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CA3128103A1 - Methode d'utilisation de l'expression de genes pour determiner la possibilite d'un resultat clinique du cancer du rein - Google Patents

Methode d'utilisation de l'expression de genes pour determiner la possibilite d'un resultat clinique du cancer du rein

Info

Publication number
CA3128103A1
CA3128103A1 CA3128103A CA3128103A CA3128103A1 CA 3128103 A1 CA3128103 A1 CA 3128103A1 CA 3128103 A CA3128103 A CA 3128103A CA 3128103 A CA3128103 A CA 3128103A CA 3128103 A1 CA3128103 A1 CA 3128103A1
Authority
CA
Canada
Prior art keywords
gene
tumor
expression
expression level
genes
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Granted
Application number
CA3128103A
Other languages
English (en)
Other versions
CA3128103C (fr
Inventor
Wayne Cowens
Steven Shak
Audrey Goddard
Dejan Knezevic
Joffre Baker
Michael C. Kiefer
Tara Maddala
Frederick L. Baehner
Current Assignee (The listed assignees may be inaccurate. Google has not performed a legal analysis and makes no representation or warranty as to the accuracy of the list.)
Genomic Health Inc
Original Assignee
Genomic Health Inc
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Genomic Health Inc filed Critical Genomic Health Inc
Priority to CA3256492A priority Critical patent/CA3256492A1/en
Priority to CA3128103A priority patent/CA3128103C/fr
Publication of CA3128103A1 publication Critical patent/CA3128103A1/fr
Application granted granted Critical
Publication of CA3128103C publication Critical patent/CA3128103C/fr
Active legal-status Critical Current
Anticipated expiration legal-status Critical

Links

Classifications

    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6876—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
    • C12Q1/6883—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for diseases caused by alterations of genetic material
    • C12Q1/6886—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for diseases caused by alterations of genetic material for cancer
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B99/00—Subject matter not provided for in other groups of this subclass
    • G—PHYSICS
    • G01—MEASURING; TESTING
    • G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N33/00—Investigating or analysing materials by specific methods not covered by groups G01N1/00 - G01N31/00
    • G01N33/48—Biological material, e.g. blood, urine; Haemocytometers
    • G01N33/50—Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing
    • G01N33/53—Immunoassay; Biospecific binding assay; Materials therefor
    • G01N33/574—Immunoassay; Biospecific binding assay; Materials therefor for cancer
    • G01N33/57407—Specifically defined cancers
    • G01N33/57438—Specifically defined cancers of liver, pancreas or kidney
    • G—PHYSICS
    • G06—COMPUTING OR CALCULATING; COUNTING
    • G06N—COMPUTING ARRANGEMENTS BASED ON SPECIFIC COMPUTATIONAL MODELS
    • G06N7/00—Computing arrangements based on specific mathematical models
    • G06N7/01—Probabilistic graphical models, e.g. probabilistic networks
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B25/00—ICT specially adapted for hybridisation; ICT specially adapted for gene or protein expression
    • G16B25/10—Gene or protein expression profiling; Expression-ratio estimation or normalisation
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16H—HEALTHCARE INFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR THE HANDLING OR PROCESSING OF MEDICAL OR HEALTHCARE DATA
    • G16H50/00—ICT specially adapted for medical diagnosis, medical simulation or medical data mining; ICT specially adapted for detecting, monitoring or modelling epidemics or pandemics
    • G16H50/20—ICT specially adapted for medical diagnosis, medical simulation or medical data mining; ICT specially adapted for detecting, monitoring or modelling epidemics or pandemics for computer-aided diagnosis, e.g. based on medical expert systems
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q2600/00—Oligonucleotides characterized by their use
    • C12Q2600/112—Disease subtyping, staging or classification
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q2600/00—Oligonucleotides characterized by their use
    • C12Q2600/118—Prognosis of disease development
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q2600/00—Oligonucleotides characterized by their use
    • C12Q2600/158—Expression markers

Landscapes

  • Health & Medical Sciences (AREA)
  • Engineering & Computer Science (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Physics & Mathematics (AREA)
  • Chemical & Material Sciences (AREA)
  • Immunology (AREA)
  • General Health & Medical Sciences (AREA)
  • Molecular Biology (AREA)
  • Biotechnology (AREA)
  • Theoretical Computer Science (AREA)
  • Biomedical Technology (AREA)
  • Genetics & Genomics (AREA)
  • Medical Informatics (AREA)
  • Urology & Nephrology (AREA)
  • Pathology (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • General Physics & Mathematics (AREA)
  • Analytical Chemistry (AREA)
  • Hematology (AREA)
  • Evolutionary Biology (AREA)
  • Bioinformatics & Computational Biology (AREA)
  • Spectroscopy & Molecular Physics (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Organic Chemistry (AREA)
  • Oncology (AREA)
  • Microbiology (AREA)
  • Biochemistry (AREA)
  • Hospice & Palliative Care (AREA)
  • Biophysics (AREA)
  • General Engineering & Computer Science (AREA)
  • Zoology (AREA)
  • Wood Science & Technology (AREA)
  • Data Mining & Analysis (AREA)
  • Public Health (AREA)
  • Cell Biology (AREA)
  • Food Science & Technology (AREA)
  • Medicinal Chemistry (AREA)
  • Gastroenterology & Hepatology (AREA)
  • Algebra (AREA)
  • Pure & Applied Mathematics (AREA)
CA3128103A 2010-01-11 2011-01-07 Méthode d’utilisation de l’expression de gènes pour déterminer la possibilité d’un résultat clinique du cancer du rein Active CA3128103C (fr)

Priority Applications (2)

Application Number Priority Date Filing Date Title
CA3256492A CA3256492A1 (en) 2010-01-11 2011-01-07 Method to use gene expression to determine likelihood of clinical outcome of renal cancer
CA3128103A CA3128103C (fr) 2010-01-11 2011-01-07 Méthode d’utilisation de l’expression de gènes pour déterminer la possibilité d’un résultat clinique du cancer du rein

Applications Claiming Priority (7)

Application Number Priority Date Filing Date Title
US29403810P 2010-01-11 2010-01-11
US61/294,038 2010-01-11
US34623010P 2010-05-19 2010-05-19
US61/346,230 2010-05-19
CA3256492A CA3256492A1 (en) 2010-01-11 2011-01-07 Method to use gene expression to determine likelihood of clinical outcome of renal cancer
CA2783858A CA2783858C (fr) 2010-01-11 2011-01-07 Methode d'utilisation d'une expression genique pour determiner la probabilite du resultat clinique d'un cancer des reins
CA3128103A CA3128103C (fr) 2010-01-11 2011-01-07 Méthode d’utilisation de l’expression de gènes pour déterminer la possibilité d’un résultat clinique du cancer du rein

Related Parent Applications (1)

Application Number Title Priority Date Filing Date
CA2783858A Division CA2783858C (fr) 2010-01-11 2011-01-07 Methode d'utilisation d'une expression genique pour determiner la probabilite du resultat clinique d'un cancer des reins

Related Child Applications (1)

Application Number Title Priority Date Filing Date
CA3256492A Division CA3256492A1 (en) 2010-01-11 2011-01-07 Method to use gene expression to determine likelihood of clinical outcome of renal cancer

Publications (2)

Publication Number Publication Date
CA3128103A1 true CA3128103A1 (fr) 2011-07-14
CA3128103C CA3128103C (fr) 2025-11-18

Family

ID=44258831

Family Applications (3)

Application Number Title Priority Date Filing Date
CA3256492A Pending CA3256492A1 (en) 2010-01-11 2011-01-07 Method to use gene expression to determine likelihood of clinical outcome of renal cancer
CA3128103A Active CA3128103C (fr) 2010-01-11 2011-01-07 Méthode d’utilisation de l’expression de gènes pour déterminer la possibilité d’un résultat clinique du cancer du rein
CA2783858A Active CA2783858C (fr) 2010-01-11 2011-01-07 Methode d'utilisation d'une expression genique pour determiner la probabilite du resultat clinique d'un cancer des reins

Family Applications Before (1)

Application Number Title Priority Date Filing Date
CA3256492A Pending CA3256492A1 (en) 2010-01-11 2011-01-07 Method to use gene expression to determine likelihood of clinical outcome of renal cancer

Family Applications After (1)

Application Number Title Priority Date Filing Date
CA2783858A Active CA2783858C (fr) 2010-01-11 2011-01-07 Methode d'utilisation d'une expression genique pour determiner la probabilite du resultat clinique d'un cancer des reins

Country Status (12)

Country Link
US (4) US9551034B2 (fr)
EP (5) EP3178944B1 (fr)
JP (5) JP6286124B2 (fr)
AU (1) AU2011203977B2 (fr)
CA (3) CA3256492A1 (fr)
DK (1) DK3178944T3 (fr)
ES (2) ES3027507T3 (fr)
IL (6) IL219978A (fr)
MX (3) MX375138B (fr)
NZ (4) NZ719474A (fr)
SG (1) SG181806A1 (fr)
WO (1) WO2011085263A2 (fr)

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Also Published As

Publication number Publication date
JP2021177761A (ja) 2021-11-18
ES2741379T3 (es) 2020-02-10
US20170121780A1 (en) 2017-05-04
JP7307602B2 (ja) 2023-07-12
ES3027507T3 (en) 2025-06-16
EP3029155A3 (fr) 2016-08-31
MX341866B (es) 2016-09-06
WO2011085263A2 (fr) 2011-07-14
US11776664B2 (en) 2023-10-03
IL270151B (en) 2021-03-25
EP3178944A3 (fr) 2017-09-13
MX2020009704A (es) 2020-10-07
US12412642B2 (en) 2025-09-09
EP3831964A3 (fr) 2021-10-20
IL251635A0 (en) 2017-06-29
IL262100A (en) 2018-11-29
JP6546214B2 (ja) 2019-07-17
WO2011085263A3 (fr) 2012-01-12
DK3178944T3 (da) 2019-08-12
MX375138B (es) 2025-03-06
EP3831964A2 (fr) 2021-06-09
US20210166790A1 (en) 2021-06-03
JP2017148059A (ja) 2017-08-31
CA3128103C (fr) 2025-11-18
IL262100B (en) 2019-11-28
US20110171633A1 (en) 2011-07-14
EP3831964B1 (fr) 2025-04-16
IL256335B (en) 2018-12-31
IL251635B (en) 2018-04-30
US20220051755A9 (en) 2022-02-17
JP2019162150A (ja) 2019-09-26
JP7385630B2 (ja) 2023-11-22
CA2783858A1 (fr) 2011-07-14
JP2013516195A (ja) 2013-05-13
MX2012007882A (es) 2012-08-03
AU2011203977A1 (en) 2012-06-21
JP6286124B2 (ja) 2018-02-28
IL219978A0 (en) 2012-07-31
CA3256492A1 (en) 2025-11-29
JP2016174600A (ja) 2016-10-06
US9551034B2 (en) 2017-01-24
IL219978A (en) 2017-04-30
CA2783858C (fr) 2021-09-14
EP2524055A4 (fr) 2013-06-05
IL280689A (en) 2021-03-25
AU2011203977B2 (en) 2015-02-05
EP3029155A2 (fr) 2016-06-08
US20240096451A1 (en) 2024-03-21
US10892038B2 (en) 2021-01-12
EP3561078A1 (fr) 2019-10-30
NZ617003A (en) 2015-04-24
NZ705645A (en) 2016-05-27
EP2524055A2 (fr) 2012-11-21
IL280689B (en) 2022-01-01
NZ600268A (en) 2014-08-29
EP3178944A2 (fr) 2017-06-14
EP3178944B1 (fr) 2019-05-15
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SG181806A1 (en) 2012-07-30

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