CN106701787A - Pichia pastoris for expressing foreign proteins, construction method of pichia pastoris and induced expression method of pichia pastoris - Google Patents
Pichia pastoris for expressing foreign proteins, construction method of pichia pastoris and induced expression method of pichia pastoris Download PDFInfo
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Abstract
本发明提供了表达外源蛋白的毕赤酵母菌株及表达系统,该毕赤酵母菌株的GTP1基因发生突变,突变后的毕赤酵母基因不能编码甘油转运蛋白或编码的甘油转运蛋白没有活性,能够在甘油存在条件下启动PAOX1的转录,从而提高毕赤酵母在甘油存在条件下AOX1的表达量,从而提高外源蛋白的表达量。同时,本发明还提供了所述表达外源蛋白的毕赤酵母的构建方法,所述表达外源蛋白的毕赤酵母的诱导表达方法,该诱导表达方法能够有效提高外源蛋白表达量及最终细胞浓度。
The present invention provides a Pichia pastoris strain expressing foreign protein and an expression system. The GTP1 gene of the Pichia pastoris strain is mutated, and the mutated Pichia pastoris gene cannot encode a glycerol transporter or the encoded glycerol transporter has no activity, and can The transcription of PAOX1 is activated under the condition of glycerol, thereby increasing the expression level of AOX1 in Pichia pastoris under the condition of glycerol, thereby increasing the expression level of exogenous protein. At the same time, the present invention also provides the construction method of the Pichia pastoris expressing the foreign protein, the induction expression method of the Pichia pastoris expressing the foreign protein, the induction expression method can effectively improve the expression amount of the foreign protein and finally cell concentration.
Description
技术领域technical field
本发明涉及发酵工程和生物工程技术领域,具体涉及表达外源蛋白的毕赤酵母、其构建方法及其诱导表达方法。The invention relates to the technical fields of fermentation engineering and bioengineering, in particular to Pichia pastoris expressing foreign protein, its construction method and its induced expression method.
背景技术Background technique
毕赤酵母表达系统是上世纪80年代初期发展起来的一种新型的外源蛋白表达系统,相对于大肠杆菌表达系统而言,毕赤酵母表达系统具有明显的优越性,诸如:倍增时较短,发酵周期短;基因组简单,便于操作;培养条件相对简单,且易于进行高密度培养,进而可以获得较高的目的蛋白产量;对外源蛋白可以进行折叠、糖基化修饰,形成二硫键等;同时,它还避免了酿酒酵母分泌效率差、表达菌株不够稳定、表达质粒易丢失等缺陷;并且,就糖基化程度而言,毕赤酵母中加到外源蛋白每条侧链的平均长度为8-14个甘露糖残基,较之酿酒酵母每条侧链平均50-150甘露糖残基要短得多,不会产生过度糖基化现象;此外,毕赤酵母其自身分泌的胞外蛋白很少,这对于后期的蛋白纯化非常有利。The Pichia pastoris expression system is a new type of exogenous protein expression system developed in the early 1980s. Compared with the E. coli expression system, the Pichia pastoris expression system has obvious advantages, such as: shorter doubling time , the fermentation cycle is short; the genome is simple and easy to operate; the culture conditions are relatively simple, and it is easy to carry out high-density culture, and then can obtain a higher yield of the target protein; foreign proteins can be folded, glycosylated, and disulfide bonded, etc. ; At the same time, it also avoids defects such as poor secretion efficiency of Saccharomyces cerevisiae, unstable expression strains, and easy loss of expression plasmids; The length is 8-14 mannose residues, which is much shorter than the average 50-150 mannose residues per side chain of Saccharomyces cerevisiae, and will not cause excessive glycosylation; There are very few extracellular proteins, which is very beneficial for later protein purification.
自20世纪80年代起建立的以毕赤酵母作为单细胞蛋白生产菌的高密度发酵方法已经成熟,干细胞产量可高达100g/L。种种优势使毕赤酵母成为近年来极受青睐的真核基因表达系统宿主。已用该系统成功表达了数百种来自病毒、细菌、真菌、动植物和人的蛋白,如人白介素、人血清白蛋白、肿瘤坏死因子、乙肝表面抗原、水蛭素衍生物等。The high-density fermentation method using Pichia pastoris as a single-cell protein producer established since the 1980s has matured, and the stem cell yield can reach as high as 100g/L. Various advantages have made Pichia pastoris a very popular host for eukaryotic gene expression systems in recent years. This system has successfully expressed hundreds of proteins from viruses, bacteria, fungi, animals, plants and humans, such as human interleukin, human serum albumin, tumor necrosis factor, hepatitis B surface antigen, hirudin derivatives, etc.
毕赤酵母是目前应用最广泛的外源蛋白真核表达系统之一,该系统基于一个高效的醇氧化酶1(alcohol oxidase 1,AOX1)启动子(AOX1promoter,PAOX1),PAOX1的转录只响应甲醇的诱导,当以甲醇为唯一碳源时,PAOX1启动外源蛋白的表达;而当甘油存在时,抑制AOX1的表达。Pichia pastoris is currently one of the most widely used eukaryotic expression systems for exogenous proteins. The system is based on an efficient alcohol oxidase 1 (AOX1) promoter (AOX1 promoter, PAOX1). The transcription of PAOX1 only responds to methanol When methanol was used as the sole carbon source, PAOX1 promoted the expression of exogenous proteins; while when glycerol was present, it inhibited the expression of AOX1.
发明内容Contents of the invention
针对上述问题,本发明提供了表达外源蛋白的毕赤酵母,其能解决现有技术中毕赤酵母在甘油诱导条件下AOX1表达量低的技术问题;此外,本发明还提供了该毕赤酵母的构建方法和诱导表达方法。In view of the above problems, the present invention provides Pichia pastoris expressing foreign proteins, which can solve the technical problem of low AOX1 expression in Pichia pastoris under glycerol-induced conditions in the prior art; in addition, the present invention also provides the Pichia pastoris Yeast construction method and inducible expression method.
本发明提供一种突变的毕赤酵母GTP1基因,其特征在于,所述突变导致毕赤酵母不能编码甘油转运蛋白或编码的甘油转运蛋白没有活性,并能够在甘油存在条件下启动PAOX1的转录。所述GTP1基因序列如SEQ ID NO.1所示,编码氨基酸序列如SEQ ID NO:2所示。The present invention provides a mutated Pichia GTP1 gene, characterized in that the mutation causes Pichia to fail to encode a glycerol transporter or the encoded glycerol transporter has no activity, and can initiate the transcription of PAOX1 in the presence of glycerol. The GTP1 gene sequence is shown in SEQ ID NO.1, and the encoded amino acid sequence is shown in SEQ ID NO:2.
进一步地,所述突变为全部或部分序列缺失突变、插入突变、移码突变或点突变。Further, the mutation is all or part of sequence deletion mutation, insertion mutation, frameshift mutation or point mutation.
进一步地,所述的缺失突变为缺失GTP1基因的整个开放阅读框或者部分序列突变。所述的GTP1体外缺失片段序列如SEQ ID NO:3所示。Further, the deletion mutation is the deletion of the entire open reading frame or partial sequence mutation of the GTP1 gene. The sequence of the GTP1 deletion fragment in vitro is shown in SEQ ID NO:3.
本发明还提供了包含所述突变基因的重组载体。包含重组载体的宿主细胞。The invention also provides a recombinant vector containing the mutant gene. Host cells containing recombinant vectors.
本发明还提供了一种表达外源蛋白的毕赤酵母菌株,其特征在于,所述毕赤酵母菌株含有权利要求1-5任意一项所述的突变的毕赤酵母GTP1基因。The present invention also provides a Pichia strain expressing a foreign protein, characterized in that the Pichia strain contains the mutated Pichia GTP1 gene according to any one of claims 1-5.
进一步地,所述毕赤酵母菌株是由酵母菌株X-33突变GTP1基因所得。Further, the Pichia strain is obtained by mutating the GTP1 gene of the yeast strain X-33.
进一步地,所述毕赤酵母菌株于2016年06月28日保藏于中国微生物菌种保藏管理委员会普通微生物中心,保藏号为CGMCC No.12718。Further, the Pichia pastoris strain was deposited in the General Microorganism Center of China Committee for Microorganism Culture Collection on June 28, 2016, with the preservation number CGMCC No.12718.
同时,本发明还提供了一种表达外源蛋白的毕赤酵母菌株表达系统,其特征在于,所述系统包括(1)权利要求1中所述的毕赤酵母菌株CGMCC No.12718,(2)含有启动子为PAOX1的外源蛋白表达载体;(3)碳源。Simultaneously, the present invention also provides a kind of Pichia strain expression system expressing exogenous protein, it is characterized in that, described system comprises (1) Pichia strain CGMCC No.12718 described in claim 1, (2 ) containing a foreign protein expression vector whose promoter is PAOX1; (3) a carbon source.
进一步地,所述毕赤酵母菌株的GTP1基因发生突变,GTP1基因序列如SEQ ID NO.1所示,使得突变后的毕赤酵母基因不能编码甘油转运蛋白或编码的甘油转运蛋白没有活性。Further, the GTP1 gene of the Pichia strain is mutated, and the sequence of the GTP1 gene is shown in SEQ ID NO.1, so that the mutated Pichia gene cannot encode a glycerol transporter or the encoded glycerol transporter has no activity.
进一步地,所述碳源为甘油、甲醇或甘油与甲醇的混合物。诱导所述毕赤酵母表达外源蛋白的碳源为甘油,所述甘油添加后的体积浓度B2的范围为0<B2≤0.5%。诱导所述毕赤酵母表达外源蛋白的碳源为甲醇,所述甲醇添加后的体积浓度A1的范围为0<A1≤2%。Further, the carbon source is glycerol, methanol or a mixture of glycerol and methanol. The carbon source for inducing the Pichia pastoris to express the exogenous protein is glycerol, and the range of the volume concentration B2 after the addition of the glycerol is 0<B2≤0.5%. The carbon source for inducing the Pichia pastoris to express the exogenous protein is methanol, and the range of the volume concentration A1 after the addition of the methanol is 0<A1≤2%.
诱导所述毕赤酵母表达外源蛋白的碳源为甲醇与甘油的混合物,所述甲醇添加后的体积浓度A2的范围为0<A2≤2%,所述甘油添加后的体积浓度B1的范围为0<B1≤0.5%。进一步优选为,所述甲醇添加后的体积浓度A2为1%,所述甘油添加后的体积浓度B1为0.25%。The carbon source for inducing the Pichia pastoris to express the exogenous protein is a mixture of methanol and glycerol, the range of the volume concentration A2 after the addition of the methanol is 0<A2≤2%, and the range of the volume concentration B1 after the addition of the glycerol is 0<B1≤0.5%. More preferably, the volume concentration A2 after the addition of methanol is 1%, and the volume concentration B1 after the addition of glycerin is 0.25%.
此外,本发明还提供了一种表达外源蛋白的毕赤酵母的诱导表达方法,其包括以下步骤,In addition, the present invention also provides a method for inducing the expression of Pichia expressing foreign proteins, which includes the following steps,
步骤1,将含有启动子为PAOX1的外源蛋白表达载体转化至毕赤酵母中,所述毕赤酵母含有突变的毕赤酵母GTP1基因;Step 1, transforming the exogenous protein expression vector containing the promoter PAOX1 into Pichia pastoris, which contains the mutated Pichia pastoris GTP1 gene;
步骤2,将步骤1得到的毕赤酵母接种于培养基中培养;Step 2, inoculating the Pichia pastoris obtained in step 1 in the culture medium;
步骤3,离心步骤2中获得的毕赤酵母菌,并重新培养至含有碳源的培养基中培养。Step 3, centrifuge the Pichia yeast obtained in step 2, and re-cultivate it in a medium containing carbon source.
其中,所述GTP1基因序列如SEQ ID NO.1所示,编码氨基酸序列如SEQ ID NO:2所示。所述突变为全部或部分序列缺失突变、插入突变、移码突变或点突变。所述的缺失突变为缺失GTP1基因的整个开放阅读框或者部分序列突变。所述的GTP1体外缺失片段序列如SEQ ID NO:3所示。Wherein, the GTP1 gene sequence is shown in SEQ ID NO.1, and the encoded amino acid sequence is shown in SEQ ID NO:2. Said mutation is all or part of sequence deletion mutation, insertion mutation, frame shift mutation or point mutation. The deletion mutation is the deletion of the entire open reading frame or partial sequence mutation of the GTP1 gene. The sequence of the GTP1 deletion fragment in vitro is shown in SEQ ID NO:3.
其中,步骤2中所述培养基为YPD液体培养基,于30℃、230r/min培养至OD600为2~6。Wherein, the medium described in step 2 is YPD liquid medium, cultured at 30° C. and 230 r/min until the OD 600 is 2-6.
其中,所述碳源为甘油、甲醇或甘油与甲醇的混合物。诱导所述毕赤酵母表达外源蛋白的碳源为甘油,所述甘油添加后的体积浓度B2的范围为0<B2≤0.5%。诱导所述毕赤酵母表达外源蛋白的碳源为甲醇,所述甲醇添加后的体积浓度A1的范围为0<A1≤2%。诱导所述毕赤酵母表达外源蛋白的碳源为甲醇与甘油的混合物,所述甲醇添加后的体积浓度A2的范围为0<A2≤2%,所述甘油添加后的体积浓度B1的范围为0<B1≤0.5%。优选为,所述甲醇添加后的体积浓度A2为1%,所述甘油添加后的体积浓度B1为0.25%。Wherein, the carbon source is glycerol, methanol or a mixture of glycerol and methanol. The carbon source for inducing the Pichia pastoris to express the exogenous protein is glycerol, and the range of the volume concentration B2 after the addition of the glycerol is 0<B2≤0.5%. The carbon source for inducing the Pichia pastoris to express the exogenous protein is methanol, and the range of the volume concentration A1 after the addition of the methanol is 0<A1≤2%. The carbon source for inducing the Pichia pastoris to express the exogenous protein is a mixture of methanol and glycerol, the range of the volume concentration A2 after the addition of the methanol is 0<A2≤2%, and the range of the volume concentration B1 after the addition of the glycerol is 0<B1≤0.5%. Preferably, the volume concentration A2 after the addition of methanol is 1%, and the volume concentration B1 after the addition of glycerol is 0.25%.
其中,所述碳源的添加方式为,以体积浓度计,0~24h,向液体培养基中添加1%甘油;24h~48h,向液体培养基中添加1%甲醇;48h~72h,向液体培养基中添加1%甲醇和0.25%甘油;72h~96h,向液体培养基中添加1%甲醇和0.25%甘油。Wherein, the method of adding the carbon source is, in terms of volume concentration, 0-24h, add 1% glycerol to the liquid medium; 24h-48h, add 1% methanol to the liquid medium; 48h-72h, add 1% methanol to the liquid medium 1% methanol and 0.25% glycerol are added to the medium; 72h to 96h, 1% methanol and 0.25% glycerol are added to the liquid medium.
此外,本发明还提供了表达外源蛋白的毕赤酵母的构建方法,其包括以下步骤:In addition, the present invention also provides a method for constructing Pichia pastoris expressing foreign proteins, which includes the following steps:
步骤1,体外构建发生突变的GTP1基因片段,发生突变的GTP1基因片段不能编码甘油转运蛋白或编码的甘油转运蛋白没有活性;Step 1, constructing a mutated GTP1 gene fragment in vitro, the mutated GTP1 gene fragment cannot encode a glycerol transporter or the encoded glycerol transporter has no activity;
步骤2,将步骤1中得到的发生突变的GTP1基因片段转化至酵母菌中;Step 2, transforming the mutated GTP1 gene fragment obtained in step 1 into yeast;
步骤3,对步骤2获得的酵母菌进行筛选,获得GTP1基因发生突变的酵母株;Step 3, screening the yeast obtained in step 2 to obtain a yeast strain with a mutation in the GTP1 gene;
步骤4,对步骤3获得的酵母菌进行筛选,获得在甘油或甲醇、甘油混合条件下诱导具有AOX1酶活性的毕赤酵母株。Step 4, screening the yeast obtained in step 3 to obtain a Pichia strain with AOX1 enzyme activity induced under the condition of glycerol or methanol and glycerol mixture.
进一步地,所述毕赤酵母菌株的GTP1基因序列如SEQ ID NO.1所示,编码氨基酸序列如SEQ ID NO:2所示。所述毕赤酵母菌株的GTP1基因发生的突变为缺失突变、插入突变、移码突变或点突变。优选为,所述毕赤酵母菌株的GTP1基因发生的突变为缺失突变。Further, the GTP1 gene sequence of the Pichia pastoris strain is shown in SEQ ID NO.1, and the encoded amino acid sequence is shown in SEQ ID NO:2. The mutation in the GTP1 gene of the Pichia pastoris strain is a deletion mutation, an insertion mutation, a frameshift mutation or a point mutation. Preferably, the mutation in the GTP1 gene of the Pichia strain is a deletion mutation.
进一步地,所述的缺失突变为缺失GTP1基因的整个开放阅读框或部分序列,GTP1体外缺失片段序列如SEQ ID NO:3所示。Further, the deletion mutation is deletion of the entire open reading frame or partial sequence of the GTP1 gene, and the sequence of the GTP1 deletion fragment in vitro is shown in SEQ ID NO:3.
采用本发明后,通过对毕赤酵母的GTP1基因发生突变,使得突变后的毕赤酵母基因不能编码甘油转运蛋白或编码的甘油转运蛋白没有活性,并经实验证明经突变GTP1基因后的毕赤酵母能够在甘油或者甘油、甲醇混合培养基中诱导PAOX1的转录,进而使得外源蛋白得以表达。同时,采用本发明连续添加碳源的培养方式,使ΔGTP1-EGFP在最终收获时,细胞浓度高而且诱导表达的EGFP量高。After adopting the present invention, by mutating the GTP1 gene of Pichia pastoris, the mutated Pichia pastoris gene cannot encode glycerol transporter or the encoded glycerol transporter has no activity, and it is proved by experiments that the Pichia pastoris after the mutation of GTP1 gene Yeast can induce the transcription of PAOX1 in glycerol or a mixed medium of glycerol and methanol, thereby enabling the expression of foreign proteins. At the same time, by adopting the culture method of continuously adding carbon source in the present invention, when ΔGTP1-EGFP is finally harvested, the cell concentration is high and the amount of EGFP induced to express is high.
需要说明的是,本发明所涉及的毕赤酵母为巴斯德毕赤酵母(Pichia pastoris),并于2016年06月28日保藏于中国微生物菌种保藏管理委员会普通微生物中心,地址为北京市朝阳区北辰西路1号院3号,保藏号为CGMCC No.12718。It should be noted that the Pichia pastoris involved in the present invention is Pichia pastoris (Pichia pastoris), and it was preserved in the General Microorganism Center of China Committee for the Collection of Microorganisms on June 28, 2016, and the address is Beijing No. 3, No. 1 Yard, Beichen West Road, Chaoyang District, and the preservation number is CGMCC No.12718.
附图说明Description of drawings
图1-1为本发明的实施例中采用的载体pPICZB的基因结构图。Figure 1-1 is a gene structure diagram of the vector pPICZB used in the examples of the present invention.
图1-2为本发明的实施例中采用的载体pGAPZB的基因结构图。Figures 1-2 are gene structure diagrams of the vector pGAPZB used in the examples of the present invention.
图2为本发明的实施例构建的ΔGTP1菌株和野生型菌株X-33分别采用不同碳源诱导AOX1酶活的测定结果图。图中1采用0.5%甲醇;2采用0.25%甘油;3采用0.5%甘油;4 采用0.25%甘油和0.5%甲醇;5采用0.5%甘油和0.5%甲醇为碳源,上述甲醇、甘油均以添加后体积浓度计。Fig. 2 is a graph showing the measurement results of AOX1 enzyme activity induced by different carbon sources for the ΔGTP1 strain constructed in the embodiment of the present invention and the wild-type strain X-33 respectively. Among the figure 1 adopts 0.5% methanol; 2 adopts 0.25% glycerin; 3 adopts 0.5% glycerin; 4 adopts 0.25% glycerin and 0.5% methanol; Rear volume concentration meter.
图3是本发明的实施例构建的表达菌株ΔGTP1-EGFP、x-EGFP和x-GGEFP分别采用不同碳源培养,分别对24h、48h、72h和96h荧光值的测定结果图。图中各字母代表如表1所示,表1中甲醇、甘油均以添加后的体积浓度计。Fig. 3 is a graph showing the measurement results of the fluorescence values at 24h, 48h, 72h and 96h for the expression strains ΔGTP1-EGFP, x-EGFP and x-GGEFP constructed in the embodiment of the present invention respectively cultured with different carbon sources. Each letter in the figure represents as shown in Table 1, and methanol and glycerin in Table 1 are all calculated by volume concentration after addition.
表1Table 1
图4是本发明的具体实施例构建的ΔGTP1-EGFP菌株和野生型菌株x-GGEFP在不同碳源诱导下的菌株生长曲线图,其中各字母代表的如表1所示。Fig. 4 is a graph showing the strain growth curves of the ΔGTP1-EGFP strain and the wild-type strain x-GGEFP induced by different carbon sources in the specific example of the present invention, where each letter represents as shown in Table 1.
图5是本发明的具体实施例构建的ΔGTP1菌株在优化培养条件下和在0.25%甘油和1%甲醇为碳源诱导下的菌株生长曲线图,其中,甲醇、甘油添加均以体积浓度计;优化培养条件如表2所示。Fig. 5 is a graph showing the growth curve of the ΔGTP1 strain constructed in a specific example of the present invention under optimized culture conditions and induced by 0.25% glycerol and 1% methanol as a carbon source, wherein the addition of methanol and glycerol is based on volume concentration; The optimized culture conditions are shown in Table 2.
表2Table 2
图6是发明的具体实施例构建的ΔGTP1菌株在优化培养条件下和在0.25%甘油和1%甲醇为碳源下诱导EGFP表达的荧光值的测定结果图,其中,96h取样,甲醇、甘油添加均以体积浓度计。Fig. 6 is a graph showing the measurement results of the fluorescence value of EGFP expression induced by the ΔGTP1 bacterial strain constructed in the specific embodiment of the invention under optimized culture conditions and 0.25% glycerol and 1% methanol as carbon source, wherein, sampling at 96h, adding methanol and glycerol All in volume concentration.
图7是在整个发酵周期(0-96h),突变菌株ΔGTP1-EGFP在新的培养方式下与野生型x-GEFP在传统的培养方式下生物量(OD600)的比较。Figure 7 is a comparison of the biomass (OD600) of the mutant strain ΔGTP1-EGFP under the new culture method and the wild-type x-GEFP under the traditional culture method during the whole fermentation cycle (0-96h).
具体实施方式detailed description
下面结合具体实施例,进一步阐述本发明。这些实施例仅用于说明本发明而不用于限定本发明的范围。Below in conjunction with specific embodiment, further illustrate the present invention. These examples are only for illustrating the present invention and are not intended to limit the scope of the present invention.
实施例1 ΔGTP1菌株的构建方法Example 1 Construction method of ΔGTP1 strain
所用的试验材料及其来源包括:The test materials used and their sources include:
DNA Marker、蛋白Marker、限制性内切酶(EcoRI、BamHI、HindIII、XbaI、KpnI、AvrII)、T4 DNA连接酶、LA Taq DNA聚合酶,均购自TaKaRa公司。DNA Marker, protein Marker, restriction enzymes (EcoRI, BamHI, HindIII, XbaI, KpnI, AvrII), T4 DNA ligase, and LA Taq DNA polymerase were all purchased from TaKaRa Company.
质粒提取试剂盒,胶回收试剂盒,PCR产物柱纯化试剂盒,蛋白定量试剂盒,卡那霉素,博来霉素,G418抗生素购自上海生工生物工程公司。Plasmid extraction kits, gel recovery kits, PCR product column purification kits, protein quantification kits, kanamycin, bleomycin, and G418 antibiotics were purchased from Shanghai Sangong Bioengineering Company.
引物由上海生工生物工程公司合成;酵母膏,蛋白胨(OXOID,UK),其余试剂均为国产分析纯。Primers were synthesized by Shanghai Sangong Bioengineering Company; yeast extract, peptone (OXOID, UK), and other reagents were domestic analytical grade.
DNA电泳仪,凝胶成像仪,蛋白电泳仪(北京六一仪器),PCR仪(杭州朗基科学仪器有限公司),分光光度计(上海美诺达仪器有限公司),超声破碎仪(宁波新芝生物科技股份有限公司),酶标仪(Sunnyvale CA US Patent)等。DNA electrophoresis instrument, gel imager, protein electrophoresis instrument (Beijing Liuyi Instrument), PCR instrument (Hangzhou Longji Scientific Instrument Co., Ltd.), spectrophotometer (Shanghai Minorda Instrument Co., Ltd.), ultrasonic breaker (Ningbo New Zhi Biotechnology Co., Ltd.), microplate reader (Sunnyvale CA US Patent), etc.
菌株、质粒和培养基:Strains, plasmids and media:
克隆宿主菌E.coli DH5a,购自上海Sangon公司;毕赤酵母Pichia pastoris X-33(P.pastoris)、毕赤酵母表达载体pGAPZB,pPICZB,购于Invitrogen公司,其中毕赤酵母Pichia pastoris X-33为野生型,以下简称为野生型X-33,大肠杆菌生长培养基LB和筛选培养基低盐LLB、毕赤酵母生长培养基YPD、诱导培养基BMMY、BMGY、BMMGY均由作者参考Invitrogen操作手册配制。Cloning host strain E.coli DH5a was purchased from Shanghai Sangon Company; Pichia pastoris X-33 (P.pastoris), Pichia pastoris expression vector pGAPZB, pPICZB were purchased from Invitrogen Company, wherein Pichia pastoris X- 33 is wild type, hereinafter referred to as wild type X-33, E. coli growth medium LB and screening medium low-salt LLB, Pichia growth medium YPD, induction medium BMMY, BMGY, BMMGY are all operated by the author with reference to Invitrogen Manual preparation.
1.1 GTP1体外缺失片段的构建1.1 Construction of GTP1 deletion fragment in vitro
GTP1基因长1593bp(SEQ ID NO:1),编码530个氨基酸(SEQ ID NO:2),采用PCR,酶切连接的方法,以pMDTM19-T为载体在体外构建了GTP1体外缺失片段(SEQ ID NO:3),分别由GTP1基因上游片段410bp(SEQ ID NO:4)、G418抗性基因1464bp(SEQ ID NO:5)和GTP1基因下游片段363bp(SEQ ID NO:6)组成,所得GTP1体外缺失片段缺失了该基因的整个开放阅读框,避免了GTP1基因编码蛋白的产生。The GTP1 gene is 1593bp long (SEQ ID NO:1) and encodes 530 amino acids (SEQ ID NO:2). The in vitro deletion fragment of GTP1 was constructed in vitro with pMD TM 19-T as a vector by PCR and restriction enzyme digestion ( SEQ ID NO:3), consisting of GTP1 gene upstream fragment 410bp (SEQ ID NO:4), G418 resistance gene 1464bp (SEQ ID NO:5) and GTP1 gene downstream fragment 363bp (SEQ ID NO:6), the obtained The GTP1 in vitro deletion fragment deletes the entire open reading frame of the gene, avoiding the production of the protein encoded by the GTP1 gene.
具体操作如下:The specific operation is as follows:
a、以野生型X-33菌株基因组为模板,扩增GTP1基因上游片段;两段带有EcoRI和BamHI酶切位点,然后双酶切上游片段和质粒pMDTM19-T(TAKARA),T4连接酶16℃连接过夜,产生PGTup质粒。a. Using the genome of the wild-type X-33 strain as a template, amplify the upstream segment of the GTP1 gene; two segments have EcoRI and BamHI restriction sites, and then double-digest the upstream segment and the plasmid pMD TM 19-T (TAKARA), T4 The ligase was ligated overnight at 16°C to generate the PGTup plasmid.
引物为Primers are
GTP1上游F:5‘-GCGAATTCCCGACAGAAGCAACCTCAGATCAACC-3’GTP1 upstream F: 5'-GCGAATTCCCGACAGAAGCAACCTCAGATCAACC-3'
GTP1上游R:5‘-AGGGATCCATGGAGCGTTAATCCGGAGTGTAAGAG-3'GTP1 upstream R: 5'-AGGGATCCATGGAGCGTTAATCCGGAGTGTAAGAG-3'
b、以野生型X-33菌株基因组为模板,扩增GTP1基因下游片段,两段带有XbaI和HindIII酶切位点然后双酶切下游片段和PGTup质粒,连接酶连接产生PGT up-down质粒。b. Using the genome of the wild-type X-33 strain as a template, amplify the downstream fragment of the GTP1 gene, the two fragments have XbaI and HindIII restriction sites, then double-enzyme digest the downstream fragment and the PGTup plasmid, and connect with ligase to generate the PGT up-down plasmid .
引物为Primers are
GTP1下游F:5‘-GCTCTAGAAACATCTCGTTTCGTGTGCTTGTGG-3‘GTP1 downstream F: 5'-GCTCTAGAAACATCTCGTTTCGTGTGCTTGTGG-3'
GTP1下游R:5‘-GCTAAGCTTCTTGCATTCGCTCAGGGCTCATTAC-3’GTP1 downstream R: 5'-GCTAAGCTTCTTGCATTCGCTCAGGGCTCATTAC-3'
c、以pFA6a-KanMX6质粒为模板,扩增出G418抗性基因片段,两段带有BamHI和XbaI酶切位点,用这两种酶双酶切G418抗性基因片段和PGT up-down质粒,连接产生敲除载体pMDTM19-T-GTP1-del。c. Use the pFA6a-KanMX6 plasmid as a template to amplify the G418 resistance gene fragment, two segments with BamHI and XbaI restriction sites, and use these two enzymes to double-digest the G418 resistance gene fragment and PGT up-down plasmid , ligated to generate the knockout vector pMD ™ 19-T-GTP1-del.
引物为Primers are
kanF(G418):5‘-GCGGATCCCCGGTTAATTAA-3’kanF (G418): 5'-GCGGATCCCCGGTTAATTAA-3'
kanR(G418):5‘-GCTCTAGAGAGCTCGTTTAAAC-3’kanR(G418): 5'-GCTCTAGAGAGCTCGTTTAAAC-3'
1.2 GTP1体外缺失片段电转野生型X-33菌株、筛选1.2 Electroporation of wild-type X-33 strain and screening of GTP1 deletion fragment in vitro
电转:2.0Kv脉冲下,将GTP1缺失片段电转野生型X-33菌株。Electroporation: Under 2.0Kv pulse, the GTP1 deletion fragment was electroporated into the wild-type X-33 strain.
筛选:将电转后的野生型X-33菌株涂于添加100ug/ml G418的YPD平板,放在30℃培养箱培养48小时。将平板上长出的单克隆挑至添加100ug/ml G418的YPD液体培养基中,30℃摇床培养后,提取基因组用PCR验证。把PCR检验及测序验证后正确的菌株命名为ΔGTP1。Screening: Spread the electrotransferred wild-type X-33 strain on a YPD plate supplemented with 100ug/ml G418, and culture it in a 30°C incubator for 48 hours. The single clones grown on the plate were picked into YPD liquid medium supplemented with 100ug/ml G418, cultured on a shaker at 30°C, and the genome was extracted and verified by PCR. The correct strain after PCR test and sequencing verification was named ΔGTP1.
实施例2 AOX1酶活的测定Example 2 Determination of AOX1 enzyme activity
将保存于YPD平板的ΔGTP1菌株和野生型X-33接种于YPD液体培养基进行活化,选择对数期离心收集全部菌体,以体积浓度计,重悬于含有0.5%甲醇、0.5%甘油、0.25%甘油、0.5%甘油和0.5%甲醇,0.25%甘油和0.5%甲醇为碳源的YNB液体培养基中,培养48小时后提蛋白,经过Bradford法蛋白定量之后进行AOX1酶活得测定。The ΔGTP1 strain and wild-type X-33 stored on the YPD plate were inoculated in the YPD liquid medium for activation, and all the bacteria were collected by centrifugation in the logarithmic phase, and resuspended in a solution containing 0.5% methanol, 0.5% glycerol, 0.25% glycerol, 0.5% glycerol and 0.5% methanol, 0.25% glycerol and 0.5% methanol as carbon source YNB liquid medium, after 48 hours of culture, the protein was extracted, and the AOX1 enzyme activity was determined after protein quantification by Bradford method.
AOX1酶活得测定具体如下:在酶标板孔中加入100uL100μL醇氧化酶检测溶液,然后加入提取的蛋白5μL,加入3μL甲醇启动反应,在室温反应15分钟~30分钟,直至显色,加入20μL 2M硫酸(含0.1M亚硫酸钠)终止反应,并在492nm测量吸光度,图2为测定结果图,其具体数据如表3所示,ΔGTP1菌株可以在含有甘油和甘油甲醇培养基中诱导AOX1的表达,并且在甘油含量为0.25%时明显提高。The determination of AOX1 enzyme activity is as follows: add 100uL of 100μL alcohol oxidase detection solution to the microplate well, then add 5μL of extracted protein, add 3μL of methanol to start the reaction, react at room temperature for 15-30 minutes, until the color develops, add 20μL 2M sulfuric acid (containing 0.1M sodium sulfite) terminates the reaction, and measures the absorbance at 492nm. Fig. 2 is a measurement result figure, and its specific data are as shown in Table 3. The ΔGTP1 bacterial strain can induce the expression of AOX1 in glycerol and glycerol-methanol medium. And it is obviously improved when the glycerin content is 0.25%.
表3table 3
实施例3 诱导表达外源蛋白Example 3 Induced expression of foreign protein
3.1 EGFP表达载体的构建3.1 Construction of EGFP expression vector
以EGFP为外源蛋白,如图1-1、图1-2所示,在载体pPICZB和pPGAPZB的AOX1启动子和GAP启动子的下游插入EGFP的编码序列,得到EGFP表达载体,分别为PAOX1-EGFP和Pgap-EGFP。Using EGFP as the foreign protein, as shown in Figure 1-1 and Figure 1-2, the EGFP coding sequence was inserted downstream of the AOX1 promoter and GAP promoter of the vectors pPICZB and pPGAPZB to obtain EGFP expression vectors, respectively PAOX1- EGFP and Pgap-EGFP.
具体操作如下:用EcoRI和XhoI分别将质粒pMDTM19-T-EGFP、pPICZB、Pgapzb双酶切;pMDTM19-T-EGFP酶切产物EGFP用胶回收试剂盒回收纯化,酵母表达载体pPICZB和Pgapzb酶切产物用PCR纯化试剂盒回收;用T4连接酶连接片段和质粒,分别得到EGFP表达载体Paox1-EGFP和Pgap-EGFP,转化感受态E.coli DH5α,然后用含有博来霉素抗性的LLB平板筛选。The specific operation is as follows: the plasmids pMD TM 19-T-EGFP, pPICZB, and Pgapzb were double-digested with EcoRI and XhoI respectively; the pMD TM 19-T-EGFP digestion product EGFP was recovered and purified with a gel recovery kit, and the yeast expression vector pPICZB and The Pgapzb digested product was recovered with a PCR purification kit; the fragment and the plasmid were ligated with T4 ligase to obtain EGFP expression vectors Paox1-EGFP and Pgap-EGFP, respectively, and transformed into competent E.coli DH5α, and then bleomycin-resistant LLB plate screening.
3.2表达菌株的筛选3.2 Screening of expression strains
2.0Kv脉冲下,分别将表达载体PAOX1-EGFP电转ΔGTP1菌株和野生型X-33菌株,涂于含有博来霉素抗性的YPD平板上,放在30℃培养箱48小时;将平板长出来的菌株挑至YPD液体培养基中,培养之后提基因组,用PCR验证正确的菌株命名为ΔGTP1-EGFP和x-EGFP;用同样的办法将表达载体Pgap-EGFP电转野生型X-33,最终将正确的菌株命名为x-GGEFP。Under 2.0Kv pulse, the expression vector PAOX1-EGFP was electrotransformed into the ΔGTP1 strain and the wild-type X-33 strain respectively, spread on the YPD plate containing bleomycin resistance, and placed in a 30°C incubator for 48 hours; grow the plate out The strains were picked into YPD liquid medium, and the genome was extracted after cultivation, and the correct strains were named ΔGTP1-EGFP and x-EGFP by PCR; the expression vector Pgap-EGFP was electrotransformed into wild-type X-33 in the same way, and finally the The correct strain was named x-GGEFP.
3.3拷贝数的确定3.3 Determination of copy number
将上述构建好的3个表达菌株分别涂布于含有不同浓度的博来霉素(100μg/mL、200μg/mL、300μg/mL、500μg/mL、800μg/mL、1000μg/mL),最终挑取生长在800μg/mL而在1000μg/m生长很缓慢的平板上的三株菌株。The three expression strains constructed above were coated with different concentrations of bleomycin (100 μg/mL, 200 μg/mL, 300 μg/mL, 500 μg/mL, 800 μg/mL, 1000 μg/mL), and finally picked Three strains growing on plates at 800 μg/mL and very slowly at 1000 μg/m.
3.4多功能酶标仪检测EGFP表达量3.4 Detection of EGFP expression by multifunctional microplate reader
挑取1.4.2获得的的ΔGTP1-EGFP、x-EGFP和x-GGEFP单菌落,接种于装有YPD液体培养基的250mL的摇瓶,30℃、230r/min培养至OD600为2~6,4000r/min离心5min收集菌体,重悬于含有0.5%甲醇、0.5%甘油、0.5%甘油和0.5%甲醇,0.25%甘油和0.5%甲醇和0.25%甘油和1%甲醇为碳源的BMY液体培养基中,隔24h再次添加碳源,每次添加的碳源量相等,均为初次含有的碳源量,并取样品,OD定量后测荧光强度,激发波长为488nm,发射波长为505nm,其结果如表4和图3所示。Pick single colonies of ΔGTP1-EGFP, x-EGFP and x-GGEFP obtained in 1.4.2, inoculate them in a 250mL shake flask filled with YPD liquid medium, and culture them at 30°C and 230r/min until the OD600 is 2-6 Centrifuge at 4000r/min for 5min to collect the bacteria, resuspend in BMY containing 0.5% methanol, 0.5% glycerol, 0.5% glycerol and 0.5% methanol, 0.25% glycerol and 0.5% methanol and 0.25% glycerol and 1% methanol as carbon source In the liquid medium, add carbon source again every 24 hours. The amount of carbon source added each time is equal to the amount of carbon source contained for the first time. Samples are taken, and the fluorescence intensity is measured after OD quantification. The excitation wavelength is 488nm and the emission wavelength is 505nm , and the results are shown in Table 4 and Figure 3.
表4Table 4
从上表和图3中可以看出,野生型菌株只能在甲醇为碳源时,才能诱导AOX1高表达EGFP;菌株ΔGTP1-EGFP能在甘油培养基诱导AOX1表达EGFP,而野生型菌株低表达;在以0.25%甘油和0.5%甲醇为碳源的情况下,ΔGTP1-EGFP诱导AOX1表达的EGFP明显比野生型菌株高,尤其在48h时,高出将近6倍;ΔGTP1-EGFP在96时,其在以0.25%甘油和1%甲醇为碳源比0.25%甘油和0.5%甲醇为碳源诱导表达AOX1高出1.6倍;同时可以看出来诱导型启动子AOX1明显要比组成型启动子GAPDH就表达EGFP时要高出许多。It can be seen from the above table and Figure 3 that the wild-type strain can only induce high expression of EGFP in AOX1 when methanol is the carbon source; the strain ΔGTP1-EGFP can induce AOX1 to express EGFP in glycerol medium, while the wild-type strain has low expression ; In the case of 0.25% glycerol and 0.5% methanol as the carbon source, ΔGTP1-EGFP induced AOX1 expression of EGFP was significantly higher than that of the wild-type strain, especially at 48h, it was nearly 6 times higher; ΔGTP1-EGFP at 96 hours, Its expression of AOX1 induced by 0.25% glycerol and 1% methanol was 1.6 times higher than that of 0.25% glycerol and 0.5% methanol as a carbon source; at the same time, it can be seen that the inducible promoter AOX1 is significantly higher than the constitutive promoter GAPDH Much higher when expressing EGFP.
3.5表达菌株在不同碳源时的生长曲线3.5 Growth curves of expression strains under different carbon sources
挑取1.4.2获得的ΔGTP1-EGFP、x-EGFP和x-GGEFP单菌落,接种于装有YPD培养基的250mL的摇瓶,30℃、230r/min培养至OD600为2~6,4000r/min离心5min收集菌体,然后转接到不同碳源的YNB和YP的液体培养基中,如表5所示,初始定量OD600为0.1,然后每隔8小时取样,测OD600值,其结果如图4所示。Pick single colonies of ΔGTP1-EGFP, x-EGFP and x-GGEFP obtained in 1.4.2, inoculate them in a 250mL shake flask filled with YPD medium, and cultivate them at 30°C and 230r/min until the OD600 is 2-6, 4000r /min centrifuged for 5min to collect the thalline, then transferred to the liquid culture medium of YNB and YP with different carbon sources, as shown in Table 5, the initial quantitative OD600 was 0.1, and then samples were taken every 8 hours to measure the OD600 value, the result As shown in Figure 4.
表5table 5
由图4可知,野生型菌株x-GGEFP在以0.5%甘油为碳源是最终OD可达到32.88,但是由图3可知表达的EGFP量较少;虽然ΔGTP1-EGFP在以1%甲醇为碳源是诱导AOX1表达的EGFP较高,但是其最终的OD为19.65相比在0.5%甘油为碳源的情况下OD差了13;ΔGTP1-EGFP在以0.25%甘油和1%甲醇为碳源时诱导表达EGFP量较高,而且最终OD为26.84。It can be seen from Figure 4 that the final OD of the wild-type strain x-GGEFP can reach 32.88 when using 0.5% glycerol as the carbon source, but it can be seen from Figure 3 that the amount of expressed EGFP is small; The EGFP that induces the expression of AOX1 is higher, but its final OD is 19.65, which is 13 worse than that of 0.5% glycerol as carbon source; ΔGTP1-EGFP is induced when 0.25% glycerol and 1% methanol are used as carbon source The expression of EGFP was higher, and the final OD was 26.84.
实施例4 优化ΔGTP1-EGFP的培养方式Example 4 Optimizing the culture method of ΔGTP1-EGFP
由以上做的实验结果设计新的培养方式,使ΔGTP1-EGFP在最终收获时,细胞浓度高而且诱导表达的EGFP量高,因此设计了新的培养方式,如表2所示,以体积浓度计,0~24h,向液体培养基中添加1%甘油;24h~48h,向液体培养基中添加1%甲醇;48h~72h,向液体培养基中添加1%甲醇和0.25%甘油;72h~96h,向液体培养基中添加1%甲醇和0.25%甘油。同时,用传统的培养方式培养野生型菌株x-EGFP即:在前24h补加1%甘油,以后每隔24h补加一次1%甲醇诱导EGFP表达。Based on the experimental results above, a new culture method was designed so that when ΔGTP1-EGFP was finally harvested, the cell concentration was high and the amount of induced expression of EGFP was high. Therefore, a new culture method was designed, as shown in Table 2, in terms of volume concentration , 0~24h, add 1% glycerol to the liquid medium; 24h~48h, add 1% methanol to the liquid medium; 48h~72h, add 1% methanol and 0.25% glycerol to the liquid medium; 72h~96h , add 1% methanol and 0.25% glycerol to the liquid medium. At the same time, the wild-type strain x-EGFP was cultivated by the traditional culture method, that is, adding 1% glycerol in the first 24 hours, and then adding 1% methanol every 24 hours to induce the expression of EGFP.
由图6可知,在96h时,单位OD600荧光值在以0.25%甘油和1%甲醇为碳源时比优化培养高出10%,但如图5所示,最终细胞浓度优化培养时比以1%甲醇和0.25%甘油为碳源时要高出17%,即最终优化培养后的EGFP总的表达量比以1%甲醇和0.25%甘油为碳源时高出6.36%。It can be seen from Figure 6 that at 96 hours, the unit OD600 fluorescence value was 10% higher than that of the optimal culture when the carbon source was 0.25% glycerol and 1% methanol, but as shown in Figure 5, the final cell concentration was higher than that of the optimal culture when the final cell concentration was 1 When % methanol and 0.25% glycerol were used as carbon sources, it was 17% higher, that is, the total expression level of EGFP after the final optimized culture was 6.36% higher than when 1% methanol and 0.25% glycerol were used as carbon sources.
由图7可知,在整个发酵周期(0-96h),突变菌株ΔGTP1-EGFP在新的培养方式下比野生型x-GEFP在传统的培养方式下生物量(OD600)有显著差异,最终优化培养后的EGFP总的表达量比野生菌在传统培养条件时高出23%。It can be seen from Figure 7 that during the entire fermentation period (0-96h), the biomass (OD600) of the mutant strain ΔGTP1-EGFP in the new culture method was significantly different from that of the wild-type x-GEFP in the traditional culture method, and the final optimal culture The total expression of EGFP was 23% higher than that of wild bacteria in traditional culture conditions.
以上实验证明本申请构建方法所获的表达外源蛋白的毕赤酵母能够在甘油或者甘油甲醇混合培养基中诱导PAOX1表达外源蛋白,并且本申请的上述优化后的诱导表达方法能够有效提高最终细胞浓度的。The above experiments prove that Pichia pastoris expressing exogenous protein obtained by the construction method of this application can induce PAOX1 to express exogenous protein in glycerol or glycerol-methanol mixed medium, and the above-mentioned optimized induction expression method of this application can effectively improve the final cell concentration.
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| CN114410496A (en) * | 2022-02-16 | 2022-04-29 | 江南大学 | Method for improving yield of pichia pastoris exogenous protein |
| CN114657190A (en) * | 2022-04-06 | 2022-06-24 | 暨南大学 | Msn2p as negative regulatory factor in improving protein expression in host cells |
| CN114657197A (en) * | 2022-04-06 | 2022-06-24 | 暨南大学 | Application of Gsm1p as positive regulatory factor in improving protein expression in host cell |
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Cited By (7)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| CN113122461A (en) * | 2019-12-31 | 2021-07-16 | 丰益(上海)生物技术研发中心有限公司 | Single cell protein producing strain and its application |
| CN114410496A (en) * | 2022-02-16 | 2022-04-29 | 江南大学 | Method for improving yield of pichia pastoris exogenous protein |
| CN114410496B (en) * | 2022-02-16 | 2023-10-03 | 江南大学 | A method for improving exogenous protein production in Pichia pastoris |
| CN114657190A (en) * | 2022-04-06 | 2022-06-24 | 暨南大学 | Msn2p as negative regulatory factor in improving protein expression in host cells |
| CN114657197A (en) * | 2022-04-06 | 2022-06-24 | 暨南大学 | Application of Gsm1p as positive regulatory factor in improving protein expression in host cell |
| CN114657197B (en) * | 2022-04-06 | 2023-07-21 | 暨南大学 | Application of Gsm1p as a positive regulator in improving protein expression in host cells |
| CN114657190B (en) * | 2022-04-06 | 2023-08-29 | 暨南大学 | Application of Msn p as negative regulatory factor in improving protein expression in host cells |
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