目的的思路是,分割出先心病患者术前CT图像中的主动脉血管,并将其进行三维可视化重建,对重建得到的模型进行主动脉缩窄判定,对判定为缩窄的数据进一步提取特征,并使用机器学习的方法将特征映射到具体的压差值范围内,得到主动脉缩窄处的压差值,为临床医生提供参考。The idea of realizing the object of the present invention is to segment out the aortic vessel in the preoperative CT image of the patient with congenital heart disease, and carry out three-dimensional visualization reconstruction, and determine the coarctation of the aorta on the model obtained by reconstruction, and further analyze the data determined as coarctation. Features are extracted, and machine learning methods are used to map the features to a specific range of differential pressure values to obtain the differential pressure value at the coarctation of the aorta, which provides reference for clinicians.
为实现上述目的,本发明的装置包括数据读取模块、二维切片模块、分割模块、三维重建模块、主动脉缩窄判别模块、特征提取模块、分类模块、结果显示模块,其中:To achieve the above object, the device of the present invention includes a data reading module, a two-dimensional slicing module, a segmentation module, a three-dimensional reconstruction module, aortic coarctation discrimination module, feature extraction module, classification module, and result display module, wherein:
所述的数据读取模块,用于读入格式为.dcm或.raw的原始胸部CT数据;The data reading module is used to read in the original chest CT data whose format is .dcm or .raw;
所述的二维切片模块,用于将读入的原始胸部CT数据分别映射为不同灰度值像素点的二维切片图像矩阵;The two-dimensional slicing module is used to map the read-in original chest CT data into two-dimensional sliced image matrices of pixels with different gray values;
所述的分割模块,用于从二维切片图像矩阵中选择包含降主动脉末端的切片图像矩阵,选择包含降主动脉末端的切片图像矩阵,以所选的切片图像矩阵的中心点为中心,生成n*n厘米的正方形框,n的大小介于图像矩阵长度的五分之一到四分之一之间;利用S[i,j]=I[p,q]×G[0.25]公式,计算平滑后图像各像素点坐标处的灰度值,去除二维切片图像噪声,利用医学图像软件,提取正方形框内的降主动脉末端血管边缘,得到血管壁边缘图像;将血管壁边缘图像所包围的所有内部点的灰度值置为255,组成一个血管内部区域图像,利用公式,计算血管内部区域图像的质心;载入已标记血管区域切片图像矩阵之外的最下层切片图像矩阵,在切片图像矩阵上确定一个种子点元素,该种子点元素的横坐标与上层切片图像矩阵血管内部区域的质心横坐标相等,纵坐标与上层切片图像矩阵血管内部区域的质心纵坐标相等,以血管壁图像的边缘为界限,以种子点元素坐标确定种子点进行8邻域自适应区域生长,得到切片图像矩阵上的主动脉管内区域图像;其中,S[i,j]表示平滑后图像中位于[i,j]处的像素点的灰度值,I[p,q]表示二维切片图像中位于[p,q]处的像素点的灰度值,G[0.25]表示标准差为0.25的高斯函数,M表示血管内部区域图像的质心点,∫表示积分操作,f(x,y)表示血管内部区域图像像素点(x,y)处的灰度值;The segmentation module is used to select a slice image matrix including the end of the descending aorta from the two-dimensional slice image matrix, select a slice image matrix including the end of the descending aorta, and take the center point of the selected slice image matrix as the center, Generate a square frame of n*n centimeters, the size of n is between one-fifth and one-fourth of the length of the image matrix; use the formula S[i,j]=I[p,q]×G[0.25] , calculate the gray value at the coordinates of each pixel in the smoothed image, remove the noise of the two-dimensional slice image, use the medical image software to extract the edge of the blood vessel at the end of the descending aorta in the square frame, and obtain the edge image of the blood vessel wall; the edge image of the blood vessel wall The gray value of all the surrounding points is set to 255 to form an image of the inner area of the blood vessel, using The formula calculates the centroid of the image of the inner area of the blood vessel; loads the slice image matrix of the lowest layer other than the slice image matrix of the marked blood vessel area, determines a seed point element on the slice image matrix, and the abscissa of the seed point element is consistent with the slice image of the upper layer The abscissa of the center of mass of the inner area of the matrix blood vessel is equal, and the ordinate is equal to the ordinate of the center of mass of the inner area of the blood vessel in the upper slice image matrix. The edge of the blood vessel wall image is used as the boundary, and the seed point is determined by the element coordinates of the seed point to perform 8 Neighborhood adaptive areas grow to obtain the image of the aortic region on the sliced image matrix; where, S[i,j] represents the gray value of the pixel at [i,j] in the image after smoothing, and I[p,q] represents the two The gray value of the pixel at [p,q] in the three-dimensional slice image, G[0.25] represents a Gaussian function with a standard deviation of 0.25, M represents the centroid point of the image of the inner region of the blood vessel, ∫ represents the integral operation, f(x , y) represents the gray value at the image pixel point (x, y) of the inner region of the blood vessel;
所述的三维重建模块,用于将切片图像矩阵上的主动脉管内区域图像导入到三维重建软件中进行三维体绘制,得到绘制后的三维主动脉模型;The three-dimensional reconstruction module is used to import the image of the aortic region on the slice image matrix into three-dimensional reconstruction software for three-dimensional volume rendering, and obtain a three-dimensional aortic model after rendering;
所述的主动脉缩窄判别模块,用于在三维主动脉模型中,每间隔1mm测量一次主动脉直径,分别将相邻的两次测量的主动脉直径做比,并将比值结果存入直径比统计表中,若直径比统计表中的值均大于0.8,则存在缩窄,否则,不存在缩窄;The aortic coarctation discrimination module is used to measure the aortic diameter at intervals of 1 mm in the three-dimensional aortic model, compare the aortic diameters measured twice adjacently, and store the ratio result in the diameter In the ratio statistical table, if the values in the diameter ratio statistical table are greater than 0.8, there is narrowing, otherwise, there is no narrowing;
所述的特征提取模块,用于将三维主动脉模型导入医学图像处理软件,将软件计算得到的主动脉血管的最大梯度dmax值作为特征1的值;将主动脉缩窄位于升主动脉位置时的标识赋值为0,将主动脉缩窄位于降主动脉位置时的标识赋值为‐1,将主动脉缩窄位于主动脉弓位置时的标识赋值为1,将赋值后的标识作为特征2的值;将三维主动脉模型导入医学图像处理软件,将软件测量得到的主动脉血管的最缩窄处直径作为特征3的值;将三维主动脉模型导入医学图像处理软件,将软件测量并计算得到的最缩窄处直径与降主动脉直径的比值作为特征4的值;利用R1=πR2/(SQRT((H×W)/3600)公式,计算主动脉缩窄面积比,将计算结果作为特征5的值;利用R2=D/SQRT(SQRT((H×W)/3600)公式,计算主动脉缩窄比率,将计算结果作为特征6的值;其中,R1表示主动脉图像的缩窄面积比,π表示圆周率,R表示主动脉图像最缩窄处半径,/表示除法操作,SQRT表示开方操作,H表示患者身高,W表示患者体重,R2表示主动脉图像的缩窄比率,D表示主动脉图像中最缩窄处直径;The feature extraction module is used to import the three-dimensional aorta model into medical image processing software, and use the maximum gradient dmax value of the aortic vessel calculated by the software as the value of feature 1; when the coarctation of the aorta is located at the position of the ascending aorta Assign the logo of 0 to 0, assign the logo of the coarctation of the aorta to the position of the descending aorta as -1, assign the logo of the coarctation of the aorta to the position of the aortic arch to 1, and use the assigned logo as the value of feature 2; Import the three-dimensional aortic model into the medical image processing software, and use the diameter of the narrowest part of the aortic vessel measured by the software as the value of feature 3; import the three-dimensional aortic model into the medical image processing software, and use the software to measure and calculate the most The ratio of the diameter of the constriction to the diameter of the descending aorta was taken as the value of feature 4; the ratio of aortic coarctation area was calculated using the formula R1=πR 2 /(SQRT((H×W)/3600), and the calculation result was taken as feature 5 The value of R2=D/SQRT(SQRT((H×W)/3600) formula to calculate the aortic coarctation ratio, and use the calculation result as the value of feature 6; wherein, R1 represents the coarctation area ratio of the aortic image , π represents the circumference ratio, R represents the radius of the most constricted part of the aortic image, / represents the division operation, SQRT represents the square root operation, H represents the patient's height, W represents the patient's weight, R2 represents the constriction ratio of the aortic image, D represents the aorta The diameter of the narrowest point in the arterial image;
所述的分类模块,用于将6个特征值输入到主缩压差模型中,主缩压差模型输出与6个特征值相对应的主动脉缩窄处的压差值;The classification module is used to input 6 eigenvalues into the main systolic pressure difference model, and the main systolic pressure difference model outputs the pressure difference value at the coarctation of the aorta corresponding to the 6 eigenvalues;
所述的结果显示模块,用于显示主缩压差模型得到的主动脉缩窄处压差值。The result display module is used to display the pressure difference value at the coarctation of the aorta obtained from the main systolic pressure difference model.
本发明的方法包括如下步骤:Method of the present invention comprises the steps:
(1)读取CT数据:(1) Read CT data:
数据读取模块读入格式为.dcm或.raw的原始胸部CT数据;The data reading module reads in the original chest CT data in the format of .dcm or .raw;
(2)对CT数据进行二维切片处理:(2) Perform two-dimensional slice processing on CT data:
二维切片模块将读入的原始胸部CT数据,分别映射为不同灰度值像素点的二维切片图像矩阵;The two-dimensional slicing module maps the read-in original chest CT data into two-dimensional sliced image matrices of pixels with different gray values;
(3)分割主动脉图像:(3) Segment the aortic image:
(3a)分割模块从二维切片图像矩阵中,选择包含降主动脉末端的切片图像矩阵,以所选的切片图像矩阵的中心点为中心,生成n*n厘米的正方形框,n的大小介于图像矩阵长度的五分之一到四分之一之间;(3a) The segmentation module selects the slice image matrix containing the end of the descending aorta from the two-dimensional slice image matrix, and takes the center point of the selected slice image matrix as the center to generate a square frame of n*n centimeters, and the size of n is between Between one-fifth and one-fourth of the length of the image matrix;
(3b)利用高斯平滑公式,计算平滑后图像各像素点坐标处的灰度值,去除二维切片图像噪声,利用医学图像软件,提取正方形框内的降主动脉末端血管边缘,得到血管壁边缘图像;(3b) Using the Gaussian smoothing formula, calculate the gray value at the coordinates of each pixel point of the smoothed image, remove the noise of the two-dimensional slice image, and use the medical image software to extract the edge of the descending aorta end vessel in the square frame to obtain the edge of the vessel wall image;
(3c)将血管壁边缘图像所包围的所有内部点的灰度值置为255,组成一个血管内部区域图像,利用Image Moments公式,计算血管内部区域图像的质心;(3c) Set the gray value of all internal points surrounded by the edge image of the blood vessel wall to 255 to form an image of the internal area of the blood vessel, and use the Image Moments formula to calculate the centroid of the image of the internal area of the blood vessel;
(3d)载入已标记血管区域切片图像矩阵之外的最下层切片图像矩阵,利用主动脉切片图像分割方法,得到切片图像矩阵上的主动脉管内区域图像;(3d) loading the lowest slice image matrix other than the slice image matrix of the marked blood vessel area, and using the aorta slice image segmentation method to obtain the image of the aortic intravascular area on the slice image matrix;
(3e)判断是否已载入所有切片图像矩阵,若是,则执行步骤(4),否则,执行步骤(3d);(3e) judging whether all slice image matrices have been loaded, if so, perform step (4), otherwise, perform step (3d);
(4)测量主动脉直径比:(4) Measure the aortic diameter ratio:
(4a)三维重建模块将切片图像矩阵上的主动脉管内区域图像,导入到三维重建软件中进行三维体绘制,得到绘制后的三维主动脉模型;(4a) The three-dimensional reconstruction module imports the image of the inner region of the aorta on the slice image matrix into the three-dimensional reconstruction software for three-dimensional volume rendering, and obtains the three-dimensional aortic model after rendering;
(4b)在三维主动脉模型中,每间隔1mm测量一次主动脉直径;(4b) In the three-dimensional aorta model, the aortic diameter was measured every 1mm interval;
(4c)分别将相邻的两次测量的主动脉直径做比,并将比值结果存入直径比统计表中;(4c) compare the aortic diameters of two adjacent measurements respectively, and store the ratio results in the diameter ratio statistics table;
(5)主动脉缩窄判别模块判断直径比统计表中是否存在小于0.8的值,若是,则执行步骤(6),否则,执行步骤(7);(5) Whether the aortic coarctation discrimination module judges whether there is a value less than 0.8 in the diameter ratio statistical table, if so, then perform step (6), otherwise, perform step (7);
(6)从三维主动脉模型中提取特征:(6) Extract features from the three-dimensional aorta model:
(6a)特征提取模块将三维主动脉模型,导入医学图像处理软件,将软件计算得到的主动脉血管的最大梯度dmax值作为特征1的值;(6a) The feature extraction module imports the three-dimensional aorta model into the medical image processing software, and uses the maximum gradient dmax value of the aortic vessel calculated by the software as the value of feature 1;
(6b)将主动脉缩窄位于升主动脉位置时的标识赋值为0,将主动脉缩窄位于降主动脉位置时的标识赋值为-1,将主动脉缩窄位于主动脉弓位置时的标识赋值为1,将赋值后的标识作为特征2的值;(6b) Assign a value of 0 to the flag when the coarctation of the aorta is located at the position of the ascending aorta, assign a value of -1 to the flag when the coarctation of the aorta is located at the position of the descending aorta, and assign a value to the flag when the coarctation of the aorta is located at the position of the aortic arch is 1, and the assigned identifier is used as the value of feature 2;
(6c)将三维主动脉模型导入医学图像处理软件,将软件测量得到的主动脉血管的最缩窄处直径作为特征3的值;(6c) Import the three-dimensional aorta model into the medical image processing software, and use the diameter of the narrowest part of the aortic vessel measured by the software as the value of feature 3;
(6d)将三维主动脉模型导入医学图像处理软件,将软件测量并计算得到的最缩窄处直径与降主动脉直径的比值作为特征4的值;(6d) Import the three-dimensional aorta model into the medical image processing software, and use the ratio of the diameter of the narrowest part measured and calculated by the software to the diameter of the descending aorta as the value of feature 4;
(6e)利用缩窄面积比公式,计算主动脉图像主动脉缩窄面积比,将计算结果作为特征5的值;(6e) Using the narrowing area ratio formula to calculate the aortic narrowing area ratio of the aortic image, and use the calculation result as the value of feature 5;
(6f)利用缩窄比率公式,计算主动脉图像缩窄比率,将计算结果作为特征6的值;(6f) using the narrowing ratio formula to calculate the narrowing ratio of the aortic image, and use the calculation result as the value of feature 6;
(7)对主动脉缩窄程度进行分类:(7) Classify the degree of aortic coarctation:
(7a)分类模块将6个特征值输入到主缩压差模型中;(7a) The classification module inputs 6 eigenvalues into the main compression difference model;
(7b)主缩压差模型输出与6个特征值相对应的主动脉缩窄处的压差值;(7b) The main systolic pressure difference model outputs the pressure difference value at the coarctation of the aorta corresponding to the 6 eigenvalues;
(8)结果显示模块显示主缩压差模型得到的主动脉缩窄处压差值。(8) The result display module displays the pressure difference value at the coarctation of the aorta obtained from the main systolic pressure difference model.
本发明与现有的技术相比具有以下优点:Compared with the prior art, the present invention has the following advantages:
第一,由于本发明的装置采用CT图像分割模块、CT图像特征提取模块、CT图像分类模块,实现CT影像直接得到较为准确的主动脉缩窄处压差值,克服了现有技术导丝测压法对患者损伤大,临床操作难度大,费用比较昂贵的不足,使得本发明可以无创、快速地测量压差,降低了临床操作难度,节省了诊断成本。First, since the device of the present invention adopts a CT image segmentation module, a CT image feature extraction module, and a CT image classification module, the CT image can directly obtain a more accurate pressure difference value at the coarctation of the aorta, which overcomes the problem of the prior art guide wire measurement. The pressure method has the disadvantages of great damage to the patient, difficult clinical operation, and high cost, so that the present invention can measure the pressure difference non-invasively and quickly, which reduces the difficulty of clinical operation and saves the cost of diagnosis.
第二,由于本发明的方法采用分割原始胸部CT数据中的主动脉、从三维主动脉模型中提取特征、对主动脉缩窄程度进行分类,实现提取CT影像特征,得到较为准确的主动脉缩窄处压差值,克服了现有技术仅能从CT形态学特征对主动脉缩窄严重程度进行定性估测,无法定量评估的不足,使得本发明大大提高了CT影像对于诊断主动脉缩窄的准确性。Second, since the method of the present invention adopts the method of segmenting the aorta in the original chest CT data, extracting features from the three-dimensional aortic model, and classifying the degree of aortic coarctation, the extraction of CT image features is realized, and a more accurate aortic coarctation can be obtained. The pressure difference value at the stenosis overcomes the deficiency that the existing technology can only qualitatively estimate the severity of aortic coarctation from the CT morphological features, but cannot quantitatively evaluate it, so that the present invention greatly improves the use of CT images in diagnosing aortic coarctation. accuracy.
附图说明Description of drawings
图1是本发明装置的方框图;Fig. 1 is the block diagram of device of the present invention;
图2是本发明方法的流程图;Fig. 2 is a flow chart of the inventive method;
图3是本发明方法中分割主动脉图像的流程图;Fig. 3 is the flowchart of segmentation aortic image in the method of the present invention;
图4是本发明方法中分割切片图像矩阵结果图,其中黑线标识区域图像为分割后得到的主动脉管内区域图像;Fig. 4 is the segmented slice image matrix result figure in the method of the present invention, wherein the black line mark region image is the region image in the aortic tube obtained after segmentation;
图5是本发明方法中分割后切片的三维重建,得到的绘制后三维主动脉模型。Fig. 5 is the three-dimensional reconstruction of the segmented slice in the method of the present invention, and the obtained three-dimensional aortic model after rendering.
具体实施方式detailed description
下面结合附图对本发明做详细描述。The present invention will be described in detail below in conjunction with the accompanying drawings.
参照附图1,对本发明的装置进行清楚、完整地描述。Referring to accompanying drawing 1, the device of the present invention is clearly and completely described.
本发明的装置包括数据读取模块、二维切片模块、分割模块、三维重建模块、主动脉缩窄判别模块、特征提取模块、分类模块、结果显示模块。The device of the present invention includes a data reading module, a two-dimensional slicing module, a segmentation module, a three-dimensional reconstruction module, an aortic coarctation discrimination module, a feature extraction module, a classification module and a result display module.
数据读取模块,用于读入格式为.dcm或.raw的原始胸部CT数据。The data reading module is used to read in the original chest CT data in the format of .dcm or .raw.
二维切片模块,用于将读入的原始胸部CT数据分别映射为不同灰度值像素点的二维切片图像矩阵。The two-dimensional slice module is used to map the read-in raw chest CT data into two-dimensional slice image matrices of pixels with different gray values.
分割模块,用于从二维切片图像矩阵中选择包含降主动脉末端的切片图像矩阵,选择包含降主动脉末端的切片图像矩阵,以所选的切片图像矩阵的中心点为中心,生成n*n厘米的正方形框,n的大小介于图像矩阵长度的五分之一到四分之一之间;利用S[i,j]=I[p,q]×G[0.25]公式,计算平滑后图像各像素点坐标处的灰度值,去除二维切片图像噪声,利用医学图像软件,提取正方形框内的降主动脉末端血管边缘,得到血管壁边缘图像;将血管壁边缘图像所包围的所有内部点的灰度值置为255,组成一个血管内部区域图像,利用公式,计算血管内部区域图像的质心;载入已标记血管区域切片图像矩阵之外的最下层切片图像矩阵,在切片图像矩阵上确定一个种子点元素,该种子点元素的横坐标与上层切片图像矩阵血管内部区域的质心横坐标相等,纵坐标与上层切片图像矩阵血管内部区域的质心纵坐标相等,以血管壁图像的边缘为界限,以种子点元素坐标确定种子点进行8邻域自适应区域生长,得到切片图像矩阵上的主动脉管内区域图像;其中,S[i,j]表示平滑后图像中位于[i,j]处的像素点的灰度值,I[p,q]表示二维切片图像中位于[p,q]处的像素点的灰度值,G[0.25]表示标准差为0.25的高斯函数,M表示血管内部区域图像的质心点,∫表示积分操作,f(x,y)表示血管内部区域图像像素点(x,y)处的灰度值。The segmentation module is used to select the slice image matrix comprising the end of the descending aorta from the two-dimensional slice image matrix, select the slice image matrix comprising the end of the descending aorta, and take the center point of the selected slice image matrix as the center to generate n* A square frame of n centimeters, the size of n is between one-fifth and one-fourth of the length of the image matrix; use the formula S[i,j]=I[p,q]×G[0.25] to calculate the smoothness The gray value at the coordinates of each pixel point in the final image is used to remove the noise of the two-dimensional slice image. Using medical image software, the edge of the blood vessel at the end of the descending aorta in the square frame is extracted to obtain the edge image of the blood vessel wall; the edge image surrounded by the edge of the blood vessel wall The gray value of all internal points is set to 255 to form an image of the internal area of the blood vessel, using The formula calculates the centroid of the image of the inner area of the blood vessel; loads the slice image matrix of the lowest layer other than the slice image matrix of the marked blood vessel area, determines a seed point element on the slice image matrix, and the abscissa of the seed point element is consistent with the slice image of the upper layer The abscissa of the center of mass of the inner area of the matrix blood vessel is equal, and the ordinate is equal to the ordinate of the center of mass of the inner area of the blood vessel in the upper slice image matrix. The edge of the blood vessel wall image is used as the boundary, and the seed point is determined by the element coordinates of the seed point to perform 8 Neighborhood adaptive areas grow to obtain the image of the aortic region on the sliced image matrix; where, S[i,j] represents the gray value of the pixel at [i,j] in the image after smoothing, and I[p,q] represents the two The gray value of the pixel at [p,q] in the three-dimensional slice image, G[0.25] represents a Gaussian function with a standard deviation of 0.25, M represents the centroid point of the image of the inner region of the blood vessel, ∫ represents the integral operation, f(x , y) represents the gray value at the image pixel point (x, y) of the inner area of the blood vessel.
三维重建模块,用于将切片图像矩阵上的主动脉管内区域图像导入到三维重建软件中进行三维体绘制,得到绘制后的三维主动脉模型。The three-dimensional reconstruction module is used for importing the image of the inner region of the aorta on the slice image matrix into a three-dimensional reconstruction software for three-dimensional volume rendering, and obtaining a three-dimensional aortic model after rendering.
主动脉缩窄判别模块,用于在三维主动脉模型中,每间隔1mm测量一次主动脉直径,分别将相邻的两次测量的主动脉直径做比,并将比值结果存入直径比统计表中,若直径比统计表中的值均大于0.8,则存在缩窄,否则,不存在缩窄。The aortic coarctation discrimination module is used to measure the aortic diameter at intervals of 1 mm in the three-dimensional aortic model, compare the aortic diameters of two adjacent measurements, and store the ratio results in the diameter ratio statistics table In , if the values in the diameter ratio statistical table are greater than 0.8, there is narrowing, otherwise, there is no narrowing.
特征提取模块,用于将三维主动脉模型导入医学图像处理软件,将软件计算得到的主动脉血管的最大梯度dmax值作为特征1的值;将主动脉缩窄位于升主动脉位置时的标识赋值为0,将主动脉缩窄位于降主动脉位置时的标识赋值为‐1,将主动脉缩窄位于主动脉弓位置时的标识赋值为1,将赋值后的标识作为特征2的值;将三维主动脉模型导入医学图像处理软件,将软件测量得到的主动脉血管的最缩窄处直径作为特征3的值;将三维主动脉模型导入医学图像处理软件,将软件测量并计算得到的最缩窄处直径与降主动脉直径的比值作为特征4的值;利用R1=πR2/(SQRT((H×W)/3600)公式,计算主动脉缩窄面积比,将计算结果作为特征5的值;利用R2=D/SQRT(SQRT((H×W)/3600)公式,计算主动脉缩窄比率,将计算结果作为特征6的值;其中,R1表示主动脉图像的缩窄面积比,π表示圆周率,R表示主动脉图像最缩窄处半径,/表示除法操作,SQRT表示开方操作,H表示患者身高,W表示患者体重,R2表示主动脉图像的缩窄比率,D表示主动脉图像中最缩窄处直径。The feature extraction module is used to import the three-dimensional aorta model into the medical image processing software, and use the maximum gradient dmax value of the aortic vessel calculated by the software as the value of feature 1; when the coarctation of the aorta is located at the position of the ascending aorta, the identification value is assigned When the aortic coarctation is located at the position of the descending aorta, the logo is assigned as -1, and when the aortic coarctation is located at the aortic arch, the logo is assigned a value of 1, and the assigned logo is used as the value of feature 2; the three-dimensional aorta The arterial model is imported into the medical image processing software, and the diameter of the narrowest part of the aortic vessel measured by the software is used as the value of feature 3; the three-dimensional aortic model is imported into the medical image processing software, and the most narrowed part measured and calculated by the software The ratio of the diameter to the diameter of the descending aorta is used as the value of feature 4; the ratio of aortic coarctation area is calculated using the formula R1=πR 2 /(SQRT((H×W)/3600), and the calculation result is used as the value of feature 5; Use the formula R2=D/SQRT(SQRT((H×W)/3600) to calculate the aortic coarctation ratio, and use the calculation result as the value of feature 6; where, R1 represents the coarctation area ratio of the aortic image, and π represents PI, R represents the radius of the narrowest part of the aorta image, / represents the division operation, SQRT represents the square root operation, H represents the patient's height, W represents the patient's weight, R2 represents the constriction ratio of the aorta image, D represents the center of the aorta image The diameter of the narrowest point.
分类模块,用于将6个特征值输入到主缩压差模型中,主缩压差模型输出与6个特征值相对应的主动脉缩窄处的压差值。The classification module is used to input the 6 eigenvalues into the main systolic pressure difference model, and the main systolic pressure difference model outputs the pressure difference value at the coarctation of the aorta corresponding to the 6 eigenvalues.
结果显示模块,用于显示主缩压差模型得到的主动脉缩窄处压差值。The result display module is used to display the pressure difference value at the aortic constriction obtained by the main systolic pressure difference model.
参照附图2对本发明的方法做进一步的详细描述。The method of the present invention is described in further detail with reference to accompanying drawing 2.
步骤1,读取CT影像。Step 1, read CT images.
数据读取模块读入格式为.dcm或.raw的原始胸部CT数据。The data reading module reads in the original chest CT data in the format of .dcm or .raw.
步骤2,对CT数据进行二维切片处理。Step 2, perform two-dimensional slice processing on the CT data.
二维切片模块将读入的原始胸部CT数据分别映射为不同灰度值像素点的二维切片图像矩阵,采用3DMed软件将原始胸部CT数据根据灰度值映射为二维切片图像矩阵。The two-dimensional slicing module maps the read-in original chest CT data into two-dimensional slice image matrices of pixels with different gray values, and uses 3DMed software to map the original chest CT data into two-dimensional slice image matrices according to the gray values.
步骤3,分割主动脉图像。Step 3, segment the aortic image.
第一步,分割模块从二维切片图像矩阵中,选择包含降主动脉末端的切片图像矩阵,以所选的切片图像矩阵的中心点为中心,生成n*n厘米的正方形框,n的大小介于图像矩阵长度的五分之一到四分之一之间。In the first step, the segmentation module selects the slice image matrix containing the end of the descending aorta from the two-dimensional slice image matrix, and generates a square frame of n*n cm centered on the center point of the selected slice image matrix, and the size of n is Between one-fifth and one-fourth the length of the image matrix.
第二步,利用高斯平滑公式,计算平滑后图像各像素点坐标处的灰度值,去除二维切片图像噪声,利用医学图像软件,提取正方形框内的降主动脉末端血管边缘,得到血管壁边缘图像。The second step is to use the Gaussian smoothing formula to calculate the gray value at the coordinates of each pixel point of the smoothed image, remove the noise of the two-dimensional slice image, and use medical image software to extract the edge of the descending aorta end vessel in the square frame to obtain the vessel wall edge image.
所述的高斯平滑公式如下:The Gaussian smoothing formula is as follows:
S[i,j]=I[p,q]×G[0.25]S[i,j]=I[p,q]×G[0.25]
其中,S[i,j]表示平滑后图像中位于[i,j]处的像素点的灰度值,I[p,q]表示二维切片图像中位于[p,q]处的像素点的灰度值,G[0.25]表示标准差为0.25的高斯函数。Among them, S[i,j] represents the gray value of the pixel at [i,j] in the smoothed image, and I[p,q] represents the pixel at [p,q] in the two-dimensional slice image The gray value of G[0.25] represents a Gaussian function with a standard deviation of 0.25.
第三步,将血管壁边缘图像所包围的所有内部点的灰度值置为255,组成一个血管内部区域图像,利用Image Moments公式,计算血管内部区域图像的质心。In the third step, the gray value of all internal points surrounded by the edge image of the vessel wall is set to 255 to form an image of the inner region of the vessel, and the centroid of the image of the inner region of the vessel is calculated using the Image Moments formula.
所述的Image Moments公式如下:The Image Moments formula is as follows:
其中,M表示血管内部区域图像的质心点,∫表示积分操作,f(x,y)表示血管内部区域图像像素点(x,y)处的灰度值。Among them, M represents the centroid point of the image of the inner region of the blood vessel, ∫ represents the integration operation, and f(x, y) represents the gray value at the pixel point (x, y) of the image of the inner region of the blood vessel.
第四步,载入已标记血管区域切片图像矩阵之外的最下层切片图像矩阵,在载入的切片图像矩阵上确定一个种子点元素,其横坐标与上层切片图像矩阵血管内部区域的质心横坐标相等,纵坐标与上层切片图像矩阵血管内部区域的质心纵坐标相等,以第三步得到的血管壁图像的边缘为界限,以种子点元素坐标确定种子点进行8邻域自适应区域生长,得到切片图像矩阵上的主动脉管内区域图像。The fourth step is to load the lowest slice image matrix other than the slice image matrix of the marked blood vessel area, and determine a seed point element on the loaded slice image matrix, whose abscissa is the same as the centroid of the inner area of the blood vessel in the upper slice image matrix. The coordinates are equal, the ordinate is equal to the centroid ordinate of the inner region of the blood vessel in the upper slice image matrix, and the edge of the vessel wall image obtained in the third step is used as the boundary, and the seed point is determined by the element coordinates of the seed point to perform 8-neighborhood adaptive region growth, Obtain an image of the aortic intravascular area on the slice image matrix.
第五步,判断是否已载入所有切片图像矩阵,若是,则执行步骤4,否则,执行第四步。The fifth step is to judge whether all slice image matrices have been loaded, if so, go to step 4, otherwise, go to step 4.
步骤4,测量主动脉直径比。Step 4, measure the aortic diameter ratio.
三维重建模块将切片图像矩阵上的主动脉管内区域图像,导入到三维重建软件中进行三维体绘制,得到绘制后的三维主动脉模型。The three-dimensional reconstruction module imports the image of the inner region of the aorta on the slice image matrix into the three-dimensional reconstruction software for three-dimensional volume rendering, and obtains the three-dimensional aortic model after rendering.
在三维主动脉模型中,每间隔1mm测量一次主动脉直径。In the three-dimensional aortic model, the aortic diameter was measured at intervals of 1 mm.
分别将相邻的两次测量的主动脉直径做比,并将比值结果存入直径比统计表中。The aortic diameters of two adjacent measurements are compared respectively, and the ratio results are stored in the diameter ratio statistics table.
步骤5,主动脉缩窄判别模块,判断直径比统计表中是否存在小于0.8的值,若是,则执行步骤(6),否则,执行步骤(7)。Step 5, the aortic coarctation discrimination module judges whether there is a value less than 0.8 in the diameter ratio statistical table, if yes, execute step (6), otherwise, execute step (7).
步骤6,从三维主动脉模型中提取特征。Step 6, feature extraction from the 3D aorta model.
特征提取模块将三维主动脉模型导入医学图像处理软件,将软件计算得到的主动脉血管的最大梯度dmax值作为特征1的值。The feature extraction module imports the three-dimensional aorta model into the medical image processing software, and uses the maximum gradient dmax value of the aortic vessel calculated by the software as the value of feature 1.
将主动脉缩窄位于升主动脉位置时的标识赋值为0,将主动脉缩窄位于降主动脉位置时的标识赋值为‐1,将主动脉缩窄位于主动脉弓位置时的标识赋值为1,将赋值后的标识作为特征2的值。Assign a value of 0 when the coarctation of the aorta is located in the ascending aorta, assign a value of -1 when the coarctation of the aorta is located in the descending aorta, and assign a value of 1 when the coarctation of the aorta is located in the aortic arch. Use the assigned identifier as the value of feature 2.
将三维主动脉模型导入医学图像处理软件,将软件测量得到的主动脉血管的最缩窄处直径作为特征3的值。The three-dimensional aorta model was imported into the medical image processing software, and the diameter of the narrowest part of the aortic vessel measured by the software was used as the value of feature 3.
将三维主动脉模型导入医学图像处理软件,将软件测量并计算得到的最缩窄处直径与降主动脉直径的比值作为特征4的值。The three-dimensional aorta model was imported into the medical image processing software, and the ratio of the diameter of the narrowest part measured and calculated by the software to the diameter of the descending aorta was used as the value of feature 4.
利用缩窄面积比公式,计算主动脉图像主动脉缩窄面积比,将计算结果作为特征5的值。Using the narrowing area ratio formula, calculate the aortic narrowing area ratio of the aortic image, and use the calculation result as the value of feature 5.
所述的缩窄面积比公式如下:The formula for the narrowing area ratio is as follows:
R1=πR2/(SQRT((H×W)/3600)R1=πR 2 /(SQRT((H×W)/3600)
其中,R1表示主动脉图像的缩窄面积比,π表示圆周率,R表示主动脉图像最缩窄处半径,/表示除法操作,SQRT表示开方操作,H表示患者身高,W表示患者体重。Among them, R1 represents the constriction area ratio of the aortic image, π represents the circumference ratio, R represents the radius of the most constricted part of the aortic image, / represents the division operation, SQRT represents the square root operation, H represents the patient’s height, and W represents the patient’s weight.
利用缩窄比率公式,计算主动脉图像缩窄比率,将计算结果作为特征6的值。Using the narrowing ratio formula, calculate the narrowing ratio of the aortic image, and use the calculation result as the value of feature 6.
所述的缩窄比率公式如下:The formula for the narrowing ratio is as follows:
R2=D/SQRT(SQRT((H×W)/3600)R2=D/SQRT(SQRT((H×W)/3600)
其中,R2表示主动脉图像的缩窄比率,D表示主动脉图像中最缩窄处直径。Among them, R2 represents the constriction ratio of the aortic image, and D represents the diameter of the most constricted part in the aortic image.
步骤7,对主动脉缩窄程度进行分类:Step 7, classify the degree of aortic coarctation:
从医院数据库中采集500例主动脉缩窄患者的病例数据组成训练集,每例病例数据包含患者的CT影像,身长,体重,主动脉缩窄处压差四种数据。The case data of 500 patients with coarctation of the aorta were collected from the hospital database to form a training set. The data of each case included the patient's CT image, body length, weight, and pressure difference at the coarctation of the aorta.
使用步骤6中的方法,定量计算患者的六个特征。Using the method in Step 6, quantitatively calculate the six characteristics of the patient.
根据患者主动脉缩窄处的压差确定该训练数据的标签label值,具体为,压差从0-5mmHg、6-10mmHg、10-15mmHg…95-100mmHg,标签label值分别为1、2、3…20。The label value of the training data is determined according to the pressure difference at the coarctation of the aorta of the patient. Specifically, the pressure difference is from 0-5mmHg, 6-10mmHg, 10-15mmHg...95-100mmHg, and the label values are 1, 2, 3…20.
将所有病例的特征及相应的label值作为训练集,输入到分类器中,所有500例数据导入完毕后,运行分类器得到分类模型model。The characteristics and corresponding label values of all cases are used as the training set and input into the classifier. After all 500 cases of data are imported, run the classifier to obtain the classification model model.
选取100例病例作为测试集,提取每一例测试病人的六个特征,输入到分类器的model模型进行分类,将得到的结果与该病例实际的压差进行比较,统计分类的准确率,准确率在80%以上则表明该模型具有很好的可用性。Select 100 cases as the test set, extract six features of each test patient, input them into the model model of the classifier for classification, compare the obtained results with the actual pressure difference of the case, and count the classification accuracy and accuracy Above 80% indicates that the model has good usability.
分类模块将6个特征值输入到主缩压差模型中。The classification module inputs 6 eigenvalues into the main compression difference model.
主缩压差模型输出与6个特征值相对应的主动脉缩窄处的压差值,具体是根据主缩压差模型的输出分类结果确定具体的压差值,输出结果为0表示该患者主动脉缩窄压差为0‐5mmHg,输出为1则表示该患者主动脉缩窄压差为5–10mmHg,以此类推,输出为20表示患者的主动脉缩窄压差为95–100mmHg。The main systolic pressure difference model outputs the pressure difference value at the coarctation of the aorta corresponding to the 6 eigenvalues. Specifically, the specific pressure difference value is determined according to the output classification results of the main systolic pressure difference model. The output result is 0, indicating that the patient The pressure difference of aortic coarctation is 0-5mmHg, the output of 1 means that the patient's aortic pressure difference is 5-10mmHg, and so on, the output of 20 means that the patient's aortic pressure difference is 95-100mmHg.
步骤8,结果显示模块显示主缩压差模型得到的主动脉缩窄处压差值。In step 8, the result display module displays the pressure difference value at the coarctation of the aorta obtained from the main systolic pressure difference model.
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