CA2607185A1 - Intracellular active agents - Google Patents
Intracellular active agents Download PDFInfo
- Publication number
- CA2607185A1 CA2607185A1 CA002607185A CA2607185A CA2607185A1 CA 2607185 A1 CA2607185 A1 CA 2607185A1 CA 002607185 A CA002607185 A CA 002607185A CA 2607185 A CA2607185 A CA 2607185A CA 2607185 A1 CA2607185 A1 CA 2607185A1
- Authority
- CA
- Canada
- Prior art keywords
- helix
- nucleic acid
- section
- hmga
- nucleotides
- Prior art date
- Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
- Abandoned
Links
- 239000013543 active substance Substances 0.000 title claims abstract description 32
- 230000003834 intracellular effect Effects 0.000 title claims description 56
- 150000007523 nucleic acids Chemical class 0.000 claims description 366
- 102000039446 nucleic acids Human genes 0.000 claims description 365
- 108020004707 nucleic acids Proteins 0.000 claims description 365
- 239000002773 nucleotide Substances 0.000 claims description 266
- 125000003729 nucleotide group Chemical group 0.000 claims description 247
- 102000009012 HMGA Proteins Human genes 0.000 claims description 209
- 108010049069 HMGA Proteins Proteins 0.000 claims description 209
- 230000027455 binding Effects 0.000 claims description 196
- NPOAOTPXWNWTSH-UHFFFAOYSA-N 3-hydroxy-3-methylglutaric acid Chemical group OC(=O)CC(O)(C)CC(O)=O NPOAOTPXWNWTSH-UHFFFAOYSA-N 0.000 claims description 175
- 108091027076 Spiegelmer Proteins 0.000 claims description 152
- 206010028980 Neoplasm Diseases 0.000 claims description 123
- 229920002873 Polyethylenimine Polymers 0.000 claims description 72
- 238000000034 method Methods 0.000 claims description 59
- 239000000693 micelle Substances 0.000 claims description 58
- 201000011510 cancer Diseases 0.000 claims description 57
- 208000037265 diseases, disorders, signs and symptoms Diseases 0.000 claims description 54
- 102000027411 intracellular receptors Human genes 0.000 claims description 53
- 108091008582 intracellular receptors Proteins 0.000 claims description 53
- 239000000203 mixture Substances 0.000 claims description 48
- 102100029009 High mobility group protein HMG-I/HMG-Y Human genes 0.000 claims description 44
- 101000986380 Homo sapiens High mobility group protein HMG-I/HMG-Y Proteins 0.000 claims description 44
- 201000010099 disease Diseases 0.000 claims description 43
- 239000003981 vehicle Substances 0.000 claims description 38
- 102000005962 receptors Human genes 0.000 claims description 34
- 108020003175 receptors Proteins 0.000 claims description 34
- 238000009396 hybridization Methods 0.000 claims description 31
- 239000000543 intermediate Substances 0.000 claims description 29
- 108090000765 processed proteins & peptides Proteins 0.000 claims description 28
- 239000005557 antagonist Substances 0.000 claims description 27
- 239000000556 agonist Substances 0.000 claims description 26
- 238000001514 detection method Methods 0.000 claims description 26
- 108700039143 HMGA2 Proteins 0.000 claims description 24
- 238000011282 treatment Methods 0.000 claims description 24
- 101150073387 Hmga2 gene Proteins 0.000 claims description 23
- 230000015572 biosynthetic process Effects 0.000 claims description 21
- 102000040945 Transcription factor Human genes 0.000 claims description 20
- 108091023040 Transcription factor Proteins 0.000 claims description 20
- 239000003814 drug Substances 0.000 claims description 19
- 102000004196 processed proteins & peptides Human genes 0.000 claims description 18
- 230000004048 modification Effects 0.000 claims description 17
- 238000012986 modification Methods 0.000 claims description 17
- 229920001184 polypeptide Polymers 0.000 claims description 16
- 238000012360 testing method Methods 0.000 claims description 15
- 150000002632 lipids Chemical class 0.000 claims description 14
- 102000018802 High Mobility Group Proteins Human genes 0.000 claims description 13
- 108010052512 High Mobility Group Proteins Proteins 0.000 claims description 13
- 239000008194 pharmaceutical composition Substances 0.000 claims description 13
- 102000004190 Enzymes Human genes 0.000 claims description 12
- 108090000790 Enzymes Proteins 0.000 claims description 12
- 108010076504 Protein Sorting Signals Proteins 0.000 claims description 12
- 206010027476 Metastases Diseases 0.000 claims description 11
- 150000001720 carbohydrates Chemical class 0.000 claims description 11
- 235000014633 carbohydrates Nutrition 0.000 claims description 11
- 238000004519 manufacturing process Methods 0.000 claims description 11
- 230000002503 metabolic effect Effects 0.000 claims description 11
- 206010003210 Arteriosclerosis Diseases 0.000 claims description 10
- 108700039142 HMGA1a Proteins 0.000 claims description 10
- 102000049983 HMGA1a Human genes 0.000 claims description 10
- 208000011775 arteriosclerosis disease Diseases 0.000 claims description 10
- 210000004072 lung Anatomy 0.000 claims description 10
- 102000052510 DNA-Binding Proteins Human genes 0.000 claims description 9
- 108700020911 DNA-Binding Proteins Proteins 0.000 claims description 9
- 210000000481 breast Anatomy 0.000 claims description 9
- 239000003795 chemical substances by application Substances 0.000 claims description 9
- 230000001404 mediated effect Effects 0.000 claims description 9
- 239000002105 nanoparticle Substances 0.000 claims description 8
- 210000000496 pancreas Anatomy 0.000 claims description 8
- 230000010837 receptor-mediated endocytosis Effects 0.000 claims description 8
- 238000012216 screening Methods 0.000 claims description 8
- 102100028999 High mobility group protein HMGI-C Human genes 0.000 claims description 7
- 206010024612 Lipoma Diseases 0.000 claims description 7
- 108010006519 Molecular Chaperones Proteins 0.000 claims description 7
- 206010046798 Uterine leiomyoma Diseases 0.000 claims description 7
- 201000010260 leiomyoma Diseases 0.000 claims description 7
- 239000002502 liposome Substances 0.000 claims description 7
- 230000002265 prevention Effects 0.000 claims description 7
- 201000007954 uterine fibroid Diseases 0.000 claims description 7
- 229920000858 Cyclodextrin Polymers 0.000 claims description 6
- 206010025323 Lymphomas Diseases 0.000 claims description 6
- 208000016160 chondroid hamartoma Diseases 0.000 claims description 6
- 229940097362 cyclodextrins Drugs 0.000 claims description 6
- 239000000032 diagnostic agent Substances 0.000 claims description 6
- 229940039227 diagnostic agent Drugs 0.000 claims description 6
- 208000016018 endometrial polyp Diseases 0.000 claims description 6
- 238000011534 incubation Methods 0.000 claims description 6
- 208000032839 leukemia Diseases 0.000 claims description 6
- 208000009091 myxoma Diseases 0.000 claims description 6
- QJGQUHMNIGDVPM-UHFFFAOYSA-N nitrogen group Chemical group [N] QJGQUHMNIGDVPM-UHFFFAOYSA-N 0.000 claims description 6
- 208000004333 pleomorphic adenoma Diseases 0.000 claims description 6
- 210000003079 salivary gland Anatomy 0.000 claims description 6
- 210000001685 thyroid gland Anatomy 0.000 claims description 6
- 206010046811 uterine polyp Diseases 0.000 claims description 6
- 201000009030 Carcinoma Diseases 0.000 claims description 5
- 208000021994 Diffuse astrocytoma Diseases 0.000 claims description 5
- 208000002966 Giant Cell Tumor of Bone Diseases 0.000 claims description 5
- 208000006050 Hemangiopericytoma Diseases 0.000 claims description 5
- 206010058467 Lung neoplasm malignant Diseases 0.000 claims description 5
- 206010029260 Neuroblastoma Diseases 0.000 claims description 5
- 210000003679 cervix uteri Anatomy 0.000 claims description 5
- 210000001072 colon Anatomy 0.000 claims description 5
- 238000004520 electroporation Methods 0.000 claims description 5
- 201000001169 fibrillary astrocytoma Diseases 0.000 claims description 5
- 208000002154 non-small cell lung carcinoma Diseases 0.000 claims description 5
- 210000001672 ovary Anatomy 0.000 claims description 5
- 210000002307 prostate Anatomy 0.000 claims description 5
- 210000000664 rectum Anatomy 0.000 claims description 5
- 210000002784 stomach Anatomy 0.000 claims description 5
- 230000009385 viral infection Effects 0.000 claims description 5
- 208000011691 Burkitt lymphomas Diseases 0.000 claims description 4
- 108091028043 Nucleic acid sequence Proteins 0.000 claims description 4
- 208000000453 Skin Neoplasms Diseases 0.000 claims description 4
- 239000000412 dendrimer Substances 0.000 claims description 4
- 229920000736 dendritic polymer Polymers 0.000 claims description 4
- 230000000799 fusogenic effect Effects 0.000 claims description 4
- 201000005202 lung cancer Diseases 0.000 claims description 4
- 208000020816 lung neoplasm Diseases 0.000 claims description 4
- 239000011859 microparticle Substances 0.000 claims description 4
- 201000000849 skin cancer Diseases 0.000 claims description 4
- 239000007790 solid phase Substances 0.000 claims description 4
- 230000001960 triggered effect Effects 0.000 claims description 4
- 238000002604 ultrasonography Methods 0.000 claims description 4
- 239000012071 phase Substances 0.000 claims description 3
- 125000002467 phosphate group Chemical group [H]OP(=O)(O[H])O[*] 0.000 claims description 3
- 239000003937 drug carrier Substances 0.000 claims description 2
- 230000035939 shock Effects 0.000 claims description 2
- 108700039144 HMGA1b Proteins 0.000 claims 6
- 210000004027 cell Anatomy 0.000 description 153
- 108090000623 proteins and genes Proteins 0.000 description 91
- 102000004169 proteins and genes Human genes 0.000 description 59
- 235000018102 proteins Nutrition 0.000 description 58
- 108091023037 Aptamer Proteins 0.000 description 54
- 241000282414 Homo sapiens Species 0.000 description 51
- 230000014509 gene expression Effects 0.000 description 43
- 210000001519 tissue Anatomy 0.000 description 32
- 239000000872 buffer Substances 0.000 description 31
- 230000000694 effects Effects 0.000 description 31
- 230000003993 interaction Effects 0.000 description 29
- 108020004414 DNA Proteins 0.000 description 23
- 238000003556 assay Methods 0.000 description 20
- 210000000170 cell membrane Anatomy 0.000 description 20
- 238000009826 distribution Methods 0.000 description 20
- 229920001223 polyethylene glycol Polymers 0.000 description 20
- 108700020796 Oncogene Proteins 0.000 description 19
- 150000001875 compounds Chemical class 0.000 description 19
- 230000035755 proliferation Effects 0.000 description 19
- 102000049982 HMGA2 Human genes 0.000 description 18
- 239000002202 Polyethylene glycol Substances 0.000 description 18
- 241001465754 Metazoa Species 0.000 description 17
- 239000000243 solution Substances 0.000 description 17
- 108091032973 (ribonucleotides)n+m Proteins 0.000 description 16
- 108091034117 Oligonucleotide Proteins 0.000 description 16
- 210000000172 cytosol Anatomy 0.000 description 16
- 230000005764 inhibitory process Effects 0.000 description 16
- 230000032258 transport Effects 0.000 description 16
- 102000043276 Oncogene Human genes 0.000 description 15
- 101100184710 Xenopus laevis cdc25-1-a gene Proteins 0.000 description 15
- 238000013459 approach Methods 0.000 description 15
- 238000004904 shortening Methods 0.000 description 15
- 108010029485 Protein Isoforms Proteins 0.000 description 14
- 102000001708 Protein Isoforms Human genes 0.000 description 14
- 210000002381 plasma Anatomy 0.000 description 14
- 239000000523 sample Substances 0.000 description 14
- 230000004614 tumor growth Effects 0.000 description 14
- JLCPHMBAVCMARE-UHFFFAOYSA-N [3-[[3-[[3-[[3-[[3-[[3-[[3-[[3-[[3-[[3-[[3-[[5-(2-amino-6-oxo-1H-purin-9-yl)-3-[[3-[[3-[[3-[[3-[[3-[[5-(2-amino-6-oxo-1H-purin-9-yl)-3-[[5-(2-amino-6-oxo-1H-purin-9-yl)-3-hydroxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(6-aminopurin-9-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(6-aminopurin-9-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(6-aminopurin-9-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(6-aminopurin-9-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(4-amino-2-oxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(6-aminopurin-9-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(6-aminopurin-9-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(4-amino-2-oxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(4-amino-2-oxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(4-amino-2-oxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(6-aminopurin-9-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(4-amino-2-oxopyrimidin-1-yl)oxolan-2-yl]methyl [5-(6-aminopurin-9-yl)-2-(hydroxymethyl)oxolan-3-yl] hydrogen phosphate Polymers Cc1cn(C2CC(OP(O)(=O)OCC3OC(CC3OP(O)(=O)OCC3OC(CC3O)n3cnc4c3nc(N)[nH]c4=O)n3cnc4c3nc(N)[nH]c4=O)C(COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3CO)n3cnc4c(N)ncnc34)n3ccc(N)nc3=O)n3cnc4c(N)ncnc34)n3ccc(N)nc3=O)n3ccc(N)nc3=O)n3ccc(N)nc3=O)n3cnc4c(N)ncnc34)n3cnc4c(N)ncnc34)n3cc(C)c(=O)[nH]c3=O)n3cc(C)c(=O)[nH]c3=O)n3ccc(N)nc3=O)n3cc(C)c(=O)[nH]c3=O)n3cnc4c3nc(N)[nH]c4=O)n3cnc4c(N)ncnc34)n3cnc4c(N)ncnc34)n3cnc4c(N)ncnc34)n3cnc4c(N)ncnc34)O2)c(=O)[nH]c1=O JLCPHMBAVCMARE-UHFFFAOYSA-N 0.000 description 13
- 238000003745 diagnosis Methods 0.000 description 12
- 210000001163 endosome Anatomy 0.000 description 12
- IJGRMHOSHXDMSA-UHFFFAOYSA-N nitrogen Substances N#N IJGRMHOSHXDMSA-UHFFFAOYSA-N 0.000 description 12
- 238000001890 transfection Methods 0.000 description 12
- 241000700605 Viruses Species 0.000 description 11
- 230000033228 biological regulation Effects 0.000 description 11
- 230000000875 corresponding effect Effects 0.000 description 11
- 230000008878 coupling Effects 0.000 description 11
- 238000010168 coupling process Methods 0.000 description 11
- 238000005859 coupling reaction Methods 0.000 description 11
- 239000000126 substance Substances 0.000 description 11
- LFQSCWFLJHTTHZ-UHFFFAOYSA-N Ethanol Chemical compound CCO LFQSCWFLJHTTHZ-UHFFFAOYSA-N 0.000 description 10
- 229920001213 Polysorbate 20 Polymers 0.000 description 10
- FAPWRFPIFSIZLT-UHFFFAOYSA-M Sodium chloride Chemical compound [Na+].[Cl-] FAPWRFPIFSIZLT-UHFFFAOYSA-M 0.000 description 10
- 230000006870 function Effects 0.000 description 10
- 239000000499 gel Substances 0.000 description 10
- 239000012528 membrane Substances 0.000 description 10
- 239000000256 polyoxyethylene sorbitan monolaurate Substances 0.000 description 10
- 235000010486 polyoxyethylene sorbitan monolaurate Nutrition 0.000 description 10
- 108010090804 Streptavidin Proteins 0.000 description 9
- 229940024606 amino acid Drugs 0.000 description 9
- 235000001014 amino acid Nutrition 0.000 description 9
- 150000001413 amino acids Chemical class 0.000 description 9
- 238000004458 analytical method Methods 0.000 description 9
- 230000008859 change Effects 0.000 description 9
- 210000003527 eukaryotic cell Anatomy 0.000 description 9
- 238000002474 experimental method Methods 0.000 description 9
- 238000001727 in vivo Methods 0.000 description 9
- 229910052757 nitrogen Inorganic materials 0.000 description 9
- 210000000056 organ Anatomy 0.000 description 9
- 238000012856 packing Methods 0.000 description 9
- 230000008569 process Effects 0.000 description 9
- 239000000047 product Substances 0.000 description 9
- 101710088194 Dehydrogenase Proteins 0.000 description 8
- 102000003960 Ligases Human genes 0.000 description 8
- 108090000364 Ligases Proteins 0.000 description 8
- 241000699670 Mus sp. Species 0.000 description 8
- 239000011575 calcium Substances 0.000 description 8
- 239000006143 cell culture medium Substances 0.000 description 8
- 229940088598 enzyme Drugs 0.000 description 8
- 239000012634 fragment Substances 0.000 description 8
- 108020001507 fusion proteins Proteins 0.000 description 8
- 102000037865 fusion proteins Human genes 0.000 description 8
- 238000000338 in vitro Methods 0.000 description 8
- 230000001965 increasing effect Effects 0.000 description 8
- 108020004999 messenger RNA Proteins 0.000 description 8
- 238000000159 protein binding assay Methods 0.000 description 8
- 238000013518 transcription Methods 0.000 description 8
- 230000035897 transcription Effects 0.000 description 8
- 108010001336 Horseradish Peroxidase Proteins 0.000 description 7
- 101710163270 Nuclease Proteins 0.000 description 7
- 101000595993 Phyllomedusa sauvagei Phylloseptin-S1 Proteins 0.000 description 7
- 230000000692 anti-sense effect Effects 0.000 description 7
- 230000000295 complement effect Effects 0.000 description 7
- 230000012010 growth Effects 0.000 description 7
- PXHVJJICTQNCMI-UHFFFAOYSA-N nickel Substances [Ni] PXHVJJICTQNCMI-UHFFFAOYSA-N 0.000 description 7
- 238000001556 precipitation Methods 0.000 description 7
- 238000005406 washing Methods 0.000 description 7
- YBJHBAHKTGYVGT-ZKWXMUAHSA-N (+)-Biotin Chemical compound N1C(=O)N[C@@H]2[C@H](CCCCC(=O)O)SC[C@@H]21 YBJHBAHKTGYVGT-ZKWXMUAHSA-N 0.000 description 6
- -1 Aspartate oxidosqualene Chemical compound 0.000 description 6
- TWRXJAOTZQYOKJ-UHFFFAOYSA-L Magnesium chloride Chemical compound [Mg+2].[Cl-].[Cl-] TWRXJAOTZQYOKJ-UHFFFAOYSA-L 0.000 description 6
- 238000009510 drug design Methods 0.000 description 6
- 239000000975 dye Substances 0.000 description 6
- 238000005516 engineering process Methods 0.000 description 6
- 238000009472 formulation Methods 0.000 description 6
- RAXXELZNTBOGNW-UHFFFAOYSA-N imidazole Natural products C1=CNC=N1 RAXXELZNTBOGNW-UHFFFAOYSA-N 0.000 description 6
- 238000011835 investigation Methods 0.000 description 6
- 239000011777 magnesium Substances 0.000 description 6
- 230000007246 mechanism Effects 0.000 description 6
- 210000001236 prokaryotic cell Anatomy 0.000 description 6
- 230000009467 reduction Effects 0.000 description 6
- 230000002829 reductive effect Effects 0.000 description 6
- 239000000758 substrate Substances 0.000 description 6
- 230000001225 therapeutic effect Effects 0.000 description 6
- 238000012546 transfer Methods 0.000 description 6
- 108020004774 Alkaline Phosphatase Proteins 0.000 description 5
- 102000002260 Alkaline Phosphatase Human genes 0.000 description 5
- 102100032912 CD44 antigen Human genes 0.000 description 5
- 102100031181 Glyceraldehyde-3-phosphate dehydrogenase Human genes 0.000 description 5
- 101000936546 Homo sapiens Anion exchange protein 2 Proteins 0.000 description 5
- 101000868273 Homo sapiens CD44 antigen Proteins 0.000 description 5
- 108020004711 Nucleic Acid Probes Proteins 0.000 description 5
- 229910019142 PO4 Inorganic materials 0.000 description 5
- PLXBWHJQWKZRKG-UHFFFAOYSA-N Resazurin Chemical compound C1=CC(=O)C=C2OC3=CC(O)=CC=C3[N+]([O-])=C21 PLXBWHJQWKZRKG-UHFFFAOYSA-N 0.000 description 5
- 102000004357 Transferases Human genes 0.000 description 5
- 108090000992 Transferases Proteins 0.000 description 5
- 230000002378 acidificating effect Effects 0.000 description 5
- 230000004075 alteration Effects 0.000 description 5
- 239000011230 binding agent Substances 0.000 description 5
- 210000004899 c-terminal region Anatomy 0.000 description 5
- 231100000504 carcinogenesis Toxicity 0.000 description 5
- 238000006243 chemical reaction Methods 0.000 description 5
- 231100000673 dose–response relationship Toxicity 0.000 description 5
- 238000001415 gene therapy Methods 0.000 description 5
- 108020004445 glyceraldehyde-3-phosphate dehydrogenase Proteins 0.000 description 5
- 230000010189 intracellular transport Effects 0.000 description 5
- 230000001394 metastastic effect Effects 0.000 description 5
- 206010061289 metastatic neoplasm Diseases 0.000 description 5
- 239000002853 nucleic acid probe Substances 0.000 description 5
- 230000002018 overexpression Effects 0.000 description 5
- NBIIXXVUZAFLBC-UHFFFAOYSA-K phosphate Chemical compound [O-]P([O-])([O-])=O NBIIXXVUZAFLBC-UHFFFAOYSA-K 0.000 description 5
- 239000010452 phosphate Substances 0.000 description 5
- 239000002243 precursor Substances 0.000 description 5
- 239000011780 sodium chloride Substances 0.000 description 5
- 239000006228 supernatant Substances 0.000 description 5
- 238000003786 synthesis reaction Methods 0.000 description 5
- 241000894006 Bacteria Species 0.000 description 4
- 101100026251 Caenorhabditis elegans atf-2 gene Proteins 0.000 description 4
- 208000005623 Carcinogenesis Diseases 0.000 description 4
- 102000006786 Chloride-Bicarbonate Antiporters Human genes 0.000 description 4
- 102000053602 DNA Human genes 0.000 description 4
- 230000004568 DNA-binding Effects 0.000 description 4
- 101100352278 Danio rerio pitx2 gene Proteins 0.000 description 4
- IAZDPXIOMUYVGZ-UHFFFAOYSA-N Dimethylsulphoxide Chemical compound CS(C)=O IAZDPXIOMUYVGZ-UHFFFAOYSA-N 0.000 description 4
- KCXVZYZYPLLWCC-UHFFFAOYSA-N EDTA Chemical compound OC(=O)CN(CC(O)=O)CCN(CC(O)=O)CC(O)=O KCXVZYZYPLLWCC-UHFFFAOYSA-N 0.000 description 4
- WQZGKKKJIJFFOK-GASJEMHNSA-N Glucose Natural products OC[C@H]1OC(O)[C@H](O)[C@@H](O)[C@@H]1O WQZGKKKJIJFFOK-GASJEMHNSA-N 0.000 description 4
- 108010020382 Hepatocyte Nuclear Factor 1-alpha Proteins 0.000 description 4
- 102100022057 Hepatocyte nuclear factor 1-alpha Human genes 0.000 description 4
- 101150107737 Hmga1 gene Proteins 0.000 description 4
- 101001045846 Homo sapiens Histone-lysine N-methyltransferase 2A Proteins 0.000 description 4
- 101000736088 Homo sapiens PC4 and SFRS1-interacting protein Proteins 0.000 description 4
- 101000572976 Homo sapiens POU domain, class 2, transcription factor 3 Proteins 0.000 description 4
- 101001093899 Homo sapiens Retinoic acid receptor RXR-alpha Proteins 0.000 description 4
- 241000713772 Human immunodeficiency virus 1 Species 0.000 description 4
- 102000008109 Mixed Function Oxygenases Human genes 0.000 description 4
- 108010074633 Mixed Function Oxygenases Proteins 0.000 description 4
- 101100189471 Mus musculus Pbx1 gene Proteins 0.000 description 4
- 108020005187 Oligonucleotide Probes Proteins 0.000 description 4
- 102000004316 Oxidoreductases Human genes 0.000 description 4
- 108090000854 Oxidoreductases Proteins 0.000 description 4
- 102100036220 PC4 and SFRS1-interacting protein Human genes 0.000 description 4
- 102100026466 POU domain, class 2, transcription factor 3 Human genes 0.000 description 4
- 108091000080 Phosphotransferase Proteins 0.000 description 4
- 102100035178 Retinoic acid receptor RXR-alpha Human genes 0.000 description 4
- 108091006260 SLC4A2 Proteins 0.000 description 4
- 108010044012 STAT1 Transcription Factor Proteins 0.000 description 4
- 102100029904 Signal transducer and activator of transcription 1-alpha/beta Human genes 0.000 description 4
- 102100024026 Transcription factor E2F1 Human genes 0.000 description 4
- 102100023132 Transcription factor Jun Human genes 0.000 description 4
- 239000007983 Tris buffer Substances 0.000 description 4
- 108700005077 Viral Genes Proteins 0.000 description 4
- 230000001093 anti-cancer Effects 0.000 description 4
- 230000036952 cancer formation Effects 0.000 description 4
- 210000003855 cell nucleus Anatomy 0.000 description 4
- HVYWMOMLDIMFJA-DPAQBDIFSA-N cholesterol Chemical compound C1C=C2C[C@@H](O)CC[C@]2(C)[C@@H]2[C@@H]1[C@@H]1CC[C@H]([C@H](C)CCCC(C)C)[C@@]1(C)CC2 HVYWMOMLDIMFJA-DPAQBDIFSA-N 0.000 description 4
- 230000002860 competitive effect Effects 0.000 description 4
- 239000000470 constituent Substances 0.000 description 4
- 230000001276 controlling effect Effects 0.000 description 4
- 238000010494 dissociation reaction Methods 0.000 description 4
- 230000005593 dissociations Effects 0.000 description 4
- 229940079593 drug Drugs 0.000 description 4
- 230000007717 exclusion Effects 0.000 description 4
- 239000008103 glucose Substances 0.000 description 4
- 239000003102 growth factor Substances 0.000 description 4
- 238000002347 injection Methods 0.000 description 4
- 239000007924 injection Substances 0.000 description 4
- 210000003734 kidney Anatomy 0.000 description 4
- 210000004185 liver Anatomy 0.000 description 4
- 230000004807 localization Effects 0.000 description 4
- 230000009401 metastasis Effects 0.000 description 4
- 230000009149 molecular binding Effects 0.000 description 4
- 239000002751 oligonucleotide probe Substances 0.000 description 4
- 239000008188 pellet Substances 0.000 description 4
- 150000003904 phospholipids Chemical class 0.000 description 4
- 102000020233 phosphotransferase Human genes 0.000 description 4
- 125000002924 primary amino group Chemical group [H]N([H])* 0.000 description 4
- 238000000746 purification Methods 0.000 description 4
- 230000002285 radioactive effect Effects 0.000 description 4
- 230000003252 repetitive effect Effects 0.000 description 4
- 238000003757 reverse transcription PCR Methods 0.000 description 4
- 238000000926 separation method Methods 0.000 description 4
- 150000003384 small molecules Chemical class 0.000 description 4
- LENZDBCJOHFCAS-UHFFFAOYSA-N tris Chemical compound OCC(N)(CO)CO LENZDBCJOHFCAS-UHFFFAOYSA-N 0.000 description 4
- HBAQYPYDRFILMT-UHFFFAOYSA-N 8-[3-(1-cyclopropylpyrazol-4-yl)-1H-pyrazolo[4,3-d]pyrimidin-5-yl]-3-methyl-3,8-diazabicyclo[3.2.1]octan-2-one Chemical class C1(CC1)N1N=CC(=C1)C1=NNC2=C1N=C(N=C2)N1C2C(N(CC1CC2)C)=O HBAQYPYDRFILMT-UHFFFAOYSA-N 0.000 description 3
- 102100027468 Anion exchange protein 2 Human genes 0.000 description 3
- 101000719121 Arabidopsis thaliana Protein MEI2-like 1 Proteins 0.000 description 3
- 206010006187 Breast cancer Diseases 0.000 description 3
- 208000026310 Breast neoplasm Diseases 0.000 description 3
- 102000004031 Carboxy-Lyases Human genes 0.000 description 3
- 108090000489 Carboxy-Lyases Proteins 0.000 description 3
- 101000986346 Chironomus tentans High mobility group protein I Proteins 0.000 description 3
- 101150096607 Fosl2 gene Proteins 0.000 description 3
- 102100022103 Histone-lysine N-methyltransferase 2A Human genes 0.000 description 3
- 101000588302 Homo sapiens Nuclear factor erythroid 2-related factor 2 Proteins 0.000 description 3
- 101000572986 Homo sapiens POU domain, class 3, transcription factor 2 Proteins 0.000 description 3
- 101000756346 Homo sapiens RE1-silencing transcription factor Proteins 0.000 description 3
- 101000857677 Homo sapiens Runt-related transcription factor 1 Proteins 0.000 description 3
- 241000700588 Human alphaherpesvirus 1 Species 0.000 description 3
- 101150069805 MAFG gene Proteins 0.000 description 3
- 102000001947 MafK Transcription Factor Human genes 0.000 description 3
- 108010040548 MafK Transcription Factor Proteins 0.000 description 3
- 108010074852 NF-kappa B p52 Subunit Proteins 0.000 description 3
- 102000008125 NF-kappa B p52 Subunit Human genes 0.000 description 3
- 102100031701 Nuclear factor erythroid 2-related factor 2 Human genes 0.000 description 3
- 102100026459 POU domain, class 3, transcription factor 2 Human genes 0.000 description 3
- 102000035195 Peptidases Human genes 0.000 description 3
- 108091005804 Peptidases Proteins 0.000 description 3
- 239000004365 Protease Substances 0.000 description 3
- 108010001859 Proto-Oncogene Proteins c-rel Proteins 0.000 description 3
- 102000000850 Proto-Oncogene Proteins c-rel Human genes 0.000 description 3
- 102100022940 RE1-silencing transcription factor Human genes 0.000 description 3
- 239000012980 RPMI-1640 medium Substances 0.000 description 3
- 102100025373 Runt-related transcription factor 1 Human genes 0.000 description 3
- 108010017324 STAT3 Transcription Factor Proteins 0.000 description 3
- 102100024040 Signal transducer and activator of transcription 3 Human genes 0.000 description 3
- 239000006180 TBST buffer Substances 0.000 description 3
- 102100035222 Transcription initiation factor TFIID subunit 1 Human genes 0.000 description 3
- 239000002253 acid Substances 0.000 description 3
- 230000009471 action Effects 0.000 description 3
- 210000000577 adipose tissue Anatomy 0.000 description 3
- 230000003321 amplification Effects 0.000 description 3
- 238000010171 animal model Methods 0.000 description 3
- 230000001745 anti-biotin effect Effects 0.000 description 3
- 230000006907 apoptotic process Effects 0.000 description 3
- 230000008033 biological extinction Effects 0.000 description 3
- 239000000090 biomarker Substances 0.000 description 3
- 229960002685 biotin Drugs 0.000 description 3
- 235000020958 biotin Nutrition 0.000 description 3
- 239000011616 biotin Substances 0.000 description 3
- 210000004204 blood vessel Anatomy 0.000 description 3
- 210000001124 body fluid Anatomy 0.000 description 3
- 239000010839 body fluid Substances 0.000 description 3
- 230000015556 catabolic process Effects 0.000 description 3
- 125000002091 cationic group Chemical group 0.000 description 3
- 238000004113 cell culture Methods 0.000 description 3
- 230000022131 cell cycle Effects 0.000 description 3
- 238000001516 cell proliferation assay Methods 0.000 description 3
- 230000001413 cellular effect Effects 0.000 description 3
- 239000003153 chemical reaction reagent Substances 0.000 description 3
- 230000002759 chromosomal effect Effects 0.000 description 3
- 210000000349 chromosome Anatomy 0.000 description 3
- 230000009260 cross reactivity Effects 0.000 description 3
- 230000001419 dependent effect Effects 0.000 description 3
- 235000011180 diphosphates Nutrition 0.000 description 3
- 208000035475 disorder Diseases 0.000 description 3
- 238000010828 elution Methods 0.000 description 3
- 230000013020 embryo development Effects 0.000 description 3
- 230000012202 endocytosis Effects 0.000 description 3
- 230000002255 enzymatic effect Effects 0.000 description 3
- 210000000232 gallbladder Anatomy 0.000 description 3
- 239000003112 inhibitor Substances 0.000 description 3
- 238000011813 knockout mouse model Methods 0.000 description 3
- 239000003446 ligand Substances 0.000 description 3
- 230000000670 limiting effect Effects 0.000 description 3
- 210000003712 lysosome Anatomy 0.000 description 3
- 230000001868 lysosomic effect Effects 0.000 description 3
- 229910001629 magnesium chloride Inorganic materials 0.000 description 3
- 230000001613 neoplastic effect Effects 0.000 description 3
- 238000003199 nucleic acid amplification method Methods 0.000 description 3
- 210000004940 nucleus Anatomy 0.000 description 3
- 239000002245 particle Substances 0.000 description 3
- 230000006320 pegylation Effects 0.000 description 3
- 239000013612 plasmid Substances 0.000 description 3
- 238000002264 polyacrylamide gel electrophoresis Methods 0.000 description 3
- 238000004445 quantitative analysis Methods 0.000 description 3
- 230000002441 reversible effect Effects 0.000 description 3
- 238000012552 review Methods 0.000 description 3
- 229920002477 rna polymer Polymers 0.000 description 3
- 210000000329 smooth muscle myocyte Anatomy 0.000 description 3
- 238000010254 subcutaneous injection Methods 0.000 description 3
- 239000000725 suspension Substances 0.000 description 3
- 230000009466 transformation Effects 0.000 description 3
- 208000029729 tumor suppressor gene on chromosome 11 Diseases 0.000 description 3
- 239000011534 wash buffer Substances 0.000 description 3
- 238000001262 western blot Methods 0.000 description 3
- 239000002023 wood Substances 0.000 description 3
- 102000004899 14-3-3 Proteins Human genes 0.000 description 2
- 125000002124 5'-adenosyl group Chemical group N1=CN=C2N(C=NC2=C1N)[C@H]1[C@H](O)[C@H](O)[C@H](O1)C* 0.000 description 2
- 108091006112 ATPases Proteins 0.000 description 2
- 102000057234 Acyl transferases Human genes 0.000 description 2
- 108700016155 Acyl transferases Proteins 0.000 description 2
- 102000057290 Adenosine Triphosphatases Human genes 0.000 description 2
- USFZMSVCRYTOJT-UHFFFAOYSA-N Ammonium acetate Chemical compound N.CC(O)=O USFZMSVCRYTOJT-UHFFFAOYSA-N 0.000 description 2
- 239000005695 Ammonium acetate Substances 0.000 description 2
- 108020005544 Antisense RNA Proteins 0.000 description 2
- 108090001008 Avidin Proteins 0.000 description 2
- 208000023514 Barrett esophagus Diseases 0.000 description 2
- 102000004506 Blood Proteins Human genes 0.000 description 2
- 108010017384 Blood Proteins Proteins 0.000 description 2
- 101710132601 Capsid protein Proteins 0.000 description 2
- 108010078791 Carrier Proteins Proteins 0.000 description 2
- 108090000994 Catalytic RNA Proteins 0.000 description 2
- 102000053642 Catalytic RNA Human genes 0.000 description 2
- VEXZGXHMUGYJMC-UHFFFAOYSA-M Chloride anion Chemical compound [Cl-] VEXZGXHMUGYJMC-UHFFFAOYSA-M 0.000 description 2
- 108020004705 Codon Proteins 0.000 description 2
- 229920001651 Cyanoacrylate Polymers 0.000 description 2
- 239000003298 DNA probe Substances 0.000 description 2
- 230000033616 DNA repair Effects 0.000 description 2
- 102100022812 DNA-binding protein RFX2 Human genes 0.000 description 2
- 102100020986 DNA-binding protein RFX5 Human genes 0.000 description 2
- 102100021044 DNA-binding protein RFXANK Human genes 0.000 description 2
- 101100480530 Danio rerio tal1 gene Proteins 0.000 description 2
- 102100035078 ETS-related transcription factor Elf-2 Human genes 0.000 description 2
- 108700037623 ETS-related transcription factor Elf-3 Proteins 0.000 description 2
- 102100035079 ETS-related transcription factor Elf-3 Human genes 0.000 description 2
- 102100033167 Elastin Human genes 0.000 description 2
- 108010014258 Elastin Proteins 0.000 description 2
- 102100031702 Endoplasmic reticulum membrane sensor NFE2L1 Human genes 0.000 description 2
- 102100031690 Erythroid transcription factor Human genes 0.000 description 2
- 108010041356 Estrogen Receptor beta Proteins 0.000 description 2
- 102100029951 Estrogen receptor beta Human genes 0.000 description 2
- 102100035134 Forkhead box protein J2 Human genes 0.000 description 2
- 102100023374 Forkhead box protein M1 Human genes 0.000 description 2
- 102000003817 Fos-related antigen 1 Human genes 0.000 description 2
- 108090000123 Fos-related antigen 1 Proteins 0.000 description 2
- 102000001390 Fructose-Bisphosphate Aldolase Human genes 0.000 description 2
- 108010068561 Fructose-Bisphosphate Aldolase Proteins 0.000 description 2
- 102100033295 Glial cell line-derived neurotrophic factor Human genes 0.000 description 2
- XYZZKVRWGOWVGO-UHFFFAOYSA-N Glycerol-phosphate Chemical compound OP(O)(O)=O.OCC(O)CO XYZZKVRWGOWVGO-UHFFFAOYSA-N 0.000 description 2
- DHMQDGOQFOQNFH-UHFFFAOYSA-N Glycine Chemical compound NCC(O)=O DHMQDGOQFOQNFH-UHFFFAOYSA-N 0.000 description 2
- 102000000849 HMGB Proteins Human genes 0.000 description 2
- 108010001860 HMGB Proteins Proteins 0.000 description 2
- 108010044429 HMGN Proteins Proteins 0.000 description 2
- 102000006491 HMGN Proteins Human genes 0.000 description 2
- 101150032268 HOXB7 gene Proteins 0.000 description 2
- 101150089759 HOXB8 gene Proteins 0.000 description 2
- 102100022846 Histone acetyltransferase KAT2B Human genes 0.000 description 2
- 102100038970 Histone-lysine N-methyltransferase EZH2 Human genes 0.000 description 2
- 102100022649 Homeobox protein Hox-A6 Human genes 0.000 description 2
- 101000756799 Homo sapiens DNA-binding protein RFX2 Proteins 0.000 description 2
- 101001075432 Homo sapiens DNA-binding protein RFX5 Proteins 0.000 description 2
- 101001075464 Homo sapiens DNA-binding protein RFXANK Proteins 0.000 description 2
- 101000877377 Homo sapiens ETS-related transcription factor Elf-2 Proteins 0.000 description 2
- 101000907578 Homo sapiens Forkhead box protein M1 Proteins 0.000 description 2
- 101000986379 Homo sapiens High mobility group protein HMGI-C Proteins 0.000 description 2
- 101001047006 Homo sapiens Histone acetyltransferase KAT2B Proteins 0.000 description 2
- 101000882127 Homo sapiens Histone-lysine N-methyltransferase EZH2 Proteins 0.000 description 2
- 101001083158 Homo sapiens Homeobox protein Hox-A11 Proteins 0.000 description 2
- 101000962622 Homo sapiens Homeobox protein Hox-A3 Proteins 0.000 description 2
- 101001077578 Homo sapiens Homeobox protein Hox-A4 Proteins 0.000 description 2
- 101001077568 Homo sapiens Homeobox protein Hox-A5 Proteins 0.000 description 2
- 101001045083 Homo sapiens Homeobox protein Hox-A6 Proteins 0.000 description 2
- 101001045116 Homo sapiens Homeobox protein Hox-A7 Proteins 0.000 description 2
- 101000614841 Homo sapiens Myocyte-specific enhancer factor 2A Proteins 0.000 description 2
- 101001075466 Homo sapiens Regulatory factor X-associated protein Proteins 0.000 description 2
- 101000665894 Homo sapiens Replication initiator 1 Proteins 0.000 description 2
- 101000640876 Homo sapiens Retinoic acid receptor RXR-beta Proteins 0.000 description 2
- 101000666775 Homo sapiens T-box transcription factor TBX3 Proteins 0.000 description 2
- 101001050288 Homo sapiens Transcription factor Jun Proteins 0.000 description 2
- 101000756787 Homo sapiens Transcription factor RFX3 Proteins 0.000 description 2
- 101000818569 Homo sapiens Zinc finger and BTB domain-containing protein 24 Proteins 0.000 description 2
- 101000785605 Homo sapiens Zinc finger protein 653 Proteins 0.000 description 2
- 206010020460 Human T-cell lymphotropic virus type I infection Diseases 0.000 description 2
- 241000714260 Human T-lymphotropic virus 1 Species 0.000 description 2
- VEXZGXHMUGYJMC-UHFFFAOYSA-N Hydrochloric acid Chemical compound Cl VEXZGXHMUGYJMC-UHFFFAOYSA-N 0.000 description 2
- 206010061598 Immunodeficiency Diseases 0.000 description 2
- 208000029462 Immunodeficiency disease Diseases 0.000 description 2
- ROHFNLRQFUQHCH-YFKPBYRVSA-N L-leucine Chemical compound CC(C)C[C@H](N)C(O)=O ROHFNLRQFUQHCH-YFKPBYRVSA-N 0.000 description 2
- ROHFNLRQFUQHCH-UHFFFAOYSA-N Leucine Natural products CC(C)CC(N)C(O)=O ROHFNLRQFUQHCH-UHFFFAOYSA-N 0.000 description 2
- 102000004317 Lyases Human genes 0.000 description 2
- 108090000856 Lyases Proteins 0.000 description 2
- 102100022819 MHC class II regulatory factor RFX1 Human genes 0.000 description 2
- MWCLLHOVUTZFKS-UHFFFAOYSA-N Methyl cyanoacrylate Chemical compound COC(=O)C(=C)C#N MWCLLHOVUTZFKS-UHFFFAOYSA-N 0.000 description 2
- 108060004795 Methyltransferase Proteins 0.000 description 2
- 102000016397 Methyltransferase Human genes 0.000 description 2
- 102100025751 Mothers against decapentaplegic homolog 2 Human genes 0.000 description 2
- 101710143123 Mothers against decapentaplegic homolog 2 Proteins 0.000 description 2
- 102100025748 Mothers against decapentaplegic homolog 3 Human genes 0.000 description 2
- 101710143111 Mothers against decapentaplegic homolog 3 Proteins 0.000 description 2
- 102100025725 Mothers against decapentaplegic homolog 4 Human genes 0.000 description 2
- 101710143112 Mothers against decapentaplegic homolog 4 Proteins 0.000 description 2
- 101100507933 Mus musculus Hoxc6 gene Proteins 0.000 description 2
- 101100178955 Mus musculus Hoxd4 gene Proteins 0.000 description 2
- 101100480538 Mus musculus Tal1 gene Proteins 0.000 description 2
- 102100038895 Myc proto-oncogene protein Human genes 0.000 description 2
- 101710135898 Myc proto-oncogene protein Proteins 0.000 description 2
- 102100031790 Myelin expression factor 2 Human genes 0.000 description 2
- 101710107751 Myelin expression factor 2 Proteins 0.000 description 2
- 102100021148 Myocyte-specific enhancer factor 2A Human genes 0.000 description 2
- 108010018525 NFATC Transcription Factors Proteins 0.000 description 2
- 102000002673 NFATC Transcription Factors Human genes 0.000 description 2
- 101150006407 NRF1 gene Proteins 0.000 description 2
- 101100410801 Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) pxr-1 gene Proteins 0.000 description 2
- 101150114527 Nkx2-5 gene Proteins 0.000 description 2
- 102100024006 Nuclear factor 1 A-type Human genes 0.000 description 2
- 208000008589 Obesity Diseases 0.000 description 2
- 102000007354 PAX6 Transcription Factor Human genes 0.000 description 2
- 108010032788 PAX6 Transcription Factor Proteins 0.000 description 2
- 101100312945 Pasteurella multocida (strain Pm70) talA gene Proteins 0.000 description 2
- 102100027584 Protein c-Fos Human genes 0.000 description 2
- 108010071563 Proto-Oncogene Proteins c-fos Proteins 0.000 description 2
- 102100026869 RNA-binding protein MEX3B Human genes 0.000 description 2
- 241000700159 Rattus Species 0.000 description 2
- 108010030933 Regulatory Factor X1 Proteins 0.000 description 2
- 102100021043 Regulatory factor X-associated protein Human genes 0.000 description 2
- 102100038242 Replication initiator 1 Human genes 0.000 description 2
- 102100025192 Retinoblastoma-binding protein 5 Human genes 0.000 description 2
- 101710157309 Retinoblastoma-binding protein 5 Proteins 0.000 description 2
- 102100034253 Retinoic acid receptor RXR-beta Human genes 0.000 description 2
- 102100023606 Retinoic acid receptor alpha Human genes 0.000 description 2
- 102100033909 Retinoic acid receptor beta Human genes 0.000 description 2
- 102100033912 Retinoic acid receptor gamma Human genes 0.000 description 2
- 108091028664 Ribonucleotide Proteins 0.000 description 2
- 102100032741 SET-binding protein Human genes 0.000 description 2
- 101710194492 SET-binding protein Proteins 0.000 description 2
- 101150063267 STAT5B gene Proteins 0.000 description 2
- 206010039491 Sarcoma Diseases 0.000 description 2
- 102100024474 Signal transducer and activator of transcription 5B Human genes 0.000 description 2
- 108020004459 Small interfering RNA Proteins 0.000 description 2
- 108010014480 T-box transcription factor 5 Proteins 0.000 description 2
- 102100038409 T-box transcription factor TBX3 Human genes 0.000 description 2
- 102100024755 T-box transcription factor TBX5 Human genes 0.000 description 2
- 210000001744 T-lymphocyte Anatomy 0.000 description 2
- 108010022394 Threonine synthase Proteins 0.000 description 2
- 108090000340 Transaminases Proteins 0.000 description 2
- 108010048992 Transcription Factor 4 Proteins 0.000 description 2
- 108010018242 Transcription Factor AP-1 Proteins 0.000 description 2
- 102100023489 Transcription factor 4 Human genes 0.000 description 2
- 102100022821 Transcription factor RFX3 Human genes 0.000 description 2
- 108050004072 Transcription initiation factor TFIID subunit 1 Proteins 0.000 description 2
- 101710150448 Transcriptional regulator Myc Proteins 0.000 description 2
- 102000004243 Tubulin Human genes 0.000 description 2
- 108090000704 Tubulin Proteins 0.000 description 2
- ISAKRJDGNUQOIC-UHFFFAOYSA-N Uracil Chemical compound O=C1C=CNC(=O)N1 ISAKRJDGNUQOIC-UHFFFAOYSA-N 0.000 description 2
- 241000145297 Vanni Species 0.000 description 2
- 101100460507 Xenopus laevis nkx-2.5 gene Proteins 0.000 description 2
- HCHKCACWOHOZIP-UHFFFAOYSA-N Zinc Chemical compound [Zn] HCHKCACWOHOZIP-UHFFFAOYSA-N 0.000 description 2
- QWXOJIDBSHLIFI-UHFFFAOYSA-N [3-(1-chloro-3'-methoxyspiro[adamantane-4,4'-dioxetane]-3'-yl)phenyl] dihydrogen phosphate Chemical compound O1OC2(C3CC4CC2CC(Cl)(C4)C3)C1(OC)C1=CC=CC(OP(O)(O)=O)=C1 QWXOJIDBSHLIFI-UHFFFAOYSA-N 0.000 description 2
- ZSLZBFCDCINBPY-ZSJPKINUSA-N acetyl-CoA Chemical compound O[C@@H]1[C@H](OP(O)(O)=O)[C@@H](COP(O)(=O)OP(O)(=O)OCC(C)(C)[C@@H](O)C(=O)NCCC(=O)NCCSC(=O)C)O[C@H]1N1C2=NC=NC(N)=C2N=C1 ZSLZBFCDCINBPY-ZSJPKINUSA-N 0.000 description 2
- 150000007513 acids Chemical class 0.000 description 2
- 230000003213 activating effect Effects 0.000 description 2
- OIRDTQYFTABQOQ-KQYNXXCUSA-N adenosine Chemical compound C1=NC=2C(N)=NC=NC=2N1[C@@H]1O[C@H](CO)[C@@H](O)[C@H]1O OIRDTQYFTABQOQ-KQYNXXCUSA-N 0.000 description 2
- UDMBCSSLTHHNCD-KQYNXXCUSA-N adenosine 5'-monophosphate Chemical compound C1=NC=2C(N)=NC=NC=2N1[C@@H]1O[C@H](COP(O)(O)=O)[C@@H](O)[C@H]1O UDMBCSSLTHHNCD-KQYNXXCUSA-N 0.000 description 2
- 239000011543 agarose gel Substances 0.000 description 2
- 229940043376 ammonium acetate Drugs 0.000 description 2
- 235000019257 ammonium acetate Nutrition 0.000 description 2
- 210000004102 animal cell Anatomy 0.000 description 2
- 125000000129 anionic group Chemical group 0.000 description 2
- 238000000137 annealing Methods 0.000 description 2
- 239000012131 assay buffer Substances 0.000 description 2
- 230000008901 benefit Effects 0.000 description 2
- RNBGYGVWRKECFJ-ARQDHWQXSA-N beta-D-fructofuranose 1,6-bisphosphate Chemical compound O[C@H]1[C@H](O)[C@@](O)(COP(O)(O)=O)O[C@@H]1COP(O)(O)=O RNBGYGVWRKECFJ-ARQDHWQXSA-N 0.000 description 2
- 108091008324 binding proteins Proteins 0.000 description 2
- 230000000903 blocking effect Effects 0.000 description 2
- 210000004369 blood Anatomy 0.000 description 2
- 239000008280 blood Substances 0.000 description 2
- 230000037396 body weight Effects 0.000 description 2
- 208000035269 cancer or benign tumor Diseases 0.000 description 2
- YCIMNLLNPGFGHC-UHFFFAOYSA-N catechol Chemical compound OC1=CC=CC=C1O YCIMNLLNPGFGHC-UHFFFAOYSA-N 0.000 description 2
- 230000007541 cellular toxicity Effects 0.000 description 2
- 235000012000 cholesterol Nutrition 0.000 description 2
- WLNARFZDISHUGS-MIXBDBMTSA-N cholesteryl hemisuccinate Chemical compound C1C=C2C[C@@H](OC(=O)CCC(O)=O)CC[C@]2(C)[C@@H]2[C@@H]1[C@@H]1CC[C@H]([C@H](C)CCCC(C)C)[C@@]1(C)CC2 WLNARFZDISHUGS-MIXBDBMTSA-N 0.000 description 2
- 238000003776 cleavage reaction Methods 0.000 description 2
- 238000009833 condensation Methods 0.000 description 2
- 230000005494 condensation Effects 0.000 description 2
- 238000012790 confirmation Methods 0.000 description 2
- 238000004132 cross linking Methods 0.000 description 2
- OPTASPLRGRRNAP-UHFFFAOYSA-N cytosine Chemical compound NC=1C=CNC(=O)N=1 OPTASPLRGRRNAP-UHFFFAOYSA-N 0.000 description 2
- 238000000354 decomposition reaction Methods 0.000 description 2
- 238000012217 deletion Methods 0.000 description 2
- 230000037430 deletion Effects 0.000 description 2
- 238000013461 design Methods 0.000 description 2
- 238000011161 development Methods 0.000 description 2
- 230000018109 developmental process Effects 0.000 description 2
- XPPKVPWEQAFLFU-UHFFFAOYSA-N diphosphoric acid Chemical compound OP(O)(=O)OP(O)(O)=O XPPKVPWEQAFLFU-UHFFFAOYSA-N 0.000 description 2
- VYFYYTLLBUKUHU-UHFFFAOYSA-N dopamine Chemical compound NCCC1=CC=C(O)C(O)=C1 VYFYYTLLBUKUHU-UHFFFAOYSA-N 0.000 description 2
- 210000000981 epithelium Anatomy 0.000 description 2
- 230000028023 exocytosis Effects 0.000 description 2
- 101150051296 foxj2 gene Proteins 0.000 description 2
- 238000001502 gel electrophoresis Methods 0.000 description 2
- ZDXPYRJPNDTMRX-UHFFFAOYSA-N glutamine Natural products OC(=O)C(N)CCC(N)=O ZDXPYRJPNDTMRX-UHFFFAOYSA-N 0.000 description 2
- 210000002288 golgi apparatus Anatomy 0.000 description 2
- 238000013537 high throughput screening Methods 0.000 description 2
- 125000000487 histidyl group Chemical group [H]N([H])C(C(=O)O*)C([H])([H])C1=C([H])N([H])C([H])=N1 0.000 description 2
- 101150003074 hoxa5 gene Proteins 0.000 description 2
- 102000043323 human PSIP1 Human genes 0.000 description 2
- 230000002209 hydrophobic effect Effects 0.000 description 2
- 230000007813 immunodeficiency Effects 0.000 description 2
- 230000008676 import Effects 0.000 description 2
- 238000010348 incorporation Methods 0.000 description 2
- 238000003780 insertion Methods 0.000 description 2
- 230000037431 insertion Effects 0.000 description 2
- 239000007788 liquid Substances 0.000 description 2
- 108090000865 liver X receptors Proteins 0.000 description 2
- 102000004311 liver X receptors Human genes 0.000 description 2
- 210000002540 macrophage Anatomy 0.000 description 2
- 230000003211 malignant effect Effects 0.000 description 2
- 210000004962 mammalian cell Anatomy 0.000 description 2
- 239000003550 marker Substances 0.000 description 2
- 239000000463 material Substances 0.000 description 2
- 238000005259 measurement Methods 0.000 description 2
- 210000003632 microfilament Anatomy 0.000 description 2
- 239000013642 negative control Substances 0.000 description 2
- 210000005170 neoplastic cell Anatomy 0.000 description 2
- 229910052759 nickel Inorganic materials 0.000 description 2
- 238000013421 nuclear magnetic resonance imaging Methods 0.000 description 2
- 235000020824 obesity Nutrition 0.000 description 2
- PXQPEWDEAKTCGB-UHFFFAOYSA-N orotic acid Chemical compound OC(=O)C1=CC(=O)NC(=O)N1 PXQPEWDEAKTCGB-UHFFFAOYSA-N 0.000 description 2
- 230000003204 osmotic effect Effects 0.000 description 2
- 208000008443 pancreatic carcinoma Diseases 0.000 description 2
- 230000008506 pathogenesis Effects 0.000 description 2
- 239000002953 phosphate buffered saline Substances 0.000 description 2
- 230000007505 plaque formation Effects 0.000 description 2
- 229920005643 polyisobutyl cyanoacrylate Polymers 0.000 description 2
- 229920000642 polymer Polymers 0.000 description 2
- 229920000136 polysorbate Polymers 0.000 description 2
- 238000010837 poor prognosis Methods 0.000 description 2
- 239000013641 positive control Substances 0.000 description 2
- 238000002360 preparation method Methods 0.000 description 2
- 238000004393 prognosis Methods 0.000 description 2
- 125000001436 propyl group Chemical group [H]C([*])([H])C([H])([H])C([H])([H])[H] 0.000 description 2
- 230000005588 protonation Effects 0.000 description 2
- 238000011002 quantification Methods 0.000 description 2
- 108700042226 ras Genes Proteins 0.000 description 2
- 230000001105 regulatory effect Effects 0.000 description 2
- 238000011160 research Methods 0.000 description 2
- 102000003702 retinoic acid receptors Human genes 0.000 description 2
- 108090000064 retinoic acid receptors Proteins 0.000 description 2
- 108091008726 retinoic acid receptors α Proteins 0.000 description 2
- 108091008761 retinoic acid receptors β Proteins 0.000 description 2
- 108091008760 retinoic acid receptors γ Proteins 0.000 description 2
- 239000002336 ribonucleotide Substances 0.000 description 2
- 125000002652 ribonucleotide group Chemical group 0.000 description 2
- 108091092562 ribozyme Proteins 0.000 description 2
- 230000007017 scission Effects 0.000 description 2
- 210000002966 serum Anatomy 0.000 description 2
- 239000002904 solvent Substances 0.000 description 2
- 230000009870 specific binding Effects 0.000 description 2
- 230000006641 stabilisation Effects 0.000 description 2
- 230000003019 stabilising effect Effects 0.000 description 2
- 239000007858 starting material Substances 0.000 description 2
- 239000007929 subcutaneous injection Substances 0.000 description 2
- 230000008961 swelling Effects 0.000 description 2
- 108010067247 tacrolimus binding protein 4 Proteins 0.000 description 2
- 231100000331 toxic Toxicity 0.000 description 2
- 230000002588 toxic effect Effects 0.000 description 2
- 102000014898 transaminase activity proteins Human genes 0.000 description 2
- 108091006108 transcriptional coactivators Proteins 0.000 description 2
- 230000007723 transport mechanism Effects 0.000 description 2
- 241001529453 unidentified herpesvirus Species 0.000 description 2
- 210000004509 vascular smooth muscle cell Anatomy 0.000 description 2
- 230000003612 virological effect Effects 0.000 description 2
- XLYOFNOQVPJJNP-UHFFFAOYSA-N water Substances O XLYOFNOQVPJJNP-UHFFFAOYSA-N 0.000 description 2
- 239000011701 zinc Substances 0.000 description 2
- 229910052725 zinc Inorganic materials 0.000 description 2
- AHZQQIBUZKHEHR-FVGYRXGTSA-N (2s)-2-amino-3-(1h-indol-3-yl)propanoic acid;phosphoric acid Chemical compound OP(O)(O)=O.C1=CC=C2C(C[C@H](N)C(O)=O)=CNC2=C1 AHZQQIBUZKHEHR-FVGYRXGTSA-N 0.000 description 1
- TYBFYWFTPNZNIS-DKWTVANSSA-N (2s)-2-aminobutanedioic acid;phosphoric acid Chemical compound OP(O)(O)=O.OC(=O)[C@@H](N)CC(O)=O TYBFYWFTPNZNIS-DKWTVANSSA-N 0.000 description 1
- VQPIHIGAMRSAAN-WMUFLLRFSA-N (3S)-3-[[(2S)-6-amino-2-[[2-[[(2S)-2-[[(2S)-6-amino-2-[[2-[[(2S)-2-[[(2S)-2-[[(2S)-2-[[2-[[(2S)-5-amino-2-[[(2S)-2-[[(2S)-6-amino-2-[[(2S)-2-[[(2S)-2-[[(2S)-2-amino-5-carbamimidamidopentanoyl]amino]-4-methylpentanoyl]amino]-3-(4-hydroxyphenyl)propanoyl]amino]hexanoyl]amino]-3-phenylpropanoyl]amino]-5-oxopentanoyl]amino]acetyl]amino]propanoyl]amino]-4-methylpentanoyl]amino]-4-methylpentanoyl]amino]acetyl]amino]hexanoyl]amino]-3-phenylpropanoyl]amino]acetyl]amino]hexanoyl]amino]-4-[[(2S)-1-[[(2S)-4-amino-1-[[(2S)-1-[[(2S)-1-[[(2S)-6-amino-1-[[(2S)-6-amino-1-[[(2S)-1-[[(2S)-1-[[(2S)-1-[[(2S)-1-[[(2S)-1-[[(2S)-1-[[(2S)-1-[[2-[[(2S)-1-[[(2S)-1-[[(2S)-1-[[(2S)-1-[[2-[[2-[[(2S)-1-[[(2S)-1-[[(2S,3R)-1-[[(2S)-5-amino-1-[[(2S)-1-[[(2S,3R)-1-[[(1S)-1-carboxy-2-phenylethyl]amino]-3-hydroxy-1-oxobutan-2-yl]amino]-3-methyl-1-oxobutan-2-yl]amino]-1,5-dioxopentan-2-yl]amino]-3-hydroxy-1-oxobutan-2-yl]amino]-3-hydroxy-1-oxopropan-2-yl]amino]-1-oxopropan-2-yl]amino]-2-oxoethyl]amino]-2-oxoethyl]amino]-4-methyl-1-oxopentan-2-yl]amino]-3-carboxy-1-oxopropan-2-yl]amino]-4-methyl-1-oxopentan-2-yl]amino]-1-oxopropan-2-yl]amino]-2-oxoethyl]amino]-3-(4-hydroxyphenyl)-1-oxopropan-2-yl]amino]-4-methyl-1-oxopentan-2-yl]amino]-3-carboxy-1-oxopropan-2-yl]amino]-3-hydroxy-1-oxopropan-2-yl]amino]-3-methyl-1-oxobutan-2-yl]amino]-3-methyl-1-oxobutan-2-yl]amino]-3-methyl-1-oxobutan-2-yl]amino]-1-oxohexan-2-yl]amino]-1-oxohexan-2-yl]amino]-3-(4-hydroxyphenyl)-1-oxopropan-2-yl]amino]-3-methyl-1-oxobutan-2-yl]amino]-1,4-dioxobutan-2-yl]amino]-3-(4-hydroxyphenyl)-1-oxopropan-2-yl]amino]-4-oxobutanoic acid Chemical compound CC(C)C[C@H](NC(=O)[C@H](CC(C)C)NC(=O)[C@H](C)NC(=O)CNC(=O)[C@H](CCC(N)=O)NC(=O)[C@H](Cc1ccccc1)NC(=O)[C@H](CCCCN)NC(=O)[C@H](Cc1ccc(O)cc1)NC(=O)[C@H](CC(C)C)NC(=O)[C@@H](N)CCCNC(N)=N)C(=O)NCC(=O)N[C@@H](CCCCN)C(=O)N[C@@H](Cc1ccccc1)C(=O)NCC(=O)N[C@@H](CCCCN)C(=O)N[C@@H](CC(O)=O)C(=O)N[C@@H](Cc1ccc(O)cc1)C(=O)N[C@@H](CC(N)=O)C(=O)N[C@@H](C(C)C)C(=O)N[C@@H](Cc1ccc(O)cc1)C(=O)N[C@@H](CCCCN)C(=O)N[C@@H](CCCCN)C(=O)N[C@@H](C(C)C)C(=O)N[C@@H](C(C)C)C(=O)N[C@@H](C(C)C)C(=O)N[C@@H](CO)C(=O)N[C@@H](CC(O)=O)C(=O)N[C@@H](CC(C)C)C(=O)N[C@@H](Cc1ccc(O)cc1)C(=O)NCC(=O)N[C@@H](C)C(=O)N[C@@H](CC(C)C)C(=O)N[C@@H](CC(O)=O)C(=O)N[C@@H](CC(C)C)C(=O)NCC(=O)NCC(=O)N[C@@H](C)C(=O)N[C@@H](CO)C(=O)N[C@@H]([C@@H](C)O)C(=O)N[C@@H](CCC(N)=O)C(=O)N[C@@H](C(C)C)C(=O)N[C@@H]([C@@H](C)O)C(=O)N[C@@H](Cc1ccccc1)C(O)=O VQPIHIGAMRSAAN-WMUFLLRFSA-N 0.000 description 1
- ZKSVYBRJSMBDMV-UHFFFAOYSA-N 1,3-diphenyl-2-benzofuran Chemical compound C1=CC=CC=C1C1=C2C=CC=CC2=C(C=2C=CC=CC=2)O1 ZKSVYBRJSMBDMV-UHFFFAOYSA-N 0.000 description 1
- GZCWLCBFPRFLKL-UHFFFAOYSA-N 1-prop-2-ynoxypropan-2-ol Chemical compound CC(O)COCC#C GZCWLCBFPRFLKL-UHFFFAOYSA-N 0.000 description 1
- KVUXYQHEESDGIJ-UHFFFAOYSA-N 10,13-dimethyl-2,3,4,5,6,7,8,9,11,12,14,15,16,17-tetradecahydro-1h-cyclopenta[a]phenanthrene-3,16-diol Chemical compound C1CC2CC(O)CCC2(C)C2C1C1CC(O)CC1(C)CC2 KVUXYQHEESDGIJ-UHFFFAOYSA-N 0.000 description 1
- FUFLCEKSBBHCMO-UHFFFAOYSA-N 11-dehydrocorticosterone Natural products O=C1CCC2(C)C3C(=O)CC(C)(C(CC4)C(=O)CO)C4C3CCC2=C1 FUFLCEKSBBHCMO-UHFFFAOYSA-N 0.000 description 1
- 108700020469 14-3-3 Proteins 0.000 description 1
- PXFBZOLANLWPMH-UHFFFAOYSA-N 16-Epiaffinine Natural products C1C(C2=CC=CC=C2N2)=C2C(=O)CC2C(=CC)CN(C)C1C2CO PXFBZOLANLWPMH-UHFFFAOYSA-N 0.000 description 1
- KSXTUUUQYQYKCR-LQDDAWAPSA-M 2,3-bis[[(z)-octadec-9-enoyl]oxy]propyl-trimethylazanium;chloride Chemical compound [Cl-].CCCCCCCC\C=C/CCCCCCCC(=O)OCC(C[N+](C)(C)C)OC(=O)CCCCCCC\C=C/CCCCCCCC KSXTUUUQYQYKCR-LQDDAWAPSA-M 0.000 description 1
- AKWUNZFZIXEOPV-UHFFFAOYSA-N 2-[4-[[3-[7-chloro-1-(oxan-4-ylmethyl)indol-3-yl]-1,2,4-oxadiazol-5-yl]methyl]piperazin-1-yl]acetamide Chemical compound C1CN(CC(=O)N)CCN1CC1=NC(C=2C3=CC=CC(Cl)=C3N(CC3CCOCC3)C=2)=NO1 AKWUNZFZIXEOPV-UHFFFAOYSA-N 0.000 description 1
- BFFPVEVGHKMWLT-UHFFFAOYSA-N 2-amino-3,7-dihydropurin-6-one;3,7-dihydropurin-6-one Chemical compound O=C1NC=NC2=C1NC=N2.O=C1NC(N)=NC2=C1NC=N2 BFFPVEVGHKMWLT-UHFFFAOYSA-N 0.000 description 1
- 108020005345 3' Untranslated Regions Proteins 0.000 description 1
- 101150110188 30 gene Proteins 0.000 description 1
- 102100033747 39S ribosomal protein L15, mitochondrial Human genes 0.000 description 1
- FWBHETKCLVMNFS-UHFFFAOYSA-N 4',6-Diamino-2-phenylindol Chemical compound C1=CC(C(=N)N)=CC=C1C1=CC2=CC=C(C(N)=N)C=C2N1 FWBHETKCLVMNFS-UHFFFAOYSA-N 0.000 description 1
- 108010060511 4-Aminobutyrate Transaminase Proteins 0.000 description 1
- 102100035923 4-aminobutyrate aminotransferase, mitochondrial Human genes 0.000 description 1
- 101710169336 5'-deoxyadenosine deaminase Proteins 0.000 description 1
- HCAJQHYUCKICQH-VPENINKCSA-N 8-Oxo-7,8-dihydro-2'-deoxyguanosine Chemical compound C1=2NC(N)=NC(=O)C=2NC(=O)N1[C@H]1C[C@H](O)[C@@H](CO)O1 HCAJQHYUCKICQH-VPENINKCSA-N 0.000 description 1
- 102000006267 AMP Deaminase Human genes 0.000 description 1
- 108700016228 AMP deaminases Proteins 0.000 description 1
- 108010088547 ARNTL Transcription Factors Proteins 0.000 description 1
- 102100030835 AT-rich interactive domain-containing protein 5B Human genes 0.000 description 1
- 101710081716 AT-rich interactive domain-containing protein 5B Proteins 0.000 description 1
- 208000006678 Abdominal Neoplasms Diseases 0.000 description 1
- QTBSBXVTEAMEQO-UHFFFAOYSA-M Acetate Chemical compound CC([O-])=O QTBSBXVTEAMEQO-UHFFFAOYSA-M 0.000 description 1
- 108010000700 Acetolactate synthase Proteins 0.000 description 1
- 108010003902 Acetyl-CoA C-acyltransferase Proteins 0.000 description 1
- 102000004672 Acetyl-CoA C-acyltransferase Human genes 0.000 description 1
- 102000000452 Acetyl-CoA carboxylase Human genes 0.000 description 1
- 108010016219 Acetyl-CoA carboxylase Proteins 0.000 description 1
- 108010051457 Acid Phosphatase Proteins 0.000 description 1
- 102000013563 Acid Phosphatase Human genes 0.000 description 1
- 108010009924 Aconitate hydratase Proteins 0.000 description 1
- 102000007469 Actins Human genes 0.000 description 1
- 108010085238 Actins Proteins 0.000 description 1
- 102000006488 Acyl-Carrier Protein S-Malonyltransferase Human genes 0.000 description 1
- 108010058912 Acyl-Carrier Protein S-Malonyltransferase Proteins 0.000 description 1
- 102100036664 Adenosine deaminase Human genes 0.000 description 1
- 102100032534 Adenosine kinase Human genes 0.000 description 1
- 108020000543 Adenylate kinase Proteins 0.000 description 1
- NRCXNPKDOMYPPJ-HYORBCNSSA-N Aflatoxin P1 Chemical compound C=1([C@@H]2C=CO[C@@H]2OC=1C=C(C1=2)O)C=2OC(=O)C2=C1CCC2=O NRCXNPKDOMYPPJ-HYORBCNSSA-N 0.000 description 1
- 102100036475 Alanine aminotransferase 1 Human genes 0.000 description 1
- 108010082126 Alanine transaminase Proteins 0.000 description 1
- 108010021809 Alcohol dehydrogenase Proteins 0.000 description 1
- 102000007698 Alcohol dehydrogenase Human genes 0.000 description 1
- 102000016912 Aldehyde Reductase Human genes 0.000 description 1
- 108010053754 Aldehyde reductase Proteins 0.000 description 1
- 244000068687 Amelanchier alnifolia Species 0.000 description 1
- 235000009027 Amelanchier alnifolia Nutrition 0.000 description 1
- 102100039160 Amiloride-sensitive amine oxidase [copper-containing] Human genes 0.000 description 1
- 108010028700 Amine Oxidase (Copper-Containing) Proteins 0.000 description 1
- 102000052866 Amino Acyl-tRNA Synthetases Human genes 0.000 description 1
- 108700028939 Amino Acyl-tRNA Synthetases Proteins 0.000 description 1
- 101710191958 Amino-acid acetyltransferase Proteins 0.000 description 1
- 101710137189 Amyloid-beta A4 protein Proteins 0.000 description 1
- 102100022704 Amyloid-beta precursor protein Human genes 0.000 description 1
- 101710151993 Amyloid-beta precursor protein Proteins 0.000 description 1
- 102000000412 Annexin Human genes 0.000 description 1
- 108050008874 Annexin Proteins 0.000 description 1
- 108020000948 Antisense Oligonucleotides Proteins 0.000 description 1
- 101000745634 Aplysia californica Cytoplasmic polyadenylation element-binding protein Proteins 0.000 description 1
- 102100021987 Apoptosis-stimulating of p53 protein 1 Human genes 0.000 description 1
- 102100021986 Apoptosis-stimulating of p53 protein 2 Human genes 0.000 description 1
- 102000007347 Apyrase Human genes 0.000 description 1
- 108010007730 Apyrase Proteins 0.000 description 1
- 101100004644 Arabidopsis thaliana BAT1 gene Proteins 0.000 description 1
- 101100179391 Arabidopsis thaliana EIF4G gene Proteins 0.000 description 1
- 101100295091 Arabidopsis thaliana NUDT14 gene Proteins 0.000 description 1
- 101000797612 Arabidopsis thaliana Protein MEI2-like 3 Proteins 0.000 description 1
- 102000004452 Arginase Human genes 0.000 description 1
- 108700024123 Arginases Proteins 0.000 description 1
- 102000009042 Argininosuccinate Lyase Human genes 0.000 description 1
- 102000014654 Aromatase Human genes 0.000 description 1
- 108010078554 Aromatase Proteins 0.000 description 1
- 102100027839 Aryl hydrocarbon receptor nuclear translocator 2 Human genes 0.000 description 1
- 102100021661 Aryl hydrocarbon receptor nuclear translocator-like protein 2 Human genes 0.000 description 1
- 101150010353 Ascl1 gene Proteins 0.000 description 1
- 208000037260 Atherosclerotic Plaque Diseases 0.000 description 1
- 102100021631 B-cell lymphoma 6 protein Human genes 0.000 description 1
- 102000036365 BRCA1 Human genes 0.000 description 1
- 108700020463 BRCA1 Proteins 0.000 description 1
- 101150072950 BRCA1 gene Proteins 0.000 description 1
- 102000052609 BRCA2 Human genes 0.000 description 1
- 108700020462 BRCA2 Proteins 0.000 description 1
- 102100035687 Bile salt-activated lipase Human genes 0.000 description 1
- 101150040844 Bin1 gene Proteins 0.000 description 1
- 108010018763 Biotin carboxylase Proteins 0.000 description 1
- 101000654587 Bombyx mori Silk gland factor 3 Proteins 0.000 description 1
- 101150008921 Brca2 gene Proteins 0.000 description 1
- 102100021411 C-terminal-binding protein 2 Human genes 0.000 description 1
- 101710178053 C-terminal-binding protein 2 Proteins 0.000 description 1
- 239000002126 C01EB10 - Adenosine Substances 0.000 description 1
- 102000019063 CCAAT-Binding Factor Human genes 0.000 description 1
- 108010026988 CCAAT-Binding Factor Proteins 0.000 description 1
- 108010014064 CCCTC-Binding Factor Proteins 0.000 description 1
- 102100033849 CCHC-type zinc finger nucleic acid binding protein Human genes 0.000 description 1
- 101710116319 CCHC-type zinc finger nucleic acid binding protein Proteins 0.000 description 1
- 101150017002 CD44 gene Proteins 0.000 description 1
- 101150035324 CDK9 gene Proteins 0.000 description 1
- 108010083123 CDX2 Transcription Factor Proteins 0.000 description 1
- 102100028226 COUP transcription factor 2 Human genes 0.000 description 1
- 102100024156 Cadherin-12 Human genes 0.000 description 1
- 101710196882 Cadherin-12 Proteins 0.000 description 1
- 101100064697 Caenorhabditis elegans efk-1 gene Proteins 0.000 description 1
- 101100450705 Caenorhabditis elegans hif-1 gene Proteins 0.000 description 1
- 101100280477 Caenorhabditis elegans lbp-1 gene Proteins 0.000 description 1
- 101100129500 Caenorhabditis elegans max-2 gene Proteins 0.000 description 1
- 101100518995 Caenorhabditis elegans pax-3 gene Proteins 0.000 description 1
- 101100262441 Caenorhabditis elegans rfl-1 gene Proteins 0.000 description 1
- 101100257372 Caenorhabditis elegans sox-3 gene Proteins 0.000 description 1
- 102000055006 Calcitonin Human genes 0.000 description 1
- 108060001064 Calcitonin Proteins 0.000 description 1
- OYPRJOBELJOOCE-UHFFFAOYSA-N Calcium Chemical compound [Ca] OYPRJOBELJOOCE-UHFFFAOYSA-N 0.000 description 1
- 102000000584 Calmodulin Human genes 0.000 description 1
- 108010041952 Calmodulin Proteins 0.000 description 1
- 102000007590 Calpain Human genes 0.000 description 1
- 108010032088 Calpain Proteins 0.000 description 1
- 102100029968 Calreticulin Human genes 0.000 description 1
- 108090000549 Calreticulin Proteins 0.000 description 1
- 102100027313 Calsenilin Human genes 0.000 description 1
- 101100422204 Candida albicans (strain SC5314 / ATCC MYA-2876) CDC68 gene Proteins 0.000 description 1
- 101100341660 Canis lupus familiaris KRT1 gene Proteins 0.000 description 1
- 102100037403 Carbohydrate-responsive element-binding protein Human genes 0.000 description 1
- BVKZGUZCCUSVTD-UHFFFAOYSA-L Carbonate Chemical compound [O-]C([O-])=O BVKZGUZCCUSVTD-UHFFFAOYSA-L 0.000 description 1
- 102000007132 Carboxyl and Carbamoyl Transferases Human genes 0.000 description 1
- 108010072957 Carboxyl and Carbamoyl Transferases Proteins 0.000 description 1
- 102000014914 Carrier Proteins Human genes 0.000 description 1
- 102000008122 Casein Kinase I Human genes 0.000 description 1
- 108010049812 Casein Kinase I Proteins 0.000 description 1
- 102000052052 Casein Kinase II Human genes 0.000 description 1
- 108010010919 Casein Kinase II Proteins 0.000 description 1
- 102100035882 Catalase Human genes 0.000 description 1
- 108010053835 Catalase Proteins 0.000 description 1
- 102000004225 Cathepsin B Human genes 0.000 description 1
- 108090000712 Cathepsin B Proteins 0.000 description 1
- 102000004172 Cathepsin L Human genes 0.000 description 1
- 108090000624 Cathepsin L Proteins 0.000 description 1
- 102000005600 Cathepsins Human genes 0.000 description 1
- 108010084457 Cathepsins Proteins 0.000 description 1
- 101000850997 Cavia porcellus Eosinophil granule major basic protein 2 Proteins 0.000 description 1
- ZEOWTGPWHLSLOG-UHFFFAOYSA-N Cc1ccc(cc1-c1ccc2c(n[nH]c2c1)-c1cnn(c1)C1CC1)C(=O)Nc1cccc(c1)C(F)(F)F Chemical compound Cc1ccc(cc1-c1ccc2c(n[nH]c2c1)-c1cnn(c1)C1CC1)C(=O)Nc1cccc(c1)C(F)(F)F ZEOWTGPWHLSLOG-UHFFFAOYSA-N 0.000 description 1
- 101150096994 Cdx1 gene Proteins 0.000 description 1
- 108091006146 Channels Proteins 0.000 description 1
- 102100040428 Chitobiosyldiphosphodolichol beta-mannosyltransferase Human genes 0.000 description 1
- 108010077544 Chromatin Proteins 0.000 description 1
- 102100039095 Chromatin-remodeling ATPase INO80 Human genes 0.000 description 1
- 102100032920 Chromobox protein homolog 2 Human genes 0.000 description 1
- 101150065749 Churc1 gene Proteins 0.000 description 1
- 102100033361 Cilium assembly protein DZIP1 Human genes 0.000 description 1
- 102100026191 Class E basic helix-loop-helix protein 40 Human genes 0.000 description 1
- 101710130550 Class E basic helix-loop-helix protein 40 Proteins 0.000 description 1
- 102100026190 Class E basic helix-loop-helix protein 41 Human genes 0.000 description 1
- 102000005853 Clathrin Human genes 0.000 description 1
- 108010019874 Clathrin Proteins 0.000 description 1
- 101710094648 Coat protein Proteins 0.000 description 1
- 102100023709 Coiled-coil domain-containing protein 71 Human genes 0.000 description 1
- 102000008186 Collagen Human genes 0.000 description 1
- 108010035532 Collagen Proteins 0.000 description 1
- 102000029816 Collagenase Human genes 0.000 description 1
- 108060005980 Collagenase Proteins 0.000 description 1
- 206010009944 Colon cancer Diseases 0.000 description 1
- 208000001333 Colorectal Neoplasms Diseases 0.000 description 1
- 108010079362 Core Binding Factor Alpha 3 Subunit Proteins 0.000 description 1
- MFYSYFVPBJMHGN-ZPOLXVRWSA-N Cortisone Chemical compound O=C1CC[C@]2(C)[C@H]3C(=O)C[C@](C)([C@@](CC4)(O)C(=O)CO)[C@@H]4[C@@H]3CCC2=C1 MFYSYFVPBJMHGN-ZPOLXVRWSA-N 0.000 description 1
- MFYSYFVPBJMHGN-UHFFFAOYSA-N Cortisone Natural products O=C1CCC2(C)C3C(=O)CC(C)(C(CC4)(O)C(=O)CO)C4C3CCC2=C1 MFYSYFVPBJMHGN-UHFFFAOYSA-N 0.000 description 1
- 101001120236 Crotalus durissus cumanensis Basic phospholipase A2 10 Proteins 0.000 description 1
- 101710095468 Cyclase Proteins 0.000 description 1
- 102100023580 Cyclic AMP-dependent transcription factor ATF-4 Human genes 0.000 description 1
- 102100023582 Cyclic AMP-dependent transcription factor ATF-5 Human genes 0.000 description 1
- 102100023583 Cyclic AMP-dependent transcription factor ATF-6 alpha Human genes 0.000 description 1
- 102000016736 Cyclin Human genes 0.000 description 1
- 108050006400 Cyclin Proteins 0.000 description 1
- 108010068192 Cyclin A Proteins 0.000 description 1
- 108010068106 Cyclin T Proteins 0.000 description 1
- 102100025191 Cyclin-A2 Human genes 0.000 description 1
- 102100024112 Cyclin-T2 Human genes 0.000 description 1
- 102000001493 Cyclophilins Human genes 0.000 description 1
- 108010068682 Cyclophilins Proteins 0.000 description 1
- 102100026846 Cytidine deaminase Human genes 0.000 description 1
- 108010031325 Cytidine deaminase Proteins 0.000 description 1
- 108010015742 Cytochrome P-450 Enzyme System Proteins 0.000 description 1
- 102000003849 Cytochrome P450 Human genes 0.000 description 1
- 108060006006 Cytochrome-c peroxidase Proteins 0.000 description 1
- 102000004127 Cytokines Human genes 0.000 description 1
- 108090000695 Cytokines Proteins 0.000 description 1
- 102100039868 Cytoplasmic aconitate hydratase Human genes 0.000 description 1
- 150000008574 D-amino acids Chemical class 0.000 description 1
- LXJXRIRHZLFYRP-VKHMYHEASA-N D-glyceraldehyde 3-phosphate Chemical compound O=C[C@H](O)COP(O)(O)=O LXJXRIRHZLFYRP-VKHMYHEASA-N 0.000 description 1
- HMFHBZSHGGEWLO-SOOFDHNKSA-N D-ribofuranose Chemical compound OC[C@H]1OC(O)[C@H](O)[C@@H]1O HMFHBZSHGGEWLO-SOOFDHNKSA-N 0.000 description 1
- 230000005778 DNA damage Effects 0.000 description 1
- 231100000277 DNA damage Toxicity 0.000 description 1
- 102100029145 DNA damage-inducible transcript 3 protein Human genes 0.000 description 1
- 101710156077 DNA damage-inducible transcript 3 protein Proteins 0.000 description 1
- 101100281017 Danio rerio fgf3 gene Proteins 0.000 description 1
- 102100028559 Death domain-associated protein 6 Human genes 0.000 description 1
- 101710085792 Defensin-like protein 1 Proteins 0.000 description 1
- 102000000541 Defensins Human genes 0.000 description 1
- 108010002069 Defensins Proteins 0.000 description 1
- 108010053770 Deoxyribonucleases Proteins 0.000 description 1
- 102000016911 Deoxyribonucleases Human genes 0.000 description 1
- 101000651310 Desulfitobacterium hafniense (strain Y51) Trigger factor 2 Proteins 0.000 description 1
- 102000016680 Dioxygenases Human genes 0.000 description 1
- 108010028143 Dioxygenases Proteins 0.000 description 1
- 101100054052 Drosophila melanogaster 14-3-3epsilon gene Proteins 0.000 description 1
- 101100422210 Drosophila melanogaster dre4 gene Proteins 0.000 description 1
- 101100457919 Drosophila melanogaster stg gene Proteins 0.000 description 1
- 206010013883 Dwarfism Diseases 0.000 description 1
- 102100038913 E1A-binding protein p400 Human genes 0.000 description 1
- 102100034597 E3 ubiquitin-protein ligase TRIM22 Human genes 0.000 description 1
- 101150059401 EGR2 gene Proteins 0.000 description 1
- 101150000195 EGR3 gene Proteins 0.000 description 1
- 238000002965 ELISA Methods 0.000 description 1
- 101150033269 ESRRG gene Proteins 0.000 description 1
- 102100023792 ETS domain-containing protein Elk-4 Human genes 0.000 description 1
- 101710130332 ETS domain-containing protein Elk-4 Proteins 0.000 description 1
- 102100039578 ETS translocation variant 4 Human genes 0.000 description 1
- 102100039247 ETS-related transcription factor Elf-4 Human genes 0.000 description 1
- 102100037114 Elongin-C Human genes 0.000 description 1
- 108050009447 Elongin-C Proteins 0.000 description 1
- 208000005189 Embolism Diseases 0.000 description 1
- 241000196324 Embryophyta Species 0.000 description 1
- 101710157062 Endoplasmic reticulum membrane sensor NFE2L1 Proteins 0.000 description 1
- 101710198510 Enoyl-[acyl-carrier-protein] reductase [NADH] Proteins 0.000 description 1
- 102100030751 Eomesodermin homolog Human genes 0.000 description 1
- 108010008655 Epstein-Barr Virus Nuclear Antigens Proteins 0.000 description 1
- 101710100588 Erythroid transcription factor Proteins 0.000 description 1
- 108090000371 Esterases Proteins 0.000 description 1
- 102100038595 Estrogen receptor Human genes 0.000 description 1
- 101710196141 Estrogen receptor Proteins 0.000 description 1
- 102100031855 Estrogen-related receptor gamma Human genes 0.000 description 1
- OTMSDBZUPAUEDD-UHFFFAOYSA-N Ethane Chemical compound CC OTMSDBZUPAUEDD-UHFFFAOYSA-N 0.000 description 1
- 102100028166 FACT complex subunit SSRP1 Human genes 0.000 description 1
- 101150043847 FOXD1 gene Proteins 0.000 description 1
- 102000008857 Ferritin Human genes 0.000 description 1
- 108050000784 Ferritin Proteins 0.000 description 1
- 238000008416 Ferritin Methods 0.000 description 1
- 208000007659 Fibroadenoma Diseases 0.000 description 1
- 102000018233 Fibroblast Growth Factor Human genes 0.000 description 1
- 108050007372 Fibroblast Growth Factor Proteins 0.000 description 1
- 102100023593 Fibroblast growth factor receptor 1 Human genes 0.000 description 1
- 101710182386 Fibroblast growth factor receptor 1 Proteins 0.000 description 1
- 102100023600 Fibroblast growth factor receptor 2 Human genes 0.000 description 1
- 101710182389 Fibroblast growth factor receptor 2 Proteins 0.000 description 1
- 108010010285 Forkhead Box Protein L2 Proteins 0.000 description 1
- 102100021083 Forkhead box protein C2 Human genes 0.000 description 1
- 102100037057 Forkhead box protein D1 Human genes 0.000 description 1
- 102100037062 Forkhead box protein D2 Human genes 0.000 description 1
- 102100037060 Forkhead box protein D3 Human genes 0.000 description 1
- 102100020855 Forkhead box protein E3 Human genes 0.000 description 1
- 102100020848 Forkhead box protein F2 Human genes 0.000 description 1
- 102100041006 Forkhead box protein J1 Human genes 0.000 description 1
- 102100035128 Forkhead box protein J3 Human genes 0.000 description 1
- 102100035137 Forkhead box protein L2 Human genes 0.000 description 1
- 102100023371 Forkhead box protein N1 Human genes 0.000 description 1
- 102100023360 Forkhead box protein N2 Human genes 0.000 description 1
- 102100023359 Forkhead box protein N3 Human genes 0.000 description 1
- 102100028115 Forkhead box protein P2 Human genes 0.000 description 1
- 102100027581 Forkhead box protein P3 Human genes 0.000 description 1
- 102100027570 Forkhead box protein Q1 Human genes 0.000 description 1
- 101710088110 Forkhead box protein Q1 Proteins 0.000 description 1
- 102100039818 Frizzled-5 Human genes 0.000 description 1
- 101710140951 Frizzled-5 Proteins 0.000 description 1
- 108010036781 Fumarate Hydratase Proteins 0.000 description 1
- 102100036160 Fumarate hydratase, mitochondrial Human genes 0.000 description 1
- 230000010190 G1 phase Effects 0.000 description 1
- 102100035205 GA-binding protein subunit beta-1 Human genes 0.000 description 1
- HILUWRPVFKJTAD-ZGHMGGRHSA-N GA21 Chemical compound O=C(O)[C@H]1[C@@H]2[C@]3(C(=O)O)C(=O)O[C@@]2([C@H]2[C@]41CC(=C)[C@@](O)(C4)CC2)CCC3 HILUWRPVFKJTAD-ZGHMGGRHSA-N 0.000 description 1
- 101710082961 GATA-binding factor 2 Proteins 0.000 description 1
- 102000008412 GATA5 Transcription Factor Human genes 0.000 description 1
- 108010021779 GATA5 Transcription Factor Proteins 0.000 description 1
- 102000002464 Galactosidases Human genes 0.000 description 1
- 108010093031 Galactosidases Proteins 0.000 description 1
- 102000030902 Galactosyltransferase Human genes 0.000 description 1
- 108060003306 Galactosyltransferase Proteins 0.000 description 1
- 101001066288 Gallus gallus GATA-binding factor 3 Proteins 0.000 description 1
- 101000597041 Gallus gallus Transcriptional enhancer factor TEF-3 Proteins 0.000 description 1
- 108010010803 Gelatin Proteins 0.000 description 1
- 102000013382 Gelatinases Human genes 0.000 description 1
- 108010026132 Gelatinases Proteins 0.000 description 1
- 102000004878 Gelsolin Human genes 0.000 description 1
- 108090001064 Gelsolin Proteins 0.000 description 1
- 102100032863 General transcription factor IIH subunit 3 Human genes 0.000 description 1
- 102100033299 Glia-derived nexin Human genes 0.000 description 1
- 108091010837 Glial cell line-derived neurotrophic factor Proteins 0.000 description 1
- 108010073324 Glutaminase Proteins 0.000 description 1
- 102000009127 Glutaminase Human genes 0.000 description 1
- JZNWSCPGTDBMEW-UHFFFAOYSA-N Glycerophosphorylethanolamin Natural products NCCOP(O)(=O)OCC(O)CO JZNWSCPGTDBMEW-UHFFFAOYSA-N 0.000 description 1
- 239000004471 Glycine Substances 0.000 description 1
- 229920002527 Glycogen Polymers 0.000 description 1
- 102100021181 Golgi phosphoprotein 3 Human genes 0.000 description 1
- 102100034228 Grainyhead-like protein 1 homolog Human genes 0.000 description 1
- 108700010012 HMGN1 Proteins 0.000 description 1
- 101150004541 HOXC8 gene Proteins 0.000 description 1
- 208000002927 Hamartoma Diseases 0.000 description 1
- 102100034049 Heat shock factor protein 2 Human genes 0.000 description 1
- 102100039165 Heat shock protein beta-1 Human genes 0.000 description 1
- 101710100504 Heat shock protein beta-1 Proteins 0.000 description 1
- 102100031880 Helicase SRCAP Human genes 0.000 description 1
- 102100027489 Helicase-like transcription factor Human genes 0.000 description 1
- 102100021889 Helix-loop-helix protein 2 Human genes 0.000 description 1
- 108010086512 Hepatocyte Nuclear Factor 1 Proteins 0.000 description 1
- 102000006754 Hepatocyte Nuclear Factor 1 Human genes 0.000 description 1
- 102000005646 Heterogeneous-Nuclear Ribonucleoprotein K Human genes 0.000 description 1
- 108010084680 Heterogeneous-Nuclear Ribonucleoprotein K Proteins 0.000 description 1
- 102000005548 Hexokinase Human genes 0.000 description 1
- 108700040460 Hexokinases Proteins 0.000 description 1
- 102100037907 High mobility group protein B1 Human genes 0.000 description 1
- 101710168537 High mobility group protein B1 Proteins 0.000 description 1
- 108010014095 Histidine decarboxylase Proteins 0.000 description 1
- 102100037095 Histidine decarboxylase Human genes 0.000 description 1
- 102100030445 Histone H4 transcription factor Human genes 0.000 description 1
- 101710189113 Histone H4 transcription factor Proteins 0.000 description 1
- 102100039999 Histone deacetylase 2 Human genes 0.000 description 1
- 102100021455 Histone deacetylase 3 Human genes 0.000 description 1
- 102100021454 Histone deacetylase 4 Human genes 0.000 description 1
- 102100021453 Histone deacetylase 5 Human genes 0.000 description 1
- 108010016918 Histone-Lysine N-Methyltransferase Proteins 0.000 description 1
- 108050002855 Histone-lysine N-methyltransferase 2A Proteins 0.000 description 1
- 102100039489 Histone-lysine N-methyltransferase, H3 lysine-79 specific Human genes 0.000 description 1
- 108010033040 Histones Proteins 0.000 description 1
- 101150068639 Hnf4a gene Proteins 0.000 description 1
- 102100031671 Homeobox protein CDX-2 Human genes 0.000 description 1
- 102100031800 Homeobox protein ESX1 Human genes 0.000 description 1
- 102100030308 Homeobox protein Hox-A11 Human genes 0.000 description 1
- 102100030307 Homeobox protein Hox-A13 Human genes 0.000 description 1
- 102100039542 Homeobox protein Hox-A2 Human genes 0.000 description 1
- 102100039541 Homeobox protein Hox-A3 Human genes 0.000 description 1
- 102100025116 Homeobox protein Hox-A4 Human genes 0.000 description 1
- 102100025110 Homeobox protein Hox-A5 Human genes 0.000 description 1
- 102100022650 Homeobox protein Hox-A7 Human genes 0.000 description 1
- 102100028411 Homeobox protein Hox-B3 Human genes 0.000 description 1
- 102100028404 Homeobox protein Hox-B4 Human genes 0.000 description 1
- 102100025061 Homeobox protein Hox-B7 Human genes 0.000 description 1
- 102100029423 Homeobox protein Hox-B8 Human genes 0.000 description 1
- 102100029433 Homeobox protein Hox-B9 Human genes 0.000 description 1
- 102100020766 Homeobox protein Hox-C11 Human genes 0.000 description 1
- 102100020758 Homeobox protein Hox-C12 Human genes 0.000 description 1
- 102100020761 Homeobox protein Hox-C13 Human genes 0.000 description 1
- 102100020759 Homeobox protein Hox-C4 Human genes 0.000 description 1
- 102100020762 Homeobox protein Hox-C5 Human genes 0.000 description 1
- 102100022599 Homeobox protein Hox-C6 Human genes 0.000 description 1
- 102100022601 Homeobox protein Hox-C8 Human genes 0.000 description 1
- 102100022597 Homeobox protein Hox-C9 Human genes 0.000 description 1
- 102100040228 Homeobox protein Hox-D3 Human genes 0.000 description 1
- 102100021086 Homeobox protein Hox-D4 Human genes 0.000 description 1
- 102100034864 Homeobox protein Hox-D9 Human genes 0.000 description 1
- 102100029394 Homeobox protein PKNOX1 Human genes 0.000 description 1
- 102100029330 Homeobox protein PKNOX2 Human genes 0.000 description 1
- 102100035081 Homeobox protein TGIF1 Human genes 0.000 description 1
- 102100039704 Homeobox protein VENTX Human genes 0.000 description 1
- 102100030231 Homeobox protein cut-like 2 Human genes 0.000 description 1
- 101000964898 Homo sapiens 14-3-3 protein zeta/delta Proteins 0.000 description 1
- 101000733945 Homo sapiens 39S ribosomal protein L15, mitochondrial Proteins 0.000 description 1
- 101000752722 Homo sapiens Apoptosis-stimulating of p53 protein 1 Proteins 0.000 description 1
- 101000752711 Homo sapiens Apoptosis-stimulating of p53 protein 2 Proteins 0.000 description 1
- 101000768838 Homo sapiens Aryl hydrocarbon receptor nuclear translocator 2 Proteins 0.000 description 1
- 101000971234 Homo sapiens B-cell lymphoma 6 protein Proteins 0.000 description 1
- 101100382122 Homo sapiens CIITA gene Proteins 0.000 description 1
- 101000860860 Homo sapiens COUP transcription factor 2 Proteins 0.000 description 1
- 101000726098 Homo sapiens Calsenilin Proteins 0.000 description 1
- 101000952179 Homo sapiens Carbohydrate-responsive element-binding protein Proteins 0.000 description 1
- 101000891557 Homo sapiens Chitobiosyldiphosphodolichol beta-mannosyltransferase Proteins 0.000 description 1
- 101001033682 Homo sapiens Chromatin-remodeling ATPase INO80 Proteins 0.000 description 1
- 101000797586 Homo sapiens Chromobox protein homolog 2 Proteins 0.000 description 1
- 101000980066 Homo sapiens Cilia- and flagella-associated protein 410 Proteins 0.000 description 1
- 101000926718 Homo sapiens Cilium assembly protein DZIP1 Proteins 0.000 description 1
- 101000765033 Homo sapiens Class E basic helix-loop-helix protein 41 Proteins 0.000 description 1
- 101000978332 Homo sapiens Coiled-coil domain-containing protein 71 Proteins 0.000 description 1
- 101000974934 Homo sapiens Cyclic AMP-dependent transcription factor ATF-2 Proteins 0.000 description 1
- 101000905743 Homo sapiens Cyclic AMP-dependent transcription factor ATF-4 Proteins 0.000 description 1
- 101000905746 Homo sapiens Cyclic AMP-dependent transcription factor ATF-5 Proteins 0.000 description 1
- 101000905751 Homo sapiens Cyclic AMP-dependent transcription factor ATF-6 alpha Proteins 0.000 description 1
- 101001132307 Homo sapiens DNA repair protein RAD51 homolog 2 Proteins 0.000 description 1
- 101000915428 Homo sapiens Death domain-associated protein 6 Proteins 0.000 description 1
- 101000848629 Homo sapiens E3 ubiquitin-protein ligase TRIM22 Proteins 0.000 description 1
- 101000813747 Homo sapiens ETS translocation variant 4 Proteins 0.000 description 1
- 101000813135 Homo sapiens ETS-related transcription factor Elf-4 Proteins 0.000 description 1
- 101001056455 Homo sapiens Endosome-associated-trafficking regulator 1 Proteins 0.000 description 1
- 101001064167 Homo sapiens Eomesodermin homolog Proteins 0.000 description 1
- 101000697353 Homo sapiens FACT complex subunit SSRP1 Proteins 0.000 description 1
- 101000818305 Homo sapiens Forkhead box protein C2 Proteins 0.000 description 1
- 101001029314 Homo sapiens Forkhead box protein D2 Proteins 0.000 description 1
- 101001029308 Homo sapiens Forkhead box protein D3 Proteins 0.000 description 1
- 101000931489 Homo sapiens Forkhead box protein E3 Proteins 0.000 description 1
- 101000931482 Homo sapiens Forkhead box protein F2 Proteins 0.000 description 1
- 101000892910 Homo sapiens Forkhead box protein J1 Proteins 0.000 description 1
- 101001023387 Homo sapiens Forkhead box protein J3 Proteins 0.000 description 1
- 101000907576 Homo sapiens Forkhead box protein N1 Proteins 0.000 description 1
- 101000907593 Homo sapiens Forkhead box protein N2 Proteins 0.000 description 1
- 101000907594 Homo sapiens Forkhead box protein N3 Proteins 0.000 description 1
- 101001059881 Homo sapiens Forkhead box protein P2 Proteins 0.000 description 1
- 101000861452 Homo sapiens Forkhead box protein P3 Proteins 0.000 description 1
- 101001022098 Homo sapiens GA-binding protein subunit beta-1 Proteins 0.000 description 1
- 101000666405 Homo sapiens General transcription factor IIH subunit 1 Proteins 0.000 description 1
- 101000655398 Homo sapiens General transcription factor IIH subunit 2 Proteins 0.000 description 1
- 101000655391 Homo sapiens General transcription factor IIH subunit 3 Proteins 0.000 description 1
- 101000655406 Homo sapiens General transcription factor IIH subunit 4 Proteins 0.000 description 1
- 101000655402 Homo sapiens General transcription factor IIH subunit 5 Proteins 0.000 description 1
- 101000997803 Homo sapiens Glia-derived nexin Proteins 0.000 description 1
- 101000997829 Homo sapiens Glial cell line-derived neurotrophic factor Proteins 0.000 description 1
- 101001069933 Homo sapiens Grainyhead-like protein 1 homolog Proteins 0.000 description 1
- 101100395337 Homo sapiens HMGA2 gene Proteins 0.000 description 1
- 101001016883 Homo sapiens Heat shock factor protein 2 Proteins 0.000 description 1
- 101000704158 Homo sapiens Helicase SRCAP Proteins 0.000 description 1
- 101001081105 Homo sapiens Helicase-like transcription factor Proteins 0.000 description 1
- 101000897700 Homo sapiens Helix-loop-helix protein 2 Proteins 0.000 description 1
- 101001046967 Homo sapiens Histone acetyltransferase KAT2A Proteins 0.000 description 1
- 101001035011 Homo sapiens Histone deacetylase 2 Proteins 0.000 description 1
- 101000899282 Homo sapiens Histone deacetylase 3 Proteins 0.000 description 1
- 101000899259 Homo sapiens Histone deacetylase 4 Proteins 0.000 description 1
- 101000899255 Homo sapiens Histone deacetylase 5 Proteins 0.000 description 1
- 101001028782 Homo sapiens Histone-lysine N-methyltransferase EZH1 Proteins 0.000 description 1
- 101000963360 Homo sapiens Histone-lysine N-methyltransferase, H3 lysine-79 specific Proteins 0.000 description 1
- 101000920856 Homo sapiens Homeobox protein ESX1 Proteins 0.000 description 1
- 101001083156 Homo sapiens Homeobox protein Hox-A1 Proteins 0.000 description 1
- 101001083164 Homo sapiens Homeobox protein Hox-A10 Proteins 0.000 description 1
- 101001083162 Homo sapiens Homeobox protein Hox-A13 Proteins 0.000 description 1
- 101000962636 Homo sapiens Homeobox protein Hox-A2 Proteins 0.000 description 1
- 101001041174 Homo sapiens Homeobox protein Hox-A9 Proteins 0.000 description 1
- 101000839775 Homo sapiens Homeobox protein Hox-B3 Proteins 0.000 description 1
- 101000839788 Homo sapiens Homeobox protein Hox-B4 Proteins 0.000 description 1
- 101001077539 Homo sapiens Homeobox protein Hox-B7 Proteins 0.000 description 1
- 101000988994 Homo sapiens Homeobox protein Hox-B8 Proteins 0.000 description 1
- 101000989000 Homo sapiens Homeobox protein Hox-B9 Proteins 0.000 description 1
- 101001003015 Homo sapiens Homeobox protein Hox-C11 Proteins 0.000 description 1
- 101001002991 Homo sapiens Homeobox protein Hox-C12 Proteins 0.000 description 1
- 101001002988 Homo sapiens Homeobox protein Hox-C13 Proteins 0.000 description 1
- 101001002994 Homo sapiens Homeobox protein Hox-C4 Proteins 0.000 description 1
- 101001002966 Homo sapiens Homeobox protein Hox-C5 Proteins 0.000 description 1
- 101001045154 Homo sapiens Homeobox protein Hox-C6 Proteins 0.000 description 1
- 101001045158 Homo sapiens Homeobox protein Hox-C8 Proteins 0.000 description 1
- 101001045140 Homo sapiens Homeobox protein Hox-C9 Proteins 0.000 description 1
- 101001037158 Homo sapiens Homeobox protein Hox-D3 Proteins 0.000 description 1
- 101001041136 Homo sapiens Homeobox protein Hox-D4 Proteins 0.000 description 1
- 101001019766 Homo sapiens Homeobox protein Hox-D9 Proteins 0.000 description 1
- 101001125957 Homo sapiens Homeobox protein PKNOX1 Proteins 0.000 description 1
- 101001125949 Homo sapiens Homeobox protein PKNOX2 Proteins 0.000 description 1
- 101000596925 Homo sapiens Homeobox protein TGIF1 Proteins 0.000 description 1
- 101000667986 Homo sapiens Homeobox protein VENTX Proteins 0.000 description 1
- 101000726714 Homo sapiens Homeobox protein cut-like 2 Proteins 0.000 description 1
- 101001021527 Homo sapiens Huntingtin-interacting protein 1 Proteins 0.000 description 1
- 101001033233 Homo sapiens Interleukin-10 Proteins 0.000 description 1
- 101001046537 Homo sapiens Kinesin-like protein KIFC2 Proteins 0.000 description 1
- 101001006895 Homo sapiens Krueppel-like factor 11 Proteins 0.000 description 1
- 101001006886 Homo sapiens Krueppel-like factor 12 Proteins 0.000 description 1
- 101001046564 Homo sapiens Krueppel-like factor 13 Proteins 0.000 description 1
- 101001046593 Homo sapiens Krueppel-like factor 16 Proteins 0.000 description 1
- 101001139146 Homo sapiens Krueppel-like factor 2 Proteins 0.000 description 1
- 101001139134 Homo sapiens Krueppel-like factor 4 Proteins 0.000 description 1
- 101001139130 Homo sapiens Krueppel-like factor 5 Proteins 0.000 description 1
- 101001139117 Homo sapiens Krueppel-like factor 7 Proteins 0.000 description 1
- 101001020544 Homo sapiens LIM/homeobox protein Lhx2 Proteins 0.000 description 1
- 101000619914 Homo sapiens LIM/homeobox protein Lhx5 Proteins 0.000 description 1
- 101000619910 Homo sapiens LIM/homeobox protein Lhx6 Proteins 0.000 description 1
- 101001044093 Homo sapiens Lipopolysaccharide-induced tumor necrosis factor-alpha factor Proteins 0.000 description 1
- 101000624625 Homo sapiens M-phase inducer phosphatase 1 Proteins 0.000 description 1
- 101100456961 Homo sapiens MEX3B gene Proteins 0.000 description 1
- 101001005664 Homo sapiens Mastermind-like protein 1 Proteins 0.000 description 1
- 101001033726 Homo sapiens Methyl-CpG-binding protein 2 Proteins 0.000 description 1
- 101000928479 Homo sapiens Microtubule organization protein AKNA Proteins 0.000 description 1
- 101000958041 Homo sapiens Musculin Proteins 0.000 description 1
- 101001128495 Homo sapiens Myeloid zinc finger 1 Proteins 0.000 description 1
- 101001023043 Homo sapiens Myoblast determination protein 1 Proteins 0.000 description 1
- 101000589002 Homo sapiens Myogenin Proteins 0.000 description 1
- 101000979909 Homo sapiens NMDA receptor synaptonuclear signaling and neuronal migration factor Proteins 0.000 description 1
- 101000603702 Homo sapiens Neurogenin-3 Proteins 0.000 description 1
- 101000634537 Homo sapiens Neuronal PAS domain-containing protein 2 Proteins 0.000 description 1
- 101001111328 Homo sapiens Nuclear factor 1 A-type Proteins 0.000 description 1
- 101000979347 Homo sapiens Nuclear factor 1 X-type Proteins 0.000 description 1
- 101000588303 Homo sapiens Nuclear factor erythroid 2-related factor 3 Proteins 0.000 description 1
- 101000973177 Homo sapiens Nuclear factor interleukin-3-regulated protein Proteins 0.000 description 1
- 101000602930 Homo sapiens Nuclear receptor coactivator 2 Proteins 0.000 description 1
- 101000582254 Homo sapiens Nuclear receptor corepressor 2 Proteins 0.000 description 1
- 101000633516 Homo sapiens Nuclear receptor subfamily 2 group F member 6 Proteins 0.000 description 1
- 101001000780 Homo sapiens POU domain, class 2, transcription factor 1 Proteins 0.000 description 1
- 101001000773 Homo sapiens POU domain, class 2, transcription factor 2 Proteins 0.000 description 1
- 101000572989 Homo sapiens POU domain, class 3, transcription factor 3 Proteins 0.000 description 1
- 101000572950 Homo sapiens POU domain, class 3, transcription factor 4 Proteins 0.000 description 1
- 101001094737 Homo sapiens POU domain, class 4, transcription factor 3 Proteins 0.000 description 1
- 101000738966 Homo sapiens POU domain, class 6, transcription factor 1 Proteins 0.000 description 1
- 101000595669 Homo sapiens Pituitary homeobox 2 Proteins 0.000 description 1
- 101000595674 Homo sapiens Pituitary homeobox 3 Proteins 0.000 description 1
- 101001047090 Homo sapiens Potassium voltage-gated channel subfamily H member 2 Proteins 0.000 description 1
- 101000619116 Homo sapiens Proline-rich protein 12 Proteins 0.000 description 1
- 101000892360 Homo sapiens Protein AF-17 Proteins 0.000 description 1
- 101000721172 Homo sapiens Protein DBF4 homolog A Proteins 0.000 description 1
- 101001133957 Homo sapiens Putative POU domain, class 5, transcription factor 1B Proteins 0.000 description 1
- 101000968552 Homo sapiens Putative double homeobox protein 3 Proteins 0.000 description 1
- 101000629813 Homo sapiens RNA-binding protein MEX3B Proteins 0.000 description 1
- 101000640882 Homo sapiens Retinoic acid receptor RXR-gamma Proteins 0.000 description 1
- 101000703463 Homo sapiens Rho GTPase-activating protein 35 Proteins 0.000 description 1
- 101000703425 Homo sapiens Rho GTPase-activating protein 39 Proteins 0.000 description 1
- 101000703439 Homo sapiens Rho GTPase-activating protein 42 Proteins 0.000 description 1
- 101000857682 Homo sapiens Runt-related transcription factor 2 Proteins 0.000 description 1
- 101000694550 Homo sapiens RuvB-like 1 Proteins 0.000 description 1
- 101000711466 Homo sapiens SAM pointed domain-containing Ets transcription factor Proteins 0.000 description 1
- 101001059454 Homo sapiens Serine/threonine-protein kinase MARK2 Proteins 0.000 description 1
- 101000688996 Homo sapiens Ski-like protein Proteins 0.000 description 1
- 101000851696 Homo sapiens Steroid hormone receptor ERR2 Proteins 0.000 description 1
- 101000713590 Homo sapiens T-box transcription factor TBX1 Proteins 0.000 description 1
- 101000653635 Homo sapiens T-box transcription factor TBX18 Proteins 0.000 description 1
- 101000713596 Homo sapiens T-box transcription factor TBX19 Proteins 0.000 description 1
- 101000713602 Homo sapiens T-box transcription factor TBX21 Proteins 0.000 description 1
- 101000625913 Homo sapiens T-box transcription factor TBX4 Proteins 0.000 description 1
- 101000625859 Homo sapiens T-box transcription factor TBX6 Proteins 0.000 description 1
- 101000655119 Homo sapiens T-cell leukemia homeobox protein 3 Proteins 0.000 description 1
- 101000596086 Homo sapiens TATA box-binding protein-associated factor RNA polymerase I subunit D Proteins 0.000 description 1
- 101000702545 Homo sapiens Transcription activator BRG1 Proteins 0.000 description 1
- 101000663444 Homo sapiens Transcription elongation factor SPT4 Proteins 0.000 description 1
- 101000655403 Homo sapiens Transcription factor CP2-like protein 1 Proteins 0.000 description 1
- 101000837845 Homo sapiens Transcription factor E3 Proteins 0.000 description 1
- 101000843556 Homo sapiens Transcription factor HES-1 Proteins 0.000 description 1
- 101000723923 Homo sapiens Transcription factor HIVEP2 Proteins 0.000 description 1
- 101001023770 Homo sapiens Transcription factor NF-E2 45 kDa subunit Proteins 0.000 description 1
- 101001075434 Homo sapiens Transcription factor RFX4 Proteins 0.000 description 1
- 101000800860 Homo sapiens Transcription initiation factor IIB Proteins 0.000 description 1
- 101000596093 Homo sapiens Transcription initiation factor TFIID subunit 1 Proteins 0.000 description 1
- 101000652707 Homo sapiens Transcription initiation factor TFIID subunit 4 Proteins 0.000 description 1
- 101000636213 Homo sapiens Transcriptional activator Myb Proteins 0.000 description 1
- 101001131930 Homo sapiens Transcriptional activator protein Pur-beta Proteins 0.000 description 1
- 101000652684 Homo sapiens Transcriptional adapter 3 Proteins 0.000 description 1
- 101000653735 Homo sapiens Transcriptional enhancer factor TEF-1 Proteins 0.000 description 1
- 101000597043 Homo sapiens Transcriptional enhancer factor TEF-5 Proteins 0.000 description 1
- 101000796673 Homo sapiens Transformation/transcription domain-associated protein Proteins 0.000 description 1
- 101000971144 Homo sapiens Tyrosine-protein kinase BAZ1B Proteins 0.000 description 1
- 101000671637 Homo sapiens Upstream stimulatory factor 1 Proteins 0.000 description 1
- 101000671649 Homo sapiens Upstream stimulatory factor 2 Proteins 0.000 description 1
- 101100377226 Homo sapiens ZBTB16 gene Proteins 0.000 description 1
- 101100321437 Homo sapiens ZFAT gene Proteins 0.000 description 1
- 101000785559 Homo sapiens Zinc finger and SCAN domain-containing protein 26 Proteins 0.000 description 1
- 101000976577 Homo sapiens Zinc finger protein 124 Proteins 0.000 description 1
- 101000759226 Homo sapiens Zinc finger protein 143 Proteins 0.000 description 1
- 101000760175 Homo sapiens Zinc finger protein 35 Proteins 0.000 description 1
- 101000964713 Homo sapiens Zinc finger protein 395 Proteins 0.000 description 1
- 101000964706 Homo sapiens Zinc finger protein 398 Proteins 0.000 description 1
- 101000782464 Homo sapiens Zinc finger protein 444 Proteins 0.000 description 1
- 101000964736 Homo sapiens Zinc finger protein 7 Proteins 0.000 description 1
- 101000964726 Homo sapiens Zinc finger protein 76 Proteins 0.000 description 1
- 101000743811 Homo sapiens Zinc finger protein 85 Proteins 0.000 description 1
- 101000857273 Homo sapiens Zinc finger protein GLIS2 Proteins 0.000 description 1
- 101000730644 Homo sapiens Zinc finger protein PLAGL2 Proteins 0.000 description 1
- 101000873785 Homo sapiens mRNA-decapping enzyme 1A Proteins 0.000 description 1
- 101000687642 Homo sapiens snRNA-activating protein complex subunit 1 Proteins 0.000 description 1
- 101000687648 Homo sapiens snRNA-activating protein complex subunit 2 Proteins 0.000 description 1
- 101000825856 Homo sapiens snRNA-activating protein complex subunit 3 Proteins 0.000 description 1
- 101000825848 Homo sapiens snRNA-activating protein complex subunit 4 Proteins 0.000 description 1
- 102000003839 Human Proteins Human genes 0.000 description 1
- 108090000144 Human Proteins Proteins 0.000 description 1
- 241000701044 Human gammaherpesvirus 4 Species 0.000 description 1
- 241001502974 Human gammaherpesvirus 8 Species 0.000 description 1
- 102100035957 Huntingtin-interacting protein 1 Human genes 0.000 description 1
- 102000004157 Hydrolases Human genes 0.000 description 1
- 108090000604 Hydrolases Proteins 0.000 description 1
- 102000006933 Hydroxymethyl and Formyl Transferases Human genes 0.000 description 1
- 108010072462 Hydroxymethyl and Formyl Transferases Proteins 0.000 description 1
- 102100031612 Hypermethylated in cancer 1 protein Human genes 0.000 description 1
- 101710133850 Hypermethylated in cancer 1 protein Proteins 0.000 description 1
- 101150027427 ICP4 gene Proteins 0.000 description 1
- 108010087227 IMP Dehydrogenase Proteins 0.000 description 1
- 102000006674 IMP dehydrogenase Human genes 0.000 description 1
- 102000018071 Immunoglobulin Fc Fragments Human genes 0.000 description 1
- 108010091135 Immunoglobulin Fc Fragments Proteins 0.000 description 1
- 108010075418 Immunoglobulin J Recombination Signal Sequence Binding Protein Proteins 0.000 description 1
- 102000008047 Immunoglobulin J Recombination Signal Sequence Binding Protein Human genes 0.000 description 1
- 206010061216 Infarction Diseases 0.000 description 1
- 206010061218 Inflammation Diseases 0.000 description 1
- 102100027636 Insulin-like growth factor-binding protein 1 Human genes 0.000 description 1
- 108090000957 Insulin-like growth factor-binding protein 1 Proteins 0.000 description 1
- 102000003815 Interleukin-11 Human genes 0.000 description 1
- 108090000177 Interleukin-11 Proteins 0.000 description 1
- 102000004310 Ion Channels Human genes 0.000 description 1
- 108090000862 Ion Channels Proteins 0.000 description 1
- 108020003285 Isocitrate lyase Proteins 0.000 description 1
- 102000004195 Isomerases Human genes 0.000 description 1
- 108090000769 Isomerases Proteins 0.000 description 1
- 101150026829 JUNB gene Proteins 0.000 description 1
- 101150021395 JUND gene Proteins 0.000 description 1
- 102000001399 Kallikrein Human genes 0.000 description 1
- 108060005987 Kallikrein Proteins 0.000 description 1
- 108010076876 Keratins Proteins 0.000 description 1
- 102000011782 Keratins Human genes 0.000 description 1
- 102100022251 Kinesin-like protein KIFC2 Human genes 0.000 description 1
- 102100022248 Krueppel-like factor 1 Human genes 0.000 description 1
- 102100027798 Krueppel-like factor 10 Human genes 0.000 description 1
- 101710166468 Krueppel-like factor 10 Proteins 0.000 description 1
- 102100027797 Krueppel-like factor 11 Human genes 0.000 description 1
- 102100027792 Krueppel-like factor 12 Human genes 0.000 description 1
- 102100022254 Krueppel-like factor 13 Human genes 0.000 description 1
- 102100022324 Krueppel-like factor 16 Human genes 0.000 description 1
- 102100020675 Krueppel-like factor 2 Human genes 0.000 description 1
- 102100020678 Krueppel-like factor 3 Human genes 0.000 description 1
- 101710116712 Krueppel-like factor 3 Proteins 0.000 description 1
- 102100020677 Krueppel-like factor 4 Human genes 0.000 description 1
- 102100020680 Krueppel-like factor 5 Human genes 0.000 description 1
- 102100020679 Krueppel-like factor 6 Human genes 0.000 description 1
- 102100020692 Krueppel-like factor 7 Human genes 0.000 description 1
- 108010049058 Kruppel-Like Factor 6 Proteins 0.000 description 1
- 102000015335 Ku Autoantigen Human genes 0.000 description 1
- 108010025026 Ku Autoantigen Proteins 0.000 description 1
- AHLPHDHHMVZTML-BYPYZUCNSA-N L-Ornithine Chemical compound NCCC[C@H](N)C(O)=O AHLPHDHHMVZTML-BYPYZUCNSA-N 0.000 description 1
- 150000008575 L-amino acids Chemical class 0.000 description 1
- 102000003855 L-lactate dehydrogenase Human genes 0.000 description 1
- 108700023483 L-lactate dehydrogenases Proteins 0.000 description 1
- 102100036132 LIM/homeobox protein Lhx2 Human genes 0.000 description 1
- 102100022139 LIM/homeobox protein Lhx5 Human genes 0.000 description 1
- 102100022098 LIM/homeobox protein Lhx6 Human genes 0.000 description 1
- 108010063045 Lactoferrin Proteins 0.000 description 1
- 102100032241 Lactotransferrin Human genes 0.000 description 1
- 229920006063 Lamide® Polymers 0.000 description 1
- 108010028275 Leukocyte Elastase Proteins 0.000 description 1
- 102100021607 Lipopolysaccharide-induced tumor necrosis factor-alpha factor Human genes 0.000 description 1
- 108090001030 Lipoproteins Proteins 0.000 description 1
- 102000004895 Lipoproteins Human genes 0.000 description 1
- 102000003820 Lipoxygenases Human genes 0.000 description 1
- 108090000128 Lipoxygenases Proteins 0.000 description 1
- 208000028018 Lymphocytic leukaemia Diseases 0.000 description 1
- 108090001093 Lymphoid enhancer-binding factor 1 Proteins 0.000 description 1
- 102100037611 Lysophospholipase Human genes 0.000 description 1
- 102100023326 M-phase inducer phosphatase 1 Human genes 0.000 description 1
- 101150022636 MAFB gene Proteins 0.000 description 1
- 102100026371 MHC class II transactivator Human genes 0.000 description 1
- 108700002010 MHC class II transactivator Proteins 0.000 description 1
- FYYHWMGAXLPEAU-UHFFFAOYSA-N Magnesium Chemical compound [Mg] FYYHWMGAXLPEAU-UHFFFAOYSA-N 0.000 description 1
- 101710125418 Major capsid protein Proteins 0.000 description 1
- 108010026217 Malate Dehydrogenase Proteins 0.000 description 1
- 102000013460 Malate Dehydrogenase Human genes 0.000 description 1
- 206010064912 Malignant transformation Diseases 0.000 description 1
- 102000001696 Mannosidases Human genes 0.000 description 1
- 108010054377 Mannosidases Proteins 0.000 description 1
- 102100025129 Mastermind-like protein 1 Human genes 0.000 description 1
- 102100030200 Matrix metalloproteinase-16 Human genes 0.000 description 1
- 108090000561 Matrix metalloproteinase-16 Proteins 0.000 description 1
- 102000012750 Membrane Glycoproteins Human genes 0.000 description 1
- 108010090054 Membrane Glycoproteins Proteins 0.000 description 1
- 102000006890 Methyl-CpG-Binding Protein 2 Human genes 0.000 description 1
- 108010072388 Methyl-CpG-Binding Protein 2 Proteins 0.000 description 1
- 102100036470 Microtubule organization protein AKNA Human genes 0.000 description 1
- 102100030610 Mothers against decapentaplegic homolog 5 Human genes 0.000 description 1
- 101710143113 Mothers against decapentaplegic homolog 5 Proteins 0.000 description 1
- 102100030590 Mothers against decapentaplegic homolog 6 Human genes 0.000 description 1
- 101710143114 Mothers against decapentaplegic homolog 6 Proteins 0.000 description 1
- 102100030608 Mothers against decapentaplegic homolog 7 Human genes 0.000 description 1
- 101150118570 Msx2 gene Proteins 0.000 description 1
- 102000016943 Muramidase Human genes 0.000 description 1
- 108010014251 Muramidase Proteins 0.000 description 1
- 241001529936 Murinae Species 0.000 description 1
- 241000699666 Mus <mouse, genus> Species 0.000 description 1
- 101100220214 Mus musculus Cdx4 gene Proteins 0.000 description 1
- 101100444898 Mus musculus Egr1 gene Proteins 0.000 description 1
- 101100445099 Mus musculus Emx1 gene Proteins 0.000 description 1
- 101100445103 Mus musculus Emx2 gene Proteins 0.000 description 1
- 101100446506 Mus musculus Fgf3 gene Proteins 0.000 description 1
- 101100121434 Mus musculus Gcm1 gene Proteins 0.000 description 1
- 101100176745 Mus musculus Gsc2 gene Proteins 0.000 description 1
- 101100018264 Mus musculus Hoxb4 gene Proteins 0.000 description 1
- 101100451915 Mus musculus Hoxb5 gene Proteins 0.000 description 1
- 101100451924 Mus musculus Hoxb6 gene Proteins 0.000 description 1
- 101100289867 Mus musculus Lyl1 gene Proteins 0.000 description 1
- 101100405118 Mus musculus Nr4a1 gene Proteins 0.000 description 1
- 101100518987 Mus musculus Pax1 gene Proteins 0.000 description 1
- 101100518992 Mus musculus Pax2 gene Proteins 0.000 description 1
- 101100518997 Mus musculus Pax3 gene Proteins 0.000 description 1
- 101100351020 Mus musculus Pax5 gene Proteins 0.000 description 1
- 101100351033 Mus musculus Pax7 gene Proteins 0.000 description 1
- 101100462885 Mus musculus Pax9 gene Proteins 0.000 description 1
- 101100521345 Mus musculus Prop1 gene Proteins 0.000 description 1
- 101100310657 Mus musculus Sox1 gene Proteins 0.000 description 1
- 101100366231 Mus musculus Sox12 gene Proteins 0.000 description 1
- 101100310648 Mus musculus Sox17 gene Proteins 0.000 description 1
- 101100257376 Mus musculus Sox3 gene Proteins 0.000 description 1
- 101100043050 Mus musculus Sox4 gene Proteins 0.000 description 1
- 101100043062 Mus musculus Sox7 gene Proteins 0.000 description 1
- 102100038169 Musculin Human genes 0.000 description 1
- 102100034711 Myb-related protein A Human genes 0.000 description 1
- 101710115158 Myb-related protein A Proteins 0.000 description 1
- 102100038893 Myelin transcription factor 1 Human genes 0.000 description 1
- 101710104371 Myelin transcription factor 1 Proteins 0.000 description 1
- 108700041619 Myeloid Ecotropic Viral Integration Site 1 Proteins 0.000 description 1
- 102000047831 Myeloid Ecotropic Viral Integration Site 1 Human genes 0.000 description 1
- 102100031827 Myeloid zinc finger 1 Human genes 0.000 description 1
- 108010075393 Myeloid-Lymphoid Leukemia Protein Proteins 0.000 description 1
- 102100035077 Myoblast determination protein 1 Human genes 0.000 description 1
- 102100030217 Myocardin Human genes 0.000 description 1
- 108010081823 Myocardin Proteins 0.000 description 1
- 108091005975 Myofilaments Proteins 0.000 description 1
- 102100038380 Myogenic factor 5 Human genes 0.000 description 1
- 101710099061 Myogenic factor 5 Proteins 0.000 description 1
- 102100038379 Myogenic factor 6 Human genes 0.000 description 1
- 102100032970 Myogenin Human genes 0.000 description 1
- 108010034119 Myosin Subfragments Proteins 0.000 description 1
- 108010062010 N-Acetylmuramoyl-L-alanine Amidase Proteins 0.000 description 1
- 108700026495 N-Myc Proto-Oncogene Proteins 0.000 description 1
- 102100030124 N-myc proto-oncogene protein Human genes 0.000 description 1
- 102000004960 NAD(P)H dehydrogenase (quinone) Human genes 0.000 description 1
- 108020000284 NAD(P)H dehydrogenase (quinone) Proteins 0.000 description 1
- 102000002250 NAD+ Nucleosidase Human genes 0.000 description 1
- 108010000193 NAD+ Nucleosidase Proteins 0.000 description 1
- 108010071380 NF-E2-Related Factor 1 Proteins 0.000 description 1
- 108010057466 NF-kappa B Proteins 0.000 description 1
- 101150111110 NKX2-1 gene Proteins 0.000 description 1
- 102100024546 NMDA receptor synaptonuclear signaling and neuronal migration factor Human genes 0.000 description 1
- 238000005481 NMR spectroscopy Methods 0.000 description 1
- 102000048850 Neoplasm Genes Human genes 0.000 description 1
- 108700019961 Neoplasm Genes Proteins 0.000 description 1
- 206010029098 Neoplasm skin Diseases 0.000 description 1
- 102100038553 Neurogenin-3 Human genes 0.000 description 1
- 102100029045 Neuronal PAS domain-containing protein 2 Human genes 0.000 description 1
- 101100043306 Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) ctc-2 gene Proteins 0.000 description 1
- 101100445499 Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) erg-1 gene Proteins 0.000 description 1
- 101100287577 Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) gpe-1 gene Proteins 0.000 description 1
- 102100033174 Neutrophil elastase Human genes 0.000 description 1
- 239000000020 Nitrocellulose Substances 0.000 description 1
- 101150095442 Nr1h2 gene Proteins 0.000 description 1
- 108010077850 Nuclear Localization Signals Proteins 0.000 description 1
- 102000007999 Nuclear Proteins Human genes 0.000 description 1
- 108010089610 Nuclear Proteins Proteins 0.000 description 1
- 108090001146 Nuclear Receptor Coactivator 1 Proteins 0.000 description 1
- 108090001145 Nuclear Receptor Coactivator 3 Proteins 0.000 description 1
- 108010016592 Nuclear Respiratory Factor 1 Proteins 0.000 description 1
- 101710205482 Nuclear factor 1 A-type Proteins 0.000 description 1
- 102100023049 Nuclear factor 1 X-type Human genes 0.000 description 1
- 101710140810 Nuclear factor 1 X-type Proteins 0.000 description 1
- 102100023050 Nuclear factor NF-kappa-B p105 subunit Human genes 0.000 description 1
- 102100031700 Nuclear factor erythroid 2-related factor 3 Human genes 0.000 description 1
- 102100022163 Nuclear factor interleukin-3-regulated protein Human genes 0.000 description 1
- 102100035413 Nuclear factor of activated T-cells 5 Human genes 0.000 description 1
- 108050006769 Nuclear factor of activated T-cells 5 Proteins 0.000 description 1
- 102100037223 Nuclear receptor coactivator 1 Human genes 0.000 description 1
- 102100037226 Nuclear receptor coactivator 2 Human genes 0.000 description 1
- 102100022883 Nuclear receptor coactivator 3 Human genes 0.000 description 1
- 102100022929 Nuclear receptor coactivator 6 Human genes 0.000 description 1
- 101710115514 Nuclear receptor coactivator 6 Proteins 0.000 description 1
- 102100030569 Nuclear receptor corepressor 2 Human genes 0.000 description 1
- 102100023171 Nuclear receptor subfamily 1 group D member 2 Human genes 0.000 description 1
- 102100029528 Nuclear receptor subfamily 2 group F member 6 Human genes 0.000 description 1
- 102100022679 Nuclear receptor subfamily 4 group A member 1 Human genes 0.000 description 1
- 102100034408 Nuclear transcription factor Y subunit alpha Human genes 0.000 description 1
- 101710115878 Nuclear transcription factor Y subunit alpha Proteins 0.000 description 1
- 108010025568 Nucleophosmin Proteins 0.000 description 1
- 101710141454 Nucleoprotein Proteins 0.000 description 1
- IGROSIFOXXJJJJ-QMMMGPOBSA-N OCN([C@@H](CCSC)C(=O)O)C(CCCC(=O)O)=O Chemical compound OCN([C@@H](CCSC)C(=O)O)C(CCCC(=O)O)=O IGROSIFOXXJJJJ-QMMMGPOBSA-N 0.000 description 1
- 101150092239 OTX2 gene Proteins 0.000 description 1
- 108010058765 Oncogene Protein pp60(v-src) Proteins 0.000 description 1
- 108010078627 Oncogene Protein v-crk Proteins 0.000 description 1
- 108010072293 Oncogene Proteins v-mos Proteins 0.000 description 1
- AHLPHDHHMVZTML-UHFFFAOYSA-N Orn-delta-NH2 Natural products NCCCC(N)C(O)=O AHLPHDHHMVZTML-UHFFFAOYSA-N 0.000 description 1
- UTJLXEIPEHZYQJ-UHFFFAOYSA-N Ornithine Natural products OC(=O)C(C)CCCN UTJLXEIPEHZYQJ-UHFFFAOYSA-N 0.000 description 1
- 101150041192 Otx1 gene Proteins 0.000 description 1
- 102000004020 Oxygenases Human genes 0.000 description 1
- 108090000417 Oxygenases Proteins 0.000 description 1
- 102000017946 PGC-1 Human genes 0.000 description 1
- 108700038399 PGC-1 Proteins 0.000 description 1
- 101150062967 PHOX2A gene Proteins 0.000 description 1
- 102100030476 POU domain class 2-associating factor 1 Human genes 0.000 description 1
- 101710114665 POU domain class 2-associating factor 1 Proteins 0.000 description 1
- 102100035593 POU domain, class 2, transcription factor 1 Human genes 0.000 description 1
- 102100035591 POU domain, class 2, transcription factor 2 Human genes 0.000 description 1
- 102100026456 POU domain, class 3, transcription factor 3 Human genes 0.000 description 1
- 102100026450 POU domain, class 3, transcription factor 4 Human genes 0.000 description 1
- 102100035398 POU domain, class 4, transcription factor 3 Human genes 0.000 description 1
- 102100037483 POU domain, class 6, transcription factor 1 Human genes 0.000 description 1
- 102000025443 POZ domain binding proteins Human genes 0.000 description 1
- 108091014659 POZ domain binding proteins Proteins 0.000 description 1
- 101150012195 PREB gene Proteins 0.000 description 1
- 102000016387 Pancreatic elastase Human genes 0.000 description 1
- 108010067372 Pancreatic elastase Proteins 0.000 description 1
- 206010061902 Pancreatic neoplasm Diseases 0.000 description 1
- 229930040373 Paraformaldehyde Natural products 0.000 description 1
- 101100536300 Pasteurella multocida (strain Pm70) talB gene Proteins 0.000 description 1
- 102100020739 Peptidyl-prolyl cis-trans isomerase FKBP4 Human genes 0.000 description 1
- 108010020062 Peptidylprolyl Isomerase Proteins 0.000 description 1
- 102000009658 Peptidylprolyl Isomerase Human genes 0.000 description 1
- 102100038824 Peroxisome proliferator-activated receptor delta Human genes 0.000 description 1
- 108030002254 Phosphate acyltransferases Proteins 0.000 description 1
- 108010069394 Phosphatidate Phosphatase Proteins 0.000 description 1
- 102000001107 Phosphatidate Phosphatase Human genes 0.000 description 1
- 102000001105 Phosphofructokinases Human genes 0.000 description 1
- 108010069341 Phosphofructokinases Proteins 0.000 description 1
- 102000009569 Phosphoglucomutase Human genes 0.000 description 1
- 102000011420 Phospholipase D Human genes 0.000 description 1
- 108090000553 Phospholipase D Proteins 0.000 description 1
- 108010058864 Phospholipases A2 Proteins 0.000 description 1
- 102000007982 Phosphoproteins Human genes 0.000 description 1
- 108010089430 Phosphoproteins Proteins 0.000 description 1
- 108010022181 Phosphopyruvate Hydratase Proteins 0.000 description 1
- 102000012288 Phosphopyruvate Hydratase Human genes 0.000 description 1
- 108090000608 Phosphoric Monoester Hydrolases Proteins 0.000 description 1
- 102000004160 Phosphoric Monoester Hydrolases Human genes 0.000 description 1
- ZYFVNVRFVHJEIU-UHFFFAOYSA-N PicoGreen Chemical compound CN(C)CCCN(CCCN(C)C)C1=CC(=CC2=[N+](C3=CC=CC=C3S2)C)C2=CC=CC=C2N1C1=CC=CC=C1 ZYFVNVRFVHJEIU-UHFFFAOYSA-N 0.000 description 1
- 102100036090 Pituitary homeobox 2 Human genes 0.000 description 1
- 102100036088 Pituitary homeobox 3 Human genes 0.000 description 1
- 102100038124 Plasminogen Human genes 0.000 description 1
- 108010051456 Plasminogen Proteins 0.000 description 1
- 239000004952 Polyamide Substances 0.000 description 1
- 108010021757 Polynucleotide 5'-Hydroxyl-Kinase Proteins 0.000 description 1
- 102000008422 Polynucleotide 5'-hydroxyl-kinase Human genes 0.000 description 1
- 208000037062 Polyps Diseases 0.000 description 1
- 108010013381 Porins Proteins 0.000 description 1
- 102000017033 Porins Human genes 0.000 description 1
- 108010012271 Positive Transcriptional Elongation Factor B Proteins 0.000 description 1
- 102000019014 Positive Transcriptional Elongation Factor B Human genes 0.000 description 1
- ZLMJMSJWJFRBEC-UHFFFAOYSA-N Potassium Chemical compound [K] ZLMJMSJWJFRBEC-UHFFFAOYSA-N 0.000 description 1
- 102100022807 Potassium voltage-gated channel subfamily H member 2 Human genes 0.000 description 1
- 101710083689 Probable capsid protein Proteins 0.000 description 1
- 102100022637 Proline-rich protein 12 Human genes 0.000 description 1
- 108700003766 Promyelocytic Leukemia Zinc Finger Proteins 0.000 description 1
- 102100038567 Properdin Human genes 0.000 description 1
- 108010005642 Properdin Proteins 0.000 description 1
- 108700017836 Prophet of Pit-1 Proteins 0.000 description 1
- 108090000459 Prostaglandin-endoperoxide synthases Proteins 0.000 description 1
- 102000004005 Prostaglandin-endoperoxide synthases Human genes 0.000 description 1
- 206010060862 Prostate cancer Diseases 0.000 description 1
- 208000000236 Prostatic Neoplasms Diseases 0.000 description 1
- 102100040638 Protein AF-17 Human genes 0.000 description 1
- 102100025198 Protein DBF4 homolog A Human genes 0.000 description 1
- 102100027171 Protein SET Human genes 0.000 description 1
- 101710148582 Protein SET Proteins 0.000 description 1
- 108090000412 Protein-Tyrosine Kinases Proteins 0.000 description 1
- 102000004022 Protein-Tyrosine Kinases Human genes 0.000 description 1
- 102100034145 Putative POU domain, class 5, transcription factor 1B Human genes 0.000 description 1
- 102100021168 Putative double homeobox protein 3 Human genes 0.000 description 1
- LCTONWCANYUPML-UHFFFAOYSA-M Pyruvate Chemical compound CC(=O)C([O-])=O LCTONWCANYUPML-UHFFFAOYSA-M 0.000 description 1
- 108020005115 Pyruvate Kinase Proteins 0.000 description 1
- 102000013009 Pyruvate Kinase Human genes 0.000 description 1
- 108091008730 RAR-related orphan receptors β Proteins 0.000 description 1
- 108091008773 RAR-related orphan receptors γ Proteins 0.000 description 1
- 108091008103 RNA aptamers Proteins 0.000 description 1
- 102100023544 Ras-responsive element-binding protein 1 Human genes 0.000 description 1
- 101710132554 Ras-responsive element-binding protein 1 Proteins 0.000 description 1
- 101100065098 Rattus norvegicus Egr4 gene Proteins 0.000 description 1
- 101100016889 Rattus norvegicus Hes2 gene Proteins 0.000 description 1
- 101100247004 Rattus norvegicus Qsox1 gene Proteins 0.000 description 1
- 101100533701 Rattus norvegicus Smad1 gene Proteins 0.000 description 1
- 101100480477 Rattus norvegicus Taar7d gene Proteins 0.000 description 1
- 101100431670 Rattus norvegicus Ybx3 gene Proteins 0.000 description 1
- 101710138742 Receptor-type tyrosine-protein phosphatase H Proteins 0.000 description 1
- 108700025701 Retinoblastoma Genes Proteins 0.000 description 1
- 102100034262 Retinoic acid receptor RXR-gamma Human genes 0.000 description 1
- 108091008770 Rev-ErbAß Proteins 0.000 description 1
- 102100030676 Rho GTPase-activating protein 35 Human genes 0.000 description 1
- 102100030748 Rho GTPase-activating protein 39 Human genes 0.000 description 1
- 102100030757 Rho GTPase-activating protein 42 Human genes 0.000 description 1
- 108091078243 Rho family Proteins 0.000 description 1
- 102000042463 Rho family Human genes 0.000 description 1
- 108010041388 Ribonucleotide Reductases Proteins 0.000 description 1
- 102000000505 Ribonucleotide Reductases Human genes 0.000 description 1
- PYMYPHUHKUWMLA-LMVFSUKVSA-N Ribose Natural products OC[C@@H](O)[C@@H](O)[C@@H](O)C=O PYMYPHUHKUWMLA-LMVFSUKVSA-N 0.000 description 1
- 108010039491 Ricin Proteins 0.000 description 1
- 102100025368 Runt-related transcription factor 2 Human genes 0.000 description 1
- 102100025369 Runt-related transcription factor 3 Human genes 0.000 description 1
- 102100027160 RuvB-like 1 Human genes 0.000 description 1
- 230000018199 S phase Effects 0.000 description 1
- 102100034018 SAM pointed domain-containing Ets transcription factor Human genes 0.000 description 1
- 108091006629 SLC13A2 Proteins 0.000 description 1
- 101700026522 SMAD7 Proteins 0.000 description 1
- 101700031501 SMAD9 Proteins 0.000 description 1
- 101150073471 SOX14 gene Proteins 0.000 description 1
- 101150106167 SOX9 gene Proteins 0.000 description 1
- 101150097243 SPT16 gene Proteins 0.000 description 1
- 102000004265 STAT2 Transcription Factor Human genes 0.000 description 1
- 108010081691 STAT2 Transcription Factor Proteins 0.000 description 1
- 101150058731 STAT5A gene Proteins 0.000 description 1
- 102000013968 STAT6 Transcription Factor Human genes 0.000 description 1
- 108010011005 STAT6 Transcription Factor Proteins 0.000 description 1
- 102100024793 SWI/SNF complex subunit SMARCC1 Human genes 0.000 description 1
- 101710169053 SWI/SNF complex subunit SMARCC1 Proteins 0.000 description 1
- 102100025746 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 Human genes 0.000 description 1
- 101710199691 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 Proteins 0.000 description 1
- 102100024777 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1 Human genes 0.000 description 1
- 101710188233 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1 Proteins 0.000 description 1
- 101100333774 Saccharomyces cerevisiae (strain ATCC 204508 / S288c) ERR3 gene Proteins 0.000 description 1
- 101100122755 Saccharomyces cerevisiae (strain ATCC 204508 / S288c) NPA3 gene Proteins 0.000 description 1
- 101100528938 Schizosaccharomyces pombe (strain 972 / ATCC 24843) ker1 gene Proteins 0.000 description 1
- MTCFGRXMJLQNBG-UHFFFAOYSA-N Serine Natural products OCC(N)C(O)=O MTCFGRXMJLQNBG-UHFFFAOYSA-N 0.000 description 1
- 102100028904 Serine/threonine-protein kinase MARK2 Human genes 0.000 description 1
- 108010034546 Serratia marcescens nuclease Proteins 0.000 description 1
- 102100024481 Signal transducer and activator of transcription 5A Human genes 0.000 description 1
- 241000700584 Simplexvirus Species 0.000 description 1
- 102100024451 Ski-like protein Human genes 0.000 description 1
- 102000049870 Smad8 Human genes 0.000 description 1
- 101150117830 Sox5 gene Proteins 0.000 description 1
- 108010019965 Spectrin Proteins 0.000 description 1
- 102000005890 Spectrin Human genes 0.000 description 1
- 108010071698 Spermine synthase Proteins 0.000 description 1
- 102100037616 Spermine synthase Human genes 0.000 description 1
- 102000005782 Squalene Monooxygenase Human genes 0.000 description 1
- 108020003891 Squalene monooxygenase Proteins 0.000 description 1
- 229920002472 Starch Polymers 0.000 description 1
- 102100036831 Steroid hormone receptor ERR2 Human genes 0.000 description 1
- 229930182558 Sterol Natural products 0.000 description 1
- 108010055297 Sterol Esterase Proteins 0.000 description 1
- 108010074436 Sterol Regulatory Element Binding Protein 1 Proteins 0.000 description 1
- 108010074438 Sterol Regulatory Element Binding Protein 2 Proteins 0.000 description 1
- 102100026839 Sterol regulatory element-binding protein 1 Human genes 0.000 description 1
- 102100026841 Sterol regulatory element-binding protein 2 Human genes 0.000 description 1
- 238000000692 Student's t-test Methods 0.000 description 1
- 102000011929 Succinate-CoA Ligases Human genes 0.000 description 1
- 108010075728 Succinate-CoA Ligases Proteins 0.000 description 1
- 102000019197 Superoxide Dismutase Human genes 0.000 description 1
- 108010012715 Superoxide dismutase Proteins 0.000 description 1
- 108700025695 Suppressor Genes Proteins 0.000 description 1
- 108010029625 T-Box Domain Protein 2 Proteins 0.000 description 1
- 102100036771 T-box transcription factor TBX1 Human genes 0.000 description 1
- 102100029848 T-box transcription factor TBX18 Human genes 0.000 description 1
- 102100036773 T-box transcription factor TBX19 Human genes 0.000 description 1
- 102100038721 T-box transcription factor TBX2 Human genes 0.000 description 1
- 102100036840 T-box transcription factor TBX21 Human genes 0.000 description 1
- 102100024754 T-box transcription factor TBX4 Human genes 0.000 description 1
- 102100024751 T-box transcription factor TBX6 Human genes 0.000 description 1
- 102100032568 T-cell leukemia homeobox protein 3 Human genes 0.000 description 1
- 102100035207 TATA box-binding protein-associated factor RNA polymerase I subunit D Human genes 0.000 description 1
- 108010030965 Tartrate dehydrogenase Proteins 0.000 description 1
- 102100036407 Thioredoxin Human genes 0.000 description 1
- 108060008245 Thrombospondin Proteins 0.000 description 1
- 102000002938 Thrombospondin Human genes 0.000 description 1
- 102000005497 Thymidylate Synthase Human genes 0.000 description 1
- 101001023030 Toxoplasma gondii Myosin-D Proteins 0.000 description 1
- 102100040396 Transcobalamin-1 Human genes 0.000 description 1
- 101710124861 Transcobalamin-1 Proteins 0.000 description 1
- 102100031027 Transcription activator BRG1 Human genes 0.000 description 1
- 102100038997 Transcription elongation factor SPT4 Human genes 0.000 description 1
- 102100033121 Transcription factor 21 Human genes 0.000 description 1
- 101710119687 Transcription factor 21 Proteins 0.000 description 1
- 108050005285 Transcription factor 7-like 1 Proteins 0.000 description 1
- 102100026155 Transcription factor A, mitochondrial Human genes 0.000 description 1
- 101710106416 Transcription factor A, mitochondrial Proteins 0.000 description 1
- 102100032866 Transcription factor CP2-like protein 1 Human genes 0.000 description 1
- 102100038313 Transcription factor E2-alpha Human genes 0.000 description 1
- 102100028507 Transcription factor E3 Human genes 0.000 description 1
- 102100030798 Transcription factor HES-1 Human genes 0.000 description 1
- 102100028438 Transcription factor HIVEP2 Human genes 0.000 description 1
- 102100028336 Transcription factor HIVEP3 Human genes 0.000 description 1
- 101710177551 Transcription factor HIVEP3 Proteins 0.000 description 1
- 102100035412 Transcription factor NF-E2 45 kDa subunit Human genes 0.000 description 1
- 102100027654 Transcription factor PU.1 Human genes 0.000 description 1
- 102100020984 Transcription factor RFX4 Human genes 0.000 description 1
- 102100028604 Transcription initiation factor IIA subunit 2 Human genes 0.000 description 1
- 101710145409 Transcription initiation factor IIA subunit 2 Proteins 0.000 description 1
- 102100030833 Transcription initiation factor TFIID subunit 4 Human genes 0.000 description 1
- 102100034748 Transcription initiation factor TFIID subunit 7 Human genes 0.000 description 1
- 101710104820 Transcription initiation factor TFIID subunit 7 Proteins 0.000 description 1
- 102100022011 Transcription intermediary factor 1-alpha Human genes 0.000 description 1
- 102100034549 Transcriptional activator protein Pur-beta Human genes 0.000 description 1
- 102100030836 Transcriptional adapter 3 Human genes 0.000 description 1
- 102100029898 Transcriptional enhancer factor TEF-1 Human genes 0.000 description 1
- 102100035147 Transcriptional enhancer factor TEF-5 Human genes 0.000 description 1
- 102100027671 Transcriptional repressor CTCF Human genes 0.000 description 1
- 102100032762 Transformation/transcription domain-associated protein Human genes 0.000 description 1
- 102100027172 Transposon Hsmar1 transposase Human genes 0.000 description 1
- 102000005924 Triose-Phosphate Isomerase Human genes 0.000 description 1
- 108700015934 Triose-phosphate isomerases Proteins 0.000 description 1
- 102000005937 Tropomyosin Human genes 0.000 description 1
- 108010030743 Tropomyosin Proteins 0.000 description 1
- 108010075344 Tryptophan synthase Proteins 0.000 description 1
- 208000035896 Twin-reversed arterial perfusion sequence Diseases 0.000 description 1
- 108010079194 Type C Phospholipases Proteins 0.000 description 1
- 102100021575 Tyrosine-protein kinase BAZ1B Human genes 0.000 description 1
- 108010065282 UDP xylose-protein xylosyltransferase Proteins 0.000 description 1
- 102100040105 Upstream stimulatory factor 1 Human genes 0.000 description 1
- 102100040103 Upstream stimulatory factor 2 Human genes 0.000 description 1
- DJJCXFVJDGTHFX-UHFFFAOYSA-N Uridinemonophosphate Natural products OC1C(O)C(COP(O)(O)=O)OC1N1C(=O)NC(=O)C=C1 DJJCXFVJDGTHFX-UHFFFAOYSA-N 0.000 description 1
- 241000700618 Vaccinia virus Species 0.000 description 1
- 108020005202 Viral DNA Proteins 0.000 description 1
- 108010035430 X-Box Binding Protein 1 Proteins 0.000 description 1
- 102100038151 X-box-binding protein 1 Human genes 0.000 description 1
- 102100036973 X-ray repair cross-complementing protein 5 Human genes 0.000 description 1
- 101710124921 X-ray repair cross-complementing protein 5 Proteins 0.000 description 1
- 102100036976 X-ray repair cross-complementing protein 6 Human genes 0.000 description 1
- 101710124907 X-ray repair cross-complementing protein 6 Proteins 0.000 description 1
- 101001057161 Xenopus laevis MDS1 and EVI1 complex locus protein EVI1-A Proteins 0.000 description 1
- 101100405120 Xenopus laevis nr4a1 gene Proteins 0.000 description 1
- 101100351021 Xenopus laevis pax5 gene Proteins 0.000 description 1
- 102000010199 Xylosyltransferases Human genes 0.000 description 1
- 108010088665 Zinc Finger Protein Gli2 Proteins 0.000 description 1
- 102100040314 Zinc finger and BTB domain-containing protein 16 Human genes 0.000 description 1
- 102100021129 Zinc finger and BTB domain-containing protein 24 Human genes 0.000 description 1
- 101710096165 Zinc finger and BTB domain-containing protein 24 Proteins 0.000 description 1
- 102100026583 Zinc finger and SCAN domain-containing protein 26 Human genes 0.000 description 1
- 102100023573 Zinc finger protein 124 Human genes 0.000 description 1
- 102100023389 Zinc finger protein 143 Human genes 0.000 description 1
- 102100024672 Zinc finger protein 35 Human genes 0.000 description 1
- 102100040733 Zinc finger protein 395 Human genes 0.000 description 1
- 102100040827 Zinc finger protein 398 Human genes 0.000 description 1
- 102100035868 Zinc finger protein 444 Human genes 0.000 description 1
- 102100040726 Zinc finger protein 7 Human genes 0.000 description 1
- 102100040710 Zinc finger protein 76 Human genes 0.000 description 1
- 102100039050 Zinc finger protein 85 Human genes 0.000 description 1
- 102100035558 Zinc finger protein GLI2 Human genes 0.000 description 1
- 102100025884 Zinc finger protein GLIS2 Human genes 0.000 description 1
- 102100032571 Zinc finger protein PLAGL2 Human genes 0.000 description 1
- INAPMGSXUVUWAF-GCVPSNMTSA-N [(2r,3s,5r,6r)-2,3,4,5,6-pentahydroxycyclohexyl] dihydrogen phosphate Chemical compound OC1[C@H](O)[C@@H](O)C(OP(O)(O)=O)[C@H](O)[C@@H]1O INAPMGSXUVUWAF-GCVPSNMTSA-N 0.000 description 1
- POOGXHSMLJDKRF-SOOFDHNKSA-N [(3R,4R,5R)-4-hydroxy-5-(hydroxymethyl)-2-phosphonooxyoxolan-3-yl] dihydrogen phosphate Chemical compound OC[C@H]1OC(OP(O)(O)=O)[C@H](OP(O)(O)=O)[C@@H]1O POOGXHSMLJDKRF-SOOFDHNKSA-N 0.000 description 1
- 230000002159 abnormal effect Effects 0.000 description 1
- 238000009825 accumulation Methods 0.000 description 1
- 125000002777 acetyl group Chemical group [H]C([H])([H])C(*)=O 0.000 description 1
- OIPILFWXSMYKGL-UHFFFAOYSA-N acetylcholine Chemical compound CC(=O)OCC[N+](C)(C)C OIPILFWXSMYKGL-UHFFFAOYSA-N 0.000 description 1
- 229960004373 acetylcholine Drugs 0.000 description 1
- 230000004913 activation Effects 0.000 description 1
- 229960005305 adenosine Drugs 0.000 description 1
- OFBHPPMPBOJXRT-VWJPMABRSA-N adenylosuccinic acid Chemical compound O[C@@H]1[C@H](O)[C@@H](COP(O)(O)=O)O[C@H]1N1C2=NC=NC(N[C@@H](CC(O)=O)C(O)=O)=C2N=C1 OFBHPPMPBOJXRT-VWJPMABRSA-N 0.000 description 1
- 210000001789 adipocyte Anatomy 0.000 description 1
- 239000000443 aerosol Substances 0.000 description 1
- 230000002776 aggregation Effects 0.000 description 1
- 238000004220 aggregation Methods 0.000 description 1
- HMFHBZSHGGEWLO-UHFFFAOYSA-N alpha-D-Furanose-Ribose Natural products OCC1OC(O)C(O)C1O HMFHBZSHGGEWLO-UHFFFAOYSA-N 0.000 description 1
- 125000003277 amino group Chemical group 0.000 description 1
- MDFFNEOEWAXZRQ-UHFFFAOYSA-N aminyl Chemical compound [NH2] MDFFNEOEWAXZRQ-UHFFFAOYSA-N 0.000 description 1
- DZHSAHHDTRWUTF-SIQRNXPUSA-N amyloid-beta polypeptide 42 Chemical compound C([C@@H](C(=O)N[C@@H](C)C(=O)N[C@@H](CCC(O)=O)C(=O)N[C@@H](CC(O)=O)C(=O)N[C@H](C(=O)NCC(=O)N[C@@H](CO)C(=O)N[C@@H](CC(N)=O)C(=O)N[C@@H](CCCCN)C(=O)NCC(=O)N[C@@H](C)C(=O)N[C@H](C(=O)N[C@@H]([C@@H](C)CC)C(=O)NCC(=O)N[C@@H](CC(C)C)C(=O)N[C@@H](CCSC)C(=O)N[C@@H](C(C)C)C(=O)NCC(=O)NCC(=O)N[C@@H](C(C)C)C(=O)N[C@@H](C(C)C)C(=O)N[C@@H]([C@@H](C)CC)C(=O)N[C@@H](C)C(O)=O)[C@@H](C)CC)C(C)C)NC(=O)[C@H](CC=1C=CC=CC=1)NC(=O)[C@@H](NC(=O)[C@H](CC(C)C)NC(=O)[C@H](CCCCN)NC(=O)[C@H](CCC(N)=O)NC(=O)[C@H](CC=1N=CNC=1)NC(=O)[C@H](CC=1N=CNC=1)NC(=O)[C@@H](NC(=O)[C@H](CCC(O)=O)NC(=O)[C@H](CC=1C=CC(O)=CC=1)NC(=O)CNC(=O)[C@H](CO)NC(=O)[C@H](CC(O)=O)NC(=O)[C@H](CC=1N=CNC=1)NC(=O)[C@H](CCCNC(N)=N)NC(=O)[C@H](CC=1C=CC=CC=1)NC(=O)[C@H](CCC(O)=O)NC(=O)[C@H](C)NC(=O)[C@@H](N)CC(O)=O)C(C)C)C(C)C)C1=CC=CC=C1 DZHSAHHDTRWUTF-SIQRNXPUSA-N 0.000 description 1
- 230000033115 angiogenesis Effects 0.000 description 1
- 239000002870 angiogenesis inducing agent Substances 0.000 description 1
- 239000004037 angiogenesis inhibitor Substances 0.000 description 1
- 229940121369 angiogenesis inhibitor Drugs 0.000 description 1
- 150000001450 anions Chemical class 0.000 description 1
- 230000000840 anti-viral effect Effects 0.000 description 1
- 239000000074 antisense oligonucleotide Substances 0.000 description 1
- 238000012230 antisense oligonucleotides Methods 0.000 description 1
- 230000001640 apoptogenic effect Effects 0.000 description 1
- 239000007864 aqueous solution Substances 0.000 description 1
- KDZOASGQNOPSCU-UHFFFAOYSA-N argininosuccinate Chemical compound OC(=O)C(N)CCCN=C(N)NC(C(O)=O)CC(O)=O KDZOASGQNOPSCU-UHFFFAOYSA-N 0.000 description 1
- 101150024767 arnT gene Proteins 0.000 description 1
- 238000003491 array Methods 0.000 description 1
- 206010064097 avian influenza Diseases 0.000 description 1
- SIKJAQJRHWYJAI-UHFFFAOYSA-N benzopyrrole Natural products C1=CC=C2NC=CC2=C1 SIKJAQJRHWYJAI-UHFFFAOYSA-N 0.000 description 1
- 229920002988 biodegradable polymer Polymers 0.000 description 1
- 239000004621 biodegradable polymer Substances 0.000 description 1
- 239000012472 biological sample Substances 0.000 description 1
- 238000001574 biopsy Methods 0.000 description 1
- 210000004556 brain Anatomy 0.000 description 1
- BBBFJLBPOGFECG-VJVYQDLKSA-N calcitonin Chemical compound N([C@H](C(=O)N[C@@H](CC(C)C)C(=O)NCC(=O)N[C@@H](CCCCN)C(=O)N[C@@H](CC(C)C)C(=O)N[C@@H](CO)C(=O)N[C@@H](CCC(N)=O)C(=O)N[C@@H](CCC(O)=O)C(=O)N[C@@H](CC(C)C)C(=O)N[C@@H](CC=1NC=NC=1)C(=O)N[C@@H](CCCCN)C(=O)N[C@@H](CC(C)C)C(=O)N[C@@H](CCC(N)=O)C(=O)N[C@@H]([C@@H](C)O)C(=O)N[C@@H](CC=1C=CC(O)=CC=1)C(=O)N1[C@@H](CCC1)C(=O)N[C@@H](CCCNC(N)=N)C(=O)N[C@@H]([C@@H](C)O)C(=O)N[C@@H](CC(N)=O)C(=O)N[C@@H]([C@@H](C)O)C(=O)NCC(=O)N[C@@H](CO)C(=O)NCC(=O)N[C@@H]([C@@H](C)O)C(=O)N1[C@@H](CCC1)C(N)=O)C(C)C)C(=O)[C@@H]1CSSC[C@H](N)C(=O)N[C@@H](CO)C(=O)N[C@@H](CC(N)=O)C(=O)N[C@@H](CC(C)C)C(=O)N[C@@H](CO)C(=O)N[C@@H]([C@@H](C)O)C(=O)N1 BBBFJLBPOGFECG-VJVYQDLKSA-N 0.000 description 1
- 229960004015 calcitonin Drugs 0.000 description 1
- 229910052791 calcium Inorganic materials 0.000 description 1
- 238000004364 calculation method Methods 0.000 description 1
- 244000309466 calf Species 0.000 description 1
- 210000000234 capsid Anatomy 0.000 description 1
- FFQKYPRQEYGKAF-UHFFFAOYSA-N carbamoyl phosphate Chemical compound NC(=O)OP(O)(O)=O FFQKYPRQEYGKAF-UHFFFAOYSA-N 0.000 description 1
- 239000000969 carrier Substances 0.000 description 1
- 230000003197 catalytic effect Effects 0.000 description 1
- 150000001768 cations Chemical class 0.000 description 1
- 230000001364 causal effect Effects 0.000 description 1
- 101150069072 cdc25 gene Proteins 0.000 description 1
- 101150073031 cdk2 gene Proteins 0.000 description 1
- 230000021164 cell adhesion Effects 0.000 description 1
- 230000006369 cell cycle progression Effects 0.000 description 1
- 230000024245 cell differentiation Effects 0.000 description 1
- 230000032823 cell division Effects 0.000 description 1
- 230000004709 cell invasion Effects 0.000 description 1
- 230000009087 cell motility Effects 0.000 description 1
- 230000004663 cell proliferation Effects 0.000 description 1
- 230000007248 cellular mechanism Effects 0.000 description 1
- 230000019522 cellular metabolic process Effects 0.000 description 1
- 230000036755 cellular response Effects 0.000 description 1
- 230000005754 cellular signaling Effects 0.000 description 1
- 230000004700 cellular uptake Effects 0.000 description 1
- 238000005119 centrifugation Methods 0.000 description 1
- 210000003756 cervix mucus Anatomy 0.000 description 1
- 238000012512 characterization method Methods 0.000 description 1
- 125000003636 chemical group Chemical group 0.000 description 1
- 210000003483 chromatin Anatomy 0.000 description 1
- 230000010428 chromatin condensation Effects 0.000 description 1
- 229930193282 clathrin Natural products 0.000 description 1
- 238000010367 cloning Methods 0.000 description 1
- 229920001436 collagen Polymers 0.000 description 1
- 229960002424 collagenase Drugs 0.000 description 1
- 201000010989 colorectal carcinoma Diseases 0.000 description 1
- 238000012875 competitive assay Methods 0.000 description 1
- 239000002299 complementary DNA Substances 0.000 description 1
- 230000009918 complex formation Effects 0.000 description 1
- 238000004590 computer program Methods 0.000 description 1
- 239000012468 concentrated sample Substances 0.000 description 1
- 238000010276 construction Methods 0.000 description 1
- 238000013270 controlled release Methods 0.000 description 1
- 230000002596 correlated effect Effects 0.000 description 1
- 229960004544 cortisone Drugs 0.000 description 1
- 101150089047 cutA gene Proteins 0.000 description 1
- IERHLVCPSMICTF-XVFCMESISA-N cytidine 5'-monophosphate Chemical compound O=C1N=C(N)C=CN1[C@H]1[C@H](O)[C@H](O)[C@@H](COP(O)(O)=O)O1 IERHLVCPSMICTF-XVFCMESISA-N 0.000 description 1
- 230000002559 cytogenic effect Effects 0.000 description 1
- 229940104302 cytosine Drugs 0.000 description 1
- 210000004292 cytoskeleton Anatomy 0.000 description 1
- 230000001086 cytosolic effect Effects 0.000 description 1
- 230000001085 cytostatic effect Effects 0.000 description 1
- 231100000433 cytotoxic Toxicity 0.000 description 1
- 230000001472 cytotoxic effect Effects 0.000 description 1
- 231100000135 cytotoxicity Toxicity 0.000 description 1
- 230000006378 damage Effects 0.000 description 1
- 230000034994 death Effects 0.000 description 1
- 230000007423 decrease Effects 0.000 description 1
- 230000003111 delayed effect Effects 0.000 description 1
- 239000005547 deoxyribonucleotide Substances 0.000 description 1
- 125000002637 deoxyribonucleotide group Chemical group 0.000 description 1
- 206010012601 diabetes mellitus Diseases 0.000 description 1
- 150000001982 diacylglycerols Chemical class 0.000 description 1
- 235000005911 diet Nutrition 0.000 description 1
- 230000037213 diet Effects 0.000 description 1
- 235000014113 dietary fatty acids Nutrition 0.000 description 1
- MTHSVFCYNBDYFN-UHFFFAOYSA-N diethylene glycol Chemical compound OCCOCCO MTHSVFCYNBDYFN-UHFFFAOYSA-N 0.000 description 1
- 230000004069 differentiation Effects 0.000 description 1
- 102000004419 dihydrofolate reductase Human genes 0.000 description 1
- UFIVEPVSAGBUSI-UHFFFAOYSA-N dihydroorotic acid Chemical compound OC(=O)C1CC(=O)NC(=O)N1 UFIVEPVSAGBUSI-UHFFFAOYSA-N 0.000 description 1
- 239000001177 diphosphate Substances 0.000 description 1
- 229940042399 direct acting antivirals protease inhibitors Drugs 0.000 description 1
- 229910000397 disodium phosphate Inorganic materials 0.000 description 1
- 229960003638 dopamine Drugs 0.000 description 1
- 238000012377 drug delivery Methods 0.000 description 1
- 238000009509 drug development Methods 0.000 description 1
- 238000007876 drug discovery Methods 0.000 description 1
- 230000002900 effect on cell Effects 0.000 description 1
- 229920002549 elastin Polymers 0.000 description 1
- 230000005684 electric field Effects 0.000 description 1
- 230000009881 electrostatic interaction Effects 0.000 description 1
- 239000012149 elution buffer Substances 0.000 description 1
- 210000004696 endometrium Anatomy 0.000 description 1
- 230000003511 endothelial effect Effects 0.000 description 1
- 230000002708 enhancing effect Effects 0.000 description 1
- 108010089558 erythroid Kruppel-like factor Proteins 0.000 description 1
- 238000012869 ethanol precipitation Methods 0.000 description 1
- 238000011156 evaluation Methods 0.000 description 1
- 208000021045 exocrine pancreatic carcinoma Diseases 0.000 description 1
- 238000000605 extraction Methods 0.000 description 1
- 239000011536 extraction buffer Substances 0.000 description 1
- 229930195729 fatty acid Natural products 0.000 description 1
- 239000000194 fatty acid Substances 0.000 description 1
- 229940126864 fibroblast growth factor Drugs 0.000 description 1
- 239000012530 fluid Substances 0.000 description 1
- 239000007850 fluorescent dye Substances 0.000 description 1
- 238000001215 fluorescent labelling Methods 0.000 description 1
- 125000001153 fluoro group Chemical group F* 0.000 description 1
- 101150064107 fosB gene Proteins 0.000 description 1
- 238000004108 freeze drying Methods 0.000 description 1
- 125000000524 functional group Chemical group 0.000 description 1
- 230000002538 fungal effect Effects 0.000 description 1
- 230000004927 fusion Effects 0.000 description 1
- 239000008273 gelatin Substances 0.000 description 1
- 229920000159 gelatin Polymers 0.000 description 1
- 235000019322 gelatine Nutrition 0.000 description 1
- 235000011852 gelatine desserts Nutrition 0.000 description 1
- 230000008303 genetic mechanism Effects 0.000 description 1
- 150000002305 glucosylceramides Chemical class 0.000 description 1
- 125000000404 glutamine group Chemical group N[C@@H](CCC(N)=O)C(=O)* 0.000 description 1
- BEBCJVAWIBVWNZ-UHFFFAOYSA-N glycinamide Chemical compound NCC(N)=O BEBCJVAWIBVWNZ-UHFFFAOYSA-N 0.000 description 1
- 229940096919 glycogen Drugs 0.000 description 1
- 208000037824 growth disorder Diseases 0.000 description 1
- 239000003630 growth substance Substances 0.000 description 1
- 101150008103 hal gene Proteins 0.000 description 1
- 210000002216 heart Anatomy 0.000 description 1
- 238000010438 heat treatment Methods 0.000 description 1
- 208000002672 hepatitis B Diseases 0.000 description 1
- 235000014304 histidine Nutrition 0.000 description 1
- 108010021685 homeobox protein HOXA13 Proteins 0.000 description 1
- 102000051196 human CFAP410 Human genes 0.000 description 1
- 102000056688 human ENTR1 Human genes 0.000 description 1
- 102000051789 human HMGA2 Human genes 0.000 description 1
- 102000049285 human KMT2A Human genes 0.000 description 1
- 102000056573 human MYB Human genes 0.000 description 1
- 102000048577 human RAD51B Human genes 0.000 description 1
- 102000051381 human SLC4A2 Human genes 0.000 description 1
- 102000054983 human ZBTB24 Human genes 0.000 description 1
- 210000005260 human cell Anatomy 0.000 description 1
- 125000004435 hydrogen atom Chemical group [H]* 0.000 description 1
- 125000002887 hydroxy group Chemical group [H]O* 0.000 description 1
- 238000009802 hysterectomy Methods 0.000 description 1
- 230000028993 immune response Effects 0.000 description 1
- 230000002163 immunogen Effects 0.000 description 1
- 230000001976 improved effect Effects 0.000 description 1
- PZOUSPYUWWUPPK-UHFFFAOYSA-N indole Natural products CC1=CC=CC2=C1C=CN2 PZOUSPYUWWUPPK-UHFFFAOYSA-N 0.000 description 1
- RKJUIXBNRJVNHR-UHFFFAOYSA-N indolenine Natural products C1=CC=C2CC=NC2=C1 RKJUIXBNRJVNHR-UHFFFAOYSA-N 0.000 description 1
- 230000006882 induction of apoptosis Effects 0.000 description 1
- 230000001939 inductive effect Effects 0.000 description 1
- 230000007574 infarction Effects 0.000 description 1
- 230000008595 infiltration Effects 0.000 description 1
- 238000001764 infiltration Methods 0.000 description 1
- 230000004054 inflammatory process Effects 0.000 description 1
- 230000002401 inhibitory effect Effects 0.000 description 1
- 230000010354 integration Effects 0.000 description 1
- 230000008611 intercellular interaction Effects 0.000 description 1
- 238000001990 intravenous administration Methods 0.000 description 1
- 238000010253 intravenous injection Methods 0.000 description 1
- 230000009545 invasion Effects 0.000 description 1
- 150000002500 ions Chemical class 0.000 description 1
- CSSYQJWUGATIHM-IKGCZBKSSA-N l-phenylalanyl-l-lysyl-l-cysteinyl-l-arginyl-l-arginyl-l-tryptophyl-l-glutaminyl-l-tryptophyl-l-arginyl-l-methionyl-l-lysyl-l-lysyl-l-leucylglycyl-l-alanyl-l-prolyl-l-seryl-l-isoleucyl-l-threonyl-l-cysteinyl-l-valyl-l-arginyl-l-arginyl-l-alanyl-l-phenylal Chemical compound C([C@H](N)C(=O)N[C@@H](CCCCN)C(=O)N[C@@H](CS)C(=O)N[C@@H](CCCNC(N)=N)C(=O)N[C@@H](CCCNC(N)=N)C(=O)N[C@@H](CC=1C2=CC=CC=C2NC=1)C(=O)N[C@@H](CCC(N)=O)C(=O)N[C@@H](CC=1C2=CC=CC=C2NC=1)C(=O)N[C@@H](CCCNC(N)=N)C(=O)N[C@@H](CCSC)C(=O)N[C@@H](CCCCN)C(=O)N[C@@H](CCCCN)C(=O)N[C@@H](CC(C)C)C(=O)NCC(=O)N[C@@H](C)C(=O)N1CCC[C@H]1C(=O)N[C@@H](CO)C(=O)N[C@@H]([C@@H](C)CC)C(=O)N[C@@H]([C@@H](C)O)C(=O)N[C@@H](CS)C(=O)N[C@@H](C(C)C)C(=O)N[C@@H](CCCNC(N)=N)C(=O)N[C@@H](CCCNC(N)=N)C(=O)N[C@@H](C)C(=O)N[C@@H](CC=1C=CC=CC=1)C(O)=O)C1=CC=CC=C1 CSSYQJWUGATIHM-IKGCZBKSSA-N 0.000 description 1
- 238000002372 labelling Methods 0.000 description 1
- 229940078795 lactoferrin Drugs 0.000 description 1
- 235000021242 lactoferrin Nutrition 0.000 description 1
- 230000003902 lesion Effects 0.000 description 1
- 201000005296 lung carcinoma Diseases 0.000 description 1
- 210000004880 lymph fluid Anatomy 0.000 description 1
- 235000010335 lysozyme Nutrition 0.000 description 1
- 229960000274 lysozyme Drugs 0.000 description 1
- 239000004325 lysozyme Substances 0.000 description 1
- 102100035856 mRNA-decapping enzyme 1A Human genes 0.000 description 1
- 229920002521 macromolecule Polymers 0.000 description 1
- 229910052749 magnesium Inorganic materials 0.000 description 1
- 230000036212 malign transformation Effects 0.000 description 1
- 208000015486 malignant pancreatic neoplasm Diseases 0.000 description 1
- 239000011159 matrix material Substances 0.000 description 1
- 239000002609 medium Substances 0.000 description 1
- 201000001441 melanoma Diseases 0.000 description 1
- 101150029117 meox2 gene Proteins 0.000 description 1
- MYWUZJCMWCOHBA-VIFPVBQESA-N methamphetamine Chemical compound CN[C@@H](C)CC1=CC=CC=C1 MYWUZJCMWCOHBA-VIFPVBQESA-N 0.000 description 1
- 239000004005 microsphere Substances 0.000 description 1
- 230000005012 migration Effects 0.000 description 1
- 238000013508 migration Methods 0.000 description 1
- 210000003470 mitochondria Anatomy 0.000 description 1
- 230000002438 mitochondrial effect Effects 0.000 description 1
- 238000002156 mixing Methods 0.000 description 1
- 102000035118 modified proteins Human genes 0.000 description 1
- 108091005573 modified proteins Proteins 0.000 description 1
- 230000004899 motility Effects 0.000 description 1
- 101150094258 mxi1 gene Proteins 0.000 description 1
- 208000025113 myeloid leukemia Diseases 0.000 description 1
- 108010084677 myogenic factor 6 Proteins 0.000 description 1
- UPSFMJHZUCSEHU-JYGUBCOQSA-N n-[(2s,3r,4r,5s,6r)-2-[(2r,3s,4r,5r,6s)-5-acetamido-4-hydroxy-2-(hydroxymethyl)-6-(4-methyl-2-oxochromen-7-yl)oxyoxan-3-yl]oxy-4,5-dihydroxy-6-(hydroxymethyl)oxan-3-yl]acetamide Chemical compound CC(=O)N[C@@H]1[C@@H](O)[C@H](O)[C@@H](CO)O[C@H]1O[C@H]1[C@H](O)[C@@H](NC(C)=O)[C@H](OC=2C=C3OC(=O)C=C(C)C3=CC=2)O[C@@H]1CO UPSFMJHZUCSEHU-JYGUBCOQSA-N 0.000 description 1
- MRWXACSTFXYYMV-FDDDBJFASA-N nebularine Chemical compound O[C@@H]1[C@H](O)[C@@H](CO)O[C@H]1N1C2=NC=NC=C2N=C1 MRWXACSTFXYYMV-FDDDBJFASA-N 0.000 description 1
- 230000001338 necrotic effect Effects 0.000 description 1
- 230000009826 neoplastic cell growth Effects 0.000 description 1
- 229920001220 nitrocellulos Polymers 0.000 description 1
- 230000009871 nonspecific binding Effects 0.000 description 1
- 231100000252 nontoxic Toxicity 0.000 description 1
- 230000003000 nontoxic effect Effects 0.000 description 1
- 108010010765 nuclear factor-jun Proteins 0.000 description 1
- 239000002777 nucleoside Substances 0.000 description 1
- 229920001542 oligosaccharide Polymers 0.000 description 1
- 231100000590 oncogenic Toxicity 0.000 description 1
- 230000002246 oncogenic effect Effects 0.000 description 1
- 229960003104 ornithine Drugs 0.000 description 1
- 201000008968 osteosarcoma Diseases 0.000 description 1
- 201000002528 pancreatic cancer Diseases 0.000 description 1
- 208000003154 papilloma Diseases 0.000 description 1
- 229920002866 paraformaldehyde Polymers 0.000 description 1
- 230000009057 passive transport Effects 0.000 description 1
- 230000007918 pathogenicity Effects 0.000 description 1
- 230000009589 pathological growth Effects 0.000 description 1
- 101150098999 pax8 gene Proteins 0.000 description 1
- 239000000137 peptide hydrolase inhibitor Substances 0.000 description 1
- 125000001151 peptidyl group Chemical group 0.000 description 1
- 230000035699 permeability Effects 0.000 description 1
- 108091008725 peroxisome proliferator-activated receptors alpha Proteins 0.000 description 1
- 108091008765 peroxisome proliferator-activated receptors β/δ Proteins 0.000 description 1
- 108010078226 phenylalanine oxidase Proteins 0.000 description 1
- 150000008104 phosphatidylethanolamines Chemical class 0.000 description 1
- 150000004713 phosphodiesters Chemical group 0.000 description 1
- 229930029653 phosphoenolpyruvate Natural products 0.000 description 1
- DTBNBXWJWCWCIK-UHFFFAOYSA-N phosphoenolpyruvic acid Chemical compound OC(=O)C(=C)OP(O)(O)=O DTBNBXWJWCWCIK-UHFFFAOYSA-N 0.000 description 1
- 108010064607 phosphoglucokinase Proteins 0.000 description 1
- 108091000115 phosphomannomutase Proteins 0.000 description 1
- 150000008300 phosphoramidites Chemical class 0.000 description 1
- 238000000053 physical method Methods 0.000 description 1
- 239000002504 physiological saline solution Substances 0.000 description 1
- 230000036470 plasma concentration Effects 0.000 description 1
- 229920000729 poly(L-lysine) polymer Polymers 0.000 description 1
- 229920002401 polyacrylamide Polymers 0.000 description 1
- 229920002647 polyamide Polymers 0.000 description 1
- 231100000683 possible toxicity Toxicity 0.000 description 1
- 239000011591 potassium Substances 0.000 description 1
- 229910052700 potassium Inorganic materials 0.000 description 1
- 230000003449 preventive effect Effects 0.000 description 1
- 230000002035 prolonged effect Effects 0.000 description 1
- 238000011321 prophylaxis Methods 0.000 description 1
- 239000012268 protein inhibitor Substances 0.000 description 1
- 229940121649 protein inhibitor Drugs 0.000 description 1
- 108010008370 protein phosphatase 4 Proteins 0.000 description 1
- 108010008929 proto-oncogene protein Spi-1 Proteins 0.000 description 1
- 239000002212 purine nucleoside Substances 0.000 description 1
- JUJWROOIHBZHMG-UHFFFAOYSA-O pyridinium Chemical compound C1=CC=[NH+]C=C1 JUJWROOIHBZHMG-UHFFFAOYSA-O 0.000 description 1
- ZLIBICFPKPWGIZ-UHFFFAOYSA-N pyrimethanil Chemical compound CC1=CC(C)=NC(NC=2C=CC=CC=2)=N1 ZLIBICFPKPWGIZ-UHFFFAOYSA-N 0.000 description 1
- 238000000163 radioactive labelling Methods 0.000 description 1
- 239000011535 reaction buffer Substances 0.000 description 1
- 230000006798 recombination Effects 0.000 description 1
- 238000005215 recombination Methods 0.000 description 1
- 230000007115 recruitment Effects 0.000 description 1
- 230000022983 regulation of cell cycle Effects 0.000 description 1
- 230000022532 regulation of transcription, DNA-dependent Effects 0.000 description 1
- 108091008146 restriction endonucleases Proteins 0.000 description 1
- 210000001525 retina Anatomy 0.000 description 1
- 201000009410 rhabdomyosarcoma Diseases 0.000 description 1
- 210000003705 ribosome Anatomy 0.000 description 1
- 210000003296 saliva Anatomy 0.000 description 1
- 239000012723 sample buffer Substances 0.000 description 1
- 230000035945 sensitivity Effects 0.000 description 1
- 238000012163 sequencing technique Methods 0.000 description 1
- 230000009919 sequestration Effects 0.000 description 1
- 108010060966 silk gland factor-1 Proteins 0.000 description 1
- 235000020183 skimmed milk Nutrition 0.000 description 1
- 210000003491 skin Anatomy 0.000 description 1
- 102000030938 small GTPase Human genes 0.000 description 1
- 108060007624 small GTPase Proteins 0.000 description 1
- 102100024840 snRNA-activating protein complex subunit 1 Human genes 0.000 description 1
- 102100024838 snRNA-activating protein complex subunit 2 Human genes 0.000 description 1
- 102100022779 snRNA-activating protein complex subunit 3 Human genes 0.000 description 1
- 102100022780 snRNA-activating protein complex subunit 4 Human genes 0.000 description 1
- 101150055666 sox6 gene Proteins 0.000 description 1
- 125000006850 spacer group Chemical group 0.000 description 1
- 235000019698 starch Nutrition 0.000 description 1
- 239000008107 starch Substances 0.000 description 1
- 238000007619 statistical method Methods 0.000 description 1
- 235000003702 sterols Nutrition 0.000 description 1
- 238000003860 storage Methods 0.000 description 1
- 230000036435 stunted growth Effects 0.000 description 1
- 235000000346 sugar Nutrition 0.000 description 1
- 150000008163 sugars Chemical class 0.000 description 1
- 230000008093 supporting effect Effects 0.000 description 1
- 230000001629 suppression Effects 0.000 description 1
- 208000024891 symptom Diseases 0.000 description 1
- 230000009885 systemic effect Effects 0.000 description 1
- 101150115978 tbx5 gene Proteins 0.000 description 1
- 238000004809 thin layer chromatography Methods 0.000 description 1
- 108020002982 thioesterase Proteins 0.000 description 1
- RYYWUUFWQRZTIU-UHFFFAOYSA-K thiophosphate Chemical compound [O-]P([O-])([O-])=S RYYWUUFWQRZTIU-UHFFFAOYSA-K 0.000 description 1
- 108060008226 thioredoxin Proteins 0.000 description 1
- 229940094937 thioredoxin Drugs 0.000 description 1
- 230000000699 topical effect Effects 0.000 description 1
- 231100000419 toxicity Toxicity 0.000 description 1
- 230000001988 toxicity Effects 0.000 description 1
- 108010014677 transcription factor TFIIE Proteins 0.000 description 1
- 230000002103 transcriptional effect Effects 0.000 description 1
- 108010071511 transcriptional intermediary factor 1 Proteins 0.000 description 1
- 238000003151 transfection method Methods 0.000 description 1
- 230000007704 transition Effects 0.000 description 1
- 210000004881 tumor cell Anatomy 0.000 description 1
- 239000000439 tumor marker Substances 0.000 description 1
- 241001430294 unidentified retrovirus Species 0.000 description 1
- 230000003827 upregulation Effects 0.000 description 1
- 229940035893 uracil Drugs 0.000 description 1
- DJJCXFVJDGTHFX-XVFCMESISA-N uridine 5'-monophosphate Chemical compound O[C@@H]1[C@H](O)[C@@H](COP(O)(O)=O)O[C@H]1N1C(=O)NC(=O)C=C1 DJJCXFVJDGTHFX-XVFCMESISA-N 0.000 description 1
- 210000002700 urine Anatomy 0.000 description 1
- 238000010200 validation analysis Methods 0.000 description 1
- 230000003966 vascular damage Effects 0.000 description 1
- 230000007733 viral latency Effects 0.000 description 1
- 238000003260 vortexing Methods 0.000 description 1
- 238000012982 x-ray structure analysis Methods 0.000 description 1
Classifications
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
- C12N15/00—Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
- C12N15/09—Recombinant DNA-technology
- C12N15/11—DNA or RNA fragments; Modified forms thereof; Non-coding nucleic acids having a biological activity
- C12N15/115—Aptamers, i.e. nucleic acids binding a target molecule specifically and with high affinity without hybridising therewith ; Nucleic acids binding to non-nucleic acids, e.g. aptamers
-
- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07H—SUGARS; DERIVATIVES THEREOF; NUCLEOSIDES; NUCLEOTIDES; NUCLEIC ACIDS
- C07H21/00—Compounds containing two or more mononucleotide units having separate phosphate or polyphosphate groups linked by saccharide radicals of nucleoside groups, e.g. nucleic acids
- C07H21/04—Compounds containing two or more mononucleotide units having separate phosphate or polyphosphate groups linked by saccharide radicals of nucleoside groups, e.g. nucleic acids with deoxyribosyl as saccharide radical
-
- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61K—PREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
- A61K48/00—Medicinal preparations containing genetic material which is inserted into cells of the living body to treat genetic diseases; Gene therapy
-
- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61P—SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
- A61P19/00—Drugs for skeletal disorders
- A61P19/02—Drugs for skeletal disorders for joint disorders, e.g. arthritis, arthrosis
-
- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61P—SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
- A61P31/00—Antiinfectives, i.e. antibiotics, antiseptics, chemotherapeutics
-
- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61P—SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
- A61P31/00—Antiinfectives, i.e. antibiotics, antiseptics, chemotherapeutics
- A61P31/12—Antivirals
-
- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61P—SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
- A61P35/00—Antineoplastic agents
-
- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61P—SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
- A61P35/00—Antineoplastic agents
- A61P35/02—Antineoplastic agents specific for leukemia
-
- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61P—SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
- A61P35/00—Antineoplastic agents
- A61P35/04—Antineoplastic agents specific for metastasis
-
- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61P—SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
- A61P43/00—Drugs for specific purposes, not provided for in groups A61P1/00-A61P41/00
-
- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61P—SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
- A61P9/00—Drugs for disorders of the cardiovascular system
- A61P9/10—Drugs for disorders of the cardiovascular system for treating ischaemic or atherosclerotic diseases, e.g. antianginal drugs, coronary vasodilators, drugs for myocardial infarction, retinopathy, cerebrovascula insufficiency, renal arteriosclerosis
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
- C12N2310/00—Structure or type of the nucleic acid
- C12N2310/10—Type of nucleic acid
- C12N2310/16—Aptamers
-
- G—PHYSICS
- G01—MEASURING; TESTING
- G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
- G01N2500/00—Screening for compounds of potential therapeutic value
- G01N2500/04—Screening involving studying the effect of compounds C directly on molecule A (e.g. C are potential ligands for a receptor A, or potential substrates for an enzyme A)
Landscapes
- Health & Medical Sciences (AREA)
- Life Sciences & Earth Sciences (AREA)
- Chemical & Material Sciences (AREA)
- Engineering & Computer Science (AREA)
- Organic Chemistry (AREA)
- General Health & Medical Sciences (AREA)
- Genetics & Genomics (AREA)
- Public Health (AREA)
- Medicinal Chemistry (AREA)
- Veterinary Medicine (AREA)
- Pharmacology & Pharmacy (AREA)
- Animal Behavior & Ethology (AREA)
- Bioinformatics & Cheminformatics (AREA)
- Chemical Kinetics & Catalysis (AREA)
- General Chemical & Material Sciences (AREA)
- Nuclear Medicine, Radiotherapy & Molecular Imaging (AREA)
- Molecular Biology (AREA)
- Biomedical Technology (AREA)
- Biotechnology (AREA)
- General Engineering & Computer Science (AREA)
- Zoology (AREA)
- Wood Science & Technology (AREA)
- Biochemistry (AREA)
- Oncology (AREA)
- Microbiology (AREA)
- Plant Pathology (AREA)
- Physics & Mathematics (AREA)
- Biophysics (AREA)
- Communicable Diseases (AREA)
- Urology & Nephrology (AREA)
- Heart & Thoracic Surgery (AREA)
- Vascular Medicine (AREA)
- Hematology (AREA)
- Virology (AREA)
- Cardiology (AREA)
- Immunology (AREA)
- Orthopedic Medicine & Surgery (AREA)
- Rheumatology (AREA)
- Physical Education & Sports Medicine (AREA)
- Epidemiology (AREA)
Abstract
The invention relates to the use of an L-nucleic acid as an intracellularly active substance.
Description
DEMANDES OU BREVETS VOLUMINEUX
LA PRESENTE PARTIE I)E CETTE DEMANDE OU CE BREVETS
COMPREND PLUS D'UN TOME.
CECI EST LE TOME DE _2 NOTE: Pour les tomes additionels, veillez contacter le Bureau Canadien des Brevets.
JUMBO APPLICATIONS / PATENTS
THIS SECTION OF THE APPLICATION / PATENT CONTAINS MORE
THAN ONE VOLUME.
NOTE: For additional volumes please contact the Canadian Patent Office.
New use of spiegelmers One aspect of the present invention relates to a new use of spiegelmers. Another aspect of the present invention relates to spiegelmers that bind HMG proteins.
With advances in molecular medicine it has become possible to identify target molecules involved in a disease or a disease state and to act on these specifically so as thereby to treat or prevent the disease or the disease state or at least to alleviate the symptoms associated therewith. The target molecules can in principle be divided into two groups. A first group includes target molecules that are present extracellularly and can thus in principle be brought into contact with an active substance by administering the latter in a body fluid or a body cavity that contains the target molecule. The first group of target molecules is herein also referred to as extracellular target molecules. The second group of target molecules includes target molecules that are present in cells, these cells being involved in the disease to be treated or in the predisposition to the disease. It is not necessary in this connection for the target molecule to be directly responsible for the disease state or directly connected with the predisposition to the disease. Instead, it is sufficient if the respective target molecule is involved in an action cascade, the course of which is influenced by the active substance, with the result that the active substance is suitable for the treatment or prevention of the disease. The second group of target molecules is herein also referred to as intracellular target molecules.
The nature of the target molecule, i.e, extracellular or intracellular target molecule, determines in principle the binding class, with which an attempt can be made to effect the interaction, necessary for the therapeutic or preventive action, between the active substance, typically the pharmaceutical active substance, and the target molecule. In virtually all cases so-called small molecules can be used, i.e. chemical compounds with a molecular weight of typically 1000 daltons or less. These molecules can interact in the desired manner directly with extracellular target molecules, as well as with intracellular target moleculeso Against this background new classes of active substances have been developed by the biotechnology industry, such as for example antibodies, in particular monoclonal antibodies, antisense molecules, siRNA molecules, aptamers and spiegelmers. Although some of these classes of molecules are still in the preliminary stage of clinical investigations, there exist at least in the case of antibodies and antisense molecules products that are already in clinical use. However, with these new classes of substances there are also significant problems as regards addressing intracellular target moleculesa Thus, for example, the intracellular use of antibodies is currently still not always possible, at least not to an extent or in a way and manner that allows a routine use in patients of antibodies directed against intracellular target molecules for the purposes of treatment and/or prophylaxis. Also, the other new classes of active substances, in particular antisense molecules and siRNA molecules, must on account of their action mechanism be introduced into the respective cell containing the target molecule or the gene coding for the target molecule. The targeted release of the active substance, also termed delivery, is also for these classes of substances the currently limiting factor for a clinical application.
The same is also true of aptamers and spiegelmers, i,e, functional nucleic acids with a defined three-dimensional structure that allows the specific interaction with the respective target molecules. The use of aptamers in order to address intracellular target molecules utilises methods of gene technology, more specifically gene therapy. The aptamers, also termed intramers, directed against an intracellular target molecule are incorporated into the respective target cell by means of gene technology methods.
Such an approach is however also subject to considerable limitations, not least on account of the lack of acceptance of treatment approaches based on gene therapy. In particular the route adopted in the case of intramers, involving intracellular expression of a nucleic acid coding intracellularly for the respective aptamer, is in principle closed to spiegelmers, since no biological system exists which would be capable of synthesising spiegelmers, iaea aptamers consisting of L-nucleotideso The object of the present invention is accordingly to provide a class of substances that is able to interact specifically with intracellular target molecules, i.e.
target molecules that are present in a cell.
According to the invention this object is achieved by the subject-matter of the accompanying independent claims.
Preferred embodiments are disclosed in the sub-claims.
According to the present invention the basic object is achieved by the subject-matter of the independent claims.
Preferred embodiments are disclosed in the sub-claims.
According to a first aspect of the invention the object is achieved by the use of a L-nucleic acid as intracellular active agent.
In a first embodiment of the first aspect the L-nucleic acid is a spiegelmer>
In a second embodiment of the first aspect, which is also an embodiment of the first embodiment, the L-nucleic acid interacts with an intracellular receptor.
In a third embodiment of the first aspect, which is also an embodiment of the second embodiment, the intracellular receptor is selected from the group comprising molecular receptors, enzymes, chaperone molecules, signal peptides, intracellular structures and metabolic intermediates.
In a fourth embodiment of the first aspect, which is also an embodiment of the second embodiment, the intracellular receptor is selected from the group comprising polypeptides, carbohydrates, nucleic acids, lipids and combinations thereof.
In a fifth embodiment of the first aspect, which is also an 5 embodiment of the second, third and fourth embodiment, the L-nucleic acid interacts with an intracellular receptor within a cell.
In a sixth embodiment of the first aspect, which is also an embodiment of the second, third, fourth and fifth embodiment, the intracellular receptor is selected from the group comprising transcription factors and DNA-binding proteins binding an AT hook.
In a seventh embodiment of the first aspect, which is also an embodiment of the sixth embodiment, the intracellular receptor is selected from the group comprising HMG
proteins, preferably from the group comprising HMGA1, HMGAla, HMGAlb, and HMGA2 a According to a second aspect of the present invention this object is achieved by a method for binding an intracellular receptor, comprising:
- providing a cell containing at least one intracellular receptor, - providing a L-nucleic acid, and - incubating the cell with the L-nucleic acid.
LA PRESENTE PARTIE I)E CETTE DEMANDE OU CE BREVETS
COMPREND PLUS D'UN TOME.
CECI EST LE TOME DE _2 NOTE: Pour les tomes additionels, veillez contacter le Bureau Canadien des Brevets.
JUMBO APPLICATIONS / PATENTS
THIS SECTION OF THE APPLICATION / PATENT CONTAINS MORE
THAN ONE VOLUME.
NOTE: For additional volumes please contact the Canadian Patent Office.
New use of spiegelmers One aspect of the present invention relates to a new use of spiegelmers. Another aspect of the present invention relates to spiegelmers that bind HMG proteins.
With advances in molecular medicine it has become possible to identify target molecules involved in a disease or a disease state and to act on these specifically so as thereby to treat or prevent the disease or the disease state or at least to alleviate the symptoms associated therewith. The target molecules can in principle be divided into two groups. A first group includes target molecules that are present extracellularly and can thus in principle be brought into contact with an active substance by administering the latter in a body fluid or a body cavity that contains the target molecule. The first group of target molecules is herein also referred to as extracellular target molecules. The second group of target molecules includes target molecules that are present in cells, these cells being involved in the disease to be treated or in the predisposition to the disease. It is not necessary in this connection for the target molecule to be directly responsible for the disease state or directly connected with the predisposition to the disease. Instead, it is sufficient if the respective target molecule is involved in an action cascade, the course of which is influenced by the active substance, with the result that the active substance is suitable for the treatment or prevention of the disease. The second group of target molecules is herein also referred to as intracellular target molecules.
The nature of the target molecule, i.e, extracellular or intracellular target molecule, determines in principle the binding class, with which an attempt can be made to effect the interaction, necessary for the therapeutic or preventive action, between the active substance, typically the pharmaceutical active substance, and the target molecule. In virtually all cases so-called small molecules can be used, i.e. chemical compounds with a molecular weight of typically 1000 daltons or less. These molecules can interact in the desired manner directly with extracellular target molecules, as well as with intracellular target moleculeso Against this background new classes of active substances have been developed by the biotechnology industry, such as for example antibodies, in particular monoclonal antibodies, antisense molecules, siRNA molecules, aptamers and spiegelmers. Although some of these classes of molecules are still in the preliminary stage of clinical investigations, there exist at least in the case of antibodies and antisense molecules products that are already in clinical use. However, with these new classes of substances there are also significant problems as regards addressing intracellular target moleculesa Thus, for example, the intracellular use of antibodies is currently still not always possible, at least not to an extent or in a way and manner that allows a routine use in patients of antibodies directed against intracellular target molecules for the purposes of treatment and/or prophylaxis. Also, the other new classes of active substances, in particular antisense molecules and siRNA molecules, must on account of their action mechanism be introduced into the respective cell containing the target molecule or the gene coding for the target molecule. The targeted release of the active substance, also termed delivery, is also for these classes of substances the currently limiting factor for a clinical application.
The same is also true of aptamers and spiegelmers, i,e, functional nucleic acids with a defined three-dimensional structure that allows the specific interaction with the respective target molecules. The use of aptamers in order to address intracellular target molecules utilises methods of gene technology, more specifically gene therapy. The aptamers, also termed intramers, directed against an intracellular target molecule are incorporated into the respective target cell by means of gene technology methods.
Such an approach is however also subject to considerable limitations, not least on account of the lack of acceptance of treatment approaches based on gene therapy. In particular the route adopted in the case of intramers, involving intracellular expression of a nucleic acid coding intracellularly for the respective aptamer, is in principle closed to spiegelmers, since no biological system exists which would be capable of synthesising spiegelmers, iaea aptamers consisting of L-nucleotideso The object of the present invention is accordingly to provide a class of substances that is able to interact specifically with intracellular target molecules, i.e.
target molecules that are present in a cell.
According to the invention this object is achieved by the subject-matter of the accompanying independent claims.
Preferred embodiments are disclosed in the sub-claims.
According to the present invention the basic object is achieved by the subject-matter of the independent claims.
Preferred embodiments are disclosed in the sub-claims.
According to a first aspect of the invention the object is achieved by the use of a L-nucleic acid as intracellular active agent.
In a first embodiment of the first aspect the L-nucleic acid is a spiegelmer>
In a second embodiment of the first aspect, which is also an embodiment of the first embodiment, the L-nucleic acid interacts with an intracellular receptor.
In a third embodiment of the first aspect, which is also an embodiment of the second embodiment, the intracellular receptor is selected from the group comprising molecular receptors, enzymes, chaperone molecules, signal peptides, intracellular structures and metabolic intermediates.
In a fourth embodiment of the first aspect, which is also an embodiment of the second embodiment, the intracellular receptor is selected from the group comprising polypeptides, carbohydrates, nucleic acids, lipids and combinations thereof.
In a fifth embodiment of the first aspect, which is also an 5 embodiment of the second, third and fourth embodiment, the L-nucleic acid interacts with an intracellular receptor within a cell.
In a sixth embodiment of the first aspect, which is also an embodiment of the second, third, fourth and fifth embodiment, the intracellular receptor is selected from the group comprising transcription factors and DNA-binding proteins binding an AT hook.
In a seventh embodiment of the first aspect, which is also an embodiment of the sixth embodiment, the intracellular receptor is selected from the group comprising HMG
proteins, preferably from the group comprising HMGA1, HMGAla, HMGAlb, and HMGA2 a According to a second aspect of the present invention this object is achieved by a method for binding an intracellular receptor, comprising:
- providing a cell containing at least one intracellular receptor, - providing a L-nucleic acid, and - incubating the cell with the L-nucleic acid.
In a first embodiment of the second aspect the incubation takes place under conditions so that the L-nucleic acid binds to the intracellular receptor in the cell.
In a second embodiment of the second aspect, which is also an embodiment of the first embodiment, the L-nucleic acid is a spiegelmer.
In a third embodiment of the second aspect, which is also an embodiment of the first and second embodiment, after the incubation of the cell with the L-nucleic acid it is determined whether a binding, in particular an intracellular binding, of the L-nucleic acid to the intracellular receptor has taken place.
In a fourth embodiment of the second aspect, which is also an embodiment of the first, second and third embodiment, the intracellular receptor is selected from the group comprising molecular receptors, metabolic intermediates and enzymes.
In a fifth embodiment of the second aspect, which is also an embodiment of the first, second, third and fourth embodiment, the intracellular receptor is selected from the group comprising polypeptides, carbohydrates, nucleic acids, lipids and combinations thereof.
In a sixth embodiment of the second aspect, which is also an embodiment of the first, second, third, fourth and fifth embodiment, the intracellular receptor is selected from the group comprising transcription factors and DNA-binding proteins binding an AT hook.
In a seventh embodiment of the second aspect, which is also an embodiment of the sixth embodiment, the intracellular receptor is selected from the group comprising HMG
proteins, and is preferably selected from the group comprising HMGA1, HMGAla, HMGAlb and HMGA2.
According to a third aspect of the invention this object is achieved by use of a L-nucleic acid to manufacture a medicament for the treatment and/or prevention of a disease, the target molecule of the medicament being an intracellular target molecule.
In a first embodiment of the third aspect the intracellular receptor is selected from the group comprising molecular receptors, enzymes, chaperone molecules, signal peptides, intracellular structures and metabolic intermediateso In a second embodiment of the third aspect, which is also an embodiment of the first embodiment, the intracellular receptor is selected from the group comprising polypeptides, carbohydrates, nucleic acids, lipids and combinations thereof.
In a third embodiment of the third aspect, which is also an embodiment of the first and second embodiment, the target molecule is selected from the group comprising transcription factors and DNA-binding proteins binding an AT hook.
In a second embodiment of the second aspect, which is also an embodiment of the first embodiment, the L-nucleic acid is a spiegelmer.
In a third embodiment of the second aspect, which is also an embodiment of the first and second embodiment, after the incubation of the cell with the L-nucleic acid it is determined whether a binding, in particular an intracellular binding, of the L-nucleic acid to the intracellular receptor has taken place.
In a fourth embodiment of the second aspect, which is also an embodiment of the first, second and third embodiment, the intracellular receptor is selected from the group comprising molecular receptors, metabolic intermediates and enzymes.
In a fifth embodiment of the second aspect, which is also an embodiment of the first, second, third and fourth embodiment, the intracellular receptor is selected from the group comprising polypeptides, carbohydrates, nucleic acids, lipids and combinations thereof.
In a sixth embodiment of the second aspect, which is also an embodiment of the first, second, third, fourth and fifth embodiment, the intracellular receptor is selected from the group comprising transcription factors and DNA-binding proteins binding an AT hook.
In a seventh embodiment of the second aspect, which is also an embodiment of the sixth embodiment, the intracellular receptor is selected from the group comprising HMG
proteins, and is preferably selected from the group comprising HMGA1, HMGAla, HMGAlb and HMGA2.
According to a third aspect of the invention this object is achieved by use of a L-nucleic acid to manufacture a medicament for the treatment and/or prevention of a disease, the target molecule of the medicament being an intracellular target molecule.
In a first embodiment of the third aspect the intracellular receptor is selected from the group comprising molecular receptors, enzymes, chaperone molecules, signal peptides, intracellular structures and metabolic intermediateso In a second embodiment of the third aspect, which is also an embodiment of the first embodiment, the intracellular receptor is selected from the group comprising polypeptides, carbohydrates, nucleic acids, lipids and combinations thereof.
In a third embodiment of the third aspect, which is also an embodiment of the first and second embodiment, the target molecule is selected from the group comprising transcription factors and DNA-binding proteins binding an AT hook.
In a fourth embodiment of the third aspect, which is also an embodiment of the third embodiment, the target molecule is selected from the group comprising HMG proteins, and is preferably selected from the group comprising HMGA1, HMGAla, HMGAlb and HMGA2.
In a fifth embodiment of the third aspect, which is also an embodiment of the third and fourth embodiment, the disease is selected from the group comprising tumour diseases, virus infections and arteriosclerosis.
In a sixth embodiment of the third aspect, which is also an embodiment of the fifth embodiment, the tumour disease is selected from the group comprising mesenchymal tumours, epithelial tumours, benign tumours, malignant tumours and metastasising tumours.
In a seventh embodiment of the third aspect, which is also an embodiment of the third, fourth, fifth and sixth embodiment, the target molecule is HMGA and the diseases are selected from the group comprising carcinomas of the prostate, pancreas, thyroid, cervix, stomach, breast, colon/rectum, ovaries; pneuroblastomas; lymphomas, uterine leiomyomas; lipomas; endometrial polyps; chondroid hamartomas of the lungs; pleomorphic adenomas of the salivary glands; haemangiopericytomas; chondromatous tumours; aggressive angiomyxomas; diffuse astrocytomas;
osteoclastomas; skin cancer; Burkitt's lymphoma; Lewis lung cancer; leukaemia; non-small-cell lung cancer; as well as in each case metastases and/or metastasising forms thereof.
In a fifth embodiment of the third aspect, which is also an embodiment of the third and fourth embodiment, the disease is selected from the group comprising tumour diseases, virus infections and arteriosclerosis.
In a sixth embodiment of the third aspect, which is also an embodiment of the fifth embodiment, the tumour disease is selected from the group comprising mesenchymal tumours, epithelial tumours, benign tumours, malignant tumours and metastasising tumours.
In a seventh embodiment of the third aspect, which is also an embodiment of the third, fourth, fifth and sixth embodiment, the target molecule is HMGA and the diseases are selected from the group comprising carcinomas of the prostate, pancreas, thyroid, cervix, stomach, breast, colon/rectum, ovaries; pneuroblastomas; lymphomas, uterine leiomyomas; lipomas; endometrial polyps; chondroid hamartomas of the lungs; pleomorphic adenomas of the salivary glands; haemangiopericytomas; chondromatous tumours; aggressive angiomyxomas; diffuse astrocytomas;
osteoclastomas; skin cancer; Burkitt's lymphoma; Lewis lung cancer; leukaemia; non-small-cell lung cancer; as well as in each case metastases and/or metastasising forms thereof.
In an eighth embodiment of the third aspect, which is also an embodiment of the fifth embodiment, the arteriosclerosis is triggered or caused by formation of arteriosclerotic plaques mediated by HMGA1, HMGAla, HNlGlb and/or HMGA2.
In a ninth embodiment of the third aspect, which is also an embodiment of the first, second, third, fourth, fifth, sixth, seventh and eighth embodiment, the intracellular target molecule is present intracellularlyo According to a fourth aspect of the invention the object is achieved by the use of a L-nucleic acid for the manufacture of a diagnostic agent for diagnostic purposes, the target molecule of the diagnostic agent being an intracellular target molecule.
In a first embodiment of the fourth aspect the intracellular receptor is selected from the group comprising molecular receptors, enzymes, chaperone molecules, signal peptides, intracellular structures and metabolic intermediates.
In a second embodiment of the fourth aspect, which is also an embodiment of the first embodiment, the intracellular receptor is selected from the group comprising polypeptides, carbohydrates, nucleic acids, lipids and combinations thereof.
In a third embodiment of the fourth aspect, which is also an embodiment of the first and second embodiment, the target molecule is selected from the group comprising transcription factors and DNA-binding proteins binding an AT hook.
5 In a fourth embodiment of the fourth aspect, which is also an embodiment of the third embodiment, the target molecule is selected from the group comprising HMG proteins, and is preferably selected from the group comprising HMGA, HMGAla, HMGAlb and HMGA2>
In a fifth embodiment of the fourth aspect, which is also an embodiment of the third and fourth embodiment, the disease is selected from the group comprising tumour diseases, virus infections and arteriosclerosis.
In a sixth embodiment of the fourth aspect, which is also an embodiment of the fifth embodiment, the tumour disease is selected from the group comprising mesenchymal tumours, epithelial tumours, benign tumours, malignant tumours and metastasising tumourso In a seventh embodiment of the fourth aspect, which is also an embodiment of the third, fourth, fifth and sixth embodiment, the target molecule is HMGA and the disease is selected from the group comprising carcinomas of the prostate, pancreas, thyroid, cervix, stomach, breast, colon/rectum, ovaries; neuroblastomas; lymphomas, uterine leiomyomas; lipomas; endometrial polyps; chondroid hamartomas of the lungs; pleomorphic adenomas of the salivary glands; haemangiopericytomas; chondromatous tumours; aggressive angiomyxomas; diffuse astrocytomas;
osteoclastomas; skin cancer; Burkitt's lymphoma; Lewis lung cancer; leukaemia; non-small-cell lung cancer; as well as in each case metastases and/or metastasising forms thereof.
In an eighth embodiment of the fourth aspect, which is also an embodiment of the fifth embodiment, the arteriosclerosis is triggered by formation of arteriosclerotic plaques mediated by HMGA1, HMGAla, HMGlb and/or HMGA2e In a ninth embodiment of the fourth aspect, which is also an embodiment of the first, second, third, fourth, fifth, sixth and seventh emodiment, the intracellular target molecule is present intracellularly, According to a fifth aspect of the invention the object is achieved by a composition comprising a L-nucleic acid binding to an intracellular target molecule, and a delivery vehicle.
In a first embodiment of the fifth aspect the delivery vehicle is a delivery vehicle suitable for the intracellular delivery of the L-nucleic acid.
In a second embodiment of the fifth aspect, which is also an embodiment of the first embodiment, the delivery vehicle is selected from the group comprising vehicles, conjugates and physical means.
In a third embodiment of the fifth aspect, which is also an embodiment of the second embodiment, the delivery vehicle is a vehicle selected from the group comprising liposomes, nanoparticles, microparticles, cyclodextrins or dendrimers, or a vesicle consisting of polypeptides, polyethyleneimine and/or amphipathic molecules.
In a fourth embodiment of the fifth aspect, which is also an embodiment of the second embodiment, the delivery vehicle is a conjugate, wherein the conjugate is a conjugate for the receptor-mediated endocytosis, a conjugate with a fusogenic peptide, a conjugate with a signal peptide, a conjugate with a nucleic acid, preferably a conjugate with a spiegelmer, or a lipophilic conjugatea In a fifth embodiment of the fifth aspect, which is also an embodiment of the second embodiment, the delivery vehicle is a physical means, the physical means preferably being selected from the group comprising electroporation, iontophoresis, pressure, ultrasound and shock waves.
In a sixth embodiment of the fifth aspect, which is also an embodiment of the third embodiment, the delivery vehicle comprises polyethyleneimine.
In a seventh embodiment of the fifth aspect, which is also an embodiment of the sixth embodiment, the polyethyleneimine is a branched polyethyleneimine with a molecular weight of about 25 kDa, In an eighth embodiment of the fifth aspect, which is also an embodiment of the sixth and seventh embodiment, the polyethyleneimine forms a micelle or a micelle-like structurea In a ninth embodiment of the fifth aspect, which is also an embodiment of the first, second, third, fourth, fifth, sixth, seventh and eighth embodiment, the L-nucleic acid is a spiegelmer.
In a tenth embodiment of the fifth aspect, which is also an embodiment of the ninth embodiment, the spiegelmer carries a modification, the said modification being selected from the group comprising PEG residues.
In an eleventh embodiment of the fifth aspect, which is also an embodiment of the tenth embodiment, the PEG residue has a molecular weight of about 1,000 to 10,000 Da, preferably a molecular weight of about 1,500 to 2,500 Da and most preferably a molecular weight of about 2,000 Da, In a twelfth embodiment of the fifth aspect, which is also an embodiment of the tenth and eleventh embodiment, the modification is bound to the 5' terminus or to the 3' terminus of the L-nucleic acid.
In a thirteenth embodiment of the fifth aspect, which is also an embodiment of the ninth, tenth, eleventh and twelfth embodiment, in the composition the ratio of the total number of nitrogen groups of the polyethyleneimine to the total number of phosphate groups of the nucleic acid contained in the composition is about 1 to 20, preferably about 1,5 to 10, more preferably about 2 to 5 and most preferably about 2 to 3.
In a fourteenth embodiment of the fifth aspect, which is also an embodiment of the first, second, third, fourth, fifth, sixth, seventh, eighth, ninth, tenth, eleventh, twelfth and thirteenth embodiment, the composition provides the L-nucleic acid intracellularly.
According to a sixth aspect of the invention the object is achieved by the pharmaceutical composition comprising a composition according to the fifth aspect, and a pharmaceutically acceptable carrier.
In an embodiment of the use according to the first aspect the L-nucleic acid is a composition according to the fifth aspect.
In an embodiment of the method according to the second aspect the L-nucleic acid is a composition according to the fifth aspect.
In an embodiment of the use according to the third aspect the L-nucleic acid is a composition according to the fifth aspect.
In an embodiment of the use according to the fourth aspect the L-nucleic acid is a composition according to the fifth aspect.
According to a seventh aspect of the invention the object is achieved by an HMGA-binding nucleic acid, characterised in that the nucleic acid comprises a section Box Al and a section Box A2, wherein the section Box Al and the section Box A2 are joined to one another by an intermediate section and wherein Box Al and Box A2 are selected individually and independently of one another from the group comprising 5 GGGCG, GGGUG and GGGAG.
In a first embodiment of the seventh aspect the intermediate section consists either of an intermediate section Zl comprising six or seven nucleotides, or of an 10 intermediate section Z2 comprising 12 to 25 nucleotideso In a second embodiment of the seventh aspect, which is also an embodiment of the first embodiment, the nucleic acid at the 5' end of the section Box Al has a first section and at 15 the 3' end of the section Box A2 has a second section, wherein preferably both sections independently of one another comprise four to eight nucleotides.
In a third embodiment of the seventh aspect, which is also an embodiment of the second embodiment, the two sections are at least partly or completely hybridised with one another, the hybridisation extending over four to eight nucleotide pairs.
In a fourth embodiment of the seventh aspect, which is also an embodiment of the second and third embodiments, the nucleic acid has at the 5' end of the section Box Al a section Helix Al and at the 3' end of the section Box A2 a section Helix A2, wherein preferably the section Helix Al comprises four to eight nucleotides and preferably the section Helix A2 comprises four to eight nucleotides, and wherein preferably the section Helix Al forms the first section at the 5' end of the section Box Al or a part thereof, and wherein preferably the section Helix A2 forms the second section at the 3' end of the section Box A2 or a part thereof, the length of the section Helix Al being independent of the length of the section Helix A2o In a fifth embodiment of the seventh aspect, which is also an embodiment of the fourth embodiment, the sections Helix Al and Helix A2 are at least partly or completely hybridised with one another, the hybridisation extending over four to eight nucleotide pairs.
In a sixth embodiment of the seventh aspect, which is also an embodiment of the fourth and fifth embodiment, between the 3' end of the section Helix Al and the 5' end of the section Box Al a section Helix Bl is arranged, and between the 3' end of the section Box A2 and the 5' end of the section Helix A2 a section Helix B2 is arranged, wherein preferably the length of the section Helix B1 and Helix B2 comprises in each case individually and independently a length of four to eight nucleotides.
In a seventh embodiment of the seventh aspect, which is also an embodiment of the sixth embodiment, the sections Helix Bl and Helix B2 are at least partly or completely hybridised with one another, the hybridisation extending over four to eight nucleotide pairs.
In an eighth embodiment of the seventh aspect, which is also an embodiment of the sixth and seventh embodiment, zero to five nucleotides are arranged between the 3' end of the section Helix Al and the 5' end of the section Helix B1e In a ninth embodiment of the seventh aspect, which is also an embodiment of the eighth embodiment, two nucleotides are arranged between the 3' end of the section Helix Al and the 5' end of the section Helix B1, In a tenth embodiment of the seventh aspect, which is also an embodiment of the sixth, seventh, eighth and ninth embodiment, zero to six nucleotides are arranged between the 3' end of the section Helix B2 and the 5' end of the section Helix A2.
In an eleventh embodiment of the seventh aspect, which is also an embodiment of the tenth embodiment, preferably insofar as this is an embodiment of the ninth embodiment, a nucleotide is arranged between the 3' end of the section Helix B2 and the 5' end of the section Helix A2.
In a twelfth embodiment of the seventh aspect, which is also an embodiment of the sixth, seventh, eighth, ninth, tenth and eleventh embodiment, the sum of the nucleotides of section Helix Al and of section Helix B1 is ten to twelve nucleotides, and the sum of the nucleotides of section Helix A2 and of section Helix B2 is ten to twelve nucleotides.
In a thirteenth embodiment of the seventh aspect, which is also an embodiment of the twelfth embodiment, the sum of the hybridised nucleotides from the hybridisation of section Helix Al with section Helix A2 and of section Helix B1 with section Helix B2 is ten to twelve nucleotide pairs.
In a fourteenth embodiment of the seventh aspect, which is also an embodiment of the sixth, seventh, eighth, ninth, tenth, eleventh, twelfth and thirteenth embodiment, preferably of the sixth or seventh embodiment, the nucleic acid does not comprise a section Helix Al and Helix A2, whereby the section Helix Bl is arranged at the 5' end of the nucleic acid and the Helix B2 is arranged at the 3' end, wherein preferably the length of the section Helix B1 and Helix B2 comprises in each case individually and independently a length of four to eight nucleotides.
In a fifteenth embodiment of the seventh aspect, which is also an embodiment of the fourteenth embodiment, the sections Helix Bl and Helix B2 are at least partly or completely hybridised with one another, the hybridisation extending over four to eight nucleotide pairs.
In a sixteenth embodiment of the seventh aspect, which is an embodiment of the fourth and fifth embodiment, one to five nucleotides are arranged between the 3' end of the section Helix Al and the 5' end of the section Box Al, and one to three nucleotides are arranged between the 3' end of the section Box A2 and the 5' end of the section Helix A2o In a seventeenth embodiment of the seventh aspect, which is also an embodiment of the sixth, seventh, eighth, ninth, tenth, eleventh, twelfth, thirteenth, fourteenth and fifteenth embodiment, two nucleotides are arranged between the 3' end of the section Helix B1 and the 5' end of the section Box Al, and one to seven nucleotides are arranged between the 3' end of the section Box A2 and the 5' end of the section Helix B2o In an eighteenth embodiment of the seventh aspect, which is also an embodiment of the first, second, third, fourth, fifth, sixth, seventh, eighth and tenth embodiment, insofar as this is an embodiment of the sixth, seventh and eighth embodiment, of the twelfth and thirteenth embodiment, insofar as these are embodiments of the sixth, seventh, eighth and tenth embodiments, of the fourteenth and fifteenth embodiment, insofar as these are embodiments of the sixth, seventh, eighth, tenth, twelfth and thirteenth embodiment, or of the seventeenth embodiment, insofar as these are embodiments of the sixth, eighth, tenth, twelfth, thirteenth and fifteenth embodiment, in each case in the herein restricted scope, the intermediate section Z1 comprises six or seven nucleotides, In a nineteenth embodiment of the seventh aspect, which is also an embodiment of the eighteenth embodiment, the intermediate section Z1 comprises the sequence N1N2GN8N3N4N5, wherein N1 = U, C, A or G;
N2 = G or U;
N3 = U or C;
N4 = U or A;
N5 = G or A; and N8 = U or is absent.
In a twentieth embodiment of the seventh aspect, which is also an embodiment of the nineteenth embodiment, the nucleic acid comprises a section Box Al and a section Box A2, wherein the 3' end of the section Box Al is joined 10 directly to the 5' end of the intermediate section Zl, and the 3' end of the intermediate section Z1 is joined directly to the 5' end of the section Box A2e In a twenty-first embodiment of the seventh aspect, which 15 is also an embodiment of the eighteenth, nineteenth and twentieth embodiment, in particular of the twentieth embodiment, the nucleic acid comprises a section Helix B1 and a section Helix B2e 20 In a twenty-second embodiment of the seventh aspect, which is also an embodiment of the twenty-first embodiment, the sections Helix B1 and Helix B2 comprise in each case individually and independently of one another four to eight nucleotides, which are preferably completely or partly hybridised with one another.
In a twenty-third embodiment of the seventh aspect, which is also an embodiment of the twenty-first and twenty-second embodiment, two nucleotides N6, N7 are arranged between the 3' end of the section Helix B1 and the 5' end of the section Box Al in the 5' 3' direction, wherein N6 is G, A or U, and N7 is G or U.
In a twenty-fourth embodiment of the seventh aspect, which is also an embodiment of the twenty-first, twenty-second and twenty-third embodiment, there is no nucleotide between the 3' end of the section Box A2 and the 5' end of the section Helix B2, or the nucleotide sequence GNy is arranged in the 5' 3' direction, wherein N, comprises zero to six nucleotides, preferably 0 or 6 nucleotides.
In a twenty-fifth embodiment of the seventh aspect, which is also an embodiment of the eighteenth, nineteenth, twentieth, twenty-first, twenty-second, twenty-third and twenty-fourth embodiment, the nucleic acid comprises a section Helix Al and Helix A2.
In a twenty-sixth embodiment of the seventh aspect, which is also an embodiment of the twenty-fifth embodiment, the sections Helix Al and Helix A2 comprise in each case individually and independently of one another four to eight nucleotides, wherein preferably the sections Helix Al and Helix A2 are completely or partly hybridised with one anothero In a twenty-seventh embodiment of the seventh aspect, which is also an embodiment of the twenty-fifth and twenty-sixth embodiment, a nucleotides sequence Nx is arranged between the 3' end of the section Helix Al and the 5' end of the section Helix B1, wherein NX comprises zero to five nucleotides.
In a twenty-eighth embodiment of the seventh aspect, which is also an embodiment of the twenty-fifth, twenty-sixth and twenty-seventh embodiment, a nucleotide sequence NZ is arranged between the 3' end of the section Helix B2 and the 5' end of the section Helix A2, wherein NZ comprises zero to six nucleotides<
In a twenty-ninth embodiment of the seventh aspect, which is also an embodiment of the twenty-first, twenty-second, twenty-third, twenty-fourth, twenty-fifth, twenty-sixth, twenty-seventh and twenty-eighth embodiment, the sum of the hybridised nucleotides from the hybridisation of section Helix Al with section Helix A2 and of section Helix B1 with section Helix B2 is ten to twelve nucleotide pairs.
In a thirtieth embodiment of the seventh aspect, which is also an embodiment of the twenty-fourth, twenty-fifth, twenty-sixth, twenty-seventh, twenty-eighth and twenty-ninth embodiment, the nucleotide sequence GNy is arranged between the 3' end of the section Box A2 and the 5' end of the section Helix B2 in the 5'- 3' direction, wherein Ny comprises zero to six nucleotides, preferably 0 or 6 nucleotides.
In a thirty-first embodiment of the seventh aspect, which is also an embodiment of the thirtieth embodiment, the HMGA-binding nucleic acid comprises the following structure Helix Al-NX-H lix B1 N6N7BOx A1 1N2GN8N3N4N5BOX A2G-Ny-He1ix B2 NZ-Helix A2 wherein Nl = U, C, A or G;
N2 = G or U;
N3 = U or C;
N4 = U or A;
N5 = G or A;
N6 = G, A or U;
N7 = G or U;
N8 = U or is no nucleotide;
IVX = zero to five nucleotides;
Ny = zero or six nucleotides; and NZ = zero to six nucleotides;
the section Box Al and section Box A2 are selected in each case individually and independently of one another from the group of nucleotide sequences comprising GGGCG, GGGUG and GGGAG;
the section Helix Al and the section Helix A2 comprise in each case individually and independently of one another four to eight nucleotides, wherein preferably the sections Helix Al and Helix A2 are completely or partly hybridised with one another, and the sections Helix B1 and Helix B2 comprise in each case individually and independently of one another four to eight nucleotides, wherein preferably the sections Helix B1 and Helix B2 are completely or partly hybridised with one another and the hybridising region comprises four to eight nucleotides, and wherein the sum of the hybridised nucleotides from the hybridisation of section Helix Al with section Helix A2 and of section Helix B1 with section Helix B2 is 10 to 12 nucleotide pairs.
In a thirty-second embodiment of the seventh aspect, which is also an embodiment of the thirtieth and thirty-first embodiment, the HMGA-binding nucleic acid comprises a sequence selected from the group comprising SEQ. ID, No. 1, SEQ. ID. No. 2, SEQ. ID, No. 3, SEQ. ID. No. 5, SEQ. ID, No. 6, SEQ. ID. No. 7 and SEQ. ID, No. 13.
In a thirty-third embodiment of the seventh aspect, which is also an embodiment of the twenty-fourth, twenty-fifth, twenty-sixth, twenty-seventh, twenty-eighth and twenty-ninth embodiment, the 3' end of the section Box A2 is joined directly to the 5' end of the section Helix B2.
In a thirty-fourth embodiment of the seventh aspect, which is also an embodiment of the thirty-third embodiment, the HMGA-binding nucleic acid has the following structure Helix A1-N,,-ff~elix Bb-N6N7 Box A1 1N2GN8N3N4NSBOX A2 eIix B2mNZ-Helix A2 wherein Nl = U, C, A or G;
N2 = G or U;
N3 = U or C;
N4 = U or A;
N5 = G or A;
N6 = G, A or U;
N7 = G or U;
N8 = U or is no nucleotide;
5 NX = zero to five nucleotides; and NZ = zero to six nucleotides;
the section Box Al and Section Box A2 are selected in each case individually and independently of one another from the 10 group of nucleotide sequences comprising GGGCG, GGGUG and GGGAG;
the section Helix Al and the section Helix A2 comprise in each case individually and independently of one another 15 four to eight nucleotides, wherein preferably the sections Helix Al and Helix A2 are completely or partly hybridised with one another, and the sections Helix Bl and Helix B2 comprise in each case 20 individually and independently of one another four to eight nucleotides, wherein preferably the sections Helix Bl and Helix B2 are completely or partly hybridised with one another and the hybridising region comprises four to eight nucleotides, and wherein the sum of the hybridised 25 nucleotides from the hybridisation of section Helix Al with section Helix A2 and of section Helix Bl with section Helix B2 is 10 to 12 nucleotide pairs.
In a thirty-fifth embodiment of the seventh aspect, which is also an embodiment of the thirty-third and thirty-fourth embodiment, the HMGA-binding nucleic acid comprises a sequence including SEQ. ID. No. 3.
In a thirty-sixth embodiment of the seventh aspect, which is also an embodiment of the thirty-first embodiment, the HMGA-binding nucleic acid comprises the following structure He1ix B1-N6N7Box A1 1N2GN8N3N4N5 BOX A2 G-NY-Helix B2 In a thirty-seventh embodiment of the seventh aspect, which is also an embodiment of the thirty-fourth embodiment, the HMGA-binding nucleic acid comprises the following structure Helix BI N6N7Box A1 1N2GN8N3N4N5 BOX A2 Slix B2 In a thirty-eighth embodiment of the seventh aspect, which is also an embodiment of the thirty-sixth embodiment, the HMGA-binding nucleic acid comprises a sequence which is selected from the group including SEQ. ID. No. 1.5 and SEQ.
ID. No. 16.
In a thirty-ninth embodiment of the seventh aspect, which is also an embodiment of the first, second, third, fourth, fifth, sixth, seventh, eighth, ninth, tenth, eleventh, twelfth, thirteenth and sixteenth or seventeenth embodiment of the seventh aspect, the HMGA-binding nucleic acid comprises an intermediate section Z2 which comprises 12 to 25 nucleotides.
In a fortieth embodiment of the seventh aspect, which is also an embodiment of the thirty-ninth embodiment, the HMGA-binding nucleic acid comprises an intermediate section Z2, a section Helix Cl and a section Helix C2.
In a forty-first embodiment of the seventh aspect, which is also an embodiment of the fortieth embodiment, a central section Nc is arranged between the section Helix Cl and the section Helix C2 of the HMGA-binding nucleic acid.
In a forty-second embodiment of the seventh aspect, which is also an embodiment of the fortieth or forty-first embodiment, the length of the section Helix Cl and Helix C2 of the HMGA-binding nucleic acid are identical.
In a forty-third embodiment of the seventh aspect, which is also an embodiment of the fortieth, forty-first and forty-second embodiment, the length of the section Helix Cl and Helix C2 of the HMGA-binding nucleic acid is individually and independently three to six nucleotides, In a forty-fourth embodiment of the seventh aspect, which is also an embodiment of the fortieth, forty-first, forty-second and forty-third embodiment, the sections Helix Cl and Helix C2 of the HMGA-binding nucleic acid are completely or party hybridised with one another.
In a forty-fifth embodiment of the seventh aspect, which is also an embodiment of the thirty-ninth, fortieth, forty-first, forty-second, forty-third and forty-fourth embodiment, the central section N, of the HMGA-binding nucleic acid comprises three to five nucleotides.
In a forty-sixth embodiment of the seventh aspect, which is also an embodiment of the thirty-ninth, fortieth, forty-first, forty-second, forty-third, forty-fourth and forty-fifth embodiment, the HMGA-binding nucleic acid comprises a section Box Al and a section Box A2, wherein a nucleotide sequence Nb is arranged between the 3' end of the section Box Al and the 5' end of the section Helix C1 and comprises three nucleotides.
In a forty-seventh embodiment of the seventh aspect, which is also an embodiment of the thirty-ninth, fortieth, forty-first, forty-second, forty-third, forty-fourth, forty-fifth and forty-sixth embodiment, the HMGA-binding nucleic acid comprises a section Box Al and a section Box A2, wherein a nucleotide sequence Nd is arranged between the 3' end of the section Helix C2 and the 5' end of the section Box A2 and comprises two to five nucleotides.
In a forty-eighth embodiment of the seventh aspect, which is also an embodiment of the thirty-ninth, fortieth, forty-first, forty-second, forty-third, forty-fourth, forty-fifth, forty-sixth and forty-seventh embodiment, the HMGA-binding nucleic acid comprises a section Helix Al and a section Helix A2.
In a forty-ninth embodiment of the seventh aspect, which is also an embodiment of the forty-eighth embodiment, the sections Helix Al and Helix A2 of the HMGA-binding nucleic acid comprise in each case individually and independently of one another five to six nucleotides, wherein preferably the section Helix Al and the section Helix A2 are completely or partly hybridised with one another.
In a fiftieth embodiment of the seventh aspect, which is also an embodiment of the forty-eighth and forty-ninth embodiment, a nucleotide sequence Na is arranged between the 3' end of the section Helix Al and the 5' end of the section Box Al of the HMGA-binding nucleic acid, wherein Na comprises one to five nucleotides.
In a fifty-first embodiment of the seventh aspect, which is also an embodiment of the forty-eighth, forty-ninth and fiftieth embodiment, a nucleotide sequence GNe is arranged between the 3' end of the section Box A2 and the 5' end of the section Helix A2 of the HMGA-binding nucleic acid in the 5'-3' direction, wherein, Ne comprises one to two nucleotides, preferably A or UU.
In a fifty-second embodiment of the seventh aspect, which is also an embodiment of the forty-eighth, forty-ninth, fiftieth and fifty-first embodiment, the section Helix Cl and the section Helix C2 of the HMGA-binding nucleic acid have in each case individually and independently of one another a length of five or six nucleotides, wherein preferably the sections Helix Cl and Helix C2 are completely or partly hybridised with one anothera In a fifty-third embodiment of the seventh aspect, which is also an embodiment of the fifty-second embodiment, the HMGA-binding nucleic acid has the following structureo Helix Al-Na Box A1 -N,--rHe1ix C1g-N,-aHelix C2a-Nd Box A2 -G-Ne-Helix A2 (III) wherein Na = one to five nucleotides;
Nb = three nucleotides;
Nc = three to five nucleotides;
Nd = two to five nucleotides; and 10 Ne = one to two nucleotides, preferably A or UU;
the section Box Al and the section Box A2 are selected in each case individually and independently of one another from the group comprising GGGCG, GGGUG and GGGAG, the sections Helix Al and Helix A2 comprise in each case individually and independently of one another five or six nucleotides, and the sections Helix Cl and Helix C2 comprise in each case five or six nucleotides, which are preferably completely or partly hybridised with one another.
In a fifty-fourth embodiment of the seventh aspect, which is also an embodiment of the fifty-third embodiment, the HMGA-binding nucleic acid comprises a sequence which is selected from the group comprising SEQ. ID. No. 8, SEQ. ID.
No. 9, SEQ. ID. No. 10, SEQ. ID. No. 11, SEQ. ID. No. 14, SEQ. ID. No. 22 and SEQ. ID. No. 24.
In a fifty-fifth embodiment of the seventh aspect, which is also an embodiment of the thirty-ninth, fortieth, forty-first, forty-second, forty-third and forty-fourth embodiment, the nucleic acid comprises a section Box 1 and a section Helix Cl of the HMGA-binding nucleic acid, wherein a nucleotide A is arranged between the 3' end of the section Box Al and the 5' end of the section Helix C1o In a fifty-sixth embodiment of the seventh aspect, which is also an embodiment of the fifty-fifth embodiment, the HMGA-binding nucleic acid comprises a section Helix C2 and a section Box A2, wherein a nucleotide G is arranged between the 3' end of the section Helix C2 and the 5' end of the section Box A2.
In a fifty-seventh embodiment of the seventh aspect, which is also an embodiment of the fifty-fifth or fifty-sixth embodiment, the central section N, of the HMGA-binding nucleic acid comprises four nucleotides, wherein 1Vc is preferably GAUG<
In a fifty-eighth embodiment of the seventh aspect, which is also an embodiment of the fifty-fifth, fifty-sixth and fifty-seventh embodiment, the HMGA-binding nucleic acid comprises a section Helix B1 and a section Helix B2e In a fifty-ninth embodiment of the seventh aspect, which is also an embodiment of the fifty-eighth embodiment, the sections Helix B1 and Helix B2 of the HMGA-binding nucleic acid comprise individually and independently of one another in each case five nucleotides, wherein preferably the section Helix B1 is hybridised with the section Helix B2a In a sixtieth embodiment of the seventh aspect, which is also an embodiment of the fifty-eighth or fifty-ninth embodiment, a nucleotide sequence comprising two nucleotides Nj is arranged between the 3' end of the section Helix Bl and the 5' end of the section Box Al of the HMGA-binding nucleic acid, wherein Nj is preferably AG.
In a sixty-first embodiment of the seventh aspect, which is also an embodiment of the fifty-eighth, fifty-ninth and sixtieth embodiment, a nucleotide G is arranged between the 3' end of the section Box A2 and the 5' end of Helix B2 of the HGMA-binding nucleic acid.
In a sixty-second embodiment of the seventh aspect, which is also an embodiment of the fifty-fifth, fifty-sixth, fifty-seventh, fifty-eighth, fifty-ninth, sixtieth and sixty-first embodiment, the HMGA-binding nucleic acid comprises a section Helix Al and a section Helix A2, In a sixty-third embodiment of the seventh aspect, which is also an embodiment of the sixty-second embodiment, the sections Helix Al and Helix A2 of the HMGA-binding nucleic acid comprise individually and independently of one another in each case six nucleotides and preferably the section Helix Al and the section Helix A2 are hybridised with one another.
In a sixty-fourth embodiment of the seventh aspect, which is also an embodiment of the sixty-second and sixty-third embodiment, a nucleotide sequence comprising two nucleotides Ni is arranged between the 3' end of the section Helix Al and the 5' end of the section Helix B1, wherein IV;1 is preferably CA.
In a sixty-fifth embodiment of the seventh aspect, which is also an embodiment of the sixty-second, sixty-third and sixty-fourth embodiment, a nucleotide A is arranged between the 3' end of the section Helix B2 and the 5' end of the section Helix A2.
In a sixty-sixth embodiment of the seventh aspect, which is also an embodiment of the fifty-fifth to sixty-fifth embodiment, the sections Helix Cl and Helix C2 comprise in each case three nucleotides, wherein preferably the section Helix Cl and Helix C2 are hybridised with one another.
In a sixty-seventh embodiment of the seventh aspect, which is also an embodiment of the sixty-sixth embodiment, the HMGA-binding nucleic acid has the following structure:
Helix Al-Ni-E lg~ BI-Nj- Box A1-A-eHelix C1~-N~ ~Helix C2~-e m o m o e m o o ~
G Box A2 -G-~elix B2-A -Helix A2 wherein Ni = two nucleotides, preferably CA;
N; = two nucleotides, preferably AG;
N, = four nucleotides, preferably GAUG;
the sections Box Al and Box A2 are in each case selected individually and independently of one another from the group comprising the sequences GGGCG, GGGUG and GGGAG;
the sections Helix Al and Helix A2 comprise in each case individually and independently six nucleotides, which are preferably hybridised with one another;
the sections Helix Bl and Helix B2 comprise in each case individually and independently five nucleotides, wherein preferably the section Helix B1 and the section Helix B2 are hybridised with one another, and the section Helix Cl and Helix C2 comprise in each case individually and independently three nucleotides, wherein preferably the sections Helix Cl and Helix C2 are hybridised with one another.
In a sixty-eighth embodiment of the seventh aspect, which is also an embodiment of the sixty-seventh embodiment, the HMGA-binding nucleic acid comprises a sequence which is selected from the group including SEQ. ID, No. 12.
In a sixty-ninth embodiment of the seventh aspect, which is also an embodiment of the second to sixty-seventh embodiment, the nucleic acid is one that binds to transcription factors, in particular transcription factors comprising an AT hook.
According to the invention the object is achieved in an eighth aspect by a nucleic acid, which binds to a transcription factor comprising an AT hook, wherein the nucleic acid has a structure according to the seventh 5 aspect.
In an embodiment of the composition according to the sixth aspect the L-nucleic acid is a nucleic acid according to the seventh aspect.
In an embodiment of the use according to the first aspect the L-nucleic acid is a nucleic acid according to the seventh aspect.
In an embodiment of the method according to the second aspect the L-nucleic acid is a nucleic acid according to the seventh aspect.
In an embodiment of the use according to the third aspect the L-nucleic acid is a nucleic acid according to the seventh aspect.
In an embodiment of the method according to the fourth aspect the L-nucleic acid is a nucleic acid according to the seventh aspect.
According to the invention the object is achieved in a ninth aspect by a method for screening an HMGA antagonist or HMGA agonist, comprising the following stepso - providing a candidate HMGA antagonist and/or a candidate HMGA agonist, - providing a nucleic acid according to the seventh aspect, providing a test system which delivers a signal in the presence of an HMGA antagonist and/or an HMGA agonist, and - determining whether the candidate HMGA antagonist is an HMGA antagonist and/or whether the candidate HMGA
agonist is an HMGA agonist.
According to the invention the object is achieved in a tenth aspect by a method for screening an HMGA agonist and/or an HMGA antagonist, comprising the following steps:
- providing an HMGA immobilised on a phase, preferably a solid phase, - providing a nucleic acid according to the seventh aspect, preferably a nucleic acid according to the seventh aspect which is labelled, - adding a candidate HMGA agonist and/or a candidate HMGA antagonist, and - determining whether the candidate HMGA agonist is an HMGA agonist and/or whether the candidate HMGA
antagonist is an HMGA antagonist.
In an embodiment of the tenth aspect it is envisaged that the determination is carried out by testing whether the nucleic acid is replaced by the candidate HMGA agonist or by the candidate HMGA antagonist.
According to the invention the object is achieved in an eleventh aspect by a kit for the detection of HMGA, comprising a nucleic acid according to the seventh aspect.
According to the invention the object is achieved in a twelfth aspect by an HMGA antagonist which is obtainable by a method according to the tenth aspect.
According to the invention the object is achieved in a thirteenth aspect by an HMGA agonist which is obtainable by a method according to the tenth aspect.
According to the invention the object is achieved in a fourteenth aspect by a complex comprising an HMGA protein and a nucleic acid according to the seventh aspect.
The present invention is based on the surprising result that, contrary to the received opinion in the prior art, it is possible to use L-nucleic acids and in particular spiegelmers in order to address intracellular target molecules. The intracellular target molecules are preferably target molecules which are present in a cello The properties inherent in the functional L-nucleic acids due to their structure of L-nucleotides, such as high specificity of the interaction with their target molecules with at the same time a high stability and absence of toxic or immunologically active decomposition products when the L-nucleic acids are used in biological systems and in particular in the animal and human body, does not however allow the cellular mechanisms to be utilised in order, as in the case of intramers, for L-nucleic acids to be coded by a plasmid or generally a vector and thus provide the actually functional nucleic acid by the intracellularly occurring process of transcription.
This inescapable dilemma is solved by the present invention: functional L-nucleic acids and in particular spiegelmers can be transported through a cytoplasmic membrane while retaining their specificity as regards their binding to their target molecule, and their activity. This permeability of the functional L-nucleic acids is inherent in spiegelmers and can be enhanced still further by the use of delivery vehicles or delivery techniques. Without hereinafter wishing to be specific in this matter, the present inventors start from the assumption that functional L-nucleic acids can per se overcome the cytoplasmic membrane, and with the participation of endosomal transport mechanisms in overcoming the cytoplasmic membrane, are able to free this from the vesicle structures that are thereby formed, with the adoption of a two-dimensional or three-dimensional structure, which allows the specific interaction of the functional nucleic acid with its target molecule> With the technical teaching disclosed herein, the principle developed for aptamers of utilising intracellular transcription mechanisms in order to create aptamers in the cell is intentionally avoided, and for the first time means are provided for using functional L-nucleic acids and in particular spiegelmers in cells.
As employed herein in a preferred embodiment, the term functional nucleic acids denotes those nucleic acids that are different from structural, in particular naturally occurring structural nucleic acids such as rRNAs or that are different from coding nucleic acids such as mRNAs. In particular functional nucleic acids are nucleic acids which, on account of their two-dimensional and/or three-dimensional structure, are able to bind to target molecules. In a particularly preferred embodiment the binding to the target molecule takes place not by hybridisation or base pairing on the basis of Watson-Crick base pairings or a Hoogsteen base pairing. Particularly preferred functional nucleic acids are aptamers and spiegelmers, A L-nucleic acid is in a preferred embodiment a nucleic acid that is completely, substantially or partly synthesised from L-nucleotides. It is particularly preferred if the L-nucleic acid consists completely of L-nucleotides. The term "substantially" denotes in this connection an embodiment in which that part of the L-nucleic acid which is responsible for the interaction with the target molecule, or that part which mediates the binding to the target molecule, consist of L-nucleotides or is synthesised from these, As used herein, a functional L-nucleic acid is a functional nucleic acid which is completely, substantially or partly synthesised from L-nucleotides>
The synthesis of L-nucleic acids is known to the person skilled in the art in this field and is described for example in Nolte et a1o, Nat. Biotech, 14, 1116-1119, 1996.; and Klussmann et a1., Nat. Biotechnol, 14, 1112-1115, 1996.
The basic process for the production of aptamers is 5 described for example in Tuerck et aI. Science, 248, 505-510, 1990; or Ellington et a1. Nature, 346, 818-822, 1990, while the basic process for the production of spiegelmers is described for example in Nolte et a1., Nat. Biotech, 14, 1116-1119, 1996 õ or Klussmann et al., Nat. Biotechnol, 14, 10 1112-1115, 1996. Spiegelmers are thus aptamers which consist of L-nucleotides instead of D-nucleotides. In connection with the production of aptamers and spiegelmers, the term target molecule denotes that molecule which is used in the selection process to produce aptamers and 15 spiegelmers, or denotes that molecule which is ultimately bound by the aptamer or the spiegelmer.
In a preferred embodiment an intracellularly active agent is a chemical compound which when present in a cell is able 20 to bind to a molecule. In this connection it is particularly preferred if the cell is a cell that exists isolated in a tissue or an organ, but preferably not in a human or animal body. If the intracellularly active agent is a spiegelmer, then preferably it is an intracellularly 25 active agent if it is able to bind to an intracellular target molecule. Alternatively the spiegelmer is an intracellularly active agent if it is able to bind to its target molecule under conditions such as exist in a cell<
Tests in order to determine these properties are known to 30 the person skilled in the art in this field, and include for example equilibrium binding assays under buffer conditions such as exist intracellularly (ionic strength and solute composition, pH, temperature), as disclosed in Example 1.
In a preferred embodiment the target molecule of the L-nucleic acid, in particular of the functional L-nucleic acid, is an intracellular receptor. An intracellular receptor, as used herein, is preferably a chemical compound or a chemical structure or respectively a part thereof, with which the functional L-nucleic acid interacts, and is preferably a compound or structure to which the functional L-nucleic acid binds, wherein the intracellular receptor, i.e. the chemical compound or the chemical structure or respectively a part thereof, is present intracellularly, i.e. is present in a cell, as is preferably described in the preceding paragraph. In this connection it is possible within the scope of the present invention for the intracellular receptor to be the target molecule in the creation of the functional nucleic acid, in particular the functional L-nucleic acid.
In one embodiment the term "receptor" denotes any interaction partner, preferably a specifically binding interaction partner of the functional nucleic acid, i.e.
denotes an interaction partner interacting with the functional nucleic acid, which has a specific spatial structure, charge distribution, hydrophobicity distribution, etc. In a particularly preferred embodiment the interaction partner corresponds to the target molecule of the functional nucleic acid, as was used in the creation of the functional nucleic acid. In this connection it is within the scope of the present invention that a receptor can also be different from the target molecule used in the creation of the functional nucleic acid, though the specific interaction is due to a cross reactivity of the functional nucleic acid between the interaction partner and the target molecule used in the creation of the functional nucleic acid.
In a preferred embodiment the term "intracellular receptor"
denotes a receptor that is present in a cell, or a receptor that can be present in a cell, that occurs under natural circumstances in a cell, or that under such circumstances exist in a cell. In this connection it is particularly preferred if the cell is a cell that occurs isolated in a tissue or an organ, but preferably not in a human or animal body. As used herein, the term "intracellular receptor"
however also denotes a receptor that is present under conditions such as exist in a cell.
In a preferred embodiment the term "cell" denotes a cell which is selected from the group comprising prokaryotic and eukaryotic cells. Preferably the eukaryotic cell is selected from the group comprising fungal cells, plant cells, animal cells and human cells. In an alternative embodiment the term cell generally denotes herein a compartment bounded by a phospholipid double membrane, which in a preferred embodiment corresponds to a cytoplasmic membrane, and which is separated by the membrane from the surroundings. The separation from the surroundings is in this connection not a complete separation, but allows an energy transfer and a mass transfer (substance exchange) between the cell and the surroundings. The mass transfer is preferably restricted.
In the case where the cell is separated from the surroundings by a cytoplasmic membrane or by a membrane similar to a cytoplasmic membrane, the restriction of the mass transfer is defined by the transport properties of the membrane. In one embodiment the term cell herein thus also includes vesicles and/or compartments of a prokaryotic or eukaryotic cell as defined herein, which in turn are present or may be present both within a prokaryotic or eukaryotic cell, as well as outside such a prokaryotic or eukaryotic cell, for example as vesicles or parts of a prokaryotic or eukaryotic cell surrounded by a cytoplasmic membrane, which in one embodiment can be present in a body fluid. In a preferred embodiment, in a cell according to the second alternative embodiment it is envisaged that the conditions within such a cell correspond substantially to those occurring in a prokaryotic or eukaryotic cell, in particular as regards the factors which influence the binding of the functional nucleic acid to its target molecule, In a preferred embodiment the body fluid is selected from the group comprising blood, urine, liquor (anatomical fluid), lymph fluid, serum, plasma, vaginal secretions, saliva and sperm.
In one embodiment the receptor is defined by its function in a cell. Accordingly the receptor can be selected from the group comprising molecular receptors, enzymes, metabolic intermediates, signal peptides, chaperone molecules and intracellular structures such as for example ribosomes, mitochondria, elements of the cytoskeleton such as for example tubulin and actin filaments, endosomal particles, lysosomes, other intracellular structures such as vesicles, in particular intracellular vesicles. As used herein the term molecular receptor denotes in a preferred embodiment a molecule which accepts information and transmits this within a cell, a tissue, an organ or an organism. The information is typically mediated by a molecule which interacts with the molecular receptor. As a result of the interaction the molecular receptor is able to generate a signal. Such a signal can be based on the change in the confirmation and/or of the activity of the receptor or can be manifested therein. The signal itself is able to transmit in another form the information received or processed by it. As a result of the change in the confirmation or activity of the molecular receptor, the signal can preferably be a chemical, biochemical or an electrical signal. Preferably the molecular receptor is part of a reaction cascade, and more preferably part of a signal cascade. The information transmitted by a molecular receptor can be quantitative and/or qualitative information, for example concerning the presence of a compound and/or its concentrationo In a preferred embodiment the term "metabolic intermediates" denotes all those compounds which, due to metabolic activities in a cell, occur as constituents of catabolism as well as of anabolism.
In a further embodiment the receptor is defined by its chemical nature. Preferably the receptor is selected from the group comprising polypeptides, carbohydrates, nucleic acids, lipids and combinations thereof. As used herein, 5 the term polypeptide preferably denotes any polymer consisting of two or more amino acids. Preferably the amino acids are L-amino acids, though D-amino acids may also be used within the scope of the embodiment. As used herein the term "nucleic acids" preferably denotes a 10 polymer of two or more nucleotides or nucleotide analogues which are known to the person skilled in the art in this field, wherein the nucleotides may be either D-nucleotides or L-nucleotides or mixtures thereof. Preferred combinations include glycosylated polypeptides and 15 glycosylated lipids.
A particular group of intracellular receptors are transcription factors and DNA-binding proteins which bind to an AT hook. Examples of transcription factors are given 20 in the following table 1:
Table 1: Transcription factors gamma)OBP 14 3-3 epsilon 70-75K protein (STAT5A)4 14 3-3 zeta 80-90K protein 120-kDa CRE- 50-55K protein AAF
binding protein 53BPI ABF-1 A-DA2 APm2alphaE I=3achlt ADA3 AP 2beta Bach2 A ,4-NF1 AP-2garnrna BAF155 AFP1 AP-2rep BAF47 AhR AP-3 (1) BAF53a AhR:Arnt AP-3 (2) BAF60A
AI I N3 AP-4 Barhll Ai I s AP-5 Earh12 AIRE APC Barxl AKNA AR Barx2 ALF Arnt Bcim3 ALL 1 Arnt (774 AA form) BCL-6 alpha-CBF ARNT2 be4a-catenin alpha-CF2b ASC-2 Bin1 alphaH ASPP1 BMAL2 alphaH2-alphaH3 ASPP2 13-Myb Alx-4 ATBFI-B BP1 aNVEF-2 ATF BP2 AML1 a ATF2 Brachyury AML1 b ATF-2 BRCA1 AIVIL1 c ATF-2:c-Jura BRCA2 AML1 eltaN ATF3 BRG1 AML2 ATF3 deltaZlP ERIP1 AML3 ATF4 Brm AML3a ATF5 BTEBI
AML3b ATF6 BTEB2 P.MY-1 L ATF-a BTEB3 A-Myb ,4'TF adelta BTEB4 ANF AT M B-TF I I
AP-1 ATPFI C/EBPalpha AP-2a9phaA Bach1 C/EBPbeta C/EI3Pdelta CIITA CtBP2 C/EBPepsllon cmJun CTCF
C/EBPgamma c-Jun:Jun CTF
c-abl CUM2 CTF-2 CACCC-binding factor CLOCK Cl F-3 CAR cmMyb CTF-5 CAR:R<R-alphe c-Myc CTF 7 Cart-I C-Myc 1 CUP
CBAF cpMyc:6Viax CUTLI
CBF (4) CNBP CUTL2 CBF (5) CoS Cx CBP COIJP-TF1 cyclln A
CCAAT- OOUP-TF2 cyclira T1 binding factor CP1A cyclin T2 CCF CP1C cyclln T2a CCG1 CP2 cyclin T2b CCK-la CPBP DAP
CCK-1 b CPE binding protein AX1 Cdc5 ORF-BPe DBF4 cdk2 c-Rel DBP
cdk9 c-Rel:RelA DbpA
Cdx 1 CREMalpha DbpAv CDX2 CREST DbpB
Cdx 4 CRF DCoHm c-Fts-1 Crx DDB
c-Fts-2 CSA B-1 c-Fos CS13Pm1 DEC1 ChCh CSEN DEC2 CHOP-10 c-Ski DEF
Chx10 Ct13P1 deltaCREB
deftaFosl3 E2F EIIaE Cbeta deltaMax E2F+E4 EivF
DeltaN p63beta E2F~p107 EKLF
DeltaN p73afpha E2F-1 ELF-I
DeltaN p73beta E2F-1:IOP-1 ELFR
DeltaN p73gamma E2F-1.DP-2 efios DeftaNp63afpha E2F-2 Efk-1 DeftaNp63garnma E2F-3a Emx-1 Derrvao-1 E2F-4 Emx-2 F-1 E2F-4, P-1 En-1 DF-2 E2F-4:DP-2 En-2 DF-3 E2F-5 ENFf-binding protein Ix-1 E2F-6 ENK fF 1 Dlx-2 E2F-7 EP400 fx 3 E47 EPAS 1 fx-4 (long isoform) E4BP4 Epicardin Ix-4 (short isoforrn) E4F epsifonF1 -x-5 E4FI ER alpha Ix-6 E4TF2 ER-alpha:ER-beta P 1 E7; H1'V-16, Papilloma ER-beta DP-2 Virus type 16 ER-betal DPBF EAR2 ER-beta2 RfL1 EBF ER-beta3 DS I F EBP-80 ER-beta4 DSIF-p14 EC2 ER beta5 SIF-p160 EF1 ERF
DTF Egr-1 Erg-1 1J1C1 Egr-2 Erg-2 DUX2 Egr-3 ERM
DUX3 Egr-4 ERRI
lJX4 EIIaE-,4 ERR2 E EIIaE-13 ERR3 E12 EIIaE Calpha EFZR3-1 ERR3m2 FOXBI F X01 a ERR3-3 F XC1 F X01 b ERRalphal FOXC2 FOX02 ESE-1 FOXD1 F X03a ESE-la FOXD2 F X03b ESE-1 b FOXD3 F X04 ESE-2a FOXEI FOXP2 ESE-2b FOXE3 FOXP3 ESE-3a FOXF2 Fra-1 ESE-3b F XG1 a Fra-2 ESXR1 F XG 1 b FTF
ETF F XG1 c FTS
Efs-1 deltaVll F XH1 FXR
Evi-1 F X11 FXReRXR-elpho EVXI F XJ 1 e FXR-alpha EZF-2 F XJ 1 b FXR-befal EZH1 FOXJ2 (long isoform) FXR-beta2 EZH2 FOXJ2 (short isoform) G factor F2F FOXJ3 G6 fector factor 2 FOXK2a GABP
FBP FOXK2b GABP-alpha f-EBP FOXK2c GABPB
FEV F XL1 GAI3P-betal Fgf3 FOXL2 GABP-beta2 FKBP59 FOXMIa GAF
FKHL13 F XM 1 b gammaCAAT
FKHRLIP2 F XfVi1c gamrnaCAC1 FKLF FOXN1 gammaCAC2 FIi-1 FOXN2 GATA-1 FosB FOXN3 GATA-2 GATA-3 HAF FiiNF-A
GAT,4-4 FIAN 1 HiNF-B
GATA-5 HAND2 FliNF-C
GATA-6 F8E9 HiNF-Gbx1 FI AC1 HiNF 3 Gbx2 HDAC2 HiNF-E
GCF HDAC3 HiNF-P
GCMa HDAC4 HIP1 GCN5 HDAC5 Hli/-EP2 GCNF-1 hDaxx Hlf GF1 HDBP2 HLTF (Met123) GKLF Fleet-inducing factor HLX
GLI2 HEE1-p67 HMG I
GL13 HEE1-p94 HMG I(Y) GLIS2 HEF-IB HfViG Y
GR-alpha HENI HMGImC
GR-beta HEN2 HMXI
GRF-1 HES-1 HNF-lalphe A
Gsc HES-2 HRIF lalpha-B
Gscl Hesxl HNF lalpha C
GTdC Hex HNFm1 bete-A
GTmIIA Heyl HNF 1 bete B
GT-I I13alpha Hey2 HNFm1 beta-C
GT-lil3bete HeyL HNF-3 H1TF1 HFH-1 HNF-3elpha HITF2 HIC-1 HRIF 3bata FIITF2A Hlc-5 HiVF-3gamma H4TF 1 HIFm1 HNF-4 H4TF-2 HIF 1 alpha HNF-4alpha HNF-4alphal HOXC11 IB1 HNFm4alpha2 HOXC12 IBP-1 Hd<9F-4alpha3 HOXC13 CER-II
FINF-4alpha4 HOXC4 CER-Ilgarnma HNF-4alpha7 HOXC5 d1 FiNF-4gamma HOXC6 d1 H
HRIF-6alpha HOXC8 d2 hnRNP K HOXC9 d3 HOX1 1 HOX 10 d3 I Holr-1 HOXAIO PL2 FIOX 13 gPE-1 HOXA11 HOXD3 gPE 2 HOXA13 HOXD4 gPE-3 HOXA2 HOX 6 k-1 HOXA3 HOXD9 kappaB
HOXA4 Hp55 kappaB alpha HOXA5 Hp65 kappaB-beta HOXA6 HPX42B kappaBR
HOXA7 HrpF II-1 RF
FiOXA9E HSF L-6 RE-BP
HOX81 HSFI (long) II-6 RF
HOXE13 HSFI (short) 1NG1 HOXE2 HSF2 NG1 b HOXB3 HSF4a RISAF
HOXB4 HSF4b PCS-BF
HOX85 HSF4c PF1 FIOX136 hsp56 PF1:Pbx HOXB7 Hsp9O RF 1 HOXB8 A-1 RF-1:C/EBPbeta HOXB9 ASPP RFm2 RF-4 KR3 Lmol RF-5 KRFm1 Lmo2 RF-6 KRN Lli/d03 RF-7B Ku autoantigen LMXIB
RF-7H Ku70 LmMyc 1(long form) RF-8 Ku80 L-IVIyc-1(short form) RF-9 KUP L-IVdyc-2 rlE LAF-4 LlJNm1 RX-1 LANA; KSHV, Kaposi's LUN-2 RC2a sarcorrua-associated LXR-alpha Irx-3 herpes virus LXR alpha:RXR-alphe rx-4 (herpes virus 8) LXRmbete SGF-1 LBP-1 LXR-beta:R3CR alphe SGF-3 LBP-la Lyl-1 SGF-3alpha LBP-ld M factor sl-lalpha LBP-32 Mad1 TF LBP-9 Maf TF-1 LBXI MafB
TF-2 LCR-F1 MafF
JRF LEF-1 MafG
JunB LEF-1 E MafG:MafG
Jon13:Fra-1 LF-A1 MafK
JunB:Fra-2 LHXI MAML1 JunD LHX2 MASH-1 Jun :Fra-2 LHX3a Max kappaY FaKtor LHX3b IViex1 KBP-1 LHX5 Max2 KER1 LH3C6.1a MAZ
KER-1 LHX6.1 b IVIAZi KLF7 LITAF 6ViBF9 Koxi LKLF MBF2 MBF3 IVliz-1 NERF-2 IVISP-1 (1) MLX Net IVISP-1 (2) IUIM-1 Neuro 1 MBP-2 MondoA NEtJR -2 MECP-2 MR NF III-a MEF-2A MRF-2 NF III c MEF-2E1 lUdsx-1 NF III-e MEF-2C Msx-2 iVF-1 MEF-2C/delta32 IVITA1-L 1 NF-4FA
IViEF-2C/delta3 MTB-Zf NF-4FB
MEF-2C/delta3,32 IUITF-1 NF-4FC
MEF-21D00 mtTFA NF-AB
MEF-2DOB Mxi1 NF-ATI
MEF-2 A Myf-3 NF-AT1 MEF-2DA'O Myf-4 NF-AT2 MEF-2DAB Myf-5 NF AT2-alpha MEF-2 A'S Myf-6 NF-AT2-beta Meis-1 Myocardin, Splice Form NF-AT3 Meis-2a 1 NF-AT4 Meis-2b Myo NF-AT5 Meis-2c MyoD:E12 NfbetaA
Meis-2d MyT1 NF-CLEOa Meis-2e MZF-1 NF-CLE b Meis-3 NC1 NFdeItaE3A
Melm13 NC2 NFde1taE3B
VVIeox1 NCORI NFdeltaE3C
Meoxla NCOR2 NFdeItaE4A
Meox2 NCX NFdeltaE4S
MHox (K-2) NELF NFdeltaE4C
Mi F-1 NERF Nfe MI'fF NERF-la NF-E
IUIIXLI NERF-1 b NF-E2 NF-E2 p45 NF-Y NRF
NF-E3 NF-YA Nrf1 NFE-6 VZ9F-Zc NRF-1 NF-Gma I<9F 2z NrT'1:iViafG
NF-GMb NGN3 Nrf1:k/IafK
NFI/CTF NF4P-1 Nrf2 NFIA NHF-2 Nrf2:MafG
NF113 NHP3 Nrf2:MafK
NF-IL-2 NHP4 NRF-2betal NF-IL-26 Nkx2-1 NRF-2garnmal NFIX Nkx2-2 NO
NF-jun Nkx2-3 Nrf3:MafK
NF-kappaB Nkx2-5 NRL
NF-kappaB(-slmllar) Nkx2-8 NRSF
NF-kappaBi Nkx3-1 NRSF Form 1 IVF-kappaB 1 precursor ti9kx3-1 vi NRSF Form 2 NF-kappaB2 Nkx3-1 v2 NTF
NF-kappaB2 (p49) Nkx3-1 v3 Nur77 NF-kappaB2 precursor Nkx3 1 0 NlJRR1 RIF-kappaE 1 Nkx3-2 OAZ
NF-kappaE2 N kx6-1 OC-2 NF-kappaE3 Nkx6-2 OCA-B
NF MHCIIA Nmi Octa factor NF-MHOI IB N-Myc Octamer IZIF-muE1 N-Oct-2alpha binding factor NF-rnoE2 N Oct 2beta Oct-B1 NF-muE3 N-Oct-4 oct-B2 NF-S NORI oct-B3 IVF-X1 NPA3 Oiigol NF-X2 NPAS 1 Otx1 NF-X3 NPAS2 Otx2 NF-Xc NP- I CI I Otx3 OZF Pax-3 PbxlA:HoxD4 p107 Pax-3A Pbxia:IPFI
p130 Pax-313 Pbx1 b p160MBP Pax-4a PbxlB:HoxA5 p28 Modulator Pax-5 PbxlB:HoxB7 p300 Pax-6 PbxlB:HoxB8 p38erg Pax-6 / Pd-5a PbxlB:HoxC8 p40x; HTLV-I, T-cell Pax-7 PbxlB:HoxD4 Lymphotropic virus Pax-8 Pbxlb:PKNOXI
type I Pax-8a Pbx2 p45 Pax-8b Pbx2:FioxB8 p49erg Pax-8c Pbx2:Hoxc6 p50:c-Rel Pax-8d Pbx2:PKNOX1 p53 Pax-8e Pbx3a p55 Pax-8f Pbx3a:Floxc6 p55erg Pax-9 Pbx3b p63 Pbx PC2 p63alpha Pbxi PC4 p63beta Pbxl: Hoxl31 PC5 p63delta Pbx1:HoxB2 PCAF
p63gamma Pbxl:hioxB3 PDEF
p65delta Pbxl:HoxB4 PEA3 p73 Pbxl:HoxB5 PEBP2alpha p73alpha Pbxl:HoxB6 PEBP2beta p73beta Pbxl:hioxl38 PGC-1 p73delte Pbx1:PKN X1 PITXI
p73epsilon Pbxl:Tcl3 PITX2 p73eta Pbxla PITX2A
p73gamma PbxlA:HoxA5 PITX2A: Ctlkx2.5 p73kappa Pbxia:Hoxb7 PITX2B
p73zeta Pbxla:Hoxb8 PITX2B:Nkx2.5 Pax-1 Pbxla:Hoxc6 PITX2C
Pax-2 Pbx1 A, HoxC3 Pll X2C: Nkx2.5 PITX3 P U5F1 PU.1 PKNOXI P U5F1A PuF
PKNOX2 POU5F1B Pur factor PLAGLI POU5FIC pX; HBV, Hepatitis B
PLAGL2 POU6F1 Virus PLZF PPAR-alpha PXR-1 PML PPAR-alpha:RXR- PXR-1: R-alpha PML-3 alpha PXR-1:RXR-beta Pmx2a PPAR-beta PXR-2 Pmx2b PPAR-gammal RI
PNR PPAR-gamma2 R2 P -B PPAR-gamma3 RAR alpha Pontin52 PPAR-gamma4 RAR-alpha:RXR-alpha P U1F1 PPUR 12AR-alphae R-beta POU2F1 PR RAR-alpha: R-P U2F2 PR A gamma POU2F2 ( ct-2.1) PR B RAR aipha1 POU2F2B pRb R alpha2 POU2F2C PRDI-BFI RAR-beta POU2F3 PR I-BFc RAR-beta:RXR-alpha POU2F3, soform a Preb RAR-beta2 POU2F3, soform d1 Prop-1 RAR-gamma POU2F3, soform d2 PROXI RAR-gamma:RXR-POU3FI PSEI alpha POU3F2 P-TEFb RAR-gammal POU3F2 (N-Oct-5a) PTF Rb:E2F-1. P 1 POU3F2 (N-Oct-5b) PTFalpha RI3P60 POU3F3 PTFbeta RBP-Jkappa POU3F4 PTFdelta Ref- 1 P U4F1(I) PTFgamma ReIA
P U4F1(s) Pu box binding factor Rell3 P U4F2 Pu box binding factor REVERB-alpha POU4F3 (BJA-B) REVERB-beta RFX1 SHOX2b Smad7 RFX1:RFX2 SHOXa Smad8 RFXI:RFX3 SHOXb SMIF
RFX2 SHP Sna RFX3 SI I I-p910 SnoN
RFX4 SIII p15 Sox1 RFX5 SIIImp16 Soxi O
RFX5:RFXAP:RFXANK SImi Soxl 1 RFXANK SIIVi2 Sox12 RFXAP SIPI Soxl 3 RFX-B-delta5 Six-I Sox14 RF-Y Six-2 Sox17 R Ralpha1 Six-3 Soxl 3 R Ralpha2 Six-4 Sox2 RORalpha3 Six-5 Sox20 RORbeta Six-6 Sox2l RORgamma SKiP Sox3 Rox SLUG Sox4 RP58 Smadl Sox5 RPFI Smad2 Sox7 RPGalpha Smad2 (437 Sox6 RREB-1 amino acids) Sox9 RSRFC4 Smad3 SpI
RSRFC9 Smad3:Smad4 Sp2 RVF Smad4 Sp3 RX Smad4delta3 Sp4 RXR-alpha Smad4delta4 Spi-B
RXR-beta Smad4delta4-6 SPT16 RXR-gamma Srnad4delta4-7 SRC-1 SAP-1 a Smad4delta5-6 SRC-3 SAP-lb Smad4delta6 SRCAP
SF-1 Smad5 SREBP-la SHOX2a Smad6 SREBP-lb SREBP-1c TAF(ll)100 TBX19 SREBP-2 TAF(ll)125 TBXIA
SRE-ZBP TAF(II)135 TBX1 B
SRF TAF(I I)170 TBX2 SRF:SRF TAF(II)16 TEX20 SRY T,4F(II)20 Tbx22 SSRP1 TAF(II)250 TBX3 (722 Staf-50 TAF(II)250 elta amino acids) STAT1 TAF(II)23 TBX3 (742 STAT1 eSTAT1 TAF(I1)30 amino acids) STAT1:ST,4T3 TAF(I I )31 TBX4 STATlalpha TAF(II)55 TBX5 (long isoform) STAT1 beta TAF(II)70-alpha TBX5 (short isoform) STAT2 TAF(I I)70-beta Tbx5:Nkx2,5 STAT3 TAF(II)70-gamma TBX6 STAT3:STAT3 TAF-I TCF
STP,T58 Tal-1 TCF-1 A
STAT5B:STAT5B Tal-1 beta TCF-113 STAT6 Tal-2 TCF-1 C
SXR TAR factor TCF-1 SXR:R -a9pha tat; HIV-1, l"CF 1E
SYT Immunodeficiency virus TCF-I F
T3R-alpha: type 1 TCF-1 G
T3R-alpha:RXR-alpha Tax; HTLV-I, 7'-cell TCF-2aipha T3R-alphal Lymphotropic TCF-3 T3R-alpha2 virus type I TCF-4 T3R-betal T-bet TCF-4(K) T3R-beta2 TBP TCF-4B
TAF(I)110 Tbr-1 TCF-4E
TAF(I)46 TBR2 TEF
TAF(1)63 TBX18 TEF-1 TEF-2 TFIIFi-M 15 TRF (2) 'fEF-3 TFI IH-p34 TRRAP
TEF-5 TFI I FI-p44 TllVISI-TEL1 'fFIH-p62 TxRE BP
Tel-2a TFI IFI-p3 TxREF
Tel-2b TFI IHmp3 ,CAK UBF
Tel-2c TFIH-p90 UBP-1 Tel-2d TFI I-I IJEF-I
Tel-2c TFI I IA UEF-2 TeI-2f Tf-LFI IJEF-3 TFE3 Tf-LF2 UEF-4 TFEE-A TGIF USF1:USF2 TF11,4 TGT3 USF2b TFI IA-alpha/beta TIEG-1 Vav precursor (main form) TIF1a Vax-2 TFIIA-alpha/beta TIF1 g VDR
precursor (sobsidiary form) TIF2 ilITF; Vaccinia virus/, TFIIA-gamma TLEI Homo sapiens TFIIB TLX Vpr; FIIV-1, TFII TLX3 Immunodeficiency virus TFIIE TMF type I
TFIIE-a9pha TR2 11 WBSCR14 TF I I E-beta TR2-5 WSTF
TF I I F TR2-9 VVT'I
TFIIF-a9pha TR4 WT1 I'FIIF-beta TRAP WTI -KTS
TFIIH TREB-1 WT1 -del2 TF11H* TRE13-2 VVT1 -KTS
TFI I H-CAK TREB-3 W'T1 de12 'fFIIH-cyclin H TREFI XBP-1 TFIiH MAT1 TREF2 xVi/9V
YBm1 ZF2 ZNF-20 YLm1 ZFX ZNF33a yy1 ZFY ZNF35 ZEE (1124 AA) ZNF11s ZNF7 ZEB (1154 AA) ZNF124 ZNF76 ZER6 p52 ZNF133 ZNF83 ZER6 p71 ZNF143 ZNF85 A further group of intracellular receptors are the intracellular target molecules listed in the following Table 2.
Table 2: Intracellular target molecules "long-chain" fatty Acetyl-CoA malate-citrate Amyloid precursor protein acid CoA ligase synthase Ankarin "major basic" protein Acetylglucosarninyl Arginase "mixed function" transferase Argininosuccinate oxygenase Acetylspermine synthetase 11 R-hydroxy6ase (EC deacetylase Argininosuccinate lyase 1.1 4.15A) Acetyl transcylase Aromatase 9 3mhydroxylase Aconitase Aryisulfatase 1 -acylgiycerol-3- Actin Aspartate phosphate acyl transferase Adenosine deaminase aminotransferase 2,3- Adenosyl homocysteine Aspartate oxidosqualene ianosterol hydrolase transcarbamoylase cyclase Adenosyl rnethionine ATPase 21 -steroid hydroxylase decarboxylase ATP diphosphohydrolase (EC 1.14,99,10) Adenylate cyciase bc/ 2 oncogene protein 24,23-sterol reductase Adenylate deaminase Connective tissue-3-hydroxybutyrate Adenylate kinase activating peptide dehydrogenase Adenylo-succinate lyase C5a-inactivating 3-ketothiolase Adenylo- succinate factor synthase 3-R-hydroxysteroid Alanine aminotransferase Calcitonin dehydrogenase Aldolase Calmodulin (EC5.3.3.1) Aldose reductase Calpain I
5'mnucleotidase Alkaline phosphatase Calreticulin 8-oxoguanosine Alcohol dehydrogenase Carbamoyl phosphate deglycosylase Amidophosphoribosyl synthetase abi oncogene protein amine transferase Carbonate anhydrase Acetolactate synthase AMP Casein kinase 1 Acetylcholine esterase phosphodiestererase Casein kinase 2 Acetyl-CoA carboxylase Amyloid A4 protein Catalase Catechol ihydrouracil Glycerol phosphate methyltransferase dehydrogenase acyltransferase Cathepsin Dioxygenase Glycerol phosphate Cathepsin B and L Dopamine monooxygenase dehydrogenase cdc 10 Dynenin Glycinamide cdc 13 p60 Elastase ribonucleotide cdc 2 p34 Elastin transformylase cdc 25 p30 Eloagation factor Tu GTP-biading protein Chaparonin Endo-rharnosidase Haemoglobin A
Cholesterol esterase Enolase Haemoglobin Al Cholesterol Enoyl-ACP-hydratase Haemoglobin Barcelona mono-oxygenase Enoyl ACP-reductase Haemoglobin Barts Citrate synthetase ets oncogene protein Haemoglobin Beth Israel Clathrin Ferritin Haemoglobin Bunbury Collagenase Ferrodoxin Haemoglobin Cochin-Port Cortisone dehydrogenase Fatty acid synthetase Royal crk oncogene protein figr oocogene protein Haemoglobin Cowtown Cyclin A and 6 fps oncogene protein Haemoglobin Cranston Cyclophilin Fructose bisphosphate Haemoglobin Creteil Cytidine deaminase aldolase Haemoglobin Cytidylate deaminase Fumarase Haemoglobin Cytochrome C peroxidase GABA aminotransferase Los Angeles Cytochrome P450 Galactosidase Haemoglobin Punjab Cytosine Gelatinase Haemoglobin F
methyltransferase Gelsolin Haemoglobin Gower dbl oncogene protein Glucophosphate isomerase Haemoglobin Defensin Glucosylceramide Hammersmith Diacyl glycerol galactosyl transferase Haemoglobin Hiroshima acyltransferase Glutaminase Haemoglobin Indianapolis Dihydrofolate reductase Glutamine phosphoribosyl Haemoglobin Kansas Dihydroorotatase pyrophosphate Haemoglobin Kariya Dihydroorotate amidotransferase Haemoglobin Kempsey dehydrogenase Haemoglobin Kenya Haemoglobin Lepore Hydroxyrnethylglutaryl- MyeBoperoxidase Haemoglobin M CoA-reductase Myofilament Haemoglobin M Hydroxymethylglutaryl- rnyristoyl transferase Hyde Park CoA-synthetase Na I K ATPase Haemoglobin M lwate Hydroxysteroid N-acetylglucoronidase Haemoglobin M Saskatoon dehydrogenase NA -dependent sterol-4 Flaemoglobin Nancy Hypoxanthine-guanine- carboxylase Haemoglobin Philly phosphoribosyl transferase NADase Haemoglobin Quong Sze IMP-dehydrogenase NA PH dependent 3-Flaernoglobin Raleigh Indole lyase oxosteroid reductase Haemoglobin Ranier Inositol phosphate Nexin Haemoglobin S phosphatase Nmras oncogene protein Haemoglobin Sealy fnt-9 oncogene protein Nucleolus protein B23 Haemoglobin Seattle Isocitrate lyase Nucleoside diphosphate Haemoglobin St. Louis Kinin-forming enzyme kinase Haemoglobin St. Mande Ki-ras oncogene protein Ornithine Haemoglobin Titusville Lactate dehydrogenase aminotransferase Haemoglobin Torino Lactoferrin rnithine Haemoglobin Wayne Laminin carbamoyltransferase Haernoglobin'(ork Leukocyte elastase rnithine decarboxylase Haemoglobin Zurich Lipocortin Orotate decarboxylase Ha-ras oncogene protein Lipoxygenase Orotate Hexokinase L-myc oncogene protein phosphoribosy9 transferase Histaminase Lysozyme p53 Histidine decarboxylase Malate dehydrogenase Peptidyl arnidoglycolate HSP 27 IUVaiate synthase lyase Hydropyrimidine Malonyl transacylase Peptidyl prolyl isomerase hydrolase Mannosidase PF4 Hydroxyacyl-CoA- met oncogene protein Phenylalanine dehydrogenase Methaemoglobin hydroxylase Hydroxymethylglutaryl Methionine Phosphatidate phosphatase CoA-splitting enzyme adenosyl transferase Phosphoenol pyruvate mos oncogene protein carboxykinase Phosphofructokinase rei oncogene protein tRNA synthetase Phosphoglucokinase Ribonucleotide reductase Tropomyosin Phosphoglucomutase Ribose phosphate- Tryptophan synthase Phosphogiycerate kinase pyrophosphate kinase 'fubulin Phosphogiyceromutase Ricin tropoelastin Tyrosine kinase Phospholipase A2 acid phosphatase Ubioquinone reductase Phospholipase C acid protease UPA
Phospholipase CG I Heavy meromyosin Uridine monophosphate Phospholipase D serine / threonine kinase kinase Phospho9ipase S Spectrin Vitamin K reductase Phosphoribonlutase Spermine synthase vvee-1 gene product Phosphoribosyl phosphate Squalene epoxidase Xanthine dehydrogenase transferase Squalene monooxygenase Xanthine oxidase pirri oncogene protein src oncogene protein Xylosyl transferase Plasminogen activator- Sterol rraethyltransferase yes oncogene protein inhibitor suc l p13 a-actin Porin Succinyl-CoA -synthetase a-rnannosidase pRB (retinoblastoma gene Superoxide dismutase a-rnelogenin product) Tartrate dehydrogenase a-tubufin pRb retinablastorrsa gene Thioesterase R-actin product Thioredoxin R-glucuronidase Properdin Thrombospondin R-glycerophosphatase Prostaglandin synthase Thromboxane-A2- R-ketoacyl-ACP-Protein kinase C synthetase reductase Purine nucleoside Thymidylate synthetase ~ ketoacyl-ACP-phosphory9ase T'ransacylase synthetase Pyruvate dehydrogenase Triose phosphate isomerase R-spectrin Pyruvate kinase Triose phosphate ~-tropornyosin raf oncogene protein dehyrogenase R tubulin A further particularly preferred group of intracellular receptors are the HMG proteins, such as are described for example in the International Patent Application PCT/EP96/00716, and in particular the HMGA proteins. As used herein the term HMGA proteins preferably denotes overall the following proteins: HMGA1, HMGAla, HMGAlb and HMGA2o The HMGA proteins have a modular structure and each comprise three DNA-binding domains, which are termed "AT
hooks" and are shown as DBD1 to DBD3 in Fig. 2, as well as a very acidic C-terminal region. It is obvious to the person skilled in the art that antagonists which bind to one of the "AT hooks" recognise not only the HMGA1 proteins and thus the two splice variants HMGAIA and HMGAIB (see Fig. 2), but also exhibit cross reactivity with similar DNA-binding molecules such as HMGA2o Apart from HMGA2, many further proteins also have sequences similar to the "AT hooks" and form in each case further receptors. Such proteins are listed inter alia in Table 3:
Table 3:
Column 1: Protein data bank - Access codes; Column 2: Protein designation Q9UKBO Human HMG-Protein-R
Q9UKY1 ZHX1_Human Zinc finger- and Homoeobox-Protein 1 P55198 AF17_HUMAN AF-17 Protein [MLLT6]
Q59F28 Human Trithorax Homologon (Fragment) Q6PJQ2 Human ZNF406 Protein (Fragment) Q75PJ9 Human ZFAT-1 Protein Q75PJ7 Human ZFAT-3 Protein Q75PJ6 Human TR-ZFAT Protein Q9ULG1 Human KIAA1259 Protein Q9NUK2 Human Hypothetical Protein FLJ11314 Q9NTG6 Human Hypothetical Protein DKFZp434B0616 Q8IXO1 SFR14_HUMAN Presumed Splice Factor Q9H5J8 Human Hypothetical Protein FLJ23363 Q619Y6 Human MGC5306 Protein Q81X01-2 Splice Isoform 2 of Q8IX01 Q8IX01-3 Splice Isoform 3 of Q8IX01 Q8IX01-4 Splice Isoform 4 of Q8IX01 Q15291 RBBP5_HUMAN Retinoblastoma-binding Protein 5 (RBBP-5) P51608 MECP2_HUMAN Methyl-CpG-binding Protein 2 Q6IPE2 Human FLJ12800 Protein Q6QHH9 Human Methyl-CpG-binding Protein 2, Isoform B
Q9H8H4 Human Hypothetical Protein FLJ13629 Q7Z384 Human Hypothetical Protein DKFZp686A24160 042043 ENK7_HUMAN HERV-K_1q23.3 Provirus P61569 ENK16_HUMAN HERV-K_10p14 Provirus Q86VM3 Human MYB binding Protein la [MYBBPIA]
Q9UNW3 Human Coat Protein RIC-2 Q9BWEO Human REPINI Protein (Hypothetical Protein ZNF464) Q9ULL5 Human KIAA1205 Protein Q9NZH2 Human Dhfr Oribeta-binding Protein RIP60 Q9NZI3 Human Linens epithelium-containing growth factor p52 Q9NY27 Human Regulatory Sub-Unit 2 of Proteinphosphatase-4 Q86U91 Human HMGA2/RAD51L1 Fusion protein 095368 Human Transcriptional Coactivator p52 Q9P015 Human HSPC145 (Mitochondrial Ribosome protein L15) Q5U071 Human HMG Protein 'box 2' Q9HOY1 Human Hypothetical Protein DKFZp564I206 Q6ZP45 Human Hypothetical Protein FLJ26517 P17096-2 Splice Isoform HMG-Y of P17096 [HMGA1]
Q9Y6XO SETBP_HUMAN SET-binding Protein (SEB) [SETBPI]
Q8TEK3 DOT1L_HUMAN Histone-Lysine N-Methyltransferase Q8TEK3-2 Splice Isoform 1 from Q8TEK3 [DOT1L]
Q03164 HRX_HUMAN Zinc finger-Protein HRX (ALL-1) Q86YP1 Human Transcription factor MLL UPN96240 Q86YN9 Human Transcription factor MLL UPN95022 Q03164-2 Splice Isoform 4P-18B from Q03164 [MLL]
P04920 B3A2_HUMAN Anion Exchanger Protein 2 Q59GF1 Human Anion Exchanger-2 type a-variant Q8TAG3 Human SLC4A2 Protein Q6P391 Human PSIP1 Protein 075475 Human Linens epithelium-containing growth factor p75 Q9UEY6 Human Anion exchanger-2 type a [SLC4A2]
Q9UEY5 Human Anion exchanger-2 type b2 [SLC4A2]
Q9UEY4 Human Anion exchanger-2 type b1 [SLC4A2]
Q9UER6 Human Transcriptional coactivator p75 000256 Human DFS70 P04920-2 Splice Isoform B1 of P04920 [SLC4A2]
Q9BTB1 Human Hypothetical Protein MGC10561 Q9UKB0 Human HMG Protein-R
043167 ZBT24_Ht7MAN Zinc finger- and BTB-domain-containing protein Q8N455 Human ZBTB24 Protein [ZBTB24]
Q5TED5 Human Zinc finger-Protein 450 [ZNF450]
Q96CKO Human Zinc finger-Protein 653 Q96AS7 Human Zinc finger-Protein 653 P51888 PRELP_HUMAN Prolargine Precursor Q5JPC9 Human Hypothetical Protein DKFZp667H216 Q6FHG6 Human PRELP-Potein Q6ZR44 Human Hypothetical Protein FLJ46672 Q8NEZ4 MLL3_HUMAN Myeloid/lymphoid-Leukaemia protein 3 Homologon Q96AC6 KIFC2_HUMAN Kinesine-like Protein KIFC2 Q9COH5 K1688_HUMAN Protein KIAA1688 P52926 HMGIC HUMAN HMG Protein I-C
Q9UKV3 ACINU_HUMAN Inductor of apoptotic Chromatin condensation Q59F82 Human C21orf2-Protein variant Q5VYT7 Human OTTHUMP00000021181 Q96M56 Human Hypothetical Protein FLJ32810 Q69YJ6 Human Hypothetical Protein DKFZp667N107 08NEY3 SPAT4_HUMAN Spermatogene-associated Protein 4 Q12809 KCNH2_HUMAN Potassium Potential-controlled Ion channel Sub-family Q8IYY4 Human protein similar to the DAZ-interacting protein 1[DZIPIL]
Q6ZN04 Human Hypothetical Protein FLJ16544 Q5SXN7 Human Serologically defined colon cancer antigen 3 Q8IVG2 Human KIAA2009 Protein (Fragment) [RKHD3]
Q75VX8 Human KIAA2038 Protein (Fragment) [KIAA2038]
Q12809-2 Splice Isoform 2 von Q12809 [KCNH2]
Against this background the present invention also relates to L-nucleic acids and in particular spiegelmers, which are directed against any of the target molecules mentioned in Tables 1 to 3.
Since the L-nucleic acid is used as an intracellularly active agent, in particular within a cell, in order to bind there to an intracellular receptor, intracellularly different forms of the interactions between the 10 intracellular receptor and its interaction partners can be influencedo Depending on the type of interaction partners of the intracellular receptor, the intracellular use of L-nucleic acids thus enables interactions of proteins, nucleic acids, lipids, carbohydrates, or combinations of 15 proteins, nucleic acids, lipids, carbohydrates with one another and between one another to be influencedo In connection with the use according to the invention of a L-nucleic acid, in particular a spiegelmer, as 20 intracellular agent and the method for binding an intracellular receptor, it should be noted that this preferably relates to an in vitro application and to an in vitro methodo 25 In connection with the use according to the invention of a L-nucleic acid, in particular a spiegelmer, for the production of a medicament for the treatment and/or prevention of a disease and/or for the production of a medicament for diagnostic purposes, the target molecule is 30 an intracellular target molecule. In this connection the intracellular target molecule is one that is causily or non-causily involved in the disease or illness to be prevented, treated or diagnosed, but in any case its binding to a L-nucleic acid that binds specifically thereto means that, in the case of a medicament, the disease is alleviated, prevented or cured, and/or in the case of a diagnostic agent the disease or a predisposition thereto can be established or diagnosed. As used herein the concept of diagnosis include an initial diagnosis as well as subsequent diagnoses, in particular diagnoses or investigations in order for example to follow or to determine the progression of the disease or the stages of the disease. It is within the scope of the invention that the target molecule is an intracellular receptor as described herein, in particular a transcription factor, an intracellular target molecule or an HMG protein. Within the scope of the present invention it is most particularly preferred if the target molecule is present intracellularly, i,ea within a cell, and the interaction having an influence on the disease and/or diagnosis takes place intracellularly between the L-nucleic acid and in particular the spiegelmer, and the target molecule, ioeo the receptor. It is also within the scope of the present invention if the target molecule is present outside a cell and the interaction between the L-nucleic acid and in particular the spiegelmer, and the target molecule, i>ea the receptor, takes place extracellularlyo The indications for use of the medicament produced using an L-nucleic acid, in which the nucleic acid is directed against an intracellular target molecule, follow for the person skilled in the art from the involvement of the intracellular target molecule in the respective pathogenicity mechanism on which the indication is based.
Thus, it is known for example for HMGA proteins that these are associated with carcinomas (inter alia of the breast, lungs, skin, thyroid) as well as leukaemias and lymphomas and other malignant tumours, such as inter alia sarcomas (rhabdomyosarcoma, osteosarcoma), Also, HMGA proteins are expressed in many types of mesenchymal tumours, including inter alia hamartomas (breast and lungs), fatty tissue tumours (lipomas), pleomorphic adenomas of the salivary glands, uterine leiomyomas, angiomyxomas, fibroadenomas of the breast, polyps of the endometrium and atherosclerotic plaques. HMGA is an interesting therapeutic target.
Blockade of HMGA could be a suitable starting point for controlling cancer and preventing its metastatic spread.
As described in detail herein, L-nucleic acids directed against HMGA proteins are also suitable for the diagnosis and/or treatment of virus diseases and arteriosclerosis on account of the involvement of HMGA proteins in the regulation of the transcription of a large number of viral genes or the marked expression of HMGA and in particular HMGA1 in the tissues affected by arteriosclerosis, which is associated with neointimal, vascular smooth muscle cells, macrophages and new blood vessels.
Although - as has been surprisingly found by the present inventors - nucleic acids, preferably L-nucleic acids and particularly spiegelmers, are able as such to penetrate a phospholipid double membrane such as a cytoplasmic membrane and then to be intracellularly functional in the sense of the specific interaction with the intracellular receptor, the effectiveness of the infiltration of the L-nucleic acid can be influenced and in particular enhanced by the use of various techniques. These techniques include the use of chemical compounds or molecules as well as the use of physical measures. Irrespective of the type, these techniques are herein generally referred to as delivery vehicles. It is within the scope of the present invention that the inventors have likewise established that aptamers too exhibit this property, and like the spiegelmers can similarly be used involved together with the composition according to the invention for basically the same purposes, applications and uses.
In the use of chemical compounds and molecules, a further distinction is whether the nucleic acid needs to be modified or not for the delivery. A modification for the purposes of using a delivery vehicle is generally not necessary if the delivery vehicle is or comprises a vesicle, such as for example in the case of liposomes, polypeptide vehicles, cyclodextrins, dendrimers, nanoparticles and microparticles, and also polyethyleneimine. A modification for the purposes of using a delivery vehicle is on the other hand normally necessary if the delivery vehicle uses receptor-mediated endocytosis, fusogenic peptides, signal peptides or lipophilic conjugates. The group of physical techniques includes in particular electroporation and iontophoresis.
It will be recognised that further techniques for transporting a compound through a phospholipid double membrane such as a cytoplasmic membrane are known to the person skilled in the art in this field, which in principle are also suitable for the transfer of a functional nucleic acid, such as for example an aptamer and/or a spiegelmero The individual delivery vehicles which can be used within the scope of the various aspects of the present invention will be described in more detail hereinafter.
Liposomes consist of artificial cationic lipids such as 1V-[ 1- ( 2, 3-dioleoyloxy) propyl ]-1V, N, N-trimethylammonium chloride (DOTMA) and N- [1- (2, 3-dioleoyloxy) propyl] -N,N,N-trimethylammonium sulfate (DOTAP), in which the cationic groups interact with the negatively charged nucleic acids and neutralise their anionic charge. The transport takes place via endocytosis (PNAS, 93:11493-11498, 1996).
However, cationic liposomes are cytotoxic, especially in higher concentrations, which restricts their use in v.a.tro and in vivo (Biochem Biophys Res Commun, 197e818, 1993;
Biochem Biophys Res Commun, 1372:55-68, 1998), On the other hand the amphiphilic pyridinium-based lipid SAINT-2 is a non-toxic formulation (Nucleic Acids Res, 2902079-2087, 2001)a Also, pH-sensitive liposomes are a possible alternative, which consist of amphiphatic molecules such as cholesteryl hemisuccinate (CHEMS) and dioleyl phosphatidyl ethanolamine (DOPE) (J Pharmacol Exp Ther, 29701129-1136, 2001). Widely differing formulations of liposomes can be found in the review articles by Dass and Torchili (Drug Delivery, 9:169-180, 2002; Nat Rev Drug Disc, 4:145-160, 2005).
With receptor-mediated endocytosis (RME) transport mechanisms which are already present in the cell membrane are utilisedo For this purpose the nucleic acid is coupled for example via a poly-L-lysine (PPL) linker 5 covalently to a transporter protein ("carrier" protein)o The choice of transporter protein depends in this connection on the ability to bind to specific receptors of the cell membrane and to accumulate in the cell by endocytosiso A cell-specific transport can thus be 10 realised. For example, an antisense phosphorothioate directed against c-myc could be introduced into M-14 human melanoma cells (Anticancer Res, 17:29-35, 1997). However, an effective transport by means of RME depends in this case not only on the affinity of the receptor for the 15 ligand, but also on the limitation of the selected receptor as regards the cells - especially in vivoa Furthermore the selected ligand must be inactive or have an enhancing effect as regards the therapeutic result, in order to avoid a possible toxicity of the transport 20 vehicle. Thus, the selection and the ubiquitous propagation of the selected receptor in vivo is decisive for a successful RME-based transport. Moreover, a sequestration of nucleic acids in endosomal compartments has been observed in RME-based transport, which would 25 appear to make this method not very promising for an intracellular transport or an intracellular release or delivery. Most important of all, the coupling between the receptor and nucleic acid must be chosen so that the function of one or other is not reduced (J Pharmaceutical 30 Science, 92 (8)01559-1573, 2003).
Fusogenic peptides have been used to enable peptide-oligonucleotide conjugates to fuse with the cell membrane and thus effect the transport in the cell (Bioconjug Chem, 9e 466-475, 1998; Bioconjug Chem, 6:43-53, 1995; Nucleic Acids Research, 25:2730-2736, 1997)0 The selected import of nuclear proteins from the cytosol into the nucleus is mediated by short peptide sequences, which are termed nuclear localisation signals (NLS)o Thus, various NLS peptide derivatives can be used in order to transport nucleic acids into the nucleus (Bioconjug Chem, 10:1005-1012, 1999; Bioconjug Chem, 10:598-606, 1999; Bioconjug Chem, 6:101-108, 1995). In addition there are also so-called signal import peptides (IP), which can promote the cellular uptake of nucleic acids and could be derived for example from Kaposi's fibroblast growth factor (K-FGF) (Adv Drug Deliv Rev, 44:35-49, 2000)0 Vesicles similar to viral capsids can be formed by blocks of polypeptides, which can serve as possible transport vehicles for an intracellular transport (Nat Materials, 3(4)0244-8, 2004).
The hydrophilic character of oligonucleotides and the anionic phosphodiester backbone reduce the cellular permeationo Lipophilic conjugates are therefore one possible way of increasing the ability of oligonucleotides to bind to lipoproteins and thereby improve intracellular delivery. The conjugate that has been most thoroughly investigated is cholesterol (Antisense and Nucleic Acid Drug Development, 12:103-128, 2002).
Cyclodextrins are cyclic oligosaccharides, which have a central hydrophobic cavity and multiple hydroxyl groups on the outer surface. Cyclodextrins have therefore already been used for the transport of anti-sense oligonucleotides in human T cell lines (Antisense Res Dev, 5:185-192, 1995) and have also been used in vivo for intracellular transport and for intracellular release or delivery of immunogenic CpG sequences (Biochem Pharmacol, 52:1537-1544, 1996), A wide variety of formulations of cyclodextrins are given in the review article by Davis und Brewster (Nature Reviews Drug Discovery 3:1023-1035, 2004) 0 Dendrimers are highly branched macromolecules, which are composed of repetitive units of, typically, polyamides>
The molecules carry functional groups such as primary amino groups on their surface, which interact with other molecules by electrostatic interaction. A complex structure formation thus takes place rapidly and in a highly reproducible manner, which leads to complexes of low cytoxicity (Nucleic Acids Research, 28:4225-4231, 2000; Clin Cancer Res, 7:3606-3612, 2001).
Cyanacrylate nanoparticles have been tested since the beginning of the 1990s for the release or delivery of oligonucleotides. The interaction of oligonucleotides with the nanoparticles takes place through ion pairs of the anionic charge of the oligonucleotides with various hydrophobic cations, principally with charged nanoparticles. Polyisohexyl cyanoacrylate (PIHCA), polyisobutyl cyanoacrylate (PIBCA) or polyhexyl cyanoacrylate (PHCA) are commonly used for the formation of nanoparticles, although a large number of lipophilic cation-oligonucleotide pairs have also been tested (Pharm Resõ 101370-1378, 1994; PNAS, 91:10460-10464, 1994; Pharm Res, 90441-449, 1992). Also, nanoparticles have already been employed for in vivo use (Biochem Biophys Res Commun, 279:401-406, 2000; Pharm Res, 13:38-43, 1996).
Microparticles or so-called microspheres are typically formed from biodegradable polymers such as poly (d,l-lactide-co-glycolides [P(LA-GA)] and are used for the delayed release of oligonucleotides (J Pharm Sci, 91a790-799; 2000; J Controlled Release, 69:197-207, 2000; J Drug Traget, 5:291-302, 1998).
Electroporation is a transport technology, which uses a strong electric field in order to destabilise the lipid double membrane, and thereby permeabilise the cell membrane and thus effect a transport of the substance to be administered, which can also be present in ionised form, into the cell (iontophoresis)e Electroporation has already been successfully used in order to effect transdermal transport of oligonucleotides ex vivo as well as in vivo (Int J Pharm, 184:147-156, 1999; J Drug Traget, 5:275-289, 1998; Pharm Res, 15:1596-1602, 1998; Int J
Cancer, 85:260-266, 2000; Biochem Biophys Res Commun, 212:286-292, 1995; Blood, 88:731-741, 1996)e The uptake of "naked" oligonucleotides into cells can be improved in vitro and ex vivo by the use of high pressure.
The need for closed systems in order to use this technology means that it can only be used for ex vivo applications (PNAS, 96:6411-6416, 1999; Hum Gene Ther, 10:2355-2664, 1999)0 Also, the use of shockwaves, acoustic high pressure pulses, effects the transport of oligonucleotides into cells (J Mol Med, 790306-313, 2001; Cancer Res, 58:219-221, 1998), Ultrasound is an acoustic technology comparable to shockwaves, but employs higher frequencies (MHz instead of Hz) and shorter application times (from seconds to minutes), and has already been used in a supporting role in gene therapy techniques (Hum Gene Ther, 701339-1346, 1996; Invest Radiol, 32:723-727, 1997;
Ultrasound Med Bio, 25:1451-1457, 1999), In a further aspect of the present invention a new delivery vehicle is provided, which is suitable in particular for the transport of functional nucleic acids such as aptamers, preferably functional L-nucleic acids, and most particularly preferably spiegelmerso The delivery vehicle is in this case a micelle-like or liposome-like structure based on polyethyleneimine.
Without wishing to be too specific in the following description, the present inventors start from the assumption that the nucleic acid is present embedded or contained in the micelle-like or liposome-like structure>
Polyethyleneimine can in principle be present and also used as linear or branched polyethyleneimine, polyethyleneimine in the branched form being particularly preferredo Moreover, polyethyleneimine can exist and can also be used as high molecular weight or low molecular weight polyethyleneimine. Preferably high molecular weight polyethyleneimine has a molecular weight of about 800 kDa and low molecular weight polyethyleneimine has a 5 molecular weight of about 3 kDa. Within the scope of the present invention a polyethyleneimine with a mean molecular weight of about 25 kDa is preferred, a branched polyethyleneimine with a molecular weight of about 25 kDa being particularly preferred.
Although it is not essential for an effective implementation, it is nevertheless preferred if in the delivery vehicle according to the invention the nucleic acid itself to be delivered also carries a modification.
In this connection it is preferred if the modification is selected from the group comprising PEG residues. It is furthermore preferred if the PEG residue has a molecular weight of about 1000 to 10000 Da, preferably about 1200 to 5000 Da, more preferably about 1500 to 2500 Da and most particularly preferably about 2000 Da.
When mixing the nucleic acid with the delivery vehicle to produce a composition according to the invention, the ratio of the total number of nitrogen groups of the polyethyleneimine to the total number of phosphate groups of the nucleic acid to be delivered via or packaged with the delivery vehicle is adjusted to about 1 to 20, preferably about 1.5 to 10, more preferably 2 to 5, and most particularly preferably about 2 to 3.
The delivery vehicle according to the invention thus enables the mechanism of intracellular transport of nucleic acids via condensation or packing with charged particles or reagents and associated change in the charge of the overall complex, to be used also for functional nucleic acids such as aptamers, and in particular L-nucleic acids such as spiegelmers> This complex is readily taken up through endocytosis and thereby passes into the cytosol of the cell. A disadvantage of this method is the stability of the DNA/RNA and the release of the nucleic acid from the endosomal compartment. In the cytosol of the cell a lysosome is rapidly formed from the tightly constricted endosome due to the introduction of proteases or nucleases and by protonation of the compartment. There nucleases break down the nucleic acids. This does not apply however to spiegelmers, since due to their unnatural configuration these are nuclease-stable. Also, nucleic acids are not stable in the acidic environment of the lysosomeo However, this is more true of nucleic acids synthesised from DNA, and less true of nucleic acid from RNA, The whole complex is rapidly transported out of the cell again by exocytosis and breakdown in the Golgi apparatus, and accordingly only a few nucleic acids pass into the cell. One of the challenges which a suitable transfection system has to overcome is thus the stabilisation as well as the release of the nucleic acid from the endosomes into the cytosol, As regards stability, RNA spiegelmers have ideal properties for a transfection of eukaryotic cells, since being enantiomers they are not split by enzymes.
The use according to the invention of L-nucleic acids and in particular in connection with the composition according to the invention is important specifically for this class of active substances, since their action mechanism is based on a stoichiometric approach and not on a catalytic approach, in which the intracellular release of just a few molecules is already sufficient to achieve the desired effect. To this extent the present invention satisfies a need that was not hitherto met by the techniques of the prior art.
The transfection system according to the invention that is provided and elaborated by the delivery vehicles according to the invention is based on the formation of micelles from nucleic acids and branched polyethyleneimine (PEI).
The phosphodiester backbone of the nucleic acids interacts with the free nitrogen positions of the PEI and forms small micelles through cross-linking, which have a positive charge on account of the PEI. These micelles are readily taken up as endosomes from a cell by constriction of the plasma membrane. The PEI now buffers inflowing protons, as a result of which many chloride ions in the interior of the endosome lead to a swelling of the compartment on account of the osmotic pressure. This effect of PEI is described in the literature as the proton sponge effect, and ultimately leads to the rupture of the endosome and the release of the spiegelmers into the cytosol. (Pharm Res, 22 (3)> 373-80, 2005; Eur J Cell Biol 83 (3)0 97-111, 2004; Gene Ther 9(24)e1700-7, 2002).
It is within the scope of the present invention to apply the composition according to the invention as an aerosol.
In addition spiegelmers can be derivatised with signal peptides for intracellular as well as intranuclear delivery, and also for organ-specific delivery. A
coupling of signal peptides directly to the polyethyleneimine can be used for a targeted localisation in organs or within the cell.
In another further aspect the present invention relates to L-nucleic acids, in particular spiegelmers and more preferably RNA spiegelmers, which are directed against HMGA proteins. The spiegelmers disclosed herein directed against HMGA proteins are in particular examples of the knowledge, likewise forming the basis of the present invention, that L-nucleic acids and in particular spiegelmers are able to overcome a phospholipid double membrane or a cytoplasmic membrane of a cell and bind intracellularly with the intracellular receptor, for the specific binding to which they have been selected. As regards the configuration of the HMGA proteins and the L-nucleic acids directed against the latter, the comments made herein regarding the intracellular use of L-nucleic acids also apply in connection with the present aspect of the invention (and vice-versa), and is referred to again at this point in order to avoid unnecessary repetitions.
The HMG (high mobility group) family of DNA-binding phosphoproteins are present as non-histone components of chromatin throughout mammalian cells (Grosschedl et aIe 1994) The basic HMG proteins are sub-divided into three different families - HMGB (formerly HMG-1/-2), HMGN
(formerly HMG-14/-17), and the HMGA family (formerly HMG-I/Y/C), Each HMG family has its characteristic functional sequence motif: the "HMG box" (HMGB family), the "nucleosomal binding domain" (HMGN family), and the "AT
hook" (HMGA family).
According to the current state of knowledge the HMGA
family comprises two genes, HMGA1 and HMGA2o Three different proteins can be expressed by alternative splicing by HMGA1, (HMGAla [formerly: HMG-I], HMGAlb [formerly: HMG-Y], HMGAlc [formerly: HMG-I/R]), whereas only one protein (HMGA2 [formerly: HMGI-C]), can be expressed by HMGA2o HMGAla, HMGAlb and HMGA2 are polypeptides of approximately 100 amino acid length and have a modular sequence organisation: they possess three strongly basic regions ("AT hook"), which bind the narrow small channels of double-stranded AT-rich DNA (Reeves &
Nissen 1990), The C-terminus on the other hand contains many acidic amino acids. The proteins do not have a stable secondary structure when free in solution, and only adopt a defined conformation when they are present in the complex with DNA or other proteins (Huth et al 1997). HMGA
proteins belong to the most strongly modified proteins in the mammalian cell nucleus and are phosphorylated, acetylated and methylated (Reeves & Beckerbauer 2001)0 The HMGA proteins per se do not have any transcriptional activity, but being so-called architectonic transcription factors they organise through their protein-protein and protein-DNA interactions the formation of the nucleoprotein-DNA transcription complex (Wolffe 1994).
They thus exert a regulatory activating or inhibitory influence on the expression of a large number of genes.
5 The most prominent example of a positive regulation is the involvement of HMGA1 in the regulation of IFN-P (Thanos &
Maniatis, 1992). Thus, for example in the case of the IFN-R promoter HMGAlb stimulates the binding of NF-KB and ATF-2 to the DNA double helix and at the same time alters 10 the DNA structure in such a way that NF-KB and ATF-2 can interact with one another and presumably also with the rest of the transcription machinery (Thanos & Maniatis 1992, Du et al 1993)< A further transcription-activating effect in connection with arteriosclerotic pathogenesis is 15 the CD44 gene regulation induced by HMGA1 (Foster et al 1998). CD44 is a cell surface glycoprotein and is involved in the migration and proliferation of smooth muscle cells after endothelial damage (Jain et al 1996, Cuff et al 2001). The transcriptional regulation of CD44 is induced 20 by the binding of c-Fos and c-Jun to the AP-1 binding site in the CD44 promotor and is strengthened by the binding of HMGA1. Investigations in rats has shown that due to CD44 over-expression, there is an intensified recruitment of smooth muscle cells, which has a direct influence on the 25 formation of arteriosclerotic lesions (Pellacani et al 1999; Foster et al. 1998; 2000), Investigations on the expression of the HMGA1 gene localised in the chromosomal band 6p2l.3 and of the HMGA2 30 gene localised in the region l2q14-15 showed that these are mainly active in processes of cell differentiation.
Accordingly, a strong expression of these genes can be found during embryo development and in undifferentiated cells (Chiappetta et al 1996) as well as in growth factor-stimulating cells (Friedman et al 1993; Johnson et al 1990; Ogram et al 1995; Holth et al 1997). In adult, differentiated tissue, HMGA1 is strongly expressed only in the retina, while HMGA2 is not found at all in the other tissues and HMGA1 is found only in very low concentrations (Bussemakers et al 1991; Chiappetta et al 1996; Rogalla et al 1996; Zhou et al 1995; Chau et al 2000). A reactivated expression of HMGA proteins in differentiated normal tissue is at the same time associated with the growth and differentiation of adipocytes (Zhou et al 1995; Anand &
Chada 2000; Melillo et al 2001), the proliferation of smooth muscle cells in the blood vessels after vascular damage (Chin et al 1999), in the immune response in inflammatory reactions (Pellacani et al 1999), as well as in apoptotic processes (Diana et al 2001; Sgarra et al 2003). The amount of HMGA1 varies in this connection depending on the proliferation rate of the cells (Johnson et al 1990).
During the course of embryo development the HMGA1 expression is concentrated on specific organs of ectodermal, mesodermal or endodermal origin, whereas HMGA2 is restricted to mesenchymal tissue. Up to now no information exists concerning the phenotype of HMGA1 knockout mice, possibly because the lack of this factor has damaged embryo development too severely. HMGA2 knockout mice on the other hand exhibit dwarfism and have particularly little fatty tissue (Zhou et al 1995) and furthermore are resistant to diet-induced obesity (Anand &
Chada 2000)0 Finally, HMGA2 and HMGAlb expression is not detectable in the fatty tissue of normal mice, but is dramatically increased in the fat of fatty or diabetic mice (Chada et al, 2004), which points to a connection between adiposity/obesity and HMGA expression.
Over-expression of HMGA1 influences in particular (Reeves et al 2001)0 o Cell cycle and growth regulators such as cdc25A, o Intermediary filament markers such as cytokeratin, type 1 a Apoptosis regulators such as TRAR15 o Oncogenes and tumour suppressor genes such as MET
o Genes for DNA repair and recombination such as DNase x o Cell fate and development regulators such as frizzled-5 o Receptors such as FGFR1 o Cell adhesions, motility and invasion genes such as collagen type 1 o Angiogenesis regulators such as FGFR2 Invasion regulators such as MMP-16 o Small GTPases of the Rho family and their regulators such as RhoC
o cell-cell interaction genes such as cadherin 12 o Growth factors and cytokines such as IL-11 Abnormal regulation of HMGA1 could therefore lead to general alterations of gene expression and thereby contribute significantly to the formation of transformed and/or metastatic phenotypes.
HMGA protein appear to play different roles in mesenchymal and epithelial tumourso in malignant epithelial tumours HMGA expression is associated rather with later stages of carcinogenesis, whereas benign tumours - more often rarely converting mesenchymal tumours - already express HMGA in early hyperplasiao This points to the fact that HMGA
proteins in tissues of different embryonic origin fulfil different functions, from which also directly follows the corresponding uses of the L-nucleic acids according to the invention in the diagnosis and/or treatment of corresponding diseases, as is also illustrated in more detail hereinafter.
The expression of HMGA1 in various human and animal neoplasms was investigated in animal models. The role of HMGA1 was demonstrated in animal models of tumourigenesis (Leman et al 2003; Ram et al 1993) as well as neoplastic progression (Bussemakers et al 1991; Nestl et al 2001; Ram et al 1993).
Raised expression of the HMGA1 gene has been demonstrated in the following carcinomas o Prostate (Bussemaker et al 1991; Tamimi et al 1996, Leman et al 2003; Nestl et al 2001) o Pancreas (Nestl et al 2001; Abe et al 2000, 2002;
Tarbe et al 2001) a Thyroid (Chiappetta et al 1998, 1995) o Cervix (Bandiera et al 1998) o Stomach (Xiang et al 1997) o Breast (Holth et al 1997; Baldassarre et al 2003;
Reeves et al 2001; Nestl et al 2001; Ram et al 1993;
Dolde et al 2002) o Colon/Rectum (Fedele et al 1996; Abe et al 1999; Kim et al 1999; Chiapetta et al 2001) o Ovaries (Masciullo et al 2003) and furthermore in o Neuroblastoma (Giannini et al 2000; 1999) as well as o Lymphoma (Wood et al 2000a; b).
The precise reason for the increased expression and the role of the HMGA1 gene in the pathogenesis of the tumour and the process of metastasis has still not been fully clarified. Various studies indicate however that the strength of the HMGA1 expression by the respective tumour as a prognostic marker correlates with its metastasing potential and thus represents a characteristic feature of a malignant transformed cell (Giancotti et al 1987)0 Further HMGA1-associated - in this case benign, mesenchymal tumours - are characterised by chromosomal changes in the chromosomal HMGA1 region 6p21o3, Such aberrations have up to now been described inter alia in a Uterine leiomyoma (Mark et al 1988; Ozisik et al 1993) o Lipoma (Sreekantaiah et al 1990) ~ Endometrial polyps (Fletcher et al 1992; Dal Cin et al 5 1995) as well as o chondroid hamartoma of the lungs (Fletcher et al 1991;
Johansson et al 1992, 1993), Aberrations in the genetic mechanisms which control growth 10 and proliferation are the primary cause of carcinogenesis.
The expression of HMGA proteins is strongly associated with tumour development, as has been shown in a number of articles and papers (Giancotti et al. 1987, 1989, 1993).
Thus, a significant HMGA2 expression was found in 15 chemically or virally caused tumours as well as in spontaneously occurring tumours, whereas this protein could not be detected in non-transformed cells or healthy tissue (Giancotti et a1. 1989) . In accord with this, in the case of cells infected with oncogenic retroviruses in 20 which the synthesis of HMGA2 expression had been specifically blocked, various phenotype markers for transformation were absent (Berlingieri et al, 1995).
The key role of HMGA proteins in normal as well as 25 pathological growth has been elucidated in mouse modelse HMGA2 knockout mice exhibit stunted growth, .i.e. the animals are ca. 60% smaller than wild type mice. These dwarf mice however have a high resistance to chemically induced skin tumours, In the last few years structural aberrations of the chromosome region 12q14-15 involving the HMGA2 gene have been found with the aid of cytogenetic investigations for a whole number of benign tumours of mesenchymal origin, these being the largest group of harmless neoplasias in man. Despite a large number of aberrations (Schoenmakers et al 1995; Kottickal et al 1998; Klotzbuchel et al 1999) the altered forms nevertheless always exhibit a common feature: they retain all three DNA-binding domains, but at the same time lose the acidic C-terminal domain as well as, at the RNA level, the information of the 3' UTR.
Such changes have already been found for many (mostly benign) mesenchymal HMGA-associated tumours:
o Uterine leiomyomas, the most common abdominal tumours in women and the reason for more than 200,000 hysterectomies per year in the USA (Heim et al 1988;
Turc-Carel et al 1986; Vanni et al 1988) o Lipomas (Heim et al 1988; Turc-Carel et al 1986;
Mandahl et al 1987; Sreekantaiah et al 1991; Belge et al 1992) o Endometrial polyps (Walter et al 1989; Vanni et al 1993; Dal Cin et al 1995) = Chondroid hamartomas of the lungs (Fletcher et al 1991, 1995; Dal Cin et al 1993) = Pleomorphic adenomas of the salivary glands (Mark et al 1980, 1986; Bullerdiek et al 1987) o Haemangiopericytomas (Mandahl et a1 1993) o Chondromatous tumours (Mandahl et al 1989; Bridge et al 1992) o Benign tumours of the breast (Birdsal et al 1992;
Rohen et al 1995; Staats et al 1996) o Aggressive angiomyxomas (Kazmierczak et al 1995) o Diffuse astrocytomas o Osteoclastomas (Nuguera et al 1989) The main cause of mortality and morbidity in cancer patients is the metastatic spread of the primary neoplasm in the body. Metastasis is not a simple process, since a successful colonisation of distant organs by disseminated neoplastic cells has to pass through many stages.
Neoplastic cells have to be released from the primary neoplasm, enter the bloodstream, extravasate to distant sites, and finally proliferate again in the parenchyma of the corresponding organ. Many genes which express proteins such as proteases, adhesion molecules, motility factors and angiogenic factors are involved in the various stages of this highly complex, metastatic cascade.
Which of these genes is ultimately decisive as regards metastisis is not known, The HMGA1 gene, being one of the most important factors controlling this process, is however a likely candidate. The gene products of HMGA1 influence the transcription of many genes that are important for successful metastasis. For example, it has already been shown that other metastasis-associated genes are themselves expressed at a reduced level in suppression of HMGA1 expression(Battista 1998; Vallone 1997).
HMGA1 is therefore an important therapeutic target molecule. The blockade of HMGA1 is thus in principle suitable for controlling the cancer and preventing its metastatic spread (Evans 2004; Sgarra 2004)e Thus for example, by using antisense RNAs directed against HMGA
transcripts, cell proliferation in cancer cells has been reduced in vitro or the cells have even undergone apoptosis (Masciullo 2003; Scala 2000; Chau 2003)o It has been shown in animal models that the growth of various pancreatic cancer xenografts is dramatically reduced by gene therapy (adoenoviral expression of antisense RNAs directed against HMGA transcripts) (Trapasso et al 2004)e HMGA1 could furthermore be used as a prognostic diagnostic marker in order to determine which patients would benefit from an aggressive cancer treatment. There is a close correlation between the degree of the malignant transformation and the amount of expressed HMGA1. This can in turn be correlated with a poor prognosis in many types of human cancer, such as prostate cancer (Tamimi 1996; Bussemakers 1991) and colorectal carcinoma (Abe 1999) and neuroblastoma (Giannini 2000)a HMGA proteins are used by many viruses as well as by control factors provided by the host cell for the expression of viral genes or as co-factors, inter alia by o Human papovavirus JC (Leger et al 1995) o Epstein-Barr virus (Schaefer et al 1997) o Herpes simplex virus (Panagiotidis 1999 ; French et al 1996) a HIV-1 virus (Henderson et al 2000).
In particular HMGA proteins are involved in the regulation of the transcription of a large number of viral genes in a host cell. Examples of this are the regulation of the expression of the early and late expressed genes of the human papovavirus JC (Leger et ala 1995), regulation of the EBNA1 (Epstein-Barr virus nuclear antigen 1) gene of the Epstein-Bar virus (EBV), which is jointly responsible for controlling viral latency (Schaefer et al, 1997), regulation of the IE-3 (immediate-early) gene of the Herpes simplex Virus-1 (HSV-1), which codes the prematurely expressed protein ICP4 (Panagiotidis et al, 1999), regulation of the promoter 2, active during the latency phase, of HSV-1 (French et a1, 1996) and regulation of the LTR (long terminal repeats) promoter of the humane HIV-1 virus (Henderson et al 2000).
The requisition of HMGA by the host cell in the context of viral diseases is not only restricted to viral gene regulation, HMGA1 also appears to play a decisive role as architectonic co-factor in the integration of the viral DNA of the HIV-1 virus, of the Moloney murine leukaemia virus (MoMuLv) and sarcoma bird flu virus (ASV) into the human genome, and therefore appears to be an interesting therapeutic approach in antiviral treatment (Van Maele et al. 2006, Li et al 1998, Hindmarsh et a1. 1999).
Inhibitors of HMGA proteins are therefore also suitable for the treatment and diagnosis of virus infections (Reeves & Beckerbauer 2002).
As a result of the previously demonstrated involvement of HMGA proteins in various diseases and their suitability as diagnostic markers, L-nucleic acids and in particular 5 spiegelmers directed against these proteins can be used for the prevention, treatment and diagnosis of the above diseasesa Particularly preferred spiegelmers are in this connection the spiegelmers described herein. In this connection it is recognised by those skilled in the art 10 that although the individual spiegelmers have been developed for a specific HMGA protein, as a result of the domain approach illustrated in Example 2 these also allow a cross-reactivity with other HMGA proteins, which can be seen from the alignment illustrated in Fig. 2.
Furthermore, it is recognised by those skilled in the art in this field that the nucleic acids according to the invention contain a number of structural motifs, which define a class of spiegelmers that bind as intracellular receptors to HMGA proteins. The various structural motifs are illustrated in more detail in Example 1, The nucleic acids according to the invention comprise in a preferred embodiment also those nucleic acids which are substantially homologous to the sequences specifically disclosed herein. The term "substantially homologous"
should preferably be understood in this connection to mean that the homology is at least 75%, preferably 85%, more preferably 90% and most preferably more than 95, 96, 97, 98 or 99%.
The term nucleic acids according to the invention or nucleic acids according to the present invention should furthermore be understood to include also those nucleic acids which comprises nucleic acid sequences such as are described herein, or parts thereof, preferably to the extent that the nucleic acids or the said parts thereof are involved in the binding to HMGA proteins. Such a nucleic acid can be derived from those disclosed herein, for example by shortening or truncation. A shortening can involve either one or both ends of the nucleic acids, as are disclosed herein. A shortening can also involve the inner sequence of nucleotides, i.e. can involve nucleotide(s) between the 5' and the 3' terminal nucleotides. Furthermore the term shortening should also be understood as referring to the deletion of as few as one individual nucleotide from the sequence of the nucleic acids disclosed herein. Shortening can also involve more than one region of the nucleic acid(s) according to the invention, in which connection each of these regions may be as small as one nucleotide long.
The nucleic acids according to the present invention may furthermore be either D-nucleic acids or L-nucleic acids.
Preferably the nucleic acids according to the invention are L-nucleic acids. In addition it is possible that one or more parts of the nucleic acid is/are present as D-nucleic acids, or that at least one or more parts of the nucleic acids is/are L-nucleic acids. The term "part" of the nucleic acids is understood to denote as little as one nucleotide. Such nucleic acids are generally referred to herein as D-nucleic acids or L-nucleic acids.
Accordingly, in a preferred embodiment the nucleic acids according to the present invention consist of L-nucleotides and include at least one D-nucleotidea Such a D-nucleotide is preferably fixed to a part that is different from the region or regions that define the nucleic acids according to the present invention, and is preferably fixed to those parts thereof which are involved in an interaction with other parts of the nucleic acids.
Preferably such a D-nucleotide is fixed to the end of each region or to each nucleic acid according to the present invention. In a preferred embodiment such D-nucleotides can act as a spacer or a linker, which preferably binds modifications such as PEG and HES to the nucleic acids according to the present invention.
Within the scope of the present invention, in one embodiment the nucleic acids according to the invention also include those acids which are part of a longer nucleic acid, wherein these longer nucleic acids can include several parts, at least one part being a nucleic acid according to the present invention or a part thereof.
The other part or the other parts of these longer nucleic acids can either be a D-nucleic acid or a L-nucleic acid.
Any combination can be used in conjunction with the present invention and for the purposes and uses such as have been described herein for the nucleic acids according to the invention. This other part or these other parts of the longer nucleic acid can have a function that is different from the binding function, and in particular from the binding to HMGA protein. A possible function is to allow an interaction with other molecules, eego for the purposes of immobilisation, cross-linking, detection, amplification, modification or increasing the molecular weight.
In particular in this connection L-nucleic acids as used herein are nucleic acids which consist of L-nucleotides, and preferably consist completely of L-nucleotidese Accordingly, in particular D-nucleic acids as used herein are nucleic acids which consist of D-nucleotides, and preferably consist completely of D-nucleotideso Irrespective of whether the nucleic acid according to the invention consists of D-nucleotides, L-nucleotides or a combination of the two, the combination being for example a random combination or a defined sequence of regions which consist of at least one L-nucleotide and at least one D-nucleic acid, the nucleic acid can consist of one or more deoxyribonucleotides, ribonucleotides and combinations thereof, In a further aspect the present invention relates to a pharmaceutical composition which consists of at least one of the nucleic acids according to the invention in combination with one or more other nucleic acids, in which the other nucleic acid(s) preferably binds to target molecules other than HMGA protein or exerts a function different to that of the nucleic acids according to the invention, The construction of the nucleic acids according to the invention as L-nucleic acids is advantageous for several reasons. L-nucleic acids are enantiomers of naturally occurring nucleic acids. D-nucleic acids are however not very stable in aqueous solutions and in particular in biological systems and in biological samples, on account of the extensive presence of nucleaseso Naturally occurring nucleases, in particular nucleases from animal cells, are not able to break down L-nucleic acids. As a result of this the biological half-life of the L-nucleic acid in such a system, including the human and animal body, is significantly increasedo On account of the lack of degradability of L-nucleic acids no nuclease breakdown products are produced and thus no resultant side effects are observed. This aspect in fact demarcates L-nucleic acids from all other compounds that are used in the treatment of diseases and/or disorders and include the presence of HMGA or its causal involvemento L-nucleic acids that bind specifically to a target molecule through a mechanism different from the Watson-Crick base pairing, or aptamers which consist partly or completely of L-nucleic acids, in particular those parts of the aptamer that are involved in the binding of the aptamer to the target molecule, are termed spiegelmerse It is also within the scope of the present invention for the nucleic acids according to the invention to be in the form of single-strand or double-strand nucleic acids, regardless of whether they are present as D-nucleic acids, L-nucleic acids or D-L-nucleic acids, and whether they are DNA or RNA. Typically the nucleic acids according to the invention are single-strand nucleic acids, which on account of the primary sequence contain defined secondary structures and can therefore also form tertiary structures. The nucleic acids according to the invention may however also be double-stranded, in the sense that two strands which are complementary or partly complementary to one another are hybridised with one another. This imparts stability to the nucleic acids, which becomes important particularly if the nucleic acid exists in the naturally occurring D-form instead of the L-forzn.
The nucleic acids according to the invention can be modified. Such modifications can involve individual nucleotides of the nucleic acid and are well-known in the prior art. Examples of such a modification are described inter alia in Venkatesan N. et al. (2003) Curr Med Chem.
Oct;10(19)<1973-91; Kusser, W.(2000) J Biotechnol, 74: 27-38; Aurup, H. et al. (1994) .nTucleic Acids Res, 22, 20-4;
Cummins, L.L. et al, (1995) Nucleic Acids Res, 23, 2019-24; Eaton, B.E. et al. (1995) Chem Bio1, 2, 633-8; Green, L.S. et al., (1995) Chem Biol, 2, 683-95; Kawasaki, A.M.
et al., (1993) J Med Chem, 36, 831-41; Lesnik, E.A. et al., (1993) Biochemistry, 32, 7832-8; Miller, L.E. et al., (1993) J Physiol, 469, 213-43. Such a modification may for example be an H atom, a F atom or a 0-CH3 group or NH2 group at the 2' position of an individual nucleotide that is contained in the nucleic acid. Furthermore the nucleic acid according to the present invention can include at least one LNA nucleotide. In one embodiment the nucleic acid according to the present invention consists of LNA
nucleotides, and preferably completely of LNA nucleotides, In one embodiment the nucleic acids according to the present invention can be a multi-part nucleic acid. A
multi-part nucleic acid as used herein is a nucleic acid that consists of at least two nucleic acid strands. These at least two nucleic acid strands form a functional unit, the functional unit being a ligand for a target molecule.
The at least two nucleic acid strands can be derived from one of the nucleic acids according to the invention either by cleavage of the nucleic acid in order to produce two strands, or by synthesis from a nucleic acid corresponding to a first part of the total nucleic acid, iaeo nucleic acid according to the invention, and a further nucleic acid corresponding to the second part of the total nucleic acid. It is recognised that cleavage as well as synthesis can be used in order to produce a multi-part nucleic acid where more than the two strands described above by way of example can be present. In other words, the at least two nucleic acid strands are preferably different from two strands that are complementary to one another and hybridise with one another, although a complementarity can exist to a certain extent between the various nucleic acid parts.
The present inventors have established that the nucleic acids according to the present invention have a very advantageous KD value range or dissociation value range, and therefore a very advantageous binding constanto One way of determining the binding constant is to use an equilibrium binding assay, as is described in Example 1.
The KD value of the nucleic acids according to the invention is preferably less than 1 uM, A KD value of about 1~iM should be characteristic of a non-specific binding of a nucleic acid to a target. As will be recognised by those skilled in the art, the KD value of a group of compounds such as for example the nucleic acids according to the present invention varies within a certain range. The KD of about 1~iM mentioned above is a preferred upper limiting value for the KD value. The preferred lower limiting value for the KD of nucleic acids binding the target molecule can be about picomolar or less. It is within the scope of the present invention for the KD values of the individual nucleic acids which bind to HMGA, preferably to lie within this range. Preferred ranges can be selected by choosing a first number within this range and a second number within this range. Preferred upper values are 0<25 pM, 0.1 pM, and preferred lower values are 100 nM, 10 nM, 1 nM and 0.05 nM.
The nucleic acids according to the invention preferably bind to HMGAlb at 372C in solution with a dissociation constant KD<20 nM, as illustrated in Example 2.
The nucleic acids according to the present invention can be of arbitrary length, provided that they are still able to bind to the target molecule. It is recognised in the prior art that specific lengths of the nucleic acids according to the present invention are preferred.
Typically the length is between 15 and 120 nucleotideso It is also recognised by those skilled in the art that any whole number between 15 and 120 is a preferred possible length for the nucleic acids according to the present inventiono Preferred ranges for the length of the nucleic acids according to the present invention are lengths of about 20 to 100 nucleotides, about 20 to 80 nucleotides, about 20 to 60 nucleotides, about 20 to 50 nucleotides and about 30 to 50 nucleotides.
In one embodiment the nucleic acids according to the invention are present in modified form. A particularly preferred form of modification is PEGylation. In this, the modification of the nucleic acids according to the invention involves coupling with polyethylene glycol (PEG) or other groups.
On account of the high stability of the nucleic acids according to the invention, in particular in the embodiment in which these exist as L-nucleic acids, it is possible to administer the nucleic acids according to the invention directly to a patient requiring such a treatment. Preferably the nucleic acids according to the invention are prepared as a physiological solution for topical or systemic application.
Apart from the direct use of the nucleic acids according to the invention for the treatment, prevention and diagnosis of the diseases described herein, these can be present or used individually or in combination with others in a pharmaceutical composition. The pharmaceutical composition according to the present invention accordingly comprises at least one of the nucleic acids according to the present invention and preferably a pharmaceutically acceptable binder. Such a binder may be any known binder or one known in the field. In particular such a binder is any binder, as is described in connection with the production of the medicament, as disclosed herein. In a further embodiment the pharmaceutical composition includes a further pharmaceutically active agent. It is within the scope of the present invention for the medicament described herein to constitute the pharmaceutical composition as is described herein.
Preferably the pharmaceutical composition is intended for intravenous administration. It is however also within the scope of the present invention for such pharmaceutical compositions to be administered intramuscularly, intraperitoneally or subcutaneously. Other administration routes are orally or intranasally, in which connection that form of administration is preferred that is least invasive, but at the same time retains the effectiveness of the pharmaceutical composition and the pharmaceutically active agent.
The nucleic acids according to the invention are preferably contained as such, or in connection with the pharmaceutical composition according to the invention, dissolved in a pharmaceutically acceptable solvent. Such solvents are in particular those that are selected from the group comprising water, physiological saline, PBS or a glucose solution, in particular a 5% glucose solutiono Such a carrier can be for example water, buffer, PBS, glucose solution, preferably a 5% glucose solution (iso-osmotic), starch, sugars, gelatin or any other acceptable carrier substance. Such carriers are generally known to those skilled in the art in this field.
It is within the scope of the present invention for the pharmaceutical composition to contain at least one of the nucleic acids according to the invention in its various embodiments, including, but not restricted thereto, the nucleic acid as conjugate, as described herein.
In a further embodiment the medicament comprises a further pharmaceutically active agent. Such further pharmaceutical active agents are for example protease inhibitors, proliferation inhibitors and angiogenesis inhibitors and/or agents that have a cytostatic effect.
Alternatively or in addition, such a further pharmaceutically active agent is a further nucleic acid according to the present invention. Alternatively, the medicament comprises at least one or more nucleic acids that bind to a target molecule that is different from HMGA, or has a function that is different from one of the nucleic acids according to the present inventiona The pharmaceutical composition according to the present invention can be used for the treatment, diagnosis and/or prevention of each of the diseases or disorders described herein<
In a further aspect the present invention relates to a method for the treatment of a living organism requiring such a treatment, wherein the method includes the administration of a pharmaceutically active amount of at least one of the nucleic acids according to the present invention. In one embodiment the living organism suffers from a disease, or there is a risk that it will suffer from such a disease, the disease being one of those mentioned herein, in particular a disease that is described in connection with the use of one of the nucleic acids according to the present invention for the production of a medicament.
Although the use of the nucleic acids according to the invention already follows from the involvement illustrated above of HMGA proteins in the various diseases and states, this aspect will be discussed further hereinafter for illustrative purposes.
HMGA proteins and their genes have in particular become increasingly involved in the diagnosis and prognosis of neoplastic diseases and have been proposed as potential biomarkers. In healthy tissue the expression level of HMGAla/b proteins is very low, if detectable at all.
Raised HMGAla/b protein expression is characteristic of the phenotype of a large number of tumours and metastases of very many types of cancer (Sarhadi et al. 2006, Balcercak et al. 2005, Briese et al. 2006, Chang et a1.
2005, Peters et al. 2005, Sato et al. 2005, Chiappetta et a1.2004, Li et al. 2004 , Chuma et al. 2004 , Donato et al. 2004, Czyz et al. 2004, Kettunen et al. 2004, Lee et al. 2004, Chen et al. 2004, Abe et al. 2003, Blacerczak et al. 2003, Flohr et al. 2003 , Masciullo et al. 2003, Nam et al. 2003, Pierantoni et al. 2003) . High HMGA protein expression correlates significantly with a poor prognosis and the formation of inetastases. The detection of the HMGAla/b expression level in biopsies and its histological characterisation is a diagnostic approach to the early detection, prognosis and identification of neoplastic diseases, in particular the diseases and conditions discussed hereinbeforee Furthermore an association between HMGA1 proteins and arteriosclerotic plaques is described in the literature (Schlueter et al. 2005e)o HMGA1 regulates CD44, one of the principal target genes for the formation of plaques. In this connection it was found, compared to the surrounding tissue, that the affected regions such as neo-intimal, vascular smooth muscle cells, macrophages and new blood vessels have a high expression of HMGAlo HMGA1 appears therefore to be one of the mediators in the formation of plaque and is thus a target molecule for diagnostic purposes.
The L-nucleic acids described here and in particular the spiegelmers, which bind HMGAla/b, can within the scope of the methods known to the person skilled in the art be used in a similar way to antibodieso Up to now only very few specific (differentiating) and affine antibodies against HMGA1 have been identified and are commercially obtainable. This appears to be due to the non-existent secondary structure of HMGA1, which is not a suitable target for the MHC complex in the generation of antibodies, Against this background it was however surprisingly found that the biotinylated HMGAla/b-binding spiegelmer 51-bio-NOX-A50 recognises in the western blot procedure HMGAla/b as individual bands in cancer cell lineso Furthermore, as described in Example 2, recombinantly expressed HMGAlb protein could be detected. The detection of the biotinylated spiegelmer is carried out for example by an anti-biotin antibody conjugated by means of horseradish peroxidase (HRP), The in vivo diagnosis of HMGAla/b is a further approach, in which the nucleic acids according to the invention can be used. Tumours and metastases are often embedded in necrotic tumour cells, which release HMGAla/b to the surrounding tissue. The detection of the extracellular HMGAla/b is one approach to the diagnosis of tumours and metastases embedded in healthy tissue.
As preferably used herein, a diagnostic tool or diagnostic agent or diagnostic means is able to detect either directly or indirectly an HMGA protein, preferably HMGAla/b, as described herein, and preferably HMGAla/b as described herein, in connection with the various disorders and diseases. The diagnostic tool is suitable for detecting and/or searching for any of the diseases and conditions described herein. Such a detection is possible by the binding of the nucleic acids according to the present invention to HMGAla/b. Such a binding can be detected either directly or indirectly. The corresponding methods and means are known to those skilled in the art in this f ield. The nucleic acids according to the present invention can inter alia be labelled, which permits the detection of the nucleic acids according to the present invention, preferably the nucleic acid that is bound or can bind to HMGA protein and preferably HGNlAla/b. Such a labelling is preferably selected from the group comprising radioactive, enzymatic and fluorescence labelling. In principle all known tests that have been developed for antibodies can be adapted to the nucleic acids according to the present invention, the target molecule-binding antibody being replaced by a target molecule-binding nucleic acido In antibody tests which employ unlabelled target molecule-binding antibodies, the detection is preferably performed with a secondary antibody, which has been modified with radioactive, enzymatic or fluorescence labels and binds to the target molecule-binding antibody at its Fc fragment. In the case of a nucleic acid, preferably a nucleic acid according to the present invention, the nucleic acid is modified with such a label, the said label preferably being selected from the group consisting of biotin, CY-3 and CY-5, and such a label is detected by an antibody directed against such a label, for example an anti-biotin antibody, an anti-CY-3 antibody or an anti-CY-5 antibody, or in the case where the label is biotin, the label is detected by streptavidin or avidin, which naturally binds to biotino Such an antibody, i,eo streptavidin or avidin, is in turn preferably modified with a corresponding label, for example a radioactive, enzymatic or fluorescence label, similarly to a secondary antibody.
In a further embodiment the nucleic acids according to the present invention are detected or analysed by a second detection agent, this detection agent being a molecular beacon. The technique of molecular beacons is known to those skilled in the art in this field. In brief, these molecular beacons are nucleic acid probes which are a reverse complement of the nucleic acid probe to be detected, and accordingly hybridise with a part of the nucleic acid probe to be detected. After the binding of the nucleic acid probe the fluorophore groups of the molecular beacon are separated from one another, which leads to a change in the fluorescence signal, preferably a change in intensity. This change correlates with the amount of nucleic acid probe that is present.
It is within the scope of the present invention that the nucleic acids according to the invention can appropriately be used as L-nucleic acids within the scope of the various aspects disclosed herein.
The nucleic acids according to the invention can furthermore be used as starting material for the design of pharmaceutical active substances (drug design). In principle there are two possible approaches to this problem. One approach consists in screening libraries of compounds, wherein such libraries of compounds are preferably libraries of low molecular weight compounds (low or small molecules). Such libraries are known to those skilled in the art in this field. In one embodiment the screening is a high throughput screening. Preferably high throughput screening is fast, efficient, and is carried out as a trial-and-error evaluation of active substances in a target molecule-based assay.
Alternatively, according to the present invention the nucleic acids can be used for the rational design of active substances. Preferably the rational design of active substances is the design of a pharmaceutical active substance candidate. Starting from the three-dimensional structure of the target molecule, which is normally determined by methods such as X-ray structure analysis or nuclear magnetic resonance spectroscopy (IVNIR), computer programs are used to search through data banks containing structures of a large number of different chemical compounds. The selection is carried out by computer. The selected compounds are in addition tested in the laboratory, The rational design of active substances can take as its starting point any of the nucleic acids according to the present invention, and comprises a structure, in particular a three-dimensional structure, which is similar to the structure of the nucleic acid(s) according to the invention or is identical to that part of the structure of the nucleic acid(s) according to the invention that mediates the binding to HMG proteins. In any case, such a structure also exhibits the same or at least a similar binding behaviour to the nucleic acid(s) according to the invention. In either a further step or as an alternative step, in the rational design of active substances the preferably three-dimensional structure of those parts of the nucleic acids binding to HMG proteins is imitated by chemical groups, which are preferably different to nucleotides and nucleic acids. By means of this imitation, also termed mimicry, a compound can be constructed which is different from the nucleic acid or the nucleic acids which was/were used as starting materials for the rational design of the active substance.
Such a compound or active substance is preferably a small molecule or a peptide, In the case of screening libraries of compounds using competitive tests which are known to those skilled in the art in the field, suitable HMG analogues, HMG agonists and HMG antagonists can be founda Such competitive assays can be designed as follows. The nucleic acid according to the invention, preferably a spiegelmer, i,e, a L-nucleic acid binding the target molecule, is coupled to a preferably solid phase. In order to identify HMG analogues, a labelled HMG protein is added to the test system.
Alternatively, the HMG protein could also be coupled to a solid phase and the nucleic acid according to the invention could be labelled, A potential analogue or a potential agonist or antagonist would compete with the HMG
molecules which bind to the spiegelmer, which would result in a decrease in the signal received from the corresponding label. The screening for agonists or antagonists can include the use of a cell culture test system which is known to those skilled in the art in the field.
In a further aspect the nucleic acids according to the invention can, on account of their characteristic binding behaviour to HMG protein, be used for target (target molecule) validation. The nucleic acids according to the invention can be used in an ex vivo organ model in order to study the function of HMG protein. In principle there exist ex vivo models in which HMG agonists/antagonists can be tested.
A kit according to the present invention can comprise at least one or more of the nucleic acids according to the invention. In addition the kit can include at least one or more positive or negative controls. HMG protein against which the nucleic acid according to the invention has been screened, or to which this binds, preferably in liquid form, can be used as positive control. As negative control there can be used inter alia a peptide that behaves as regards its biophysical properties similarly to HMG protein, but which is not recognised by the nucleic acids according to the invention, or a peptide can be used having the same amino acid composition but a different sequence to HMG protein.
Furthermore the kit can include one or more buffers. The various constituents can be present in the kit in dry or lyophilised form, or dissolved in a liquid. The kit can include one or more containers, which in turn can contain one or more of the constituents of the kit. Preferably the vessels contain reaction batches, such as are necessary for a single execution of an experiment using one or more constituents of the kit.
It will be acknowledged that, unless stated to the contrary, the sequences listed herein are given in the 5'-3' direction. It will furthermore be seen that the term "the two sections hybridise with one another" is understood herein to mean that the sections can hybridise in vitro on the basis of general base pairing rules, or that the sections hybridise or can hybridise under the conditions of use, but are not necessarily hybridised with one another or are present in hybridised form under the conditions of use.
The various SEQ,ID,, the chemical structure of the nucleic acids as disclosed herein and the target molecule HMGAla/1b as used herein, the actual sequences and the internal references are summarised in the following table.
U u u ~/ u c~ ~ ~ c~ ~ Uu~ uv c~
~:)Uu u ca u u 0 u u U dd C~ ~r~ ~r44((-J55 !.d ~/ / ~p r~/~
!~ \r.o-Jy (d b/ S./ V ~d ~/
u u ~t~rr~D or1y ~:)cabq <ta c~ u~~(-~~ c/a~
'p7 !
VO SG 4l 4~ u u u !/
yr~ U C~ U C~ C7 d C~
u !J
u C) u u u (D (D u O
u Ljn 0 u C.~ CD
u 0 cJ ca u c~ u CD p p u ca 0 c~ d C~ C~ ~ c~ c~ c~
0 C~ C7 OC) UC~ C~ uuu O(D C~
C) 7~ ~ ~ ~ ~ ~ z 1~5 -0 -u -V -0) 4) tn oA on on a4 W an o4 bn on on c4 aa on an w Q a) a) u a>
~ ri. E. o r:).
aa a a a a a a~a a a a.a a a a N
w ~ 00 U
~
z z z z z z Z
~ u m w m m C~ ~d .~ N N N N N N N N N N N N N N N
e'r1 M ey M ePl e+1 cP1 e''1 c 1 N tN N N N e<1 C112 N M - - - - .-a .-a ~
Cl C4 >
cn ~
CZ
ri (D cl~
uo UO
P. cn no <
u n r40 UO CO U
.
e4 a a a a ~
aa _ o 6 ~ C5 ~ ~ ~ W
M ~_ ~ ca fl ~ c* m rv ~ ~ ~ O
z z z z ia N Cl v~ f,l E-, C-7 F-UO ~ :D u m ~ u (D
<
z 6, M r~ ' 1 I
C~ t~l ~l fil C~1 (~l fV Pl M M M M
u v ca u u u U v d C7 Q d ~}
<~aU u c c~
u ~D
m, ~ 4~ \d ' 4/ '1 W !~ o-~
U U C~ u Q~
u u u ~ u~ T~, ~~y VJ
~d ~J ~h=dW ~ro-km9y ~Y~rl J ~/< u ~C] r~.~I LJ 4~ 41 d! kA ~d s p~ ~d ~.J
u u uuo ~D ur~ u d u ua, r~
c7 d C~ a~C~~g UCa~Ca~ ~!
0 CD y~, t~ e7 ~ c~!~ ~py ro~wy ry c~q !~ J ~o-y 4õd .rdry day dW 4~ !/a4o-./y Cr~'~
u 4d W '/ 4J !J ./
C) C~ C~ CD U
co C~ C7 C~ S (-1 0 U C~ U U C) U t C7 U d ~:) C7 < <
u u u u t-~u Q Ca ~7 d C7 CJ ~Dou CJ u LJ~ L~
u uuu u Cl a> aa aa a~ a~ a~ c~ aa e~ a~ a~ ~ e~ aa ea ~
cEd y ~ .~ .~ .. .~ ~. ~ .~ .r ..~ .e. .. .., .~ ., ..~
d~ d~~ d~ d~ d d d d d~
M
f'Pl ao Z
0 ~ z 0 ~ ~ ~ r~i M
~ n n M M
cPi ri d N ~ N e=i ri M M
w t7 c~ ua c7 C~ ~~ w M M M M M M M M N N N N N N M M
~
~d ~ l~ 00 1 N M ~t Ln ~,o 00 C~
It is within the scope of the present invention that, if no sequences are explicitly given for the individual sections of the nucleic acids according to the invention, these can be freely chosen according to the technical teaching disclosed herein, i.e. can be chosen so that they exhibit the necessary binding behaviour to the respective target molecule and/or are able to form the structures, in particular secondary structures, described herein.
Furthermore, it is within the scope of preferred embodiments of the present invention that in the case where, in sequences that are identified as RNA sequences, T
is given instead of U, then T shall denote U.
The present invention is described in more detail hereinafter with the aid of the following Figures and Examples, which disclose further features, embodiments and advantages. In this connection:
Fig. 1A shows aptamers generated by in vitro selection against D-21AS-HMGAla/b, which bind the 21AS-HMGA1a/b domain;
Fig. 1B is a representation of the identified, repeatedly occurring sequence regions of the aptamers generated by in vitro selection against D-21AS-HMGAla/b, which bind the 21AS-HMGAla/b domain;
Fig. 2 is a sequence comparison of HMGAla/b and HMGA2;
Fig. 3 is a shortening of HMGAla/b-binding aptamer NOX-f;
Fig. 4 shows the binding properties of shortened HMGAla/b-binding aptamer NOX-f;
Fig. 5 shows a competition assay for measuring the binding of HMGA to the double-strand natural target DNA in the multi-well plate assay; the binding of the spiegelmer competes with the binding of the recombinant HMGAlb to the biotinylated dsDNA (AT hook motif). The detection of the bound HMGAlb is carried out through the His-Tag via nickel HRP, which converts a substrate into a fluorescing signal;
Fig. 6 shows a comparison of spiegelmer NOX-A and spiegelmer NOX-f (48nt; 33nt) in the competitive multi-well plate assay; in the plate assay, spiegelmer NOX-A as well as spiegelmer NOX-f and its shortened variant spiegelmer NOX-f33 prevent the binding of recombinant HMGAlb to its naturally occurring binding partner in the low nanomolar range.
Fig. 7 shows the activity of 2kDa-PEG-coupled spiegelmer NOX-A as well as non-functional control spiegelmer in the competitive multi-well plate assay; the PEGylated spiegelmer NOX-A competes with the binding of recombinant HMGAlb to the AT
hook motif of the dsDNA with an IC50 of 15nM; the inverse control spiegelmer of NOX-A shows at high spiegelmer concentrations a non-specific interaction with HMGAlb;
Fig. 8 shows a western blot; detection of immobilised HMGAlb by biotinylated spiegelmer; recombinant HMGAlb migrates in the electrophoretic field like a 20kDa large protein and can be recognised at low concentration (3nM) by the biotinylated spiegelmer (here with the example of NOX-A); an inverse control spiegelmer could not recognise HGMGAlb;
Fig. 9 shows the activity of free and PEGylated spiegelmer NOX-A in the competitive multi-well plate assay;
Fig< 10 is an investigation of the packing of PEGylated spiegelmer in micelles in the "RiboGreen exclusion assay ";
Fig. 11 shows the stability of PEI spiegelmer micelles in the "RiboGreen exclusion assay";
Fig. 12 shows the efficient uptake of spiegelmer packed in PEI micelles, in particular a comparison of the transfection of "naked" spiegelmer compared to spiegelmers packed in micelles, with the example of the spiegelmer NOX-A-3'PEG2kDa,; the cells which have been transfected with spiegelmer micelles exhibited at a lower setting of the camera sensitivity (camera gain) a stronger fluorescence in the cytosol compared with cells that had been incubated only with pure spiegelmer; the efficiency with both transfection methods is >95%;
Fig. 13 shows the release of spiegelmer from the endosomal compartment; spiegelmer micelles exhibited a significantly higher fluorescence compared to pure spiegelmer; spiegelmer micelles exhibited a point-like, perinuclear, and also cytoplasmic distribution pattern; the point-like distribution indicates a localisation in endosomal compartments; the diffuse distribution in the cytosol and on the plasma membrane indicates spiegelmer released from endosomes;
Fig. 14 is a proliferation assay with "naked" spiegelmer;
dose-dependent inhibition of the proliferation of MCF-7 cells at high spiegelmer concentrations after 2 days in the cell culture medium (quantification via resazurin);
Fig. 15 shows the proliferation of H1299 cells ("non-small cell lung cancer") after treatment with PEI
packed NOX-A-2kDa PEG; inhibition of the proliferation of H-1299 cells at 1pM spiegelmer, applied as PEI-spiegelmer micelles (N/P 2.5);
NOX-A showed a slight inhibition of the proliferation compared to the control spiegelmer;
Fig. 16 shows the inhibition of the HMGAla/b-induced cdc25a gene expression, detected by quantitative RT-PCR; determination of the specific inhibition of the cdc25a mRNA expression in H-1299 cells by 1pM NOX-A spiegelmer micelles (N/P 2.5) by means of RT-PCR;
Fig. 17 shows the dose-dependent inhibition of the cdc25a mRNA expression by spiegelmer NOX-A;
quantification of the dose-dependent inhibition of the cdc25a mRNA expression in H1299 cells by means of RT-PCR; NOX-A spiegelmer micelles (N/P
2,5) showed starting at 250nM a specific inhibition of the cdc25a mRNA expression; at a concentration >41aNt a non-specific effect of the control spiegelmer was found, as well as toxic effects due to the polyethyleneimine (PEI) at >
10pM (data not shown) ;
Fig. 18 shows the inhibition of the tumour growth in the xenograft model in naked mice by the spiegelmer NOX-A; inhibition of the tumour growth after subcutaneous injection of PSN-1 cells by 2mg/kg spiegelmer micelles (N/P 2.5). Spiegelmer NOX-A
produced a significant reduction in tumour growth;
Fig. 19 shows the statistical analysis of the data from the xenograft experiment; inhibition of the tumour growth after subcutaneous injection of PS1V-1 cells by 2mg/kg spiegelmer micelles (N/P
2,5); end point analysis and representation as box-and-whisker plot. NOX-A produced a highly significant reduction of the tumour growth (p=0o0098 compared to PBS and p=0.022 compared to inverse control spiegelmer);
Fig. 20 shows the tissue distribution of spiegelmer NOX-A
in the xenograft experiment; quantitative analysis of the distribution of spiegelmer NOX-A
in the plasma and tissues; a high concentration of spiegelmer NOX-A could be detected in the tumour tissue, compared to the other tissues and plasma.
Fig. 21 shows tissue distribution of spiegelmer packed in micelles and unpacked spiegelmer, 24 and 96 hours after the last injection in the xenograft experiment; quantitative analysis of the distribution of non-functional spiegelmers in plasma and tissues; in the tumour tissue a significantly raised concentration of spiegelmer could be detected in the case of a spiegelmer packed in micelles compared to the other tissues and plasma, after 24 hours and 96 hours.
Fig. 22: shows distribution of spiegelmer packed in micelles and unpacked spiegelmer in plasma and in the tumour 24 and 96 hours after the last injection in the xenograft experiment;
quantitative analysis of the distribution of a non-functional spiegelmer in plasma and tumour;
in the tumour tissue a significantly raised concentration of spiegelmer could be detected in the case of a spiegelmer packed in micelles compared to unpacked spiegelmer, after 24 hours and 96 hours.
Zz l 1a ENGAla/~~~ind.~~~ ~pi~~~lmers 1 HNGAIaIb bi~~~~~ ~equences 5 The HMGAla/b-binding RNA spiegelmers were generated by in vitro selection against D-21AS-HMGAla/b and subsequent shortening steps. The generated aptamers, which bind the 21AS-HMGAla/b domain, are shown in Fig. 1A.
10 1.1.1 Ranking and aptamer level The different clones (see Fig. 1A) were prepared as aptamers (D-RNA) by means of standard phosphoramidite synthesis and were radioactively labelled at the 5' end by kinasing (see below) . The clones were then analysed as regards their affinity and activity by means of equilibrium binding assay at two concentrations of D-bio-21aa HMGAla/b.
Radioactive labelling by kinasing:
Substanc Efinal~
RNA 5 uM
T4 forward reaction buffer (Invitrogen) lx T4 polynucleotide kinase (Invitrogen) 10 U/10 I.zlReaction batch ['Y-32P] -ATP I 111/10 1-11Reaction batch The reaction ran for 1 hour at 372C and was then stopped by heating (10 minutes at 652C). The separation of radioactive nucleotides from labelled oligonucleotides was carried out by an analytical polyacrylamide gel electrophoresis (PAGE) (see hereinafter). A "crush-and-soak" gel elution was then carried out with ammonium acetate and precipitation with ethanol (see hereinafter).
The amount of purified RNA was estimated from the radioactivity of the pellets (after the precipitation) compared to the radioactivity of the cut-out strip.
Po~~~~~~lamide gal al ctropho~~sis (PAGE) For the preparative purification of oligonucleotides, 1/2 to 2 volumes of concentrated sample buffer for denaturing PAGE
were added to the reaction batches. In addition large-scale standards were prepared as necessary (each 250 pmole) and taken up in sample buf fer o The batches were denatured for 5 minutes at 95 C and cooled on iceo A preparative, denaturing 7% or 10% PAA gel (200 x 200 x 1>5 mm) was preheated (ca, 1 hour) by applying a maximum voltage of 600 V at 40-50 W. After rinsing the cups with lx TBE the samples were plotted. After completion of the separation (50 minutes at 50 W) the gel was placed on a fluorescing thin-layer chromatography plate protected by transparent film (dye 60F254). The bands were visualised as shadows ("UV
shadowing") by means of UV light (254 nm) and were cut out with a scalpel. A"crush-and-soak" gel elution with ammonium acetate was then performedo eeCrush and-s ak gal olutbou To elute oligonucleotides from PAA gels, after comminuting the cut-out PAA gel strips 500 ul of ammoniuin acetate (2 M) was added using a pipette tip or a spatulao The "crush-and-soak" elution was carried out 2 x 1,5 hours at 689C in a thermoshaker (1000 rpm), The supernatants were freed from gel residues by "Ultrafree-MC" small columns (Millipore/Amicon, Schwalbach, Germany) in a table centrifuge (16,100 x g)o The RNA eluted in this way was then desalted by precipitation with ethanol.
Ethan l precipitation For the ethanol precipitation 1-2 ~al of glycogen were used as precipitation auxiliary. After adding 2e5 volumes of absolute ethanol and vortexing, the oligonucleotides were precipitated for 30 minutes at -802C and centrifuged off for 30 minutes at 16,100 g, 42C. The pellet was washed once with 70% ethanol and centrifuged for 5 minutes at 16,100 g, 42C.
Recording f binding bsothe~s in the (sqgil~~~ium binding assay 2 pmole of each of the 5' radioactively labelled aptamers were complexed in biotinyl-D-HMGAla/b-21mer (EPSEVPTPKRPRGRPKGSKNK [Seq> ID. 17]; see Fig. 2), produced by Bachem (Weil am Rhein, Germany). Solutions in the concentration range 1 - 3000 nM (or for the two-point measurement with 300 nM and 30 nM or 100 nM and 10 nM
peptide) were incubated for 1 hour at 372C in selection buffer (10mM Tris HC1 pH7>4, 5mM KC1, 0,8mM MgC12, 0,1%
Tween). A solution without biotinylated D-HMGAla/b-21mer served as background control. The peptide and complexes were then immobilised within 30 minutes at 372C with 10 ~xl of streptavidin UltraLink gel. The radioactivity of the suspension was measured. The supernatant was removed. The matrix was then washed once with 100 jal of selection buffer and then precipitated with selection buffer. By measuring the radioactivity the aptamer fraction present together with biotinyl-D-HMGAla/b-21mer in the complex was determined for each peptide concentration. The dissociation constants of the active species and the proportion of active molecules were determined by graphical plotting and fit (GraFit, Version 4Ø10, Erithacus Software), Results For all clones synthesised as aptamers (D-RNA) a dissociation constant for the binding to the 21 amino acid-long D fragment of HMGAla/b (Biotinyl-D-HMGAla/b-21mer) of 8 - 22 nM was determined in the equilibrium binding assay (Fig. 1A)o 1.1.2 Shortening in Example 132-B3 All selection candidates exhibited a repetitively occurring sequence motif GGGCG or GGGUG or GGGAG, which is stabilised at the 51 end and at the 3' end by a helix/stem motif (Fig.
3), An analysis of the probable structure and precipitation of the RNA aptamers according to Zuker (Nucleic Acids Res.
2003 Jul 1 31(13)03406-15) showed that the predetermined stem/helix structure had lengthened in some cases (132-C3, 132-B3, 132-C4, 132-E2, 132-A2, 132-Hl, 132-Fl, 122-G2, 122-E2, see Fig. 1A). This stem-Helix structure formed the basis for the further shortening of these candidates. This further shortening of the candidates was carried out by identifying and stabilising the minimal binding motif by precipitation analysis followed by deletion analysis of the synthetic D-RNAs with respect to the binding to the HMGAla/b fragment. These binding properties were determined by equilibrium binding assay. Fig. 3 shows by way of example in the candidate NOX-f (132-B3) the shortening of the aptamer on the basis of the stabilising stem structure, which can be found in lengthened form in the candidates 132-C3, 132-B3, 132-C4, 132-E2, 132-A2, 132-H1, 132-Fl, 122-G2, 122-E2 (see Fig, 1A), A shortening to a 32 nucleotide-long aptamer variant of NOX-f with a 6 nucleotide-long stem (NOX-f 32nt) did not lead to any loss of the binding properties to the 21aa HMGAla/b fragment (Figs. 3 and 4). The artificial insertion of an adenosine at the third position of the 5'- position stem led to a theoretical formation of a 7 nucleotide-long stem without a looped-out region and served to complete the stem in the 3' region (NOX-f 33nt, Figs. 3 and 4). The measurement of the binding properties (affinity and activity) by means of equilibrium binding assay on the 21 amino acid-long domain of HMGAla/b was not influenced by these changes.
The sequences 132-G2, 122-Al, 122-Cl, 122-B2 and 122-B4 have on the other hand at the 5' end and 3' end of the repetitively occurring sequence motif (GGGCG or GGGUG or GGGAG) a significantly shorter stem structure. A
shortening of the stem structure led to a binding loss. A
possible shortening of the central region, which is longer for these sequences, between the repetitive sequence motif (GGGCG or GGGUG or GGGAG) was not carried out.
The Seq. IDs of the aptamer sequences of the HMGA-binding nucleic acids disclosed herein are as follows:
S qo ID Xnt rx~al Refer mm~S RNA/Paptid 34 132-C3, NOX-h D-RNA (aptamer) 35 132-B3, NOX-f (48nt) D-RNA (aptamer) 36 132-C4 D-RNA (aptamer) 37 132-E2 D-RNA (aptamer) 38 132-A2 D-RNA (aptamer) 39 132-Hl, NOX-i D-RNA (aptamer) 40 132-Fl D-RNA (aptamer) 41 132-G2, NOX-g D-RNA (aptamer) 42 122-Al, NOX-A D-RNA (aptamer) 43 122-Cl, NOX-B D-RNA (aptamer) 44 122-B2 D-RNA (aptamer) 45 122-E2, NOX-C D-RNA (aptamer) 46 122-G2, NOX-E D-RNA (aptamer) 47 122-B4, NOX-D n-RNA (aptamer) 48 132-B3 32nt, NOX-f 32nt D-RNA (aptamer) 49 132-B3 33nt, NOX-f 33nt D-RNA (aptamer) As has already been discussed herein and is known to those skilled in the art in this field the enantiomer, consisting of L-nucleotides, of an aptamer, i,e, of a D-nucleic acid which was generated against a D-peptide, binds to the mirror-image enantiomer of the D-peptide, ioeo the naturally occurring L-peptide< This L-nucleic acid is herein also referred to as spiegelmer and otherwise exhibits in principle the same binding properties as the aptamer.
1,2 Characteristic properties of HMGA/b-binding spiegelmers 1,2a1 Repetitive sequence elements: Box Al and Box A2 A repetitive sequence element of the sequence GGGCG or GGGUG or GGGAG is characteristic of all spiegelmers that bind to HMGAla/bo This sequence element appears twice in HMGA1a/b-binding spiegelmers (Figs. 1A and 1B). The sequence element lying closer to the 5' end of the spiegelmers is herein referred to as Box A1o The sequence element lying closer to the 3' end of the spiegelmers is on the other hand referred to herein as Box A2. Box Al and Box A2 and their mutual arrangement probably represent the decisive feature of HMGAla/b-binding spiegelmers.
1a2>2 Sequence section between Box Al and Box A2 Between Box Al and Box A2 there is either a sequence section with a length of six to seven nucleic acids or 12 to 22 nucleotides (Figs. 1A and 1B)o Since these sequence sections differ not only in their length, they are discussed separately.
Case 1: Sequence section comprises six to seven nucleotides If the sequence section lying between Box Al and Box A2 has a length of six nucleotides, then the sequence section exhibits the sequence UGGUUG, UGGCUG, CGGUUG, AGGUUG or GUGUAA. An insertion of one nucleotide (uracil) into the sequence CGGUUG, which leads to the sequence CGGUUUG, has neither a negative nor a positive influence on the binding properties of the spiegelmers.
Case 2: Sequence section comprises 12 to 22 nucleotides If the sequence section lying between Box Al and Box A2 has a length of 12 to 22 nucleotides, then this sequence section comprises two sequence regions of equal length, which can possibly hybridise with one another (Helix C).
The hybridisation is in this case effected by in each case three to six nucleotides. Three to five unpaired nucleotides are located between the nucleotides forming the Helix C. One to three nucleotides are present unpaired between the 3' end of Box Al and the 5' end of Helix C.
One to five nucleotides can be present unpaired between the 3' end of Helix C and the 5' end of Box A2.
1.2.3 Helical structure at the 5' end and 3' end of the spiegelmers All HMGAla/b-binding spiegelmers are characterised at their 5' and 3' ends by sequence sections which can hybridise with one another (Helix Al and Helix A2, (Figs. 1A and 1B)o The number of nucleotides hybridising with one another in each case can vary from four to eight. In this connection, this presumably double-strand region can extend to the 5' end of Box Al and the 3' end of Box A2. Should this not be the case, then Box Al and Box A2 can be flanked by nucleotides that additionally hybridise with one another (Helix B1 and Helix B2). This can involve regions of in each case four to eight nucleotides (Figs. 1A and 1B).
Within the scope of the invention forming the basis of the present application, various classes of nucleic acids and in particular L-nucleic acids which bind to the target molecule have been identified. The following illustration and description of these classes, which are herein also termed cases, is to this extent an integral part of the present invention. For each class their principal structure and exemplary L-nucleic acids for this class are specified hereinafter using the respective abbreviations of the L-nucleic acids.
~~~e Io 132 C3o 132-B3o 132-Cd 132 E2a 132 A2 132-H1, 132 Fl9 126 G2p 132 B3 32nt, 136 E3 33nt Helix Al-NX-Ealix Bl N6N7Box A1 1N2GN8N3N4N5BOX A2G-Ny-Helgx B2-NZ-Helix A2 (Cas IA) or Helix A1-NX-~~~iy. BI-N6N7 Box A1 1N2GN$N3N4N5BOX A2 elix B2mNZ-Helix A2 (~~~s IB) Nl = U, C, A, G;
N2 = G, U;
N3 = U, C;
N4 = U, A;
N5 = G, A;
N6 = G, A, U;
N7 = G, U;
N8 = U or no nucleotide;
NX = zero to five nucleotides;
NY = zero or six nucleotides;
Nz, = zero to six nucleotides;
Box A1 = Box A2 = GGGCG or GGGUG or GGGAG;
Helix Al and Helix A2 = in each case four to eight nucleotides, which completely or partly hybridise with one another, in which the sum of the in each case mutually hybridising nucleotides of Helix Al and Helix A2 and Helix BI agad Helix B2 is 10 to 12 nucleotides;
Helix Bl amd Helix B2 = in each case four to eight nucleotides, which hybridise with one another, in which the sum of the in each case mutually hybridising nucleotides of Helix Al and Helix A2 and Helix BI and Helix B2 is 10 to 12 nucleotides.
The molecules are active also after the shortening at the 5' end and at the 3' end. After the removal of the Helix Al and A2 as well as the regions N6N7 and GNy the shortened molecules retain their binding properties. This was demonstrated for the shortened variants 132-B3 32nt (NOX-f 32nt) and 132-B3 33nt (NOX-f 33nt) (see Figs. 3 and 4).
Case 2Aa 132-G2a 122-A1 122 C12 122 B2o 122 B4 Helix A1-I~Ta Box A1 -Nb ~Helix C10-Nc4Helix C2a-Nd Box A2 -G-Ne-Helix A2 Na = one to five nucleotides Nb = three nucleotides Nc = three to five nucleotides Nd = two to five nucleotides Ne = one to two nucleotides, preferably A or UU
Box A1 = Box A2 = GGGCG or GGGUG or GGGAG
Helix Al and Helix A2 = in each case five to six nucleotides, which completely or partly hybridise with one another, IHelix-C1 und ~Helix C2~ = in each case five to six -- - - - - - - - - - - - - - -nucleotides, which hybridise with one anothero Case 2Bs 122-E2 aoo a omom4 Helix Al-1Vi-Selix BI-Nj Box Al-A-eHelix C1'-1~T~ pHelix C2g-G ox A2-G-Relix B2-A-Helix A2 Ni = two nucleotides, preferably CA
Nj = two nucleotides, preferably AG
N, = four nucleotides, preferably GAUG
Box A1 = Box A2 = GGGCG or GGGUG or GGGAG
Helix Al and Helix A2 = in each case six nucleotides, which hybridise with one another, ~~li~ BI ~nd Helix B2 = in each case five nucleotides, which hybridise with one another, gHelixoCl and eHelix C2a = in each case three nucleotides, which hybridise with one another.
~xample 2g Domain Approach 2e1 Determination of the interaction of HMGAla/b spiegelmers and recombinant HMGAlb in the competition assay Execution/Method Cloning of Ris6m~~~elled ~Alb The BD-FreedomTM ORF clone GH00552L1,0 (high mobility group AT hookl) with the sequence coding for HMGAlb was purchased from BioCat Heidelberg. The sequence had already been changed therein so that the stop codon is converted into a codon coding for leucine, in order to permit C-terminal fusions. The sequence of the clone corresponds generally to the sequence stored in the RefSeq data bank under No.
NM002131. The sequence coding for HNlGAlb was amplified by means of a standard PCR with the primers HMG_fwdl (TCGACACCATGGGTGAGTC, SeqeID 34) and HNlG_revl (GTCTAGAAAGCTTCCCAACTG, Seq,ID 35)a In this connection the base after ATG was changed from A to G, in order thereby to introduce a NcoI interface. The PCR product was cleaved according to the manufacturer's instructions with the restriction enzymes NcoI and HindIIl (both from NEB, Frankfurt am Main, Germany) and purified via an agarose gel. The vector pH02d (Fasshauer et al. (1997) J.Biol.Chem. 272e28036 - 28041)) was similarly cleaved with NcoI and HindliI and purified via an agarose gel. The Vector pH02d permits the expression of a protein fused to the C-terminal end with a sequence of six histidine residues (His6-tag), under the control of a T7-promotor (Fasshauer et al., 1997, JBC 272028036).
The purified and cleaved PCR product was ligated into the prepared vector overnight at 15 C with the aid of a T4 ligase, corresponding to the manufacturer's instructions 5(MBI Fermentas, St. Leon-Roth, Germany)o Bacteria of strain DH5~ were transformed with the ligation producto The correctness of the plasmids from obtained colonies was checked by sequencing. The fusion protein HMGAlb-His6 coded by pHO2d/HMGAlb has, compared to the natural HMGAlb protein, a glycine (G) instead of serine (S) at position 2, and after the C-terminal glutamine (Q) a leucine (L) (see above), followed by five further amino acids (G S L N S) (coded by the vector), to which the six histidines (H) are joined.
Expressaon and Purification of HHGIb His6 For the expression of the fusion protein bacteria of strain BL21 were transformed with the plasmid pHO2d/HMGAlbo The expression of the fusion protein was induced with isopropylthio-R-D-galactoside (IPTG). After 4 hours the bacteria were centrifuged off for 15 minutes at 10,000 x g and the pellet was stored at -20 C until further use.
For the extraction of the fusion protein 25 ml of extraction buffer (1% n-octyl-R,D-thioglucopyranoside (OTG) in 50 mM NaXPO4 buffer, pH 800, 250 mM NaCl, 10 mM imidazole and MiniProtease inhibitor tablets (Roche, Mannheim, Germany) (5 hrs/50 ml)) were added to a frozen bacteria pellet from 500 ml of culture, followed by 5pl of benzonase (gradel; MERCK, Darmstadt, Germany), homogenised by pipetting and pipetting off, and incubated for 5 min at RT> This was followed by centrifugation for 15 mins at 10,000 x g(RT)o The supernatant was filtered through a fluted filter and then added to a HIS-SELECT column (HIS-SELECT Cartridge, Sigma, Deisenhofen, Germany) equilibrated with wash buffer (50 mM NaXPO4 buffer, pH 8, 0, 250 mM NaCl, mN! imidazole, all from MERCK, Darmstadt, Germany)o After washing the column with 10 - 15 ml of wash buffer the fusion protein was eluted with elution buffer (250 mM
ixnidazole in wash buffer) in 0,5 - 1 ml size fractions.
10 Protein-containing fractions were checked for purity by means of gel electrophoresis(16% polyacrylamide gel according to Schager & Jagow, 1987, AnaleBiochemo 1660368-379), Fractions with fusion protein were purified, if necessary dialysed using a suitable buffer, and after protein determination were tested again for purity. The purified fusion protein was stored in aliquots at -20 Ca ~~~ermination of ~~(a interaction of HMGAI&/~ ~pi ~~~~er~
and ~~A1b Xia6 A test based on the 96-well format was used for a more detailed analysis of the affinity of the HMGAla/b-spiegelmers for H1vlGAlbo In this test the binding of the HMGAla/b spiegelmers to HMGAlb-His6 prevents its interaction with a DNA oligonucleotide that has a binding site for HMGAla/bo This DNA oligonucleotide (dsDNA AT
hook) (Fashena et alo, 1992) is labelled on one strand with a biotin molecule, via which it can be bound to plates coated with streptavidin. The detection of HMGAlb-His6 bound to DNA is carried out with horseradish peroxidase modified with nickel (Nickel-HRP), which transforms a fluorogenic substrate. In this assay the spiegelmer displaces the recombinant HMGAlb from its natural binding partner. On account of the 1:1:1 stoichiometry of spiegelmer/ rHMGAlb/ dsDNA AT Hook, a direct prediction can be made regarding the affinity of the spiegelmers for HMGAlba The principle of the assay is illustrated in F'ig 5.
To carry out this test spiegelmers in various concentrations and HMGAlb-His6 (0.36~ag/ml; ca. 30 nM) in a total volume of 100 ~zl are incubated for 10 minutes in a tapered floor plate at room temperature while shaking. The incubation solution also containso 25 mM Tris/HC1, pH 7.0 (Ambion, Austin, TX, USA), 140 mM KC1 (Ambion, Austin, TX, USA), 12 mM KTaCl (Ambion, Austin, TX, USA), 0,8 mN! MgC12 (Ambion, Austin, TX, USA), 0.25 mg/ml BSA (Roche, Mannheim, Germany), 1 mM DTT (Invitrogen, Karlsruhe, Germany), 18 -}zg/ml poly(dGdC) (Sigma, Deisenhofen, Germany)), 0.05 %
Tween 20 (Roche, Mannheim, Germany). 2 ul of biotinylated DNA oligonucleotides dsDNA AT hook (equimolar mixture of 5'biotin-TCGAAAA.AAGC CTGGC (34 nt) and 20 5'GCCAGTTTTTTTTTTTTTTTTTTGCTTTTTT (31 nt); 75 }aN! in 150 mM
NaC1 (Ambion, Austin, TX, USA)) are then added and incubated for a further 10 mins at RT while shaking. The batches are then transferred to a black 96-well plate coated with streptavidin (ReactiBind from Pierce, Bonn, Germany)) and incubated for 30 mins at RT while gently shaking. Following this the wells of the plate are washed three times, each time with 200 ul of TBSTCM (20 mM
Tris/HC1, pH 7.6 (Ambion, Austin, TX, USA); 137 mM 1VaCl (Ambion, Austin, TX, USA), 1 mM MgCl2 (Ambion, Austin, TX, USA), 1 mM CaC12 (Sigma, Deisenhofen, Germany), 0.05% Tween 20 (Roche, Mannheim, Germany)). 50 pl of a dilute nickel-HRP solution are added to each well (ExpressDetector nickel-HRP, (Medac, Hamburg, Germany) 1:1000 in 10 mg/ml BSA (Roche, Mannheim, Germany)in TBSTCM) and incubated for 1 hour at RT while gently shaking. The wells are then washed again three times with 200 ~il TBSTCM each time.
100 ~al of the fluorogenic HRP substrate (QuantaBlue, Pierce, Bonn, Germany) are then added to each well and the fluorescence is measured after 15 mins (ex: 340/em:
405 nm), Result It was shown that the spiegelmers NOX-A (50nt), NOX-f (33nt) and NOX-f (48nt) compete in a concentration-dependent manner with the binding of HMGAlb-His6 to the biotinylated DNA-Oligonucleotide (Fig. 6)e A IC50 of ca.
15 nM is found for spiegelmer NOX-A.
In contrast to the active spiegelmer, a control spiegelmer with a inverse sequence to NOX-A showed in a concentration of up 0.5 pM no effect on the binding of HMGAlb-His6 to the DNA oligonucleotide, and non-specific interactions with HMGAlb-His6 occur only at concentrations above 1liM
(Figa 7).
2o 2 Us of apiaga1~ers to ~~~~~t HMGAlb by western blot Execution/Methods The recombinantly expressed HMGAlb was separated by gel electrophoresis on a 16% PAA-tricin gel and transferred by means of electroblotting to nitrocellulose membraneso The membrane was then blocked with 5% skimmed milk and 100 nM
non-specific spiegelmer in 1xTBST (20 mM Tris/HC1 pH 706, 137 mM NaCl, 0.1% Tween) for 1 hour and washed three times for 10 minutes with 1xTBSTe The detection of the recombinant HMGAlb was carried out with spiegelmer NOX-A
biotinylated at the 5' end (5'bioNOX-A) 5'bioNOX-A was diluted in 1xTBST with 1mM each of calcium and magnesium (TBST+Ca/Mg) and 100 nM non-specific spiegelmer and incubated for 1,5 hours. The blot was then washed three times for 10 minutes with lx TBST+ Ca/ Mg and the bound biotinylated spiegelmer was incubated with an anti-biotin antibody in TBST+ Ca/Mg for 45 minuteso The blot was then washed five times for 10 minutes with 1xTBST+Ca/Mg and the secondary antibody coupled with horseradish peroxidase (HRP) was detected by means of LumiGLO detection reagent (Cell Signaling Technology), Result The binding of a 5'-terminal biotinylated spiegelmer to the recombinantly expressed HMGAlb was demonstrated by means of the aforedescribed process. Similarly to a detection based on antibodies, 5ug of HMGAlb were detected with 3nM bio-NOX-A after transfer to a blot membrane. The inverse spiegelmer of NOX-A could not recognise HMGAlb, which confirms the specific binding of NOX-A (Fig. S)m Example 3g PEI-Spiagalm r Formulation 301 Principle of the p lyethyl n imin -m diated transfection of spiagelm rs The target molecule HMGAla/b is expressed in the cytosol and finds as transcription factor its natural binding partner, the double-strand DNA in the cell nucleus. The HMGAla/b-mediated cellular responses should be antagonised by binding of the spiegelmer to HMGAla/b in the cytosol, and competition of the HMGAla/b bound by the AT hooks to the DNA in cell nucleus. On account of the negative charge of the plasma membrane DNA and RNA molecule are not readily taken up by passive transport from a cell. One of the approaches to the intracellular transport by nucleic acids is the condensation or packing with charged particles or reagents, resulting in a charge of the overall complex.
This complex is easily taken up through endocytosis and thus passes into the cytosol of the cell. Disadvantages of this method are the stability of the DNA/RNA and the release of the nucleic acid from the endosomal compartment.
In the cytosol of the cell a lysosome is quickly formed from the constricted endosome by the introduction of proteases or nucleases and by protonation of the compartment, Nucleases digest the nucleic acids there and in addition the nucleic acid is not stable in the acidic medium. The whole complex is rapidly transported again out of the cell by exocytosis and decomposition in the Golgi apparatus, and therefore only a few nucleic acids pass into the cell. One of the preconditions for a suitable transfection system is thus the stabilisation as well as the release of the nucleic acid from the endosome into the cytosol. As regards stability RNA spiegelmers have ideal properties for a transfection of eukaryotic cells, since being unnatural enantiomers they are not cleaved by enzymes.
The selected transfection system is based on the formation of micelles of nucleic acids with branched polyethyleneimine (PEI)o The phospate backbone of the nucleic acids interacts with the free nitrogen positions of the PEI and forms small micelles by cross-branching, which have a positive charge on account of the PEI. In this connection PEI with a molecular weight of 3 to 800 kDa is used. The smaller the PEI, the smaller are the formed micelles. The use of 25 kDa cross-branched PEI (Sigma-Aldrich Cat. No. 40;872-7) leads on addition of nucleic acids to the formation of polyplexes of size 100 nm up to 500 nm, though typically to polyplexes of size 100 to 200 nm. As a rule a nitrogen/phosphate ratio of 2e1 to 5a1 is used, in some cases even up to 20e1e The packing of the nucleic acid in micelles results in a change of the zeta potential of the complex to -- (+) 21 mV with a N/P ratio of 3. It is known that with increasing, positive zeta potential of complexes the toxicity to culture cells rises.
These micelles are however easily taken up as endosomes by a cell by constriction of the plasma membrane. The PEI now buffers inflowing protons, as a result of which many chloride ions in the interior of the endosome lead to a swelling of the compartment on account of the osmotic pressure. This effect of PEI is described in the literature as the proton sponge effect (Sonawane et alo, JBC, 2003, Vol.278; No.45(7) pp.44826-44831) and ultimately leads to the rupture of the endosome and to the release of the spiegelmers into the cytosol.
The nucleic acid-PEI complex has a tendency on account of a strongly positive charge to interaction and aggregation with serum proteins, and also to exhibit the aforedescribed cell toxicity. Thus, it has been described in the literature that high doses of nucleic acid-PEI micelles after subcutaneous and intravenous injection in rats can rapidly lead to an accumulation in the lungs and thus to embolisms/infarcts, The solution to this problem is to derivatise the nucleic acid with 2 kDa polyethylene glycol (PEG). These residues surround the micelles like a shield and prevent the binding to serum proteins (Ogris et al., Gene Therapy, 1999, 6(595-605), Furthermore, the zeta potential is reduced to +/- 0 mV, which leads to a lower cell toxicity while retaining the buffer capacity of the PEI as regards the proton sponge effect.
3a2 Spi galmeg Activity with PEG2000 The lead candidates NOX-A and NOX-f were produced synthetically as aptamer and spiegelmer with a 3'-terminal amino group, and were then PEGylated via the amino radical.
It was shown by means of equilibrium binding assays that PEGylation has no influence on the binding properties of the aptamers to the HMGAla/b fragment. Furthermore, it was shown by means of competition assays with recombinant full-length HMGAla/b that also the binding of spiegelmers to the full-length HMGA1a/b is independent of the 3'-terminal PEGylation (Fig. 9), 3o3 Spiagalmer Packing The packing of sterile, PEGylated spiegelmer was carried out in PBS by adding 25 kDa of cross-branched polyethyleneimine (PEI) (ALDRICH, Cat.e 40,872-7) in a ratio of the absolute nitrogen fraction of the PEI to the absolute phosphate of the ribonucleic acid backbone of 2,5a1 (N/P 2.5). The sterile, autoclaved PEI solution had a concentration of 200 mM free nitrogen groups and was adjusted to a pH of 7,4 with 1 M hydrochloric acid. The sterile filtered spiegelmer was taken in a concentration of up to 700 uM in 1xPBS with Ca/Mg and after addition of sterile filtered PEI was incubated for 30-60 minutes at room temperature> Ideally the complex formation takes place with the smallest possible adjusted concentration of added spiegelmer, since high concentrations of spiegelmer lead to randomly large aggregates. The formation of spiegelmer micelles was measured by means of a dye exclusion assay. For this, it was determined how much spiegelmer can be detected by the dye before and after packing in micelles. RiboGreen (M. Probes) was used as dye, and the fluorescence was measured with an ELISA
reader. 1 uM spiegelmer was added in each case to 100 pl 1xPES and increasing amounts of PEI were added. 100 ul of 0.2 ug/ul RiboGreen were placed in a 96-well microtitre plate suitable for fluorescence, and after incubating the micelle batch for 30 minutes at room temperature 10 pl were pipetted into the microtitre plate. Starting from a N/P
ratio of 2, more than 90% of the spiegelmers were present as micelles (Fig.10)< In this connection PEI alone had no influence on the fluorescence of the dye.
3.4 ~~~~ility of Spiagc~lm r Hic lles 1~zM of spiegelmer micelles were stored under conditions specified in Fig. 11. The stability of spiegelmer micelles was measured by the dye exclusion assay described in Section 3.3 A stability study of the micelles showed that the storage of micelles in different media as well as at different temperatures has no influence on the spiegelmer micelles. The freeze drying of ribozyme/PEI complexes without any loss of the properties of the ribozyme is also described in the literature (Brus-C et al>, J. Control Release, 2004, Feb, 20, 95(1), 199-31)0 3.5 Uptake of ~~~~~~~~er Hica1l s The intracellular uptake of spiegelmer micelles was established in a cell culture system of HS578T cellso 1x104 HS578T cells were allowed to grow on sterile 20 mm size cover classes to a confluence of 30-40%. 5'-labelled spiegelmer NOX-A-3'-PEG was packed with a N/P ratio 20501 in micelles, added in a concentration of 1 u1Vt to the cells, and incubated for 16 hours at 37 Co As control for the passive uptake of spiegelmers, 1 uM of pure fluorescence-labelled spiegelmer was in each case incubated with the cells. The cells were then washed three times with 1 ml of PBS and fixed for 30 minutes with 3% paraformaldehyde. The preparations were again washed three times with 1 ml of PBS, incubated for a further 10-20 seconds with a DAPI
solution (1 pl stock to 10 ml 1xPBS) to stain the chomatin in the cell nucleus, washed once more, and covered with a mounting solution. The preparations prepared in this way were analysed in a fluorescence microscope (emission 488 nm/extinction 514-522nm).
It was shown that spiegelmer micelles have a higher transfection rate compared to "naked", unpacked spiegelmers (Fig. 12) The transfection efficiency was in this connection >95% of all cells and had no influence on the morphology of the cells. The 5'-FITC-coupled spiegelmer was mainly to be found in the cytosol and associated with the plasma membrane. The point-like distribution indicates an inclusion in compartments and the diffuse pattern points to released spiegelmer. Only a slight spiegelmer signal could be detected in the cell nucleus.
3o6 Rel ase of Sp~~~~lmer The point-like distribution of the spiegelmer in the cytosol and perinuclear space of the H578T cells points to an accummulation in compartments of the cells, for example endosomes. To check the release of the spiegelmers from these compartments the distribution pattern of individual, greatly enlarged cells was analysed (Fig. 13), In addition to the point-like localisation of the spiegelmers, a diffuse distribution pattern in the cytosol and on the plasma membrane was detected, which points to the endosomal release of the spiegelmerso This pattern was not found in the case of "naked" spiegelmers.
~~ ple 4o Bio~~tivaty is~ vivo 401 Pr liferation Assay without PEI
Effect on the proliferation of MCF-7 cells The potential role of HMGAla/b in cell division was investigated by means of proliferation assays. First of all spiegelmer was added in a high dose as "naked" nucleic acid to the cell culture medium and the growth of the cells was followed over time The breast cancer cell line MCF-7 was used as model, since in these cells a smaller (antagonising) expression of HMGAla/b was found, and the role of HMGA1a/b in the proliferation of these cells had already been described in the literature. Reeves et alo (Reeves-R et ale, Molecular and Cellular Biology, Jan 2001, p575-594) showed that the over-expression of HMGAla/b in MCF-7 cells leads to an increased proliferation, and the inhibition of HMGA1a/b by means of expressed antisense constructs inhibits the proliferation of MCF-7 cells.
Execution/Method 0e5 x 104 MCF-7 cells (ATCC) were seeded out in 96-well plates (Costar) with a flat, transparent base and cultured for 16-24 hours in 100 }zl RPMI 1640 medium with 10% foetal calf serum (FCS)o The cells were then washed with PBS and cultured for a further 48 hours with standard cell culture medium with the direct addition of sterile filtered spiegelmer. This was followed by the addition of 10 l of a resazurin solution (0.44 mM in PBS) to the respective batches and further incubation for 2 hours at 37 C. The transformation of resazurin by the cell metabolism correlates directly with the number of cells. The change in colour was measured in a Fluostar Optima multidetection plate reading device (BMG) (emission 544 nm, extinction 590 nm)o Each value was determined three times per experiment and referred to the values of untreated control cells.
Result NOX-A inhibited after two days in a dose-dependent manner the proliferation of MCF-7 cells (n=12) (Fig. 14), The maximum inhibition of the proliferation to cae 30% of the value of untreated cells was found at 40 ~aMo At concentrations up to 40 ~iM no non-specific effect of the inverse control spiegelmer was found.
4 2 Proliferation Assay with PEI
Effect of spiegelmer micelles on the proliferation of H-1299 cells Execution/Method 1x104 NCI-H-1299 cells (lung carcinoma cells; ATCC) were seeded out in in 24-well plates (Costar) with a flat, transparent base and cultured for 16-24 hours in 1 ml RPMI
1640 medium with a 10% FCSa The cells were then washed twice with PBS and cultured for a further three days with cell culture medium containing 1% FCS and spiegelmer micellles> The packing of sterile, PEGylated spieglemer was carried out beforehand in PBS by adding 25 kDa cross-branched polyethyleneimine (PEI) (Sigma) in a ratio of the absolute nitrogen fraction of the PEI to the absolute phosphate of the ribonucleic acid backbone of 20501 (N/P
205), The sterile spiegelmer was used in a concentration of 30 liP'! and after the addition of the PEI was incubated for 30-60 minutes at room temperature. The spiegelmer micelles were then diluted to 1 uM with cell culture medium containing 1% FCS, added directly to the washed cells, and incubated for three days at 37 C.
This was followed by addition of 100 ul resazurin solution to the respective batches and further incubation for 2 hours at 37 Co The transformation of resazurin by the cell motabolism correlates directly with the number of cells.
100 ul were removed from the batches, transferred to a 96-well plate, and the colour change was measured in a Fluostar Optima multidetection plate reading device (BMG) (emission 544 nm, extinction 590 nm)e Each value was determined twice per experiment and referred to the values of untreated control cells.
Result The use of PEI (N/P 2.5) with 1~aNt spiegelmer did not initially have any effect on cell proliferation. By reducing the amount of FKS in the cell culture medium to below 1% it was shown that the transfection with spiegelmer micelles has an influence on the proliferation of H-1299 cells, which was not previously visible with 10% FKS (Fig 15)o Possibly FKS stimulates the proliferation to such an extent that the slight effect could not be observed. The reduction of the FKS concentration in MCF-7 cells lead to the death of the cells over a period of 3 days.
4o ~ Inhibition Tumour Marker cdc25& (with PEI) Effect on the HMGAla/b-mediated regulation of cell cycle factors, in the example of the potential oncogene cdc25a.
Reeves et al, (Molecular and Cellular Biology, Jan 2001, p575-594) showed by means of cDNA arrays through over-expression of HMGAla/b in MCF-7 cells that HMGAla/b induces the expression of a large number of genes. At the same time cell cycle factors and growth factors such as for example cdc25a, identified as a potential oncogene (cell division cycle 25a phosphotase), which plays a decisive role in the control of the transition from the G1 phase to the S phase of the cell cycle, are over-expressed by a factor of up to 100. The activation of such control points leads after inhibition of the cell cycle progression either to the transcription of genes which are involved in DNA
repair or, if the DNA damage is irreparable, to the induction of apoptosis. As cell culture test system H-1299 cells were chosen for this purpose, since they have already exhibited an increased expression of HMGAla/be Execution/Method 1x104 H-1299 cells were seeded out in 24-well plates (Costar) with a flat, transparent floor and cultured for 16-24 hours in RPMI 1640 medium containing 10% FCS (volume 1 ml). The cells were then washed twice with PBS and cultured for a further three days in cell culture medium with spiegelmer micelles containing 10% FCSa The packing of sterile, PEGylated spiegelmer was carried out beforehand in PBS by adding 25 kDa cross-branched polyethyleneimine (PEI) (Sigma) in a ratio of the absolute nitrogen fraction of the PEI to the absolute phosphate of the ribonucleic acid backbone of 2,5e1 (N/P 2,5). The sterile spiegelmer was used in a concentration of 30 ~xM and, after adding PEI, was incubated for 30-60 minutes at room temperature. The spiegelmer micelles with cell culture medium containing 1%
FCS were then diluted to the respective concentration, added directly to the washed cells, and incubated for three days at 37 C. The cells were washed twice with PBS and harvested by means of a cell scraper. The mRNA of the cells was then isolated from the cells by means of Roti-Quick-Kits (Roth, CateNo,979,1) and 0.2-1 ug of total RNA
was used as template for the PCR of cdc25a and GAPDIHe The primers for the amplification of GAPDH were as follows:
forward primer: 5'-ACATGTTCCAATATGATTCC-3' and reverse primer: 5-TGGACTCCACGACGTACTCAG-3' at an annealing temperature of 51 C, and for the amplification of cdc25ao forward primer: 5'-GAGGAGTCTCACCTGGAAGTACA-3' and reverse primer 5'-GCCATTCAAAACCAGATGCCATAA-3' at an annealing temperature of 59 C, The PCR conditions were as follows:
002-0.75 ~aN! primer, 1,5 mM MgCl2 and 0.2 mM dNTPso Every two PCR cycles an aliquot of 5 ul was quantified by PicoGreen and evaluated by correlation with GAPDH as load control: for this, in the first step for each investigated sample the so-called "crossing point" value (CP) of the reference gene is subtracted from the CP value of the gene being investigated (dCP=CP target gene minus CP reference gene). CP is defined as the number of PCR cycles that are required in order to reach a constantly defined fluorescence value. The same amount of newly synthesised DNA is found at the CP in all reaction vessels. After this standardisation the dCP value of a control (in this case GAPDH) is subtracted from the dCP value of the experimently treated samples; one arrives at the so-called "delta-delta CT" calculation model. The relative expression difference of a sample between the treatment and the control (ratio), normalised to the reference gene and referred to a standard sample, is found from the arithmetic formula 2 ddcP
dCP=CP (cdc25a)- CP (GAPDH) ddCP= dCP (treatment spiegelmer NOX-A)- dCP(control: PBS or NOX-A inverse) Rat1o=2-ddCP
Result cdc25a and HMGAla/b were detected in MCF-7 and H 1299 cells by means of RT-PCR. MCF-7 cells showed with a low expression of HMGAla/b also a low expression of cdc25a, whereas HMGAla/b and cdc25a were strongly expressed in H-1299 cells. The transfection of H-1299 cells for two days with HMGAla/b-binding spiegelmers led to a significant, dose-dependent reduction of the expression of cdc25a mRNA
(Fig, 16 and Figo17)o Up to a concentration of 4liM a control speigelmer exhibited no non-specific effect, neither on the GAPDH nor on the cdc25a mRNA expression. From this it can be concluded that the HMGAla/b-induced over-expression of the potential oncogene cdc25a can be inhibited by means of spiegelmers, ~xaLmple 5. Effectav ness Studyo Xamograft Model Effect of spiegelmers on tumour growth in vivo In order to test the hypothesis that HMGAla/b-binding spiegelmers inhibit the growth of tumours in vivo, a xenograft model was developed for the strongly HMGAIa/b-expressing pancreatic carcinoma cells PSN-1. On the basis of this model a therapeutic experiment was carried out with 2 mg/kg NOX-A spiegelmer micelles at a N/P of 2e5 (see Example 3, paragraph 3,3).
Execution/Method Male naked mice (NMRI: nu/nu) (group size n = 8) were subcutaneously injected in the side with in each case 10' PSN-1 cells (ECACC) and the tumour growth was observed over 22 days. The animals had a mean weight of 25-27 g and were 6-8 weeks old. The active spiegelmer NOX-A-3'PEG and the inverse control spiegelmer in I1W-3'PEG were packed in micelles as described above by adding PEI in a N/P ratio of 2>5. 100 u1 of the spiegelmer micelle suspension (corresponding to 3.46 nmole/animal or 2 mg/kg) were in each case subcutaneously injected daily into the vicinity of the tumour. The tumour volume and bodyweight were measured three times a week. The animals were sacrificed on day 22 and the distribution of NOX-A in the plasma, liver, kidneys and tumour was quantified.
For this purpose the tissues were homogenised in hybridisation buffer (0.5x SSC pH 7.0; 0>5% (w/v) SDSarcosinate) and centrifuged for 10 mins at 4000x g. The supernatants obtained were stored at -20 C until further use.
The amount of spiegelmer in the plasma samples and in the tissue homogenates was investigated by means of a hybridisation assay (Drolet et al> (2000) Pharm.Res, 1701503), The hybridisation assay is based on the following principle o the spiegelmer to be detected (L-RNA
molecule) is hybridised on an immobilised L-DNA
oligonucleotide probe ( = capture probe NOX-A; in this caseo 5'- CCCATATCCACCCACGTATCAGCCTTTTTTTT-NH2 -3';
complementary to the 5' end of HMGAla/b-NOX-A) and detected with a biotinylated detection L-DNA probe (= detector probe NOX-A; in this caseo 5'-biotin-TTTTTTTTGGCTGAAACCACCCACATGG-3'; complementary to the 3' end of HMGAla/b-NOX-A)e For this purpose a streptavidin alkaline phosphatase conjugate is in a further step bound to the complex. After adding a chemiluminescence substrate light is generated and measured in a luminometero Immobilisation of the oligonucleotide probe: 100 pl of the capture probe (0a75 pmole/ml in coupling buffero 500 mM
Na2HP04, pH 8 0 5, 0.5 mM EDTA) were transferred to each well (depression in a plate) in DNA-BIND plates (Corning Costar) and incubated overnight at 4 C. The probe was then washed three times with 200 ~al of coupling buffer each time and incubated for 1 hourat 37 C with in each case 200 ul of blocking buffer (0050 (w/v) BSA in coupling buffer)e After washing again with 200 ul of coupling buffer and 3x 200 ul hybridisation buffer the plates can be used for the detection.
Hybridisation and detection: 10 ~il EDTA plasma or tissue homogenate were mixed with 90 ul of detection buffer (2 pmole/lil of detector probe in hybridisation buffer) and centrifuged. Further purifications were carried out as necessary. The batches were then denatured for 10 mins at 95 C, transferred to the suitably prepared DNA-BIND wells (see above) and incubated for 45 mins at ca. 40 Co The following wash steps were then carried out: 2x 200 u1 hybridisation buffer and 3x 200 ~i1 lx TBS/Tween 20 (20 mM
Tris-Cl pH 706, 137 mM NaCl, 0.1% (v/v) Tween 20), 1 u1 streptavidin alkaline phosphatase conjugate (Promega) was diluted with 5 ml of TBS/Tween 20. 100 ul of the diluted conjugate were added to each well and incubated for 1 hourat room temperature. The following wash steps were then carried outo 2x 200 lil TBS/Tween 20 and 2x 200 ~il of assay buffer (20 mM Tris-Cl pH 9.8, 1 mM MgC12), 100 p1 of CSPD Ready-To-Use Substrate" (Applied Biosystems) were then added, incubated for 30 mins at room temperature, and the chemiluminescence was measured in a Fluostar Optima multidetecton plate reading device (BMG), Result In a preliminary experiment it was shown that H-1299 cells after transplanting as a tumour grew significantly more slowly than PSN-1, and on comparing the individual animals exhibited an inhomogeneous tumour growth and therefore appeared unsuitable as xenograft model for a treatment study. PSN-1 cells exhibited an aggressive tumour growth within 22 days. It was shown that NOX-A nicelles at a dose of 2 mg/kg reduced the growth of PSN-1 tumours significantly compared to the PBS control (Figo 18). The weight of the animals was unaffected by the treatment with spiegelmer micelles. The control spiegelmer did not exhibit any non-specific inhibition of the tumour growth and likewise had no effect on the weight of the animals.
The differences in tumour sizes were, from day 10 of the treatment with NOX-A3'PEG micelles, significant or highly significant compared to untreated animals (PBS control (student's t-test)o The end point analysis after 22 days showed a highly significant, specific reduction in tumour growth (p=0.0095 compared to PBS and p=0.022 compared to inverse control spiegelmer) (Fig. 19) Mice treated with PBS showed an average tumour growth of 2,5 cm3, animals treated with controlled spiegelmer had an average tumour volume of 206 cm3 and animals treated with NOX-A had an average tumour volume of 1,2 cm3 after 22 days (box-and-whisker analysis)e This corresponds to a reduction of the tumour growth of more than 50%.
The analysis of the tissue distribution of NOX-A showed a high concentration in the tumour (Figa 20), Ex le 6o Comparis n of the in vivo Tissue Distribut n of Pack cl and Unpacked Spiagalmer In order to check the efficient incorporation of spiegelmer micelles, a non-functional spiegelmer (Proof Of Concept =
POC) was PEGylated at the 3' end with PEG 2 kDa and packed with a nitrogen/phosphate ratio (N/P) of 205 in micelles (see Example 3, paragraph 3,3)> In a similar way to the protocol described in Example 5, this approach was adopted for spiegelmer packed in micelles as well as for free, unpacked spiegelmer, Ex cuta n/meth d Male naked mice (NMRI; nu/nu) (group size n = 8) were in each case injected subcutaneously in the side with 10' PSN-1 cells (ECACC) and the tumour growth was observed over 25 days. The animals had a mean weight of 25-27 g and were 6-8 weeks old. The non-functional spiegelmer POC-3'PEG was packed in micelles by adding PEI in a N/P ratio of 2e5, as described above. Spiegelmer POC-3'PEG not packed in micelles served as control for the incorporation not mediated by PEI. 100 ~1l of the spiegelmer-micelle suspension or spiegelmer solution (corresponding to 1500 nmole/kg and 2000 nmole/kg) were injected daily subcutaneously into the vicinity of the tumour. The tumour volume and body weight were measured three times a week.
24 and 96 hours after the last injection two animals from each group were sacrificed and the distribution of POC-3'PEG (packed/unpacked) in the plasma, brain, heart, lungs, liver, kidneys, gallbladder, pancreas and tumour was quantified, For this purpose the tissue was homogenised in hybridisation buffer (0,5x SSC pH 700; 0,5% (w/v) SDSarcosinate) and centrifuged for 10 mins at 4000 x g.
The resultant supernatants were stored at -20 C until further use.
The amount of spiegelmer in the plasma samples and in the tissues homogenates was investigated by means of a hybridisation assay (Drolet et alo (2000) Pharm,Reso 17:1503). The assay is based on the following principlee the spiegelmer (L-RNA molecule) to be detected is hybridised on an immobilised L-DNA oligonucleotide probe (=
capture probe POC; hereo 5'- NH2(C7)-TTTTTTTTTAGCTCTGCACAGCGCT-3'; complementary to the 3' end of POC) and is detected with a biotinylated detection L-DNA probe (= detector probe POC; hereo 5'-CCGCATCAGACCGAGTTTCCTTATTTTTTTT-Eiotin-3'; compelementary to the 5' end of POC) . For this, a streptavidin alkaline phosphatase conjugate was bound in a further step to the complex. After addition of a chemiluminescence substrate, light is generated and measured in a luminometero Immobilisation of the oligonucleotide probe: 100 pl of the POC capture probe (0075 pmole/ml in coupling buffero 500 mM NaZHPO4 pH 8,5, 005 mM EDTA) were transferred to each well (depression in a plate) in DNA-BIND plates (Corning Costar) and incubated overnight at 4 Ce The probe was then washed three times with 200 ul of coupling buffer and incubated for 1 hourat 37 C with 200 ul of blocking buffer (005% (w/v) BSA in coupling buffer), After washing again with 200 pl of coupling buffer and 3x 200 pl of hybridisation buffer, the plates can be used for the detection.
Hybridisation and detection: 10 ul of EDTA plasma or tissue homogenate were mixed with 90 ul of detection buffer (2 pmole/ul POC detector probe in hybridisation buffer) and centrifuged. Further purifications were carried out as necessary. The batches were then denatured for 10 mins at 95 C, transferred to the suitably prepared DNA-BIND wells (see above), and incubated for 45 mins at ca. 40 Co The following wash steps were then carried out: 2x 200 pl of hybridisation buffer and 3x 200 ul 1x TBS/Tween 20 (20 mM
Tris-Cl pH 7.6, 137 mM NaCl, 0.1% (v/v) Tween 20)m 1 ul of streptavidin alkaline phosphatase conjugate (Promega) was diluted with 5 ml of lx TBS/Tween 20. 100 ul of the dilute conjugate were added to each well and incubated for one hour at room temperature. The following wash steps were then carried out: 2x 200 pl of lx TBS/Tween 20 and 2x 200 pl of lx assay buffer (20 mM Tris-Cl pH 9.8, 1 mM
MgCl2), 100 jil of CSPD "Ready-To-Use Substrate" (Applied Biosystems) were then added, incubated for 30 mins at room temperature, and the chemiluminescence was measured in a Fluostar Optima multidetection plate reading device (EMG)o Result The analysis of the weight distribution of the non-functional spiegelmer POC-3'PEG, which was packed in micelles, showed after 24 hours a significantly higher concentration in the tumour tissues (240925 +/-13,301 pmole/mg) compared to the unpacked spiegelmer (0,840 +/- 0a255 pmole/mg) (Fig. 21 A)o Whereas the concentration of the packed spiegelmer had halved (110325 +/- 70050 pmole/mg) after a further three days (96 hours), only a very small amount of the unpacked spiegelmer could be detected (00120 +/- 00057 pmole/mg), The plasma level of unpacked spiegelmer (20950 +/-00438 pmole/ml) after 24 hours was comparable to that of the PEI-packed spiegelmer (10930 +/- 2,729 pmole/ml)o After 96 hours clear differences were found, in which about four times the amount of packed spiegelmer compared to the unpacked spiegelmer was detected.
A slight accummulation in the kidneys was observed after 24 hours for both formulations, whereas a slight accummulation in the liver and gallbladder was found only for unpacked spiegelmer. After 96 hours, for both formulations only minor amounts of spiegelmer were detected in the liver and kidneys. On the other hand, slightly raised values were found in the gallbladder and pancreas (but with a high standard deviation) for packed spiegelmer compared to unpacked spiegelmer.
To summarise, compared to the weight distribution (24 and 96 hours after the last injection) of spiegelmers in the presence and absence of PEI, it was found that spiegelmer micelles have a significantly prolonged residence time in the plasma and tumour compared to unpacked material (Fig.
21B) and thus represent a promising approach to the use of spiegelmers directed against intracellular target molecules.
The following citations are incorporated herein by way of reference.
Abe et alo J Gastroenterol. 2003 ; 38, 1144-9 Abe N et al (1999). Cancer Res 59:1169-1174 Abe N et al (2000). Cancer Res 60:3117-3122 Abe N et al (2002). Pancreas 25:198-204 Anand A & Chada K(2000). Nat Genet 24 :377-380 Balcercak et al, Postepy Biochem, 2005; 51(3)0261-9 Balcerczak et al Pathol Res Pract 2003; 199, 641-6 Baldassarre G et al (2003)< Mol Cell Biol 23e2225-2238 Bandiera S et al (1998)o Cancer Res 58:426-431 Battista S et al (1998) Oncogene 17:377-385 Belge G et al (1992). Cell Biol Int Rep 16 :339-347 Berlingieri MT et al. (1995). Mol Cell Biol 15:1545-1553 Birdsal SH et al (1992), Cancer Gen Cytogen 60:74-77 Bridge JA et al (1992). Cancer Detect Prevent 16:215-219 Briese et al. Int. J Gynevol Pathol 2006 Jan, 65-9 Bullerdiek J et al (1987). Cytogenet Cell Genet 45 :187-190 Bussemakers MJG et al (1991), Cancer Res 51 :606-611 Chada K et al (2004). US Patent 6,756,355 Chang et al. Dig Dis Sci, 2005 Oct, 1764-70 Chau KY et al (2000), J Neurosci 20 :7317-7324 Chau KY et al (2003)o Mol Med 9 :154-165 Chen et al. Cancer Epidemiol Biomarkers Prev 2004 Jan, 30-3 Chiappetta et al. Clin Cancer Res. 2004 Nov, 7634-44 Chiappetta G et al (1995). Oncogene 10:1307-1314 Chiappetta G et al (1996). Oncogene 13:2439-2446 Chiappetta G et al (1998)a Cancer Res 58:4193-4198 Chiappetta G et al (2001)e Int J Cancer 91:147-151 Chin MT et al (1999)o J Mol Cell Cardiol 31 :2199-2205 Chuma et al, Keio J Med 2004 Jun, 90-7 Cuff CA et al (2001)a J Clin Invest 108 :1031-1040 Czyz et alo Langenbecks Arch Surg 2004, Jun, 193-7 Dal Cin P et al (1993). Genes Chromosomes Cancer 8:131-133 Dal Cin P et al (1995)o Cancer Res 55:1565-1568 Diana F et al (2001)o J Biol Chem 276 :11354-11361 Dolde CE et al (2002)o Breast Cancer Res Treat 71 :181-191 Donato et al. Oncol Rep 2004 Jun, 1209-13 Du W et al (1993)o Cell 74 :887-898 Evans A et al (2004). J Surg Oncol 88 :86-99 Fedele M et al (1996)o Cancer Res 56:1896-1901 Fletcher AJ et al (1991)o Am J Pathol 138:1199-1207 Fletcher AJ et al (1992)e Cancer Res 52 :6224-6228 Fletcher AJ et al (1995)o Genes Chromosomes Cancer 12:220-Flohr et al. Histol Histopathol 2003 Oct, 999-1004 Foster LC et al (1998)o J Biol Chem 273 :20341-20346 Foster LC et al (2000)e FASEB J 14 :368-378 French et al. Mol Cell Biol 1996, 5393-9 Friedman M et al (1993)o Nucleic Acids Res 21:4259-4267 Giancotti V et al (1987), EMBO J 6:1981-1987 Giancotti V et al (1989)o Exp Cell Res 184:538-545 Giancotti V et al. (1993). Eur J Biochem 213:825-832 Giannini G et al (1999). Cancer Res 59:2484-2492 Giannini G et al (2000)o Br J Cancer 83:1503-1509 Grosschedl R et al (1994), Trends Genet 10 :94-100 Heim S et al (1988). Cancer Genet Cytogenet 32:13-17 Henderson et al J Virol 2000, 10523-34 Hindmarsh et al. J. Virol 1999, 2994-3003 Holth LT et al (1997). DNA Cell Biol 16:1299-1309 Huth JR et al (1997). Nat Struct Biol 4:657-665 Jain M et al (1996)o J Clin Invest 97 :596-603 Johansson N et al (1992), Cancer Genet Cytogenet 60 :219-Johansson M et al (1993)e Br J Cancer 67 :1236-1241 Johnson KR et al (1990). Exp Cell Res 187:69-76 Kazmierczak B et al (1995), Cancer Res 55 :2497-2499 Kettunen et al. Cancer Genet Cytogenet 2004 Mar, 98-106 Kim DH et al (1999), Int J Cancer 84 :376-380 Klotzbucher M et al (1999), Am J Pathol 155:1535-1542 Kottickal LV et al (1998), Biochem Biophys Res Commun 242 :452-456 Lee et al. Int J ncol 2004, Apr, 847-51 Leger et al. Mol Cell Biol 1995, 3738-47 Leman ES et al (2003)m J Cell Biochem 88 :599-608 Li et al J. Virol 1998, 2125-31 Li et al, Am J Dermatopathol 2004 Aug, 267-72 Mandahl N et al (1987)o Int J Cancer 39 :685-688 Mandahl N et al (1989). Cancer 65 :242-248 Mandahl N et al (1993). Cancer 71 : 3009-3013 Mark J & Dahlenfors R(1986)a Anticancer Res 6:299-308 Mark J et al (1980)o Cancer Genet Cytogenet 2 :231-241 Mark J et al (1988). Anticancer Res 8:621-626 Masciullo et al Carcinogenesis 2003 Jul, 1191-8 Masciullo V et al (2003). Carcinogenesis 24:1191-1198 Melillo RM et al (2001)o Mol Cell Biol 21:2485-2495 Nam et al Histopathology 2003 May, 466-71 Nestl A et al (2001). Cancer Res 61:1569-1577 Noguera R et al (1989). Virchows Arch A Pathol Anat Histopathol 415:377-382 Ogram SA et al (1997). J Biol Chem 270:14235-14242 Ozisik YY et al (1993). Cancer Genet Cytogenet 79 :136-138 Panagiotidis et al Virology 1999, 64-74 Pellacani A et al (1999)e J Biol Chem 274:1525-1532 Peters et al. Cancer Epidemiol Biomarkers Prev 2005, Jul 17, 17-23 Pierantoni et al. Biochem J 2003 May, 145-50 Ram TG et al (1993). Cancer Res 53 :2655-2660 Reeves R & Beckerbauer K (2002). Progr Cell Cycle Res Reeves R & Beckerbauer L(2001). Biochim Biophys Acta 1519:13-29 Reeves R & Nissen MS (1990). J Biol Chem 265:8573-8582 Reeves R et al (2001)o Mol Cell Biol 21:575-594 Rogalla P et al (1996), Am J Pathol 149:775-779 Rohen C et al (1995). Cancer Genet Cytogenet 84e82-84 Sarhadi et al. J Pathol Mar 6 2006, Epup ahead of print Sato et al. Pathol Res Pract, 2005; 201, 333-9 Scala S et al (2000). Proc Natl Acad Sci USA 97 :4256-4261 Schaefer et al. Mol Cell Biol. 1997, 873-86 Schlueter et al. Pathol Res Pract, 2005; 201, 101-7 Schoenmakers EFPM et al. (1995), Nat Genet 10:436-444 Sgarra R et al (2003). Biochemistry 42 :3575-3585 Sgarra R et al (2004). FEBS Lett 574 :1-8 Sreekantaiah C et al (1990). Cancer Genet Cytogenet 45 :81-Sreekantaiah C et al (1991). Cancer Res 5 :422-433 Staats B et al (1996)a Breast Cancer Res Treat 38 :299-303 Tamimi Y et al (1996). Br J Cancer 74 :573-578 Tapasso F et al (2004). Cancer Gene Ther 11 :633-641 Tarbe N et al (2001). Anticancer Res 21:3221-3228 Thanos D & Maniatis T(1992). Cell 71:777-789 Turc-Carel C et al (1986). Cancer Genet Cytogenet 23 :283-Vallone D et al (1997). EMBO J 16:5310-5321 Van Maele et al. , Trends Biochem Sci 2006, 98-105 Vanni R et al (1988). Cancer Genet Cytogenet 32:33-34 Vanni R et al (1993). Cancer Genet Cytogenet 68032-33 Walter TA et al (1989). Cancer Genet Cytogenet 41 :99-103 Wolffe AP (1994). Science 264:1100-1101 Wood LJ et al (2000a). Cancer Res 60:4256-4261 Wood LJ et al (2000b). Mol Cell Biol 20 :5490-5502 Xiang YY et al (1997). Int J Cancer 74 :1-6 Zhou X et al (1995). Nature 376 :771-774 The features of the invention disclosed in the preceding description, claims and drawings can be essential both individually as well as in any combination for the implementation of the invention in its various embodiments.
DEMANDES OU BREVETS VOLUMINEUX
LA PRESENTE PARTIE DE CETTE DEMANDE OU CE BREVETS
COMPREND PLUS D'UN TOME.
NOTE: Pour les tomes additionels, veillez contacter le Bureau Canadien des Brevets.
JUMBO APPLICATIONS / PATENTS
THIS SECTION OF THE APPLICATION / PATENT CONTAINS MORE
THAN ONE VOLUME.
NOTE: For additional volumes please contact the Canadian Patent Office.
In a ninth embodiment of the third aspect, which is also an embodiment of the first, second, third, fourth, fifth, sixth, seventh and eighth embodiment, the intracellular target molecule is present intracellularlyo According to a fourth aspect of the invention the object is achieved by the use of a L-nucleic acid for the manufacture of a diagnostic agent for diagnostic purposes, the target molecule of the diagnostic agent being an intracellular target molecule.
In a first embodiment of the fourth aspect the intracellular receptor is selected from the group comprising molecular receptors, enzymes, chaperone molecules, signal peptides, intracellular structures and metabolic intermediates.
In a second embodiment of the fourth aspect, which is also an embodiment of the first embodiment, the intracellular receptor is selected from the group comprising polypeptides, carbohydrates, nucleic acids, lipids and combinations thereof.
In a third embodiment of the fourth aspect, which is also an embodiment of the first and second embodiment, the target molecule is selected from the group comprising transcription factors and DNA-binding proteins binding an AT hook.
5 In a fourth embodiment of the fourth aspect, which is also an embodiment of the third embodiment, the target molecule is selected from the group comprising HMG proteins, and is preferably selected from the group comprising HMGA, HMGAla, HMGAlb and HMGA2>
In a fifth embodiment of the fourth aspect, which is also an embodiment of the third and fourth embodiment, the disease is selected from the group comprising tumour diseases, virus infections and arteriosclerosis.
In a sixth embodiment of the fourth aspect, which is also an embodiment of the fifth embodiment, the tumour disease is selected from the group comprising mesenchymal tumours, epithelial tumours, benign tumours, malignant tumours and metastasising tumourso In a seventh embodiment of the fourth aspect, which is also an embodiment of the third, fourth, fifth and sixth embodiment, the target molecule is HMGA and the disease is selected from the group comprising carcinomas of the prostate, pancreas, thyroid, cervix, stomach, breast, colon/rectum, ovaries; neuroblastomas; lymphomas, uterine leiomyomas; lipomas; endometrial polyps; chondroid hamartomas of the lungs; pleomorphic adenomas of the salivary glands; haemangiopericytomas; chondromatous tumours; aggressive angiomyxomas; diffuse astrocytomas;
osteoclastomas; skin cancer; Burkitt's lymphoma; Lewis lung cancer; leukaemia; non-small-cell lung cancer; as well as in each case metastases and/or metastasising forms thereof.
In an eighth embodiment of the fourth aspect, which is also an embodiment of the fifth embodiment, the arteriosclerosis is triggered by formation of arteriosclerotic plaques mediated by HMGA1, HMGAla, HMGlb and/or HMGA2e In a ninth embodiment of the fourth aspect, which is also an embodiment of the first, second, third, fourth, fifth, sixth and seventh emodiment, the intracellular target molecule is present intracellularly, According to a fifth aspect of the invention the object is achieved by a composition comprising a L-nucleic acid binding to an intracellular target molecule, and a delivery vehicle.
In a first embodiment of the fifth aspect the delivery vehicle is a delivery vehicle suitable for the intracellular delivery of the L-nucleic acid.
In a second embodiment of the fifth aspect, which is also an embodiment of the first embodiment, the delivery vehicle is selected from the group comprising vehicles, conjugates and physical means.
In a third embodiment of the fifth aspect, which is also an embodiment of the second embodiment, the delivery vehicle is a vehicle selected from the group comprising liposomes, nanoparticles, microparticles, cyclodextrins or dendrimers, or a vesicle consisting of polypeptides, polyethyleneimine and/or amphipathic molecules.
In a fourth embodiment of the fifth aspect, which is also an embodiment of the second embodiment, the delivery vehicle is a conjugate, wherein the conjugate is a conjugate for the receptor-mediated endocytosis, a conjugate with a fusogenic peptide, a conjugate with a signal peptide, a conjugate with a nucleic acid, preferably a conjugate with a spiegelmer, or a lipophilic conjugatea In a fifth embodiment of the fifth aspect, which is also an embodiment of the second embodiment, the delivery vehicle is a physical means, the physical means preferably being selected from the group comprising electroporation, iontophoresis, pressure, ultrasound and shock waves.
In a sixth embodiment of the fifth aspect, which is also an embodiment of the third embodiment, the delivery vehicle comprises polyethyleneimine.
In a seventh embodiment of the fifth aspect, which is also an embodiment of the sixth embodiment, the polyethyleneimine is a branched polyethyleneimine with a molecular weight of about 25 kDa, In an eighth embodiment of the fifth aspect, which is also an embodiment of the sixth and seventh embodiment, the polyethyleneimine forms a micelle or a micelle-like structurea In a ninth embodiment of the fifth aspect, which is also an embodiment of the first, second, third, fourth, fifth, sixth, seventh and eighth embodiment, the L-nucleic acid is a spiegelmer.
In a tenth embodiment of the fifth aspect, which is also an embodiment of the ninth embodiment, the spiegelmer carries a modification, the said modification being selected from the group comprising PEG residues.
In an eleventh embodiment of the fifth aspect, which is also an embodiment of the tenth embodiment, the PEG residue has a molecular weight of about 1,000 to 10,000 Da, preferably a molecular weight of about 1,500 to 2,500 Da and most preferably a molecular weight of about 2,000 Da, In a twelfth embodiment of the fifth aspect, which is also an embodiment of the tenth and eleventh embodiment, the modification is bound to the 5' terminus or to the 3' terminus of the L-nucleic acid.
In a thirteenth embodiment of the fifth aspect, which is also an embodiment of the ninth, tenth, eleventh and twelfth embodiment, in the composition the ratio of the total number of nitrogen groups of the polyethyleneimine to the total number of phosphate groups of the nucleic acid contained in the composition is about 1 to 20, preferably about 1,5 to 10, more preferably about 2 to 5 and most preferably about 2 to 3.
In a fourteenth embodiment of the fifth aspect, which is also an embodiment of the first, second, third, fourth, fifth, sixth, seventh, eighth, ninth, tenth, eleventh, twelfth and thirteenth embodiment, the composition provides the L-nucleic acid intracellularly.
According to a sixth aspect of the invention the object is achieved by the pharmaceutical composition comprising a composition according to the fifth aspect, and a pharmaceutically acceptable carrier.
In an embodiment of the use according to the first aspect the L-nucleic acid is a composition according to the fifth aspect.
In an embodiment of the method according to the second aspect the L-nucleic acid is a composition according to the fifth aspect.
In an embodiment of the use according to the third aspect the L-nucleic acid is a composition according to the fifth aspect.
In an embodiment of the use according to the fourth aspect the L-nucleic acid is a composition according to the fifth aspect.
According to a seventh aspect of the invention the object is achieved by an HMGA-binding nucleic acid, characterised in that the nucleic acid comprises a section Box Al and a section Box A2, wherein the section Box Al and the section Box A2 are joined to one another by an intermediate section and wherein Box Al and Box A2 are selected individually and independently of one another from the group comprising 5 GGGCG, GGGUG and GGGAG.
In a first embodiment of the seventh aspect the intermediate section consists either of an intermediate section Zl comprising six or seven nucleotides, or of an 10 intermediate section Z2 comprising 12 to 25 nucleotideso In a second embodiment of the seventh aspect, which is also an embodiment of the first embodiment, the nucleic acid at the 5' end of the section Box Al has a first section and at 15 the 3' end of the section Box A2 has a second section, wherein preferably both sections independently of one another comprise four to eight nucleotides.
In a third embodiment of the seventh aspect, which is also an embodiment of the second embodiment, the two sections are at least partly or completely hybridised with one another, the hybridisation extending over four to eight nucleotide pairs.
In a fourth embodiment of the seventh aspect, which is also an embodiment of the second and third embodiments, the nucleic acid has at the 5' end of the section Box Al a section Helix Al and at the 3' end of the section Box A2 a section Helix A2, wherein preferably the section Helix Al comprises four to eight nucleotides and preferably the section Helix A2 comprises four to eight nucleotides, and wherein preferably the section Helix Al forms the first section at the 5' end of the section Box Al or a part thereof, and wherein preferably the section Helix A2 forms the second section at the 3' end of the section Box A2 or a part thereof, the length of the section Helix Al being independent of the length of the section Helix A2o In a fifth embodiment of the seventh aspect, which is also an embodiment of the fourth embodiment, the sections Helix Al and Helix A2 are at least partly or completely hybridised with one another, the hybridisation extending over four to eight nucleotide pairs.
In a sixth embodiment of the seventh aspect, which is also an embodiment of the fourth and fifth embodiment, between the 3' end of the section Helix Al and the 5' end of the section Box Al a section Helix Bl is arranged, and between the 3' end of the section Box A2 and the 5' end of the section Helix A2 a section Helix B2 is arranged, wherein preferably the length of the section Helix B1 and Helix B2 comprises in each case individually and independently a length of four to eight nucleotides.
In a seventh embodiment of the seventh aspect, which is also an embodiment of the sixth embodiment, the sections Helix Bl and Helix B2 are at least partly or completely hybridised with one another, the hybridisation extending over four to eight nucleotide pairs.
In an eighth embodiment of the seventh aspect, which is also an embodiment of the sixth and seventh embodiment, zero to five nucleotides are arranged between the 3' end of the section Helix Al and the 5' end of the section Helix B1e In a ninth embodiment of the seventh aspect, which is also an embodiment of the eighth embodiment, two nucleotides are arranged between the 3' end of the section Helix Al and the 5' end of the section Helix B1, In a tenth embodiment of the seventh aspect, which is also an embodiment of the sixth, seventh, eighth and ninth embodiment, zero to six nucleotides are arranged between the 3' end of the section Helix B2 and the 5' end of the section Helix A2.
In an eleventh embodiment of the seventh aspect, which is also an embodiment of the tenth embodiment, preferably insofar as this is an embodiment of the ninth embodiment, a nucleotide is arranged between the 3' end of the section Helix B2 and the 5' end of the section Helix A2.
In a twelfth embodiment of the seventh aspect, which is also an embodiment of the sixth, seventh, eighth, ninth, tenth and eleventh embodiment, the sum of the nucleotides of section Helix Al and of section Helix B1 is ten to twelve nucleotides, and the sum of the nucleotides of section Helix A2 and of section Helix B2 is ten to twelve nucleotides.
In a thirteenth embodiment of the seventh aspect, which is also an embodiment of the twelfth embodiment, the sum of the hybridised nucleotides from the hybridisation of section Helix Al with section Helix A2 and of section Helix B1 with section Helix B2 is ten to twelve nucleotide pairs.
In a fourteenth embodiment of the seventh aspect, which is also an embodiment of the sixth, seventh, eighth, ninth, tenth, eleventh, twelfth and thirteenth embodiment, preferably of the sixth or seventh embodiment, the nucleic acid does not comprise a section Helix Al and Helix A2, whereby the section Helix Bl is arranged at the 5' end of the nucleic acid and the Helix B2 is arranged at the 3' end, wherein preferably the length of the section Helix B1 and Helix B2 comprises in each case individually and independently a length of four to eight nucleotides.
In a fifteenth embodiment of the seventh aspect, which is also an embodiment of the fourteenth embodiment, the sections Helix Bl and Helix B2 are at least partly or completely hybridised with one another, the hybridisation extending over four to eight nucleotide pairs.
In a sixteenth embodiment of the seventh aspect, which is an embodiment of the fourth and fifth embodiment, one to five nucleotides are arranged between the 3' end of the section Helix Al and the 5' end of the section Box Al, and one to three nucleotides are arranged between the 3' end of the section Box A2 and the 5' end of the section Helix A2o In a seventeenth embodiment of the seventh aspect, which is also an embodiment of the sixth, seventh, eighth, ninth, tenth, eleventh, twelfth, thirteenth, fourteenth and fifteenth embodiment, two nucleotides are arranged between the 3' end of the section Helix B1 and the 5' end of the section Box Al, and one to seven nucleotides are arranged between the 3' end of the section Box A2 and the 5' end of the section Helix B2o In an eighteenth embodiment of the seventh aspect, which is also an embodiment of the first, second, third, fourth, fifth, sixth, seventh, eighth and tenth embodiment, insofar as this is an embodiment of the sixth, seventh and eighth embodiment, of the twelfth and thirteenth embodiment, insofar as these are embodiments of the sixth, seventh, eighth and tenth embodiments, of the fourteenth and fifteenth embodiment, insofar as these are embodiments of the sixth, seventh, eighth, tenth, twelfth and thirteenth embodiment, or of the seventeenth embodiment, insofar as these are embodiments of the sixth, eighth, tenth, twelfth, thirteenth and fifteenth embodiment, in each case in the herein restricted scope, the intermediate section Z1 comprises six or seven nucleotides, In a nineteenth embodiment of the seventh aspect, which is also an embodiment of the eighteenth embodiment, the intermediate section Z1 comprises the sequence N1N2GN8N3N4N5, wherein N1 = U, C, A or G;
N2 = G or U;
N3 = U or C;
N4 = U or A;
N5 = G or A; and N8 = U or is absent.
In a twentieth embodiment of the seventh aspect, which is also an embodiment of the nineteenth embodiment, the nucleic acid comprises a section Box Al and a section Box A2, wherein the 3' end of the section Box Al is joined 10 directly to the 5' end of the intermediate section Zl, and the 3' end of the intermediate section Z1 is joined directly to the 5' end of the section Box A2e In a twenty-first embodiment of the seventh aspect, which 15 is also an embodiment of the eighteenth, nineteenth and twentieth embodiment, in particular of the twentieth embodiment, the nucleic acid comprises a section Helix B1 and a section Helix B2e 20 In a twenty-second embodiment of the seventh aspect, which is also an embodiment of the twenty-first embodiment, the sections Helix B1 and Helix B2 comprise in each case individually and independently of one another four to eight nucleotides, which are preferably completely or partly hybridised with one another.
In a twenty-third embodiment of the seventh aspect, which is also an embodiment of the twenty-first and twenty-second embodiment, two nucleotides N6, N7 are arranged between the 3' end of the section Helix B1 and the 5' end of the section Box Al in the 5' 3' direction, wherein N6 is G, A or U, and N7 is G or U.
In a twenty-fourth embodiment of the seventh aspect, which is also an embodiment of the twenty-first, twenty-second and twenty-third embodiment, there is no nucleotide between the 3' end of the section Box A2 and the 5' end of the section Helix B2, or the nucleotide sequence GNy is arranged in the 5' 3' direction, wherein N, comprises zero to six nucleotides, preferably 0 or 6 nucleotides.
In a twenty-fifth embodiment of the seventh aspect, which is also an embodiment of the eighteenth, nineteenth, twentieth, twenty-first, twenty-second, twenty-third and twenty-fourth embodiment, the nucleic acid comprises a section Helix Al and Helix A2.
In a twenty-sixth embodiment of the seventh aspect, which is also an embodiment of the twenty-fifth embodiment, the sections Helix Al and Helix A2 comprise in each case individually and independently of one another four to eight nucleotides, wherein preferably the sections Helix Al and Helix A2 are completely or partly hybridised with one anothero In a twenty-seventh embodiment of the seventh aspect, which is also an embodiment of the twenty-fifth and twenty-sixth embodiment, a nucleotides sequence Nx is arranged between the 3' end of the section Helix Al and the 5' end of the section Helix B1, wherein NX comprises zero to five nucleotides.
In a twenty-eighth embodiment of the seventh aspect, which is also an embodiment of the twenty-fifth, twenty-sixth and twenty-seventh embodiment, a nucleotide sequence NZ is arranged between the 3' end of the section Helix B2 and the 5' end of the section Helix A2, wherein NZ comprises zero to six nucleotides<
In a twenty-ninth embodiment of the seventh aspect, which is also an embodiment of the twenty-first, twenty-second, twenty-third, twenty-fourth, twenty-fifth, twenty-sixth, twenty-seventh and twenty-eighth embodiment, the sum of the hybridised nucleotides from the hybridisation of section Helix Al with section Helix A2 and of section Helix B1 with section Helix B2 is ten to twelve nucleotide pairs.
In a thirtieth embodiment of the seventh aspect, which is also an embodiment of the twenty-fourth, twenty-fifth, twenty-sixth, twenty-seventh, twenty-eighth and twenty-ninth embodiment, the nucleotide sequence GNy is arranged between the 3' end of the section Box A2 and the 5' end of the section Helix B2 in the 5'- 3' direction, wherein Ny comprises zero to six nucleotides, preferably 0 or 6 nucleotides.
In a thirty-first embodiment of the seventh aspect, which is also an embodiment of the thirtieth embodiment, the HMGA-binding nucleic acid comprises the following structure Helix Al-NX-H lix B1 N6N7BOx A1 1N2GN8N3N4N5BOX A2G-Ny-He1ix B2 NZ-Helix A2 wherein Nl = U, C, A or G;
N2 = G or U;
N3 = U or C;
N4 = U or A;
N5 = G or A;
N6 = G, A or U;
N7 = G or U;
N8 = U or is no nucleotide;
IVX = zero to five nucleotides;
Ny = zero or six nucleotides; and NZ = zero to six nucleotides;
the section Box Al and section Box A2 are selected in each case individually and independently of one another from the group of nucleotide sequences comprising GGGCG, GGGUG and GGGAG;
the section Helix Al and the section Helix A2 comprise in each case individually and independently of one another four to eight nucleotides, wherein preferably the sections Helix Al and Helix A2 are completely or partly hybridised with one another, and the sections Helix B1 and Helix B2 comprise in each case individually and independently of one another four to eight nucleotides, wherein preferably the sections Helix B1 and Helix B2 are completely or partly hybridised with one another and the hybridising region comprises four to eight nucleotides, and wherein the sum of the hybridised nucleotides from the hybridisation of section Helix Al with section Helix A2 and of section Helix B1 with section Helix B2 is 10 to 12 nucleotide pairs.
In a thirty-second embodiment of the seventh aspect, which is also an embodiment of the thirtieth and thirty-first embodiment, the HMGA-binding nucleic acid comprises a sequence selected from the group comprising SEQ. ID, No. 1, SEQ. ID. No. 2, SEQ. ID, No. 3, SEQ. ID. No. 5, SEQ. ID, No. 6, SEQ. ID. No. 7 and SEQ. ID, No. 13.
In a thirty-third embodiment of the seventh aspect, which is also an embodiment of the twenty-fourth, twenty-fifth, twenty-sixth, twenty-seventh, twenty-eighth and twenty-ninth embodiment, the 3' end of the section Box A2 is joined directly to the 5' end of the section Helix B2.
In a thirty-fourth embodiment of the seventh aspect, which is also an embodiment of the thirty-third embodiment, the HMGA-binding nucleic acid has the following structure Helix A1-N,,-ff~elix Bb-N6N7 Box A1 1N2GN8N3N4NSBOX A2 eIix B2mNZ-Helix A2 wherein Nl = U, C, A or G;
N2 = G or U;
N3 = U or C;
N4 = U or A;
N5 = G or A;
N6 = G, A or U;
N7 = G or U;
N8 = U or is no nucleotide;
5 NX = zero to five nucleotides; and NZ = zero to six nucleotides;
the section Box Al and Section Box A2 are selected in each case individually and independently of one another from the 10 group of nucleotide sequences comprising GGGCG, GGGUG and GGGAG;
the section Helix Al and the section Helix A2 comprise in each case individually and independently of one another 15 four to eight nucleotides, wherein preferably the sections Helix Al and Helix A2 are completely or partly hybridised with one another, and the sections Helix Bl and Helix B2 comprise in each case 20 individually and independently of one another four to eight nucleotides, wherein preferably the sections Helix Bl and Helix B2 are completely or partly hybridised with one another and the hybridising region comprises four to eight nucleotides, and wherein the sum of the hybridised 25 nucleotides from the hybridisation of section Helix Al with section Helix A2 and of section Helix Bl with section Helix B2 is 10 to 12 nucleotide pairs.
In a thirty-fifth embodiment of the seventh aspect, which is also an embodiment of the thirty-third and thirty-fourth embodiment, the HMGA-binding nucleic acid comprises a sequence including SEQ. ID. No. 3.
In a thirty-sixth embodiment of the seventh aspect, which is also an embodiment of the thirty-first embodiment, the HMGA-binding nucleic acid comprises the following structure He1ix B1-N6N7Box A1 1N2GN8N3N4N5 BOX A2 G-NY-Helix B2 In a thirty-seventh embodiment of the seventh aspect, which is also an embodiment of the thirty-fourth embodiment, the HMGA-binding nucleic acid comprises the following structure Helix BI N6N7Box A1 1N2GN8N3N4N5 BOX A2 Slix B2 In a thirty-eighth embodiment of the seventh aspect, which is also an embodiment of the thirty-sixth embodiment, the HMGA-binding nucleic acid comprises a sequence which is selected from the group including SEQ. ID. No. 1.5 and SEQ.
ID. No. 16.
In a thirty-ninth embodiment of the seventh aspect, which is also an embodiment of the first, second, third, fourth, fifth, sixth, seventh, eighth, ninth, tenth, eleventh, twelfth, thirteenth and sixteenth or seventeenth embodiment of the seventh aspect, the HMGA-binding nucleic acid comprises an intermediate section Z2 which comprises 12 to 25 nucleotides.
In a fortieth embodiment of the seventh aspect, which is also an embodiment of the thirty-ninth embodiment, the HMGA-binding nucleic acid comprises an intermediate section Z2, a section Helix Cl and a section Helix C2.
In a forty-first embodiment of the seventh aspect, which is also an embodiment of the fortieth embodiment, a central section Nc is arranged between the section Helix Cl and the section Helix C2 of the HMGA-binding nucleic acid.
In a forty-second embodiment of the seventh aspect, which is also an embodiment of the fortieth or forty-first embodiment, the length of the section Helix Cl and Helix C2 of the HMGA-binding nucleic acid are identical.
In a forty-third embodiment of the seventh aspect, which is also an embodiment of the fortieth, forty-first and forty-second embodiment, the length of the section Helix Cl and Helix C2 of the HMGA-binding nucleic acid is individually and independently three to six nucleotides, In a forty-fourth embodiment of the seventh aspect, which is also an embodiment of the fortieth, forty-first, forty-second and forty-third embodiment, the sections Helix Cl and Helix C2 of the HMGA-binding nucleic acid are completely or party hybridised with one another.
In a forty-fifth embodiment of the seventh aspect, which is also an embodiment of the thirty-ninth, fortieth, forty-first, forty-second, forty-third and forty-fourth embodiment, the central section N, of the HMGA-binding nucleic acid comprises three to five nucleotides.
In a forty-sixth embodiment of the seventh aspect, which is also an embodiment of the thirty-ninth, fortieth, forty-first, forty-second, forty-third, forty-fourth and forty-fifth embodiment, the HMGA-binding nucleic acid comprises a section Box Al and a section Box A2, wherein a nucleotide sequence Nb is arranged between the 3' end of the section Box Al and the 5' end of the section Helix C1 and comprises three nucleotides.
In a forty-seventh embodiment of the seventh aspect, which is also an embodiment of the thirty-ninth, fortieth, forty-first, forty-second, forty-third, forty-fourth, forty-fifth and forty-sixth embodiment, the HMGA-binding nucleic acid comprises a section Box Al and a section Box A2, wherein a nucleotide sequence Nd is arranged between the 3' end of the section Helix C2 and the 5' end of the section Box A2 and comprises two to five nucleotides.
In a forty-eighth embodiment of the seventh aspect, which is also an embodiment of the thirty-ninth, fortieth, forty-first, forty-second, forty-third, forty-fourth, forty-fifth, forty-sixth and forty-seventh embodiment, the HMGA-binding nucleic acid comprises a section Helix Al and a section Helix A2.
In a forty-ninth embodiment of the seventh aspect, which is also an embodiment of the forty-eighth embodiment, the sections Helix Al and Helix A2 of the HMGA-binding nucleic acid comprise in each case individually and independently of one another five to six nucleotides, wherein preferably the section Helix Al and the section Helix A2 are completely or partly hybridised with one another.
In a fiftieth embodiment of the seventh aspect, which is also an embodiment of the forty-eighth and forty-ninth embodiment, a nucleotide sequence Na is arranged between the 3' end of the section Helix Al and the 5' end of the section Box Al of the HMGA-binding nucleic acid, wherein Na comprises one to five nucleotides.
In a fifty-first embodiment of the seventh aspect, which is also an embodiment of the forty-eighth, forty-ninth and fiftieth embodiment, a nucleotide sequence GNe is arranged between the 3' end of the section Box A2 and the 5' end of the section Helix A2 of the HMGA-binding nucleic acid in the 5'-3' direction, wherein, Ne comprises one to two nucleotides, preferably A or UU.
In a fifty-second embodiment of the seventh aspect, which is also an embodiment of the forty-eighth, forty-ninth, fiftieth and fifty-first embodiment, the section Helix Cl and the section Helix C2 of the HMGA-binding nucleic acid have in each case individually and independently of one another a length of five or six nucleotides, wherein preferably the sections Helix Cl and Helix C2 are completely or partly hybridised with one anothera In a fifty-third embodiment of the seventh aspect, which is also an embodiment of the fifty-second embodiment, the HMGA-binding nucleic acid has the following structureo Helix Al-Na Box A1 -N,--rHe1ix C1g-N,-aHelix C2a-Nd Box A2 -G-Ne-Helix A2 (III) wherein Na = one to five nucleotides;
Nb = three nucleotides;
Nc = three to five nucleotides;
Nd = two to five nucleotides; and 10 Ne = one to two nucleotides, preferably A or UU;
the section Box Al and the section Box A2 are selected in each case individually and independently of one another from the group comprising GGGCG, GGGUG and GGGAG, the sections Helix Al and Helix A2 comprise in each case individually and independently of one another five or six nucleotides, and the sections Helix Cl and Helix C2 comprise in each case five or six nucleotides, which are preferably completely or partly hybridised with one another.
In a fifty-fourth embodiment of the seventh aspect, which is also an embodiment of the fifty-third embodiment, the HMGA-binding nucleic acid comprises a sequence which is selected from the group comprising SEQ. ID. No. 8, SEQ. ID.
No. 9, SEQ. ID. No. 10, SEQ. ID. No. 11, SEQ. ID. No. 14, SEQ. ID. No. 22 and SEQ. ID. No. 24.
In a fifty-fifth embodiment of the seventh aspect, which is also an embodiment of the thirty-ninth, fortieth, forty-first, forty-second, forty-third and forty-fourth embodiment, the nucleic acid comprises a section Box 1 and a section Helix Cl of the HMGA-binding nucleic acid, wherein a nucleotide A is arranged between the 3' end of the section Box Al and the 5' end of the section Helix C1o In a fifty-sixth embodiment of the seventh aspect, which is also an embodiment of the fifty-fifth embodiment, the HMGA-binding nucleic acid comprises a section Helix C2 and a section Box A2, wherein a nucleotide G is arranged between the 3' end of the section Helix C2 and the 5' end of the section Box A2.
In a fifty-seventh embodiment of the seventh aspect, which is also an embodiment of the fifty-fifth or fifty-sixth embodiment, the central section N, of the HMGA-binding nucleic acid comprises four nucleotides, wherein 1Vc is preferably GAUG<
In a fifty-eighth embodiment of the seventh aspect, which is also an embodiment of the fifty-fifth, fifty-sixth and fifty-seventh embodiment, the HMGA-binding nucleic acid comprises a section Helix B1 and a section Helix B2e In a fifty-ninth embodiment of the seventh aspect, which is also an embodiment of the fifty-eighth embodiment, the sections Helix B1 and Helix B2 of the HMGA-binding nucleic acid comprise individually and independently of one another in each case five nucleotides, wherein preferably the section Helix B1 is hybridised with the section Helix B2a In a sixtieth embodiment of the seventh aspect, which is also an embodiment of the fifty-eighth or fifty-ninth embodiment, a nucleotide sequence comprising two nucleotides Nj is arranged between the 3' end of the section Helix Bl and the 5' end of the section Box Al of the HMGA-binding nucleic acid, wherein Nj is preferably AG.
In a sixty-first embodiment of the seventh aspect, which is also an embodiment of the fifty-eighth, fifty-ninth and sixtieth embodiment, a nucleotide G is arranged between the 3' end of the section Box A2 and the 5' end of Helix B2 of the HGMA-binding nucleic acid.
In a sixty-second embodiment of the seventh aspect, which is also an embodiment of the fifty-fifth, fifty-sixth, fifty-seventh, fifty-eighth, fifty-ninth, sixtieth and sixty-first embodiment, the HMGA-binding nucleic acid comprises a section Helix Al and a section Helix A2, In a sixty-third embodiment of the seventh aspect, which is also an embodiment of the sixty-second embodiment, the sections Helix Al and Helix A2 of the HMGA-binding nucleic acid comprise individually and independently of one another in each case six nucleotides and preferably the section Helix Al and the section Helix A2 are hybridised with one another.
In a sixty-fourth embodiment of the seventh aspect, which is also an embodiment of the sixty-second and sixty-third embodiment, a nucleotide sequence comprising two nucleotides Ni is arranged between the 3' end of the section Helix Al and the 5' end of the section Helix B1, wherein IV;1 is preferably CA.
In a sixty-fifth embodiment of the seventh aspect, which is also an embodiment of the sixty-second, sixty-third and sixty-fourth embodiment, a nucleotide A is arranged between the 3' end of the section Helix B2 and the 5' end of the section Helix A2.
In a sixty-sixth embodiment of the seventh aspect, which is also an embodiment of the fifty-fifth to sixty-fifth embodiment, the sections Helix Cl and Helix C2 comprise in each case three nucleotides, wherein preferably the section Helix Cl and Helix C2 are hybridised with one another.
In a sixty-seventh embodiment of the seventh aspect, which is also an embodiment of the sixty-sixth embodiment, the HMGA-binding nucleic acid has the following structure:
Helix Al-Ni-E lg~ BI-Nj- Box A1-A-eHelix C1~-N~ ~Helix C2~-e m o m o e m o o ~
G Box A2 -G-~elix B2-A -Helix A2 wherein Ni = two nucleotides, preferably CA;
N; = two nucleotides, preferably AG;
N, = four nucleotides, preferably GAUG;
the sections Box Al and Box A2 are in each case selected individually and independently of one another from the group comprising the sequences GGGCG, GGGUG and GGGAG;
the sections Helix Al and Helix A2 comprise in each case individually and independently six nucleotides, which are preferably hybridised with one another;
the sections Helix Bl and Helix B2 comprise in each case individually and independently five nucleotides, wherein preferably the section Helix B1 and the section Helix B2 are hybridised with one another, and the section Helix Cl and Helix C2 comprise in each case individually and independently three nucleotides, wherein preferably the sections Helix Cl and Helix C2 are hybridised with one another.
In a sixty-eighth embodiment of the seventh aspect, which is also an embodiment of the sixty-seventh embodiment, the HMGA-binding nucleic acid comprises a sequence which is selected from the group including SEQ. ID, No. 12.
In a sixty-ninth embodiment of the seventh aspect, which is also an embodiment of the second to sixty-seventh embodiment, the nucleic acid is one that binds to transcription factors, in particular transcription factors comprising an AT hook.
According to the invention the object is achieved in an eighth aspect by a nucleic acid, which binds to a transcription factor comprising an AT hook, wherein the nucleic acid has a structure according to the seventh 5 aspect.
In an embodiment of the composition according to the sixth aspect the L-nucleic acid is a nucleic acid according to the seventh aspect.
In an embodiment of the use according to the first aspect the L-nucleic acid is a nucleic acid according to the seventh aspect.
In an embodiment of the method according to the second aspect the L-nucleic acid is a nucleic acid according to the seventh aspect.
In an embodiment of the use according to the third aspect the L-nucleic acid is a nucleic acid according to the seventh aspect.
In an embodiment of the method according to the fourth aspect the L-nucleic acid is a nucleic acid according to the seventh aspect.
According to the invention the object is achieved in a ninth aspect by a method for screening an HMGA antagonist or HMGA agonist, comprising the following stepso - providing a candidate HMGA antagonist and/or a candidate HMGA agonist, - providing a nucleic acid according to the seventh aspect, providing a test system which delivers a signal in the presence of an HMGA antagonist and/or an HMGA agonist, and - determining whether the candidate HMGA antagonist is an HMGA antagonist and/or whether the candidate HMGA
agonist is an HMGA agonist.
According to the invention the object is achieved in a tenth aspect by a method for screening an HMGA agonist and/or an HMGA antagonist, comprising the following steps:
- providing an HMGA immobilised on a phase, preferably a solid phase, - providing a nucleic acid according to the seventh aspect, preferably a nucleic acid according to the seventh aspect which is labelled, - adding a candidate HMGA agonist and/or a candidate HMGA antagonist, and - determining whether the candidate HMGA agonist is an HMGA agonist and/or whether the candidate HMGA
antagonist is an HMGA antagonist.
In an embodiment of the tenth aspect it is envisaged that the determination is carried out by testing whether the nucleic acid is replaced by the candidate HMGA agonist or by the candidate HMGA antagonist.
According to the invention the object is achieved in an eleventh aspect by a kit for the detection of HMGA, comprising a nucleic acid according to the seventh aspect.
According to the invention the object is achieved in a twelfth aspect by an HMGA antagonist which is obtainable by a method according to the tenth aspect.
According to the invention the object is achieved in a thirteenth aspect by an HMGA agonist which is obtainable by a method according to the tenth aspect.
According to the invention the object is achieved in a fourteenth aspect by a complex comprising an HMGA protein and a nucleic acid according to the seventh aspect.
The present invention is based on the surprising result that, contrary to the received opinion in the prior art, it is possible to use L-nucleic acids and in particular spiegelmers in order to address intracellular target molecules. The intracellular target molecules are preferably target molecules which are present in a cello The properties inherent in the functional L-nucleic acids due to their structure of L-nucleotides, such as high specificity of the interaction with their target molecules with at the same time a high stability and absence of toxic or immunologically active decomposition products when the L-nucleic acids are used in biological systems and in particular in the animal and human body, does not however allow the cellular mechanisms to be utilised in order, as in the case of intramers, for L-nucleic acids to be coded by a plasmid or generally a vector and thus provide the actually functional nucleic acid by the intracellularly occurring process of transcription.
This inescapable dilemma is solved by the present invention: functional L-nucleic acids and in particular spiegelmers can be transported through a cytoplasmic membrane while retaining their specificity as regards their binding to their target molecule, and their activity. This permeability of the functional L-nucleic acids is inherent in spiegelmers and can be enhanced still further by the use of delivery vehicles or delivery techniques. Without hereinafter wishing to be specific in this matter, the present inventors start from the assumption that functional L-nucleic acids can per se overcome the cytoplasmic membrane, and with the participation of endosomal transport mechanisms in overcoming the cytoplasmic membrane, are able to free this from the vesicle structures that are thereby formed, with the adoption of a two-dimensional or three-dimensional structure, which allows the specific interaction of the functional nucleic acid with its target molecule> With the technical teaching disclosed herein, the principle developed for aptamers of utilising intracellular transcription mechanisms in order to create aptamers in the cell is intentionally avoided, and for the first time means are provided for using functional L-nucleic acids and in particular spiegelmers in cells.
As employed herein in a preferred embodiment, the term functional nucleic acids denotes those nucleic acids that are different from structural, in particular naturally occurring structural nucleic acids such as rRNAs or that are different from coding nucleic acids such as mRNAs. In particular functional nucleic acids are nucleic acids which, on account of their two-dimensional and/or three-dimensional structure, are able to bind to target molecules. In a particularly preferred embodiment the binding to the target molecule takes place not by hybridisation or base pairing on the basis of Watson-Crick base pairings or a Hoogsteen base pairing. Particularly preferred functional nucleic acids are aptamers and spiegelmers, A L-nucleic acid is in a preferred embodiment a nucleic acid that is completely, substantially or partly synthesised from L-nucleotides. It is particularly preferred if the L-nucleic acid consists completely of L-nucleotides. The term "substantially" denotes in this connection an embodiment in which that part of the L-nucleic acid which is responsible for the interaction with the target molecule, or that part which mediates the binding to the target molecule, consist of L-nucleotides or is synthesised from these, As used herein, a functional L-nucleic acid is a functional nucleic acid which is completely, substantially or partly synthesised from L-nucleotides>
The synthesis of L-nucleic acids is known to the person skilled in the art in this field and is described for example in Nolte et a1o, Nat. Biotech, 14, 1116-1119, 1996.; and Klussmann et a1., Nat. Biotechnol, 14, 1112-1115, 1996.
The basic process for the production of aptamers is 5 described for example in Tuerck et aI. Science, 248, 505-510, 1990; or Ellington et a1. Nature, 346, 818-822, 1990, while the basic process for the production of spiegelmers is described for example in Nolte et a1., Nat. Biotech, 14, 1116-1119, 1996 õ or Klussmann et al., Nat. Biotechnol, 14, 10 1112-1115, 1996. Spiegelmers are thus aptamers which consist of L-nucleotides instead of D-nucleotides. In connection with the production of aptamers and spiegelmers, the term target molecule denotes that molecule which is used in the selection process to produce aptamers and 15 spiegelmers, or denotes that molecule which is ultimately bound by the aptamer or the spiegelmer.
In a preferred embodiment an intracellularly active agent is a chemical compound which when present in a cell is able 20 to bind to a molecule. In this connection it is particularly preferred if the cell is a cell that exists isolated in a tissue or an organ, but preferably not in a human or animal body. If the intracellularly active agent is a spiegelmer, then preferably it is an intracellularly 25 active agent if it is able to bind to an intracellular target molecule. Alternatively the spiegelmer is an intracellularly active agent if it is able to bind to its target molecule under conditions such as exist in a cell<
Tests in order to determine these properties are known to 30 the person skilled in the art in this field, and include for example equilibrium binding assays under buffer conditions such as exist intracellularly (ionic strength and solute composition, pH, temperature), as disclosed in Example 1.
In a preferred embodiment the target molecule of the L-nucleic acid, in particular of the functional L-nucleic acid, is an intracellular receptor. An intracellular receptor, as used herein, is preferably a chemical compound or a chemical structure or respectively a part thereof, with which the functional L-nucleic acid interacts, and is preferably a compound or structure to which the functional L-nucleic acid binds, wherein the intracellular receptor, i.e. the chemical compound or the chemical structure or respectively a part thereof, is present intracellularly, i.e. is present in a cell, as is preferably described in the preceding paragraph. In this connection it is possible within the scope of the present invention for the intracellular receptor to be the target molecule in the creation of the functional nucleic acid, in particular the functional L-nucleic acid.
In one embodiment the term "receptor" denotes any interaction partner, preferably a specifically binding interaction partner of the functional nucleic acid, i.e.
denotes an interaction partner interacting with the functional nucleic acid, which has a specific spatial structure, charge distribution, hydrophobicity distribution, etc. In a particularly preferred embodiment the interaction partner corresponds to the target molecule of the functional nucleic acid, as was used in the creation of the functional nucleic acid. In this connection it is within the scope of the present invention that a receptor can also be different from the target molecule used in the creation of the functional nucleic acid, though the specific interaction is due to a cross reactivity of the functional nucleic acid between the interaction partner and the target molecule used in the creation of the functional nucleic acid.
In a preferred embodiment the term "intracellular receptor"
denotes a receptor that is present in a cell, or a receptor that can be present in a cell, that occurs under natural circumstances in a cell, or that under such circumstances exist in a cell. In this connection it is particularly preferred if the cell is a cell that occurs isolated in a tissue or an organ, but preferably not in a human or animal body. As used herein, the term "intracellular receptor"
however also denotes a receptor that is present under conditions such as exist in a cell.
In a preferred embodiment the term "cell" denotes a cell which is selected from the group comprising prokaryotic and eukaryotic cells. Preferably the eukaryotic cell is selected from the group comprising fungal cells, plant cells, animal cells and human cells. In an alternative embodiment the term cell generally denotes herein a compartment bounded by a phospholipid double membrane, which in a preferred embodiment corresponds to a cytoplasmic membrane, and which is separated by the membrane from the surroundings. The separation from the surroundings is in this connection not a complete separation, but allows an energy transfer and a mass transfer (substance exchange) between the cell and the surroundings. The mass transfer is preferably restricted.
In the case where the cell is separated from the surroundings by a cytoplasmic membrane or by a membrane similar to a cytoplasmic membrane, the restriction of the mass transfer is defined by the transport properties of the membrane. In one embodiment the term cell herein thus also includes vesicles and/or compartments of a prokaryotic or eukaryotic cell as defined herein, which in turn are present or may be present both within a prokaryotic or eukaryotic cell, as well as outside such a prokaryotic or eukaryotic cell, for example as vesicles or parts of a prokaryotic or eukaryotic cell surrounded by a cytoplasmic membrane, which in one embodiment can be present in a body fluid. In a preferred embodiment, in a cell according to the second alternative embodiment it is envisaged that the conditions within such a cell correspond substantially to those occurring in a prokaryotic or eukaryotic cell, in particular as regards the factors which influence the binding of the functional nucleic acid to its target molecule, In a preferred embodiment the body fluid is selected from the group comprising blood, urine, liquor (anatomical fluid), lymph fluid, serum, plasma, vaginal secretions, saliva and sperm.
In one embodiment the receptor is defined by its function in a cell. Accordingly the receptor can be selected from the group comprising molecular receptors, enzymes, metabolic intermediates, signal peptides, chaperone molecules and intracellular structures such as for example ribosomes, mitochondria, elements of the cytoskeleton such as for example tubulin and actin filaments, endosomal particles, lysosomes, other intracellular structures such as vesicles, in particular intracellular vesicles. As used herein the term molecular receptor denotes in a preferred embodiment a molecule which accepts information and transmits this within a cell, a tissue, an organ or an organism. The information is typically mediated by a molecule which interacts with the molecular receptor. As a result of the interaction the molecular receptor is able to generate a signal. Such a signal can be based on the change in the confirmation and/or of the activity of the receptor or can be manifested therein. The signal itself is able to transmit in another form the information received or processed by it. As a result of the change in the confirmation or activity of the molecular receptor, the signal can preferably be a chemical, biochemical or an electrical signal. Preferably the molecular receptor is part of a reaction cascade, and more preferably part of a signal cascade. The information transmitted by a molecular receptor can be quantitative and/or qualitative information, for example concerning the presence of a compound and/or its concentrationo In a preferred embodiment the term "metabolic intermediates" denotes all those compounds which, due to metabolic activities in a cell, occur as constituents of catabolism as well as of anabolism.
In a further embodiment the receptor is defined by its chemical nature. Preferably the receptor is selected from the group comprising polypeptides, carbohydrates, nucleic acids, lipids and combinations thereof. As used herein, 5 the term polypeptide preferably denotes any polymer consisting of two or more amino acids. Preferably the amino acids are L-amino acids, though D-amino acids may also be used within the scope of the embodiment. As used herein the term "nucleic acids" preferably denotes a 10 polymer of two or more nucleotides or nucleotide analogues which are known to the person skilled in the art in this field, wherein the nucleotides may be either D-nucleotides or L-nucleotides or mixtures thereof. Preferred combinations include glycosylated polypeptides and 15 glycosylated lipids.
A particular group of intracellular receptors are transcription factors and DNA-binding proteins which bind to an AT hook. Examples of transcription factors are given 20 in the following table 1:
Table 1: Transcription factors gamma)OBP 14 3-3 epsilon 70-75K protein (STAT5A)4 14 3-3 zeta 80-90K protein 120-kDa CRE- 50-55K protein AAF
binding protein 53BPI ABF-1 A-DA2 APm2alphaE I=3achlt ADA3 AP 2beta Bach2 A ,4-NF1 AP-2garnrna BAF155 AFP1 AP-2rep BAF47 AhR AP-3 (1) BAF53a AhR:Arnt AP-3 (2) BAF60A
AI I N3 AP-4 Barhll Ai I s AP-5 Earh12 AIRE APC Barxl AKNA AR Barx2 ALF Arnt Bcim3 ALL 1 Arnt (774 AA form) BCL-6 alpha-CBF ARNT2 be4a-catenin alpha-CF2b ASC-2 Bin1 alphaH ASPP1 BMAL2 alphaH2-alphaH3 ASPP2 13-Myb Alx-4 ATBFI-B BP1 aNVEF-2 ATF BP2 AML1 a ATF2 Brachyury AML1 b ATF-2 BRCA1 AIVIL1 c ATF-2:c-Jura BRCA2 AML1 eltaN ATF3 BRG1 AML2 ATF3 deltaZlP ERIP1 AML3 ATF4 Brm AML3a ATF5 BTEBI
AML3b ATF6 BTEB2 P.MY-1 L ATF-a BTEB3 A-Myb ,4'TF adelta BTEB4 ANF AT M B-TF I I
AP-1 ATPFI C/EBPalpha AP-2a9phaA Bach1 C/EBPbeta C/EI3Pdelta CIITA CtBP2 C/EBPepsllon cmJun CTCF
C/EBPgamma c-Jun:Jun CTF
c-abl CUM2 CTF-2 CACCC-binding factor CLOCK Cl F-3 CAR cmMyb CTF-5 CAR:R<R-alphe c-Myc CTF 7 Cart-I C-Myc 1 CUP
CBAF cpMyc:6Viax CUTLI
CBF (4) CNBP CUTL2 CBF (5) CoS Cx CBP COIJP-TF1 cyclln A
CCAAT- OOUP-TF2 cyclira T1 binding factor CP1A cyclin T2 CCF CP1C cyclln T2a CCG1 CP2 cyclin T2b CCK-la CPBP DAP
CCK-1 b CPE binding protein AX1 Cdc5 ORF-BPe DBF4 cdk2 c-Rel DBP
cdk9 c-Rel:RelA DbpA
Cdx 1 CREMalpha DbpAv CDX2 CREST DbpB
Cdx 4 CRF DCoHm c-Fts-1 Crx DDB
c-Fts-2 CSA B-1 c-Fos CS13Pm1 DEC1 ChCh CSEN DEC2 CHOP-10 c-Ski DEF
Chx10 Ct13P1 deltaCREB
deftaFosl3 E2F EIIaE Cbeta deltaMax E2F+E4 EivF
DeltaN p63beta E2F~p107 EKLF
DeltaN p73afpha E2F-1 ELF-I
DeltaN p73beta E2F-1:IOP-1 ELFR
DeltaN p73gamma E2F-1.DP-2 efios DeftaNp63afpha E2F-2 Efk-1 DeftaNp63garnma E2F-3a Emx-1 Derrvao-1 E2F-4 Emx-2 F-1 E2F-4, P-1 En-1 DF-2 E2F-4:DP-2 En-2 DF-3 E2F-5 ENFf-binding protein Ix-1 E2F-6 ENK fF 1 Dlx-2 E2F-7 EP400 fx 3 E47 EPAS 1 fx-4 (long isoform) E4BP4 Epicardin Ix-4 (short isoforrn) E4F epsifonF1 -x-5 E4FI ER alpha Ix-6 E4TF2 ER-alpha:ER-beta P 1 E7; H1'V-16, Papilloma ER-beta DP-2 Virus type 16 ER-betal DPBF EAR2 ER-beta2 RfL1 EBF ER-beta3 DS I F EBP-80 ER-beta4 DSIF-p14 EC2 ER beta5 SIF-p160 EF1 ERF
DTF Egr-1 Erg-1 1J1C1 Egr-2 Erg-2 DUX2 Egr-3 ERM
DUX3 Egr-4 ERRI
lJX4 EIIaE-,4 ERR2 E EIIaE-13 ERR3 E12 EIIaE Calpha EFZR3-1 ERR3m2 FOXBI F X01 a ERR3-3 F XC1 F X01 b ERRalphal FOXC2 FOX02 ESE-1 FOXD1 F X03a ESE-la FOXD2 F X03b ESE-1 b FOXD3 F X04 ESE-2a FOXEI FOXP2 ESE-2b FOXE3 FOXP3 ESE-3a FOXF2 Fra-1 ESE-3b F XG1 a Fra-2 ESXR1 F XG 1 b FTF
ETF F XG1 c FTS
Efs-1 deltaVll F XH1 FXR
Evi-1 F X11 FXReRXR-elpho EVXI F XJ 1 e FXR-alpha EZF-2 F XJ 1 b FXR-befal EZH1 FOXJ2 (long isoform) FXR-beta2 EZH2 FOXJ2 (short isoform) G factor F2F FOXJ3 G6 fector factor 2 FOXK2a GABP
FBP FOXK2b GABP-alpha f-EBP FOXK2c GABPB
FEV F XL1 GAI3P-betal Fgf3 FOXL2 GABP-beta2 FKBP59 FOXMIa GAF
FKHL13 F XM 1 b gammaCAAT
FKHRLIP2 F XfVi1c gamrnaCAC1 FKLF FOXN1 gammaCAC2 FIi-1 FOXN2 GATA-1 FosB FOXN3 GATA-2 GATA-3 HAF FiiNF-A
GAT,4-4 FIAN 1 HiNF-B
GATA-5 HAND2 FliNF-C
GATA-6 F8E9 HiNF-Gbx1 FI AC1 HiNF 3 Gbx2 HDAC2 HiNF-E
GCF HDAC3 HiNF-P
GCMa HDAC4 HIP1 GCN5 HDAC5 Hli/-EP2 GCNF-1 hDaxx Hlf GF1 HDBP2 HLTF (Met123) GKLF Fleet-inducing factor HLX
GLI2 HEE1-p67 HMG I
GL13 HEE1-p94 HMG I(Y) GLIS2 HEF-IB HfViG Y
GR-alpha HENI HMGImC
GR-beta HEN2 HMXI
GRF-1 HES-1 HNF-lalphe A
Gsc HES-2 HRIF lalpha-B
Gscl Hesxl HNF lalpha C
GTdC Hex HNFm1 bete-A
GTmIIA Heyl HNF 1 bete B
GT-I I13alpha Hey2 HNFm1 beta-C
GT-lil3bete HeyL HNF-3 H1TF1 HFH-1 HNF-3elpha HITF2 HIC-1 HRIF 3bata FIITF2A Hlc-5 HiVF-3gamma H4TF 1 HIFm1 HNF-4 H4TF-2 HIF 1 alpha HNF-4alpha HNF-4alphal HOXC11 IB1 HNFm4alpha2 HOXC12 IBP-1 Hd<9F-4alpha3 HOXC13 CER-II
FINF-4alpha4 HOXC4 CER-Ilgarnma HNF-4alpha7 HOXC5 d1 FiNF-4gamma HOXC6 d1 H
HRIF-6alpha HOXC8 d2 hnRNP K HOXC9 d3 HOX1 1 HOX 10 d3 I Holr-1 HOXAIO PL2 FIOX 13 gPE-1 HOXA11 HOXD3 gPE 2 HOXA13 HOXD4 gPE-3 HOXA2 HOX 6 k-1 HOXA3 HOXD9 kappaB
HOXA4 Hp55 kappaB alpha HOXA5 Hp65 kappaB-beta HOXA6 HPX42B kappaBR
HOXA7 HrpF II-1 RF
FiOXA9E HSF L-6 RE-BP
HOX81 HSFI (long) II-6 RF
HOXE13 HSFI (short) 1NG1 HOXE2 HSF2 NG1 b HOXB3 HSF4a RISAF
HOXB4 HSF4b PCS-BF
HOX85 HSF4c PF1 FIOX136 hsp56 PF1:Pbx HOXB7 Hsp9O RF 1 HOXB8 A-1 RF-1:C/EBPbeta HOXB9 ASPP RFm2 RF-4 KR3 Lmol RF-5 KRFm1 Lmo2 RF-6 KRN Lli/d03 RF-7B Ku autoantigen LMXIB
RF-7H Ku70 LmMyc 1(long form) RF-8 Ku80 L-IVIyc-1(short form) RF-9 KUP L-IVdyc-2 rlE LAF-4 LlJNm1 RX-1 LANA; KSHV, Kaposi's LUN-2 RC2a sarcorrua-associated LXR-alpha Irx-3 herpes virus LXR alpha:RXR-alphe rx-4 (herpes virus 8) LXRmbete SGF-1 LBP-1 LXR-beta:R3CR alphe SGF-3 LBP-la Lyl-1 SGF-3alpha LBP-ld M factor sl-lalpha LBP-32 Mad1 TF LBP-9 Maf TF-1 LBXI MafB
TF-2 LCR-F1 MafF
JRF LEF-1 MafG
JunB LEF-1 E MafG:MafG
Jon13:Fra-1 LF-A1 MafK
JunB:Fra-2 LHXI MAML1 JunD LHX2 MASH-1 Jun :Fra-2 LHX3a Max kappaY FaKtor LHX3b IViex1 KBP-1 LHX5 Max2 KER1 LH3C6.1a MAZ
KER-1 LHX6.1 b IVIAZi KLF7 LITAF 6ViBF9 Koxi LKLF MBF2 MBF3 IVliz-1 NERF-2 IVISP-1 (1) MLX Net IVISP-1 (2) IUIM-1 Neuro 1 MBP-2 MondoA NEtJR -2 MECP-2 MR NF III-a MEF-2A MRF-2 NF III c MEF-2E1 lUdsx-1 NF III-e MEF-2C Msx-2 iVF-1 MEF-2C/delta32 IVITA1-L 1 NF-4FA
IViEF-2C/delta3 MTB-Zf NF-4FB
MEF-2C/delta3,32 IUITF-1 NF-4FC
MEF-21D00 mtTFA NF-AB
MEF-2DOB Mxi1 NF-ATI
MEF-2 A Myf-3 NF-AT1 MEF-2DA'O Myf-4 NF-AT2 MEF-2DAB Myf-5 NF AT2-alpha MEF-2 A'S Myf-6 NF-AT2-beta Meis-1 Myocardin, Splice Form NF-AT3 Meis-2a 1 NF-AT4 Meis-2b Myo NF-AT5 Meis-2c MyoD:E12 NfbetaA
Meis-2d MyT1 NF-CLEOa Meis-2e MZF-1 NF-CLE b Meis-3 NC1 NFdeItaE3A
Melm13 NC2 NFde1taE3B
VVIeox1 NCORI NFdeltaE3C
Meoxla NCOR2 NFdeItaE4A
Meox2 NCX NFdeltaE4S
MHox (K-2) NELF NFdeltaE4C
Mi F-1 NERF Nfe MI'fF NERF-la NF-E
IUIIXLI NERF-1 b NF-E2 NF-E2 p45 NF-Y NRF
NF-E3 NF-YA Nrf1 NFE-6 VZ9F-Zc NRF-1 NF-Gma I<9F 2z NrT'1:iViafG
NF-GMb NGN3 Nrf1:k/IafK
NFI/CTF NF4P-1 Nrf2 NFIA NHF-2 Nrf2:MafG
NF113 NHP3 Nrf2:MafK
NF-IL-2 NHP4 NRF-2betal NF-IL-26 Nkx2-1 NRF-2garnmal NFIX Nkx2-2 NO
NF-jun Nkx2-3 Nrf3:MafK
NF-kappaB Nkx2-5 NRL
NF-kappaB(-slmllar) Nkx2-8 NRSF
NF-kappaBi Nkx3-1 NRSF Form 1 IVF-kappaB 1 precursor ti9kx3-1 vi NRSF Form 2 NF-kappaB2 Nkx3-1 v2 NTF
NF-kappaB2 (p49) Nkx3-1 v3 Nur77 NF-kappaB2 precursor Nkx3 1 0 NlJRR1 RIF-kappaE 1 Nkx3-2 OAZ
NF-kappaE2 N kx6-1 OC-2 NF-kappaE3 Nkx6-2 OCA-B
NF MHCIIA Nmi Octa factor NF-MHOI IB N-Myc Octamer IZIF-muE1 N-Oct-2alpha binding factor NF-rnoE2 N Oct 2beta Oct-B1 NF-muE3 N-Oct-4 oct-B2 NF-S NORI oct-B3 IVF-X1 NPA3 Oiigol NF-X2 NPAS 1 Otx1 NF-X3 NPAS2 Otx2 NF-Xc NP- I CI I Otx3 OZF Pax-3 PbxlA:HoxD4 p107 Pax-3A Pbxia:IPFI
p130 Pax-313 Pbx1 b p160MBP Pax-4a PbxlB:HoxA5 p28 Modulator Pax-5 PbxlB:HoxB7 p300 Pax-6 PbxlB:HoxB8 p38erg Pax-6 / Pd-5a PbxlB:HoxC8 p40x; HTLV-I, T-cell Pax-7 PbxlB:HoxD4 Lymphotropic virus Pax-8 Pbxlb:PKNOXI
type I Pax-8a Pbx2 p45 Pax-8b Pbx2:FioxB8 p49erg Pax-8c Pbx2:Hoxc6 p50:c-Rel Pax-8d Pbx2:PKNOX1 p53 Pax-8e Pbx3a p55 Pax-8f Pbx3a:Floxc6 p55erg Pax-9 Pbx3b p63 Pbx PC2 p63alpha Pbxi PC4 p63beta Pbxl: Hoxl31 PC5 p63delta Pbx1:HoxB2 PCAF
p63gamma Pbxl:hioxB3 PDEF
p65delta Pbxl:HoxB4 PEA3 p73 Pbxl:HoxB5 PEBP2alpha p73alpha Pbxl:HoxB6 PEBP2beta p73beta Pbxl:hioxl38 PGC-1 p73delte Pbx1:PKN X1 PITXI
p73epsilon Pbxl:Tcl3 PITX2 p73eta Pbxla PITX2A
p73gamma PbxlA:HoxA5 PITX2A: Ctlkx2.5 p73kappa Pbxia:Hoxb7 PITX2B
p73zeta Pbxla:Hoxb8 PITX2B:Nkx2.5 Pax-1 Pbxla:Hoxc6 PITX2C
Pax-2 Pbx1 A, HoxC3 Pll X2C: Nkx2.5 PITX3 P U5F1 PU.1 PKNOXI P U5F1A PuF
PKNOX2 POU5F1B Pur factor PLAGLI POU5FIC pX; HBV, Hepatitis B
PLAGL2 POU6F1 Virus PLZF PPAR-alpha PXR-1 PML PPAR-alpha:RXR- PXR-1: R-alpha PML-3 alpha PXR-1:RXR-beta Pmx2a PPAR-beta PXR-2 Pmx2b PPAR-gammal RI
PNR PPAR-gamma2 R2 P -B PPAR-gamma3 RAR alpha Pontin52 PPAR-gamma4 RAR-alpha:RXR-alpha P U1F1 PPUR 12AR-alphae R-beta POU2F1 PR RAR-alpha: R-P U2F2 PR A gamma POU2F2 ( ct-2.1) PR B RAR aipha1 POU2F2B pRb R alpha2 POU2F2C PRDI-BFI RAR-beta POU2F3 PR I-BFc RAR-beta:RXR-alpha POU2F3, soform a Preb RAR-beta2 POU2F3, soform d1 Prop-1 RAR-gamma POU2F3, soform d2 PROXI RAR-gamma:RXR-POU3FI PSEI alpha POU3F2 P-TEFb RAR-gammal POU3F2 (N-Oct-5a) PTF Rb:E2F-1. P 1 POU3F2 (N-Oct-5b) PTFalpha RI3P60 POU3F3 PTFbeta RBP-Jkappa POU3F4 PTFdelta Ref- 1 P U4F1(I) PTFgamma ReIA
P U4F1(s) Pu box binding factor Rell3 P U4F2 Pu box binding factor REVERB-alpha POU4F3 (BJA-B) REVERB-beta RFX1 SHOX2b Smad7 RFX1:RFX2 SHOXa Smad8 RFXI:RFX3 SHOXb SMIF
RFX2 SHP Sna RFX3 SI I I-p910 SnoN
RFX4 SIII p15 Sox1 RFX5 SIIImp16 Soxi O
RFX5:RFXAP:RFXANK SImi Soxl 1 RFXANK SIIVi2 Sox12 RFXAP SIPI Soxl 3 RFX-B-delta5 Six-I Sox14 RF-Y Six-2 Sox17 R Ralpha1 Six-3 Soxl 3 R Ralpha2 Six-4 Sox2 RORalpha3 Six-5 Sox20 RORbeta Six-6 Sox2l RORgamma SKiP Sox3 Rox SLUG Sox4 RP58 Smadl Sox5 RPFI Smad2 Sox7 RPGalpha Smad2 (437 Sox6 RREB-1 amino acids) Sox9 RSRFC4 Smad3 SpI
RSRFC9 Smad3:Smad4 Sp2 RVF Smad4 Sp3 RX Smad4delta3 Sp4 RXR-alpha Smad4delta4 Spi-B
RXR-beta Smad4delta4-6 SPT16 RXR-gamma Srnad4delta4-7 SRC-1 SAP-1 a Smad4delta5-6 SRC-3 SAP-lb Smad4delta6 SRCAP
SF-1 Smad5 SREBP-la SHOX2a Smad6 SREBP-lb SREBP-1c TAF(ll)100 TBX19 SREBP-2 TAF(ll)125 TBXIA
SRE-ZBP TAF(II)135 TBX1 B
SRF TAF(I I)170 TBX2 SRF:SRF TAF(II)16 TEX20 SRY T,4F(II)20 Tbx22 SSRP1 TAF(II)250 TBX3 (722 Staf-50 TAF(II)250 elta amino acids) STAT1 TAF(II)23 TBX3 (742 STAT1 eSTAT1 TAF(I1)30 amino acids) STAT1:ST,4T3 TAF(I I )31 TBX4 STATlalpha TAF(II)55 TBX5 (long isoform) STAT1 beta TAF(II)70-alpha TBX5 (short isoform) STAT2 TAF(I I)70-beta Tbx5:Nkx2,5 STAT3 TAF(II)70-gamma TBX6 STAT3:STAT3 TAF-I TCF
STP,T58 Tal-1 TCF-1 A
STAT5B:STAT5B Tal-1 beta TCF-113 STAT6 Tal-2 TCF-1 C
SXR TAR factor TCF-1 SXR:R -a9pha tat; HIV-1, l"CF 1E
SYT Immunodeficiency virus TCF-I F
T3R-alpha: type 1 TCF-1 G
T3R-alpha:RXR-alpha Tax; HTLV-I, 7'-cell TCF-2aipha T3R-alphal Lymphotropic TCF-3 T3R-alpha2 virus type I TCF-4 T3R-betal T-bet TCF-4(K) T3R-beta2 TBP TCF-4B
TAF(I)110 Tbr-1 TCF-4E
TAF(I)46 TBR2 TEF
TAF(1)63 TBX18 TEF-1 TEF-2 TFIIFi-M 15 TRF (2) 'fEF-3 TFI IH-p34 TRRAP
TEF-5 TFI I FI-p44 TllVISI-TEL1 'fFIH-p62 TxRE BP
Tel-2a TFI IFI-p3 TxREF
Tel-2b TFI IHmp3 ,CAK UBF
Tel-2c TFIH-p90 UBP-1 Tel-2d TFI I-I IJEF-I
Tel-2c TFI I IA UEF-2 TeI-2f Tf-LFI IJEF-3 TFE3 Tf-LF2 UEF-4 TFEE-A TGIF USF1:USF2 TF11,4 TGT3 USF2b TFI IA-alpha/beta TIEG-1 Vav precursor (main form) TIF1a Vax-2 TFIIA-alpha/beta TIF1 g VDR
precursor (sobsidiary form) TIF2 ilITF; Vaccinia virus/, TFIIA-gamma TLEI Homo sapiens TFIIB TLX Vpr; FIIV-1, TFII TLX3 Immunodeficiency virus TFIIE TMF type I
TFIIE-a9pha TR2 11 WBSCR14 TF I I E-beta TR2-5 WSTF
TF I I F TR2-9 VVT'I
TFIIF-a9pha TR4 WT1 I'FIIF-beta TRAP WTI -KTS
TFIIH TREB-1 WT1 -del2 TF11H* TRE13-2 VVT1 -KTS
TFI I H-CAK TREB-3 W'T1 de12 'fFIIH-cyclin H TREFI XBP-1 TFIiH MAT1 TREF2 xVi/9V
YBm1 ZF2 ZNF-20 YLm1 ZFX ZNF33a yy1 ZFY ZNF35 ZEE (1124 AA) ZNF11s ZNF7 ZEB (1154 AA) ZNF124 ZNF76 ZER6 p52 ZNF133 ZNF83 ZER6 p71 ZNF143 ZNF85 A further group of intracellular receptors are the intracellular target molecules listed in the following Table 2.
Table 2: Intracellular target molecules "long-chain" fatty Acetyl-CoA malate-citrate Amyloid precursor protein acid CoA ligase synthase Ankarin "major basic" protein Acetylglucosarninyl Arginase "mixed function" transferase Argininosuccinate oxygenase Acetylspermine synthetase 11 R-hydroxy6ase (EC deacetylase Argininosuccinate lyase 1.1 4.15A) Acetyl transcylase Aromatase 9 3mhydroxylase Aconitase Aryisulfatase 1 -acylgiycerol-3- Actin Aspartate phosphate acyl transferase Adenosine deaminase aminotransferase 2,3- Adenosyl homocysteine Aspartate oxidosqualene ianosterol hydrolase transcarbamoylase cyclase Adenosyl rnethionine ATPase 21 -steroid hydroxylase decarboxylase ATP diphosphohydrolase (EC 1.14,99,10) Adenylate cyciase bc/ 2 oncogene protein 24,23-sterol reductase Adenylate deaminase Connective tissue-3-hydroxybutyrate Adenylate kinase activating peptide dehydrogenase Adenylo-succinate lyase C5a-inactivating 3-ketothiolase Adenylo- succinate factor synthase 3-R-hydroxysteroid Alanine aminotransferase Calcitonin dehydrogenase Aldolase Calmodulin (EC5.3.3.1) Aldose reductase Calpain I
5'mnucleotidase Alkaline phosphatase Calreticulin 8-oxoguanosine Alcohol dehydrogenase Carbamoyl phosphate deglycosylase Amidophosphoribosyl synthetase abi oncogene protein amine transferase Carbonate anhydrase Acetolactate synthase AMP Casein kinase 1 Acetylcholine esterase phosphodiestererase Casein kinase 2 Acetyl-CoA carboxylase Amyloid A4 protein Catalase Catechol ihydrouracil Glycerol phosphate methyltransferase dehydrogenase acyltransferase Cathepsin Dioxygenase Glycerol phosphate Cathepsin B and L Dopamine monooxygenase dehydrogenase cdc 10 Dynenin Glycinamide cdc 13 p60 Elastase ribonucleotide cdc 2 p34 Elastin transformylase cdc 25 p30 Eloagation factor Tu GTP-biading protein Chaparonin Endo-rharnosidase Haemoglobin A
Cholesterol esterase Enolase Haemoglobin Al Cholesterol Enoyl-ACP-hydratase Haemoglobin Barcelona mono-oxygenase Enoyl ACP-reductase Haemoglobin Barts Citrate synthetase ets oncogene protein Haemoglobin Beth Israel Clathrin Ferritin Haemoglobin Bunbury Collagenase Ferrodoxin Haemoglobin Cochin-Port Cortisone dehydrogenase Fatty acid synthetase Royal crk oncogene protein figr oocogene protein Haemoglobin Cowtown Cyclin A and 6 fps oncogene protein Haemoglobin Cranston Cyclophilin Fructose bisphosphate Haemoglobin Creteil Cytidine deaminase aldolase Haemoglobin Cytidylate deaminase Fumarase Haemoglobin Cytochrome C peroxidase GABA aminotransferase Los Angeles Cytochrome P450 Galactosidase Haemoglobin Punjab Cytosine Gelatinase Haemoglobin F
methyltransferase Gelsolin Haemoglobin Gower dbl oncogene protein Glucophosphate isomerase Haemoglobin Defensin Glucosylceramide Hammersmith Diacyl glycerol galactosyl transferase Haemoglobin Hiroshima acyltransferase Glutaminase Haemoglobin Indianapolis Dihydrofolate reductase Glutamine phosphoribosyl Haemoglobin Kansas Dihydroorotatase pyrophosphate Haemoglobin Kariya Dihydroorotate amidotransferase Haemoglobin Kempsey dehydrogenase Haemoglobin Kenya Haemoglobin Lepore Hydroxyrnethylglutaryl- MyeBoperoxidase Haemoglobin M CoA-reductase Myofilament Haemoglobin M Hydroxymethylglutaryl- rnyristoyl transferase Hyde Park CoA-synthetase Na I K ATPase Haemoglobin M lwate Hydroxysteroid N-acetylglucoronidase Haemoglobin M Saskatoon dehydrogenase NA -dependent sterol-4 Flaemoglobin Nancy Hypoxanthine-guanine- carboxylase Haemoglobin Philly phosphoribosyl transferase NADase Haemoglobin Quong Sze IMP-dehydrogenase NA PH dependent 3-Flaernoglobin Raleigh Indole lyase oxosteroid reductase Haemoglobin Ranier Inositol phosphate Nexin Haemoglobin S phosphatase Nmras oncogene protein Haemoglobin Sealy fnt-9 oncogene protein Nucleolus protein B23 Haemoglobin Seattle Isocitrate lyase Nucleoside diphosphate Haemoglobin St. Louis Kinin-forming enzyme kinase Haemoglobin St. Mande Ki-ras oncogene protein Ornithine Haemoglobin Titusville Lactate dehydrogenase aminotransferase Haemoglobin Torino Lactoferrin rnithine Haemoglobin Wayne Laminin carbamoyltransferase Haernoglobin'(ork Leukocyte elastase rnithine decarboxylase Haemoglobin Zurich Lipocortin Orotate decarboxylase Ha-ras oncogene protein Lipoxygenase Orotate Hexokinase L-myc oncogene protein phosphoribosy9 transferase Histaminase Lysozyme p53 Histidine decarboxylase Malate dehydrogenase Peptidyl arnidoglycolate HSP 27 IUVaiate synthase lyase Hydropyrimidine Malonyl transacylase Peptidyl prolyl isomerase hydrolase Mannosidase PF4 Hydroxyacyl-CoA- met oncogene protein Phenylalanine dehydrogenase Methaemoglobin hydroxylase Hydroxymethylglutaryl Methionine Phosphatidate phosphatase CoA-splitting enzyme adenosyl transferase Phosphoenol pyruvate mos oncogene protein carboxykinase Phosphofructokinase rei oncogene protein tRNA synthetase Phosphoglucokinase Ribonucleotide reductase Tropomyosin Phosphoglucomutase Ribose phosphate- Tryptophan synthase Phosphogiycerate kinase pyrophosphate kinase 'fubulin Phosphogiyceromutase Ricin tropoelastin Tyrosine kinase Phospholipase A2 acid phosphatase Ubioquinone reductase Phospholipase C acid protease UPA
Phospholipase CG I Heavy meromyosin Uridine monophosphate Phospholipase D serine / threonine kinase kinase Phospho9ipase S Spectrin Vitamin K reductase Phosphoribonlutase Spermine synthase vvee-1 gene product Phosphoribosyl phosphate Squalene epoxidase Xanthine dehydrogenase transferase Squalene monooxygenase Xanthine oxidase pirri oncogene protein src oncogene protein Xylosyl transferase Plasminogen activator- Sterol rraethyltransferase yes oncogene protein inhibitor suc l p13 a-actin Porin Succinyl-CoA -synthetase a-rnannosidase pRB (retinoblastoma gene Superoxide dismutase a-rnelogenin product) Tartrate dehydrogenase a-tubufin pRb retinablastorrsa gene Thioesterase R-actin product Thioredoxin R-glucuronidase Properdin Thrombospondin R-glycerophosphatase Prostaglandin synthase Thromboxane-A2- R-ketoacyl-ACP-Protein kinase C synthetase reductase Purine nucleoside Thymidylate synthetase ~ ketoacyl-ACP-phosphory9ase T'ransacylase synthetase Pyruvate dehydrogenase Triose phosphate isomerase R-spectrin Pyruvate kinase Triose phosphate ~-tropornyosin raf oncogene protein dehyrogenase R tubulin A further particularly preferred group of intracellular receptors are the HMG proteins, such as are described for example in the International Patent Application PCT/EP96/00716, and in particular the HMGA proteins. As used herein the term HMGA proteins preferably denotes overall the following proteins: HMGA1, HMGAla, HMGAlb and HMGA2o The HMGA proteins have a modular structure and each comprise three DNA-binding domains, which are termed "AT
hooks" and are shown as DBD1 to DBD3 in Fig. 2, as well as a very acidic C-terminal region. It is obvious to the person skilled in the art that antagonists which bind to one of the "AT hooks" recognise not only the HMGA1 proteins and thus the two splice variants HMGAIA and HMGAIB (see Fig. 2), but also exhibit cross reactivity with similar DNA-binding molecules such as HMGA2o Apart from HMGA2, many further proteins also have sequences similar to the "AT hooks" and form in each case further receptors. Such proteins are listed inter alia in Table 3:
Table 3:
Column 1: Protein data bank - Access codes; Column 2: Protein designation Q9UKBO Human HMG-Protein-R
Q9UKY1 ZHX1_Human Zinc finger- and Homoeobox-Protein 1 P55198 AF17_HUMAN AF-17 Protein [MLLT6]
Q59F28 Human Trithorax Homologon (Fragment) Q6PJQ2 Human ZNF406 Protein (Fragment) Q75PJ9 Human ZFAT-1 Protein Q75PJ7 Human ZFAT-3 Protein Q75PJ6 Human TR-ZFAT Protein Q9ULG1 Human KIAA1259 Protein Q9NUK2 Human Hypothetical Protein FLJ11314 Q9NTG6 Human Hypothetical Protein DKFZp434B0616 Q8IXO1 SFR14_HUMAN Presumed Splice Factor Q9H5J8 Human Hypothetical Protein FLJ23363 Q619Y6 Human MGC5306 Protein Q81X01-2 Splice Isoform 2 of Q8IX01 Q8IX01-3 Splice Isoform 3 of Q8IX01 Q8IX01-4 Splice Isoform 4 of Q8IX01 Q15291 RBBP5_HUMAN Retinoblastoma-binding Protein 5 (RBBP-5) P51608 MECP2_HUMAN Methyl-CpG-binding Protein 2 Q6IPE2 Human FLJ12800 Protein Q6QHH9 Human Methyl-CpG-binding Protein 2, Isoform B
Q9H8H4 Human Hypothetical Protein FLJ13629 Q7Z384 Human Hypothetical Protein DKFZp686A24160 042043 ENK7_HUMAN HERV-K_1q23.3 Provirus P61569 ENK16_HUMAN HERV-K_10p14 Provirus Q86VM3 Human MYB binding Protein la [MYBBPIA]
Q9UNW3 Human Coat Protein RIC-2 Q9BWEO Human REPINI Protein (Hypothetical Protein ZNF464) Q9ULL5 Human KIAA1205 Protein Q9NZH2 Human Dhfr Oribeta-binding Protein RIP60 Q9NZI3 Human Linens epithelium-containing growth factor p52 Q9NY27 Human Regulatory Sub-Unit 2 of Proteinphosphatase-4 Q86U91 Human HMGA2/RAD51L1 Fusion protein 095368 Human Transcriptional Coactivator p52 Q9P015 Human HSPC145 (Mitochondrial Ribosome protein L15) Q5U071 Human HMG Protein 'box 2' Q9HOY1 Human Hypothetical Protein DKFZp564I206 Q6ZP45 Human Hypothetical Protein FLJ26517 P17096-2 Splice Isoform HMG-Y of P17096 [HMGA1]
Q9Y6XO SETBP_HUMAN SET-binding Protein (SEB) [SETBPI]
Q8TEK3 DOT1L_HUMAN Histone-Lysine N-Methyltransferase Q8TEK3-2 Splice Isoform 1 from Q8TEK3 [DOT1L]
Q03164 HRX_HUMAN Zinc finger-Protein HRX (ALL-1) Q86YP1 Human Transcription factor MLL UPN96240 Q86YN9 Human Transcription factor MLL UPN95022 Q03164-2 Splice Isoform 4P-18B from Q03164 [MLL]
P04920 B3A2_HUMAN Anion Exchanger Protein 2 Q59GF1 Human Anion Exchanger-2 type a-variant Q8TAG3 Human SLC4A2 Protein Q6P391 Human PSIP1 Protein 075475 Human Linens epithelium-containing growth factor p75 Q9UEY6 Human Anion exchanger-2 type a [SLC4A2]
Q9UEY5 Human Anion exchanger-2 type b2 [SLC4A2]
Q9UEY4 Human Anion exchanger-2 type b1 [SLC4A2]
Q9UER6 Human Transcriptional coactivator p75 000256 Human DFS70 P04920-2 Splice Isoform B1 of P04920 [SLC4A2]
Q9BTB1 Human Hypothetical Protein MGC10561 Q9UKB0 Human HMG Protein-R
043167 ZBT24_Ht7MAN Zinc finger- and BTB-domain-containing protein Q8N455 Human ZBTB24 Protein [ZBTB24]
Q5TED5 Human Zinc finger-Protein 450 [ZNF450]
Q96CKO Human Zinc finger-Protein 653 Q96AS7 Human Zinc finger-Protein 653 P51888 PRELP_HUMAN Prolargine Precursor Q5JPC9 Human Hypothetical Protein DKFZp667H216 Q6FHG6 Human PRELP-Potein Q6ZR44 Human Hypothetical Protein FLJ46672 Q8NEZ4 MLL3_HUMAN Myeloid/lymphoid-Leukaemia protein 3 Homologon Q96AC6 KIFC2_HUMAN Kinesine-like Protein KIFC2 Q9COH5 K1688_HUMAN Protein KIAA1688 P52926 HMGIC HUMAN HMG Protein I-C
Q9UKV3 ACINU_HUMAN Inductor of apoptotic Chromatin condensation Q59F82 Human C21orf2-Protein variant Q5VYT7 Human OTTHUMP00000021181 Q96M56 Human Hypothetical Protein FLJ32810 Q69YJ6 Human Hypothetical Protein DKFZp667N107 08NEY3 SPAT4_HUMAN Spermatogene-associated Protein 4 Q12809 KCNH2_HUMAN Potassium Potential-controlled Ion channel Sub-family Q8IYY4 Human protein similar to the DAZ-interacting protein 1[DZIPIL]
Q6ZN04 Human Hypothetical Protein FLJ16544 Q5SXN7 Human Serologically defined colon cancer antigen 3 Q8IVG2 Human KIAA2009 Protein (Fragment) [RKHD3]
Q75VX8 Human KIAA2038 Protein (Fragment) [KIAA2038]
Q12809-2 Splice Isoform 2 von Q12809 [KCNH2]
Against this background the present invention also relates to L-nucleic acids and in particular spiegelmers, which are directed against any of the target molecules mentioned in Tables 1 to 3.
Since the L-nucleic acid is used as an intracellularly active agent, in particular within a cell, in order to bind there to an intracellular receptor, intracellularly different forms of the interactions between the 10 intracellular receptor and its interaction partners can be influencedo Depending on the type of interaction partners of the intracellular receptor, the intracellular use of L-nucleic acids thus enables interactions of proteins, nucleic acids, lipids, carbohydrates, or combinations of 15 proteins, nucleic acids, lipids, carbohydrates with one another and between one another to be influencedo In connection with the use according to the invention of a L-nucleic acid, in particular a spiegelmer, as 20 intracellular agent and the method for binding an intracellular receptor, it should be noted that this preferably relates to an in vitro application and to an in vitro methodo 25 In connection with the use according to the invention of a L-nucleic acid, in particular a spiegelmer, for the production of a medicament for the treatment and/or prevention of a disease and/or for the production of a medicament for diagnostic purposes, the target molecule is 30 an intracellular target molecule. In this connection the intracellular target molecule is one that is causily or non-causily involved in the disease or illness to be prevented, treated or diagnosed, but in any case its binding to a L-nucleic acid that binds specifically thereto means that, in the case of a medicament, the disease is alleviated, prevented or cured, and/or in the case of a diagnostic agent the disease or a predisposition thereto can be established or diagnosed. As used herein the concept of diagnosis include an initial diagnosis as well as subsequent diagnoses, in particular diagnoses or investigations in order for example to follow or to determine the progression of the disease or the stages of the disease. It is within the scope of the invention that the target molecule is an intracellular receptor as described herein, in particular a transcription factor, an intracellular target molecule or an HMG protein. Within the scope of the present invention it is most particularly preferred if the target molecule is present intracellularly, i,ea within a cell, and the interaction having an influence on the disease and/or diagnosis takes place intracellularly between the L-nucleic acid and in particular the spiegelmer, and the target molecule, ioeo the receptor. It is also within the scope of the present invention if the target molecule is present outside a cell and the interaction between the L-nucleic acid and in particular the spiegelmer, and the target molecule, i>ea the receptor, takes place extracellularlyo The indications for use of the medicament produced using an L-nucleic acid, in which the nucleic acid is directed against an intracellular target molecule, follow for the person skilled in the art from the involvement of the intracellular target molecule in the respective pathogenicity mechanism on which the indication is based.
Thus, it is known for example for HMGA proteins that these are associated with carcinomas (inter alia of the breast, lungs, skin, thyroid) as well as leukaemias and lymphomas and other malignant tumours, such as inter alia sarcomas (rhabdomyosarcoma, osteosarcoma), Also, HMGA proteins are expressed in many types of mesenchymal tumours, including inter alia hamartomas (breast and lungs), fatty tissue tumours (lipomas), pleomorphic adenomas of the salivary glands, uterine leiomyomas, angiomyxomas, fibroadenomas of the breast, polyps of the endometrium and atherosclerotic plaques. HMGA is an interesting therapeutic target.
Blockade of HMGA could be a suitable starting point for controlling cancer and preventing its metastatic spread.
As described in detail herein, L-nucleic acids directed against HMGA proteins are also suitable for the diagnosis and/or treatment of virus diseases and arteriosclerosis on account of the involvement of HMGA proteins in the regulation of the transcription of a large number of viral genes or the marked expression of HMGA and in particular HMGA1 in the tissues affected by arteriosclerosis, which is associated with neointimal, vascular smooth muscle cells, macrophages and new blood vessels.
Although - as has been surprisingly found by the present inventors - nucleic acids, preferably L-nucleic acids and particularly spiegelmers, are able as such to penetrate a phospholipid double membrane such as a cytoplasmic membrane and then to be intracellularly functional in the sense of the specific interaction with the intracellular receptor, the effectiveness of the infiltration of the L-nucleic acid can be influenced and in particular enhanced by the use of various techniques. These techniques include the use of chemical compounds or molecules as well as the use of physical measures. Irrespective of the type, these techniques are herein generally referred to as delivery vehicles. It is within the scope of the present invention that the inventors have likewise established that aptamers too exhibit this property, and like the spiegelmers can similarly be used involved together with the composition according to the invention for basically the same purposes, applications and uses.
In the use of chemical compounds and molecules, a further distinction is whether the nucleic acid needs to be modified or not for the delivery. A modification for the purposes of using a delivery vehicle is generally not necessary if the delivery vehicle is or comprises a vesicle, such as for example in the case of liposomes, polypeptide vehicles, cyclodextrins, dendrimers, nanoparticles and microparticles, and also polyethyleneimine. A modification for the purposes of using a delivery vehicle is on the other hand normally necessary if the delivery vehicle uses receptor-mediated endocytosis, fusogenic peptides, signal peptides or lipophilic conjugates. The group of physical techniques includes in particular electroporation and iontophoresis.
It will be recognised that further techniques for transporting a compound through a phospholipid double membrane such as a cytoplasmic membrane are known to the person skilled in the art in this field, which in principle are also suitable for the transfer of a functional nucleic acid, such as for example an aptamer and/or a spiegelmero The individual delivery vehicles which can be used within the scope of the various aspects of the present invention will be described in more detail hereinafter.
Liposomes consist of artificial cationic lipids such as 1V-[ 1- ( 2, 3-dioleoyloxy) propyl ]-1V, N, N-trimethylammonium chloride (DOTMA) and N- [1- (2, 3-dioleoyloxy) propyl] -N,N,N-trimethylammonium sulfate (DOTAP), in which the cationic groups interact with the negatively charged nucleic acids and neutralise their anionic charge. The transport takes place via endocytosis (PNAS, 93:11493-11498, 1996).
However, cationic liposomes are cytotoxic, especially in higher concentrations, which restricts their use in v.a.tro and in vivo (Biochem Biophys Res Commun, 197e818, 1993;
Biochem Biophys Res Commun, 1372:55-68, 1998), On the other hand the amphiphilic pyridinium-based lipid SAINT-2 is a non-toxic formulation (Nucleic Acids Res, 2902079-2087, 2001)a Also, pH-sensitive liposomes are a possible alternative, which consist of amphiphatic molecules such as cholesteryl hemisuccinate (CHEMS) and dioleyl phosphatidyl ethanolamine (DOPE) (J Pharmacol Exp Ther, 29701129-1136, 2001). Widely differing formulations of liposomes can be found in the review articles by Dass and Torchili (Drug Delivery, 9:169-180, 2002; Nat Rev Drug Disc, 4:145-160, 2005).
With receptor-mediated endocytosis (RME) transport mechanisms which are already present in the cell membrane are utilisedo For this purpose the nucleic acid is coupled for example via a poly-L-lysine (PPL) linker 5 covalently to a transporter protein ("carrier" protein)o The choice of transporter protein depends in this connection on the ability to bind to specific receptors of the cell membrane and to accumulate in the cell by endocytosiso A cell-specific transport can thus be 10 realised. For example, an antisense phosphorothioate directed against c-myc could be introduced into M-14 human melanoma cells (Anticancer Res, 17:29-35, 1997). However, an effective transport by means of RME depends in this case not only on the affinity of the receptor for the 15 ligand, but also on the limitation of the selected receptor as regards the cells - especially in vivoa Furthermore the selected ligand must be inactive or have an enhancing effect as regards the therapeutic result, in order to avoid a possible toxicity of the transport 20 vehicle. Thus, the selection and the ubiquitous propagation of the selected receptor in vivo is decisive for a successful RME-based transport. Moreover, a sequestration of nucleic acids in endosomal compartments has been observed in RME-based transport, which would 25 appear to make this method not very promising for an intracellular transport or an intracellular release or delivery. Most important of all, the coupling between the receptor and nucleic acid must be chosen so that the function of one or other is not reduced (J Pharmaceutical 30 Science, 92 (8)01559-1573, 2003).
Fusogenic peptides have been used to enable peptide-oligonucleotide conjugates to fuse with the cell membrane and thus effect the transport in the cell (Bioconjug Chem, 9e 466-475, 1998; Bioconjug Chem, 6:43-53, 1995; Nucleic Acids Research, 25:2730-2736, 1997)0 The selected import of nuclear proteins from the cytosol into the nucleus is mediated by short peptide sequences, which are termed nuclear localisation signals (NLS)o Thus, various NLS peptide derivatives can be used in order to transport nucleic acids into the nucleus (Bioconjug Chem, 10:1005-1012, 1999; Bioconjug Chem, 10:598-606, 1999; Bioconjug Chem, 6:101-108, 1995). In addition there are also so-called signal import peptides (IP), which can promote the cellular uptake of nucleic acids and could be derived for example from Kaposi's fibroblast growth factor (K-FGF) (Adv Drug Deliv Rev, 44:35-49, 2000)0 Vesicles similar to viral capsids can be formed by blocks of polypeptides, which can serve as possible transport vehicles for an intracellular transport (Nat Materials, 3(4)0244-8, 2004).
The hydrophilic character of oligonucleotides and the anionic phosphodiester backbone reduce the cellular permeationo Lipophilic conjugates are therefore one possible way of increasing the ability of oligonucleotides to bind to lipoproteins and thereby improve intracellular delivery. The conjugate that has been most thoroughly investigated is cholesterol (Antisense and Nucleic Acid Drug Development, 12:103-128, 2002).
Cyclodextrins are cyclic oligosaccharides, which have a central hydrophobic cavity and multiple hydroxyl groups on the outer surface. Cyclodextrins have therefore already been used for the transport of anti-sense oligonucleotides in human T cell lines (Antisense Res Dev, 5:185-192, 1995) and have also been used in vivo for intracellular transport and for intracellular release or delivery of immunogenic CpG sequences (Biochem Pharmacol, 52:1537-1544, 1996), A wide variety of formulations of cyclodextrins are given in the review article by Davis und Brewster (Nature Reviews Drug Discovery 3:1023-1035, 2004) 0 Dendrimers are highly branched macromolecules, which are composed of repetitive units of, typically, polyamides>
The molecules carry functional groups such as primary amino groups on their surface, which interact with other molecules by electrostatic interaction. A complex structure formation thus takes place rapidly and in a highly reproducible manner, which leads to complexes of low cytoxicity (Nucleic Acids Research, 28:4225-4231, 2000; Clin Cancer Res, 7:3606-3612, 2001).
Cyanacrylate nanoparticles have been tested since the beginning of the 1990s for the release or delivery of oligonucleotides. The interaction of oligonucleotides with the nanoparticles takes place through ion pairs of the anionic charge of the oligonucleotides with various hydrophobic cations, principally with charged nanoparticles. Polyisohexyl cyanoacrylate (PIHCA), polyisobutyl cyanoacrylate (PIBCA) or polyhexyl cyanoacrylate (PHCA) are commonly used for the formation of nanoparticles, although a large number of lipophilic cation-oligonucleotide pairs have also been tested (Pharm Resõ 101370-1378, 1994; PNAS, 91:10460-10464, 1994; Pharm Res, 90441-449, 1992). Also, nanoparticles have already been employed for in vivo use (Biochem Biophys Res Commun, 279:401-406, 2000; Pharm Res, 13:38-43, 1996).
Microparticles or so-called microspheres are typically formed from biodegradable polymers such as poly (d,l-lactide-co-glycolides [P(LA-GA)] and are used for the delayed release of oligonucleotides (J Pharm Sci, 91a790-799; 2000; J Controlled Release, 69:197-207, 2000; J Drug Traget, 5:291-302, 1998).
Electroporation is a transport technology, which uses a strong electric field in order to destabilise the lipid double membrane, and thereby permeabilise the cell membrane and thus effect a transport of the substance to be administered, which can also be present in ionised form, into the cell (iontophoresis)e Electroporation has already been successfully used in order to effect transdermal transport of oligonucleotides ex vivo as well as in vivo (Int J Pharm, 184:147-156, 1999; J Drug Traget, 5:275-289, 1998; Pharm Res, 15:1596-1602, 1998; Int J
Cancer, 85:260-266, 2000; Biochem Biophys Res Commun, 212:286-292, 1995; Blood, 88:731-741, 1996)e The uptake of "naked" oligonucleotides into cells can be improved in vitro and ex vivo by the use of high pressure.
The need for closed systems in order to use this technology means that it can only be used for ex vivo applications (PNAS, 96:6411-6416, 1999; Hum Gene Ther, 10:2355-2664, 1999)0 Also, the use of shockwaves, acoustic high pressure pulses, effects the transport of oligonucleotides into cells (J Mol Med, 790306-313, 2001; Cancer Res, 58:219-221, 1998), Ultrasound is an acoustic technology comparable to shockwaves, but employs higher frequencies (MHz instead of Hz) and shorter application times (from seconds to minutes), and has already been used in a supporting role in gene therapy techniques (Hum Gene Ther, 701339-1346, 1996; Invest Radiol, 32:723-727, 1997;
Ultrasound Med Bio, 25:1451-1457, 1999), In a further aspect of the present invention a new delivery vehicle is provided, which is suitable in particular for the transport of functional nucleic acids such as aptamers, preferably functional L-nucleic acids, and most particularly preferably spiegelmerso The delivery vehicle is in this case a micelle-like or liposome-like structure based on polyethyleneimine.
Without wishing to be too specific in the following description, the present inventors start from the assumption that the nucleic acid is present embedded or contained in the micelle-like or liposome-like structure>
Polyethyleneimine can in principle be present and also used as linear or branched polyethyleneimine, polyethyleneimine in the branched form being particularly preferredo Moreover, polyethyleneimine can exist and can also be used as high molecular weight or low molecular weight polyethyleneimine. Preferably high molecular weight polyethyleneimine has a molecular weight of about 800 kDa and low molecular weight polyethyleneimine has a 5 molecular weight of about 3 kDa. Within the scope of the present invention a polyethyleneimine with a mean molecular weight of about 25 kDa is preferred, a branched polyethyleneimine with a molecular weight of about 25 kDa being particularly preferred.
Although it is not essential for an effective implementation, it is nevertheless preferred if in the delivery vehicle according to the invention the nucleic acid itself to be delivered also carries a modification.
In this connection it is preferred if the modification is selected from the group comprising PEG residues. It is furthermore preferred if the PEG residue has a molecular weight of about 1000 to 10000 Da, preferably about 1200 to 5000 Da, more preferably about 1500 to 2500 Da and most particularly preferably about 2000 Da.
When mixing the nucleic acid with the delivery vehicle to produce a composition according to the invention, the ratio of the total number of nitrogen groups of the polyethyleneimine to the total number of phosphate groups of the nucleic acid to be delivered via or packaged with the delivery vehicle is adjusted to about 1 to 20, preferably about 1.5 to 10, more preferably 2 to 5, and most particularly preferably about 2 to 3.
The delivery vehicle according to the invention thus enables the mechanism of intracellular transport of nucleic acids via condensation or packing with charged particles or reagents and associated change in the charge of the overall complex, to be used also for functional nucleic acids such as aptamers, and in particular L-nucleic acids such as spiegelmers> This complex is readily taken up through endocytosis and thereby passes into the cytosol of the cell. A disadvantage of this method is the stability of the DNA/RNA and the release of the nucleic acid from the endosomal compartment. In the cytosol of the cell a lysosome is rapidly formed from the tightly constricted endosome due to the introduction of proteases or nucleases and by protonation of the compartment. There nucleases break down the nucleic acids. This does not apply however to spiegelmers, since due to their unnatural configuration these are nuclease-stable. Also, nucleic acids are not stable in the acidic environment of the lysosomeo However, this is more true of nucleic acids synthesised from DNA, and less true of nucleic acid from RNA, The whole complex is rapidly transported out of the cell again by exocytosis and breakdown in the Golgi apparatus, and accordingly only a few nucleic acids pass into the cell. One of the challenges which a suitable transfection system has to overcome is thus the stabilisation as well as the release of the nucleic acid from the endosomes into the cytosol, As regards stability, RNA spiegelmers have ideal properties for a transfection of eukaryotic cells, since being enantiomers they are not split by enzymes.
The use according to the invention of L-nucleic acids and in particular in connection with the composition according to the invention is important specifically for this class of active substances, since their action mechanism is based on a stoichiometric approach and not on a catalytic approach, in which the intracellular release of just a few molecules is already sufficient to achieve the desired effect. To this extent the present invention satisfies a need that was not hitherto met by the techniques of the prior art.
The transfection system according to the invention that is provided and elaborated by the delivery vehicles according to the invention is based on the formation of micelles from nucleic acids and branched polyethyleneimine (PEI).
The phosphodiester backbone of the nucleic acids interacts with the free nitrogen positions of the PEI and forms small micelles through cross-linking, which have a positive charge on account of the PEI. These micelles are readily taken up as endosomes from a cell by constriction of the plasma membrane. The PEI now buffers inflowing protons, as a result of which many chloride ions in the interior of the endosome lead to a swelling of the compartment on account of the osmotic pressure. This effect of PEI is described in the literature as the proton sponge effect, and ultimately leads to the rupture of the endosome and the release of the spiegelmers into the cytosol. (Pharm Res, 22 (3)> 373-80, 2005; Eur J Cell Biol 83 (3)0 97-111, 2004; Gene Ther 9(24)e1700-7, 2002).
It is within the scope of the present invention to apply the composition according to the invention as an aerosol.
In addition spiegelmers can be derivatised with signal peptides for intracellular as well as intranuclear delivery, and also for organ-specific delivery. A
coupling of signal peptides directly to the polyethyleneimine can be used for a targeted localisation in organs or within the cell.
In another further aspect the present invention relates to L-nucleic acids, in particular spiegelmers and more preferably RNA spiegelmers, which are directed against HMGA proteins. The spiegelmers disclosed herein directed against HMGA proteins are in particular examples of the knowledge, likewise forming the basis of the present invention, that L-nucleic acids and in particular spiegelmers are able to overcome a phospholipid double membrane or a cytoplasmic membrane of a cell and bind intracellularly with the intracellular receptor, for the specific binding to which they have been selected. As regards the configuration of the HMGA proteins and the L-nucleic acids directed against the latter, the comments made herein regarding the intracellular use of L-nucleic acids also apply in connection with the present aspect of the invention (and vice-versa), and is referred to again at this point in order to avoid unnecessary repetitions.
The HMG (high mobility group) family of DNA-binding phosphoproteins are present as non-histone components of chromatin throughout mammalian cells (Grosschedl et aIe 1994) The basic HMG proteins are sub-divided into three different families - HMGB (formerly HMG-1/-2), HMGN
(formerly HMG-14/-17), and the HMGA family (formerly HMG-I/Y/C), Each HMG family has its characteristic functional sequence motif: the "HMG box" (HMGB family), the "nucleosomal binding domain" (HMGN family), and the "AT
hook" (HMGA family).
According to the current state of knowledge the HMGA
family comprises two genes, HMGA1 and HMGA2o Three different proteins can be expressed by alternative splicing by HMGA1, (HMGAla [formerly: HMG-I], HMGAlb [formerly: HMG-Y], HMGAlc [formerly: HMG-I/R]), whereas only one protein (HMGA2 [formerly: HMGI-C]), can be expressed by HMGA2o HMGAla, HMGAlb and HMGA2 are polypeptides of approximately 100 amino acid length and have a modular sequence organisation: they possess three strongly basic regions ("AT hook"), which bind the narrow small channels of double-stranded AT-rich DNA (Reeves &
Nissen 1990), The C-terminus on the other hand contains many acidic amino acids. The proteins do not have a stable secondary structure when free in solution, and only adopt a defined conformation when they are present in the complex with DNA or other proteins (Huth et al 1997). HMGA
proteins belong to the most strongly modified proteins in the mammalian cell nucleus and are phosphorylated, acetylated and methylated (Reeves & Beckerbauer 2001)0 The HMGA proteins per se do not have any transcriptional activity, but being so-called architectonic transcription factors they organise through their protein-protein and protein-DNA interactions the formation of the nucleoprotein-DNA transcription complex (Wolffe 1994).
They thus exert a regulatory activating or inhibitory influence on the expression of a large number of genes.
5 The most prominent example of a positive regulation is the involvement of HMGA1 in the regulation of IFN-P (Thanos &
Maniatis, 1992). Thus, for example in the case of the IFN-R promoter HMGAlb stimulates the binding of NF-KB and ATF-2 to the DNA double helix and at the same time alters 10 the DNA structure in such a way that NF-KB and ATF-2 can interact with one another and presumably also with the rest of the transcription machinery (Thanos & Maniatis 1992, Du et al 1993)< A further transcription-activating effect in connection with arteriosclerotic pathogenesis is 15 the CD44 gene regulation induced by HMGA1 (Foster et al 1998). CD44 is a cell surface glycoprotein and is involved in the migration and proliferation of smooth muscle cells after endothelial damage (Jain et al 1996, Cuff et al 2001). The transcriptional regulation of CD44 is induced 20 by the binding of c-Fos and c-Jun to the AP-1 binding site in the CD44 promotor and is strengthened by the binding of HMGA1. Investigations in rats has shown that due to CD44 over-expression, there is an intensified recruitment of smooth muscle cells, which has a direct influence on the 25 formation of arteriosclerotic lesions (Pellacani et al 1999; Foster et al. 1998; 2000), Investigations on the expression of the HMGA1 gene localised in the chromosomal band 6p2l.3 and of the HMGA2 30 gene localised in the region l2q14-15 showed that these are mainly active in processes of cell differentiation.
Accordingly, a strong expression of these genes can be found during embryo development and in undifferentiated cells (Chiappetta et al 1996) as well as in growth factor-stimulating cells (Friedman et al 1993; Johnson et al 1990; Ogram et al 1995; Holth et al 1997). In adult, differentiated tissue, HMGA1 is strongly expressed only in the retina, while HMGA2 is not found at all in the other tissues and HMGA1 is found only in very low concentrations (Bussemakers et al 1991; Chiappetta et al 1996; Rogalla et al 1996; Zhou et al 1995; Chau et al 2000). A reactivated expression of HMGA proteins in differentiated normal tissue is at the same time associated with the growth and differentiation of adipocytes (Zhou et al 1995; Anand &
Chada 2000; Melillo et al 2001), the proliferation of smooth muscle cells in the blood vessels after vascular damage (Chin et al 1999), in the immune response in inflammatory reactions (Pellacani et al 1999), as well as in apoptotic processes (Diana et al 2001; Sgarra et al 2003). The amount of HMGA1 varies in this connection depending on the proliferation rate of the cells (Johnson et al 1990).
During the course of embryo development the HMGA1 expression is concentrated on specific organs of ectodermal, mesodermal or endodermal origin, whereas HMGA2 is restricted to mesenchymal tissue. Up to now no information exists concerning the phenotype of HMGA1 knockout mice, possibly because the lack of this factor has damaged embryo development too severely. HMGA2 knockout mice on the other hand exhibit dwarfism and have particularly little fatty tissue (Zhou et al 1995) and furthermore are resistant to diet-induced obesity (Anand &
Chada 2000)0 Finally, HMGA2 and HMGAlb expression is not detectable in the fatty tissue of normal mice, but is dramatically increased in the fat of fatty or diabetic mice (Chada et al, 2004), which points to a connection between adiposity/obesity and HMGA expression.
Over-expression of HMGA1 influences in particular (Reeves et al 2001)0 o Cell cycle and growth regulators such as cdc25A, o Intermediary filament markers such as cytokeratin, type 1 a Apoptosis regulators such as TRAR15 o Oncogenes and tumour suppressor genes such as MET
o Genes for DNA repair and recombination such as DNase x o Cell fate and development regulators such as frizzled-5 o Receptors such as FGFR1 o Cell adhesions, motility and invasion genes such as collagen type 1 o Angiogenesis regulators such as FGFR2 Invasion regulators such as MMP-16 o Small GTPases of the Rho family and their regulators such as RhoC
o cell-cell interaction genes such as cadherin 12 o Growth factors and cytokines such as IL-11 Abnormal regulation of HMGA1 could therefore lead to general alterations of gene expression and thereby contribute significantly to the formation of transformed and/or metastatic phenotypes.
HMGA protein appear to play different roles in mesenchymal and epithelial tumourso in malignant epithelial tumours HMGA expression is associated rather with later stages of carcinogenesis, whereas benign tumours - more often rarely converting mesenchymal tumours - already express HMGA in early hyperplasiao This points to the fact that HMGA
proteins in tissues of different embryonic origin fulfil different functions, from which also directly follows the corresponding uses of the L-nucleic acids according to the invention in the diagnosis and/or treatment of corresponding diseases, as is also illustrated in more detail hereinafter.
The expression of HMGA1 in various human and animal neoplasms was investigated in animal models. The role of HMGA1 was demonstrated in animal models of tumourigenesis (Leman et al 2003; Ram et al 1993) as well as neoplastic progression (Bussemakers et al 1991; Nestl et al 2001; Ram et al 1993).
Raised expression of the HMGA1 gene has been demonstrated in the following carcinomas o Prostate (Bussemaker et al 1991; Tamimi et al 1996, Leman et al 2003; Nestl et al 2001) o Pancreas (Nestl et al 2001; Abe et al 2000, 2002;
Tarbe et al 2001) a Thyroid (Chiappetta et al 1998, 1995) o Cervix (Bandiera et al 1998) o Stomach (Xiang et al 1997) o Breast (Holth et al 1997; Baldassarre et al 2003;
Reeves et al 2001; Nestl et al 2001; Ram et al 1993;
Dolde et al 2002) o Colon/Rectum (Fedele et al 1996; Abe et al 1999; Kim et al 1999; Chiapetta et al 2001) o Ovaries (Masciullo et al 2003) and furthermore in o Neuroblastoma (Giannini et al 2000; 1999) as well as o Lymphoma (Wood et al 2000a; b).
The precise reason for the increased expression and the role of the HMGA1 gene in the pathogenesis of the tumour and the process of metastasis has still not been fully clarified. Various studies indicate however that the strength of the HMGA1 expression by the respective tumour as a prognostic marker correlates with its metastasing potential and thus represents a characteristic feature of a malignant transformed cell (Giancotti et al 1987)0 Further HMGA1-associated - in this case benign, mesenchymal tumours - are characterised by chromosomal changes in the chromosomal HMGA1 region 6p21o3, Such aberrations have up to now been described inter alia in a Uterine leiomyoma (Mark et al 1988; Ozisik et al 1993) o Lipoma (Sreekantaiah et al 1990) ~ Endometrial polyps (Fletcher et al 1992; Dal Cin et al 5 1995) as well as o chondroid hamartoma of the lungs (Fletcher et al 1991;
Johansson et al 1992, 1993), Aberrations in the genetic mechanisms which control growth 10 and proliferation are the primary cause of carcinogenesis.
The expression of HMGA proteins is strongly associated with tumour development, as has been shown in a number of articles and papers (Giancotti et al. 1987, 1989, 1993).
Thus, a significant HMGA2 expression was found in 15 chemically or virally caused tumours as well as in spontaneously occurring tumours, whereas this protein could not be detected in non-transformed cells or healthy tissue (Giancotti et a1. 1989) . In accord with this, in the case of cells infected with oncogenic retroviruses in 20 which the synthesis of HMGA2 expression had been specifically blocked, various phenotype markers for transformation were absent (Berlingieri et al, 1995).
The key role of HMGA proteins in normal as well as 25 pathological growth has been elucidated in mouse modelse HMGA2 knockout mice exhibit stunted growth, .i.e. the animals are ca. 60% smaller than wild type mice. These dwarf mice however have a high resistance to chemically induced skin tumours, In the last few years structural aberrations of the chromosome region 12q14-15 involving the HMGA2 gene have been found with the aid of cytogenetic investigations for a whole number of benign tumours of mesenchymal origin, these being the largest group of harmless neoplasias in man. Despite a large number of aberrations (Schoenmakers et al 1995; Kottickal et al 1998; Klotzbuchel et al 1999) the altered forms nevertheless always exhibit a common feature: they retain all three DNA-binding domains, but at the same time lose the acidic C-terminal domain as well as, at the RNA level, the information of the 3' UTR.
Such changes have already been found for many (mostly benign) mesenchymal HMGA-associated tumours:
o Uterine leiomyomas, the most common abdominal tumours in women and the reason for more than 200,000 hysterectomies per year in the USA (Heim et al 1988;
Turc-Carel et al 1986; Vanni et al 1988) o Lipomas (Heim et al 1988; Turc-Carel et al 1986;
Mandahl et al 1987; Sreekantaiah et al 1991; Belge et al 1992) o Endometrial polyps (Walter et al 1989; Vanni et al 1993; Dal Cin et al 1995) = Chondroid hamartomas of the lungs (Fletcher et al 1991, 1995; Dal Cin et al 1993) = Pleomorphic adenomas of the salivary glands (Mark et al 1980, 1986; Bullerdiek et al 1987) o Haemangiopericytomas (Mandahl et a1 1993) o Chondromatous tumours (Mandahl et al 1989; Bridge et al 1992) o Benign tumours of the breast (Birdsal et al 1992;
Rohen et al 1995; Staats et al 1996) o Aggressive angiomyxomas (Kazmierczak et al 1995) o Diffuse astrocytomas o Osteoclastomas (Nuguera et al 1989) The main cause of mortality and morbidity in cancer patients is the metastatic spread of the primary neoplasm in the body. Metastasis is not a simple process, since a successful colonisation of distant organs by disseminated neoplastic cells has to pass through many stages.
Neoplastic cells have to be released from the primary neoplasm, enter the bloodstream, extravasate to distant sites, and finally proliferate again in the parenchyma of the corresponding organ. Many genes which express proteins such as proteases, adhesion molecules, motility factors and angiogenic factors are involved in the various stages of this highly complex, metastatic cascade.
Which of these genes is ultimately decisive as regards metastisis is not known, The HMGA1 gene, being one of the most important factors controlling this process, is however a likely candidate. The gene products of HMGA1 influence the transcription of many genes that are important for successful metastasis. For example, it has already been shown that other metastasis-associated genes are themselves expressed at a reduced level in suppression of HMGA1 expression(Battista 1998; Vallone 1997).
HMGA1 is therefore an important therapeutic target molecule. The blockade of HMGA1 is thus in principle suitable for controlling the cancer and preventing its metastatic spread (Evans 2004; Sgarra 2004)e Thus for example, by using antisense RNAs directed against HMGA
transcripts, cell proliferation in cancer cells has been reduced in vitro or the cells have even undergone apoptosis (Masciullo 2003; Scala 2000; Chau 2003)o It has been shown in animal models that the growth of various pancreatic cancer xenografts is dramatically reduced by gene therapy (adoenoviral expression of antisense RNAs directed against HMGA transcripts) (Trapasso et al 2004)e HMGA1 could furthermore be used as a prognostic diagnostic marker in order to determine which patients would benefit from an aggressive cancer treatment. There is a close correlation between the degree of the malignant transformation and the amount of expressed HMGA1. This can in turn be correlated with a poor prognosis in many types of human cancer, such as prostate cancer (Tamimi 1996; Bussemakers 1991) and colorectal carcinoma (Abe 1999) and neuroblastoma (Giannini 2000)a HMGA proteins are used by many viruses as well as by control factors provided by the host cell for the expression of viral genes or as co-factors, inter alia by o Human papovavirus JC (Leger et al 1995) o Epstein-Barr virus (Schaefer et al 1997) o Herpes simplex virus (Panagiotidis 1999 ; French et al 1996) a HIV-1 virus (Henderson et al 2000).
In particular HMGA proteins are involved in the regulation of the transcription of a large number of viral genes in a host cell. Examples of this are the regulation of the expression of the early and late expressed genes of the human papovavirus JC (Leger et ala 1995), regulation of the EBNA1 (Epstein-Barr virus nuclear antigen 1) gene of the Epstein-Bar virus (EBV), which is jointly responsible for controlling viral latency (Schaefer et al, 1997), regulation of the IE-3 (immediate-early) gene of the Herpes simplex Virus-1 (HSV-1), which codes the prematurely expressed protein ICP4 (Panagiotidis et al, 1999), regulation of the promoter 2, active during the latency phase, of HSV-1 (French et a1, 1996) and regulation of the LTR (long terminal repeats) promoter of the humane HIV-1 virus (Henderson et al 2000).
The requisition of HMGA by the host cell in the context of viral diseases is not only restricted to viral gene regulation, HMGA1 also appears to play a decisive role as architectonic co-factor in the integration of the viral DNA of the HIV-1 virus, of the Moloney murine leukaemia virus (MoMuLv) and sarcoma bird flu virus (ASV) into the human genome, and therefore appears to be an interesting therapeutic approach in antiviral treatment (Van Maele et al. 2006, Li et al 1998, Hindmarsh et a1. 1999).
Inhibitors of HMGA proteins are therefore also suitable for the treatment and diagnosis of virus infections (Reeves & Beckerbauer 2002).
As a result of the previously demonstrated involvement of HMGA proteins in various diseases and their suitability as diagnostic markers, L-nucleic acids and in particular 5 spiegelmers directed against these proteins can be used for the prevention, treatment and diagnosis of the above diseasesa Particularly preferred spiegelmers are in this connection the spiegelmers described herein. In this connection it is recognised by those skilled in the art 10 that although the individual spiegelmers have been developed for a specific HMGA protein, as a result of the domain approach illustrated in Example 2 these also allow a cross-reactivity with other HMGA proteins, which can be seen from the alignment illustrated in Fig. 2.
Furthermore, it is recognised by those skilled in the art in this field that the nucleic acids according to the invention contain a number of structural motifs, which define a class of spiegelmers that bind as intracellular receptors to HMGA proteins. The various structural motifs are illustrated in more detail in Example 1, The nucleic acids according to the invention comprise in a preferred embodiment also those nucleic acids which are substantially homologous to the sequences specifically disclosed herein. The term "substantially homologous"
should preferably be understood in this connection to mean that the homology is at least 75%, preferably 85%, more preferably 90% and most preferably more than 95, 96, 97, 98 or 99%.
The term nucleic acids according to the invention or nucleic acids according to the present invention should furthermore be understood to include also those nucleic acids which comprises nucleic acid sequences such as are described herein, or parts thereof, preferably to the extent that the nucleic acids or the said parts thereof are involved in the binding to HMGA proteins. Such a nucleic acid can be derived from those disclosed herein, for example by shortening or truncation. A shortening can involve either one or both ends of the nucleic acids, as are disclosed herein. A shortening can also involve the inner sequence of nucleotides, i.e. can involve nucleotide(s) between the 5' and the 3' terminal nucleotides. Furthermore the term shortening should also be understood as referring to the deletion of as few as one individual nucleotide from the sequence of the nucleic acids disclosed herein. Shortening can also involve more than one region of the nucleic acid(s) according to the invention, in which connection each of these regions may be as small as one nucleotide long.
The nucleic acids according to the present invention may furthermore be either D-nucleic acids or L-nucleic acids.
Preferably the nucleic acids according to the invention are L-nucleic acids. In addition it is possible that one or more parts of the nucleic acid is/are present as D-nucleic acids, or that at least one or more parts of the nucleic acids is/are L-nucleic acids. The term "part" of the nucleic acids is understood to denote as little as one nucleotide. Such nucleic acids are generally referred to herein as D-nucleic acids or L-nucleic acids.
Accordingly, in a preferred embodiment the nucleic acids according to the present invention consist of L-nucleotides and include at least one D-nucleotidea Such a D-nucleotide is preferably fixed to a part that is different from the region or regions that define the nucleic acids according to the present invention, and is preferably fixed to those parts thereof which are involved in an interaction with other parts of the nucleic acids.
Preferably such a D-nucleotide is fixed to the end of each region or to each nucleic acid according to the present invention. In a preferred embodiment such D-nucleotides can act as a spacer or a linker, which preferably binds modifications such as PEG and HES to the nucleic acids according to the present invention.
Within the scope of the present invention, in one embodiment the nucleic acids according to the invention also include those acids which are part of a longer nucleic acid, wherein these longer nucleic acids can include several parts, at least one part being a nucleic acid according to the present invention or a part thereof.
The other part or the other parts of these longer nucleic acids can either be a D-nucleic acid or a L-nucleic acid.
Any combination can be used in conjunction with the present invention and for the purposes and uses such as have been described herein for the nucleic acids according to the invention. This other part or these other parts of the longer nucleic acid can have a function that is different from the binding function, and in particular from the binding to HMGA protein. A possible function is to allow an interaction with other molecules, eego for the purposes of immobilisation, cross-linking, detection, amplification, modification or increasing the molecular weight.
In particular in this connection L-nucleic acids as used herein are nucleic acids which consist of L-nucleotides, and preferably consist completely of L-nucleotidese Accordingly, in particular D-nucleic acids as used herein are nucleic acids which consist of D-nucleotides, and preferably consist completely of D-nucleotideso Irrespective of whether the nucleic acid according to the invention consists of D-nucleotides, L-nucleotides or a combination of the two, the combination being for example a random combination or a defined sequence of regions which consist of at least one L-nucleotide and at least one D-nucleic acid, the nucleic acid can consist of one or more deoxyribonucleotides, ribonucleotides and combinations thereof, In a further aspect the present invention relates to a pharmaceutical composition which consists of at least one of the nucleic acids according to the invention in combination with one or more other nucleic acids, in which the other nucleic acid(s) preferably binds to target molecules other than HMGA protein or exerts a function different to that of the nucleic acids according to the invention, The construction of the nucleic acids according to the invention as L-nucleic acids is advantageous for several reasons. L-nucleic acids are enantiomers of naturally occurring nucleic acids. D-nucleic acids are however not very stable in aqueous solutions and in particular in biological systems and in biological samples, on account of the extensive presence of nucleaseso Naturally occurring nucleases, in particular nucleases from animal cells, are not able to break down L-nucleic acids. As a result of this the biological half-life of the L-nucleic acid in such a system, including the human and animal body, is significantly increasedo On account of the lack of degradability of L-nucleic acids no nuclease breakdown products are produced and thus no resultant side effects are observed. This aspect in fact demarcates L-nucleic acids from all other compounds that are used in the treatment of diseases and/or disorders and include the presence of HMGA or its causal involvemento L-nucleic acids that bind specifically to a target molecule through a mechanism different from the Watson-Crick base pairing, or aptamers which consist partly or completely of L-nucleic acids, in particular those parts of the aptamer that are involved in the binding of the aptamer to the target molecule, are termed spiegelmerse It is also within the scope of the present invention for the nucleic acids according to the invention to be in the form of single-strand or double-strand nucleic acids, regardless of whether they are present as D-nucleic acids, L-nucleic acids or D-L-nucleic acids, and whether they are DNA or RNA. Typically the nucleic acids according to the invention are single-strand nucleic acids, which on account of the primary sequence contain defined secondary structures and can therefore also form tertiary structures. The nucleic acids according to the invention may however also be double-stranded, in the sense that two strands which are complementary or partly complementary to one another are hybridised with one another. This imparts stability to the nucleic acids, which becomes important particularly if the nucleic acid exists in the naturally occurring D-form instead of the L-forzn.
The nucleic acids according to the invention can be modified. Such modifications can involve individual nucleotides of the nucleic acid and are well-known in the prior art. Examples of such a modification are described inter alia in Venkatesan N. et al. (2003) Curr Med Chem.
Oct;10(19)<1973-91; Kusser, W.(2000) J Biotechnol, 74: 27-38; Aurup, H. et al. (1994) .nTucleic Acids Res, 22, 20-4;
Cummins, L.L. et al, (1995) Nucleic Acids Res, 23, 2019-24; Eaton, B.E. et al. (1995) Chem Bio1, 2, 633-8; Green, L.S. et al., (1995) Chem Biol, 2, 683-95; Kawasaki, A.M.
et al., (1993) J Med Chem, 36, 831-41; Lesnik, E.A. et al., (1993) Biochemistry, 32, 7832-8; Miller, L.E. et al., (1993) J Physiol, 469, 213-43. Such a modification may for example be an H atom, a F atom or a 0-CH3 group or NH2 group at the 2' position of an individual nucleotide that is contained in the nucleic acid. Furthermore the nucleic acid according to the present invention can include at least one LNA nucleotide. In one embodiment the nucleic acid according to the present invention consists of LNA
nucleotides, and preferably completely of LNA nucleotides, In one embodiment the nucleic acids according to the present invention can be a multi-part nucleic acid. A
multi-part nucleic acid as used herein is a nucleic acid that consists of at least two nucleic acid strands. These at least two nucleic acid strands form a functional unit, the functional unit being a ligand for a target molecule.
The at least two nucleic acid strands can be derived from one of the nucleic acids according to the invention either by cleavage of the nucleic acid in order to produce two strands, or by synthesis from a nucleic acid corresponding to a first part of the total nucleic acid, iaeo nucleic acid according to the invention, and a further nucleic acid corresponding to the second part of the total nucleic acid. It is recognised that cleavage as well as synthesis can be used in order to produce a multi-part nucleic acid where more than the two strands described above by way of example can be present. In other words, the at least two nucleic acid strands are preferably different from two strands that are complementary to one another and hybridise with one another, although a complementarity can exist to a certain extent between the various nucleic acid parts.
The present inventors have established that the nucleic acids according to the present invention have a very advantageous KD value range or dissociation value range, and therefore a very advantageous binding constanto One way of determining the binding constant is to use an equilibrium binding assay, as is described in Example 1.
The KD value of the nucleic acids according to the invention is preferably less than 1 uM, A KD value of about 1~iM should be characteristic of a non-specific binding of a nucleic acid to a target. As will be recognised by those skilled in the art, the KD value of a group of compounds such as for example the nucleic acids according to the present invention varies within a certain range. The KD of about 1~iM mentioned above is a preferred upper limiting value for the KD value. The preferred lower limiting value for the KD of nucleic acids binding the target molecule can be about picomolar or less. It is within the scope of the present invention for the KD values of the individual nucleic acids which bind to HMGA, preferably to lie within this range. Preferred ranges can be selected by choosing a first number within this range and a second number within this range. Preferred upper values are 0<25 pM, 0.1 pM, and preferred lower values are 100 nM, 10 nM, 1 nM and 0.05 nM.
The nucleic acids according to the invention preferably bind to HMGAlb at 372C in solution with a dissociation constant KD<20 nM, as illustrated in Example 2.
The nucleic acids according to the present invention can be of arbitrary length, provided that they are still able to bind to the target molecule. It is recognised in the prior art that specific lengths of the nucleic acids according to the present invention are preferred.
Typically the length is between 15 and 120 nucleotideso It is also recognised by those skilled in the art that any whole number between 15 and 120 is a preferred possible length for the nucleic acids according to the present inventiono Preferred ranges for the length of the nucleic acids according to the present invention are lengths of about 20 to 100 nucleotides, about 20 to 80 nucleotides, about 20 to 60 nucleotides, about 20 to 50 nucleotides and about 30 to 50 nucleotides.
In one embodiment the nucleic acids according to the invention are present in modified form. A particularly preferred form of modification is PEGylation. In this, the modification of the nucleic acids according to the invention involves coupling with polyethylene glycol (PEG) or other groups.
On account of the high stability of the nucleic acids according to the invention, in particular in the embodiment in which these exist as L-nucleic acids, it is possible to administer the nucleic acids according to the invention directly to a patient requiring such a treatment. Preferably the nucleic acids according to the invention are prepared as a physiological solution for topical or systemic application.
Apart from the direct use of the nucleic acids according to the invention for the treatment, prevention and diagnosis of the diseases described herein, these can be present or used individually or in combination with others in a pharmaceutical composition. The pharmaceutical composition according to the present invention accordingly comprises at least one of the nucleic acids according to the present invention and preferably a pharmaceutically acceptable binder. Such a binder may be any known binder or one known in the field. In particular such a binder is any binder, as is described in connection with the production of the medicament, as disclosed herein. In a further embodiment the pharmaceutical composition includes a further pharmaceutically active agent. It is within the scope of the present invention for the medicament described herein to constitute the pharmaceutical composition as is described herein.
Preferably the pharmaceutical composition is intended for intravenous administration. It is however also within the scope of the present invention for such pharmaceutical compositions to be administered intramuscularly, intraperitoneally or subcutaneously. Other administration routes are orally or intranasally, in which connection that form of administration is preferred that is least invasive, but at the same time retains the effectiveness of the pharmaceutical composition and the pharmaceutically active agent.
The nucleic acids according to the invention are preferably contained as such, or in connection with the pharmaceutical composition according to the invention, dissolved in a pharmaceutically acceptable solvent. Such solvents are in particular those that are selected from the group comprising water, physiological saline, PBS or a glucose solution, in particular a 5% glucose solutiono Such a carrier can be for example water, buffer, PBS, glucose solution, preferably a 5% glucose solution (iso-osmotic), starch, sugars, gelatin or any other acceptable carrier substance. Such carriers are generally known to those skilled in the art in this field.
It is within the scope of the present invention for the pharmaceutical composition to contain at least one of the nucleic acids according to the invention in its various embodiments, including, but not restricted thereto, the nucleic acid as conjugate, as described herein.
In a further embodiment the medicament comprises a further pharmaceutically active agent. Such further pharmaceutical active agents are for example protease inhibitors, proliferation inhibitors and angiogenesis inhibitors and/or agents that have a cytostatic effect.
Alternatively or in addition, such a further pharmaceutically active agent is a further nucleic acid according to the present invention. Alternatively, the medicament comprises at least one or more nucleic acids that bind to a target molecule that is different from HMGA, or has a function that is different from one of the nucleic acids according to the present inventiona The pharmaceutical composition according to the present invention can be used for the treatment, diagnosis and/or prevention of each of the diseases or disorders described herein<
In a further aspect the present invention relates to a method for the treatment of a living organism requiring such a treatment, wherein the method includes the administration of a pharmaceutically active amount of at least one of the nucleic acids according to the present invention. In one embodiment the living organism suffers from a disease, or there is a risk that it will suffer from such a disease, the disease being one of those mentioned herein, in particular a disease that is described in connection with the use of one of the nucleic acids according to the present invention for the production of a medicament.
Although the use of the nucleic acids according to the invention already follows from the involvement illustrated above of HMGA proteins in the various diseases and states, this aspect will be discussed further hereinafter for illustrative purposes.
HMGA proteins and their genes have in particular become increasingly involved in the diagnosis and prognosis of neoplastic diseases and have been proposed as potential biomarkers. In healthy tissue the expression level of HMGAla/b proteins is very low, if detectable at all.
Raised HMGAla/b protein expression is characteristic of the phenotype of a large number of tumours and metastases of very many types of cancer (Sarhadi et al. 2006, Balcercak et al. 2005, Briese et al. 2006, Chang et a1.
2005, Peters et al. 2005, Sato et al. 2005, Chiappetta et a1.2004, Li et al. 2004 , Chuma et al. 2004 , Donato et al. 2004, Czyz et al. 2004, Kettunen et al. 2004, Lee et al. 2004, Chen et al. 2004, Abe et al. 2003, Blacerczak et al. 2003, Flohr et al. 2003 , Masciullo et al. 2003, Nam et al. 2003, Pierantoni et al. 2003) . High HMGA protein expression correlates significantly with a poor prognosis and the formation of inetastases. The detection of the HMGAla/b expression level in biopsies and its histological characterisation is a diagnostic approach to the early detection, prognosis and identification of neoplastic diseases, in particular the diseases and conditions discussed hereinbeforee Furthermore an association between HMGA1 proteins and arteriosclerotic plaques is described in the literature (Schlueter et al. 2005e)o HMGA1 regulates CD44, one of the principal target genes for the formation of plaques. In this connection it was found, compared to the surrounding tissue, that the affected regions such as neo-intimal, vascular smooth muscle cells, macrophages and new blood vessels have a high expression of HMGAlo HMGA1 appears therefore to be one of the mediators in the formation of plaque and is thus a target molecule for diagnostic purposes.
The L-nucleic acids described here and in particular the spiegelmers, which bind HMGAla/b, can within the scope of the methods known to the person skilled in the art be used in a similar way to antibodieso Up to now only very few specific (differentiating) and affine antibodies against HMGA1 have been identified and are commercially obtainable. This appears to be due to the non-existent secondary structure of HMGA1, which is not a suitable target for the MHC complex in the generation of antibodies, Against this background it was however surprisingly found that the biotinylated HMGAla/b-binding spiegelmer 51-bio-NOX-A50 recognises in the western blot procedure HMGAla/b as individual bands in cancer cell lineso Furthermore, as described in Example 2, recombinantly expressed HMGAlb protein could be detected. The detection of the biotinylated spiegelmer is carried out for example by an anti-biotin antibody conjugated by means of horseradish peroxidase (HRP), The in vivo diagnosis of HMGAla/b is a further approach, in which the nucleic acids according to the invention can be used. Tumours and metastases are often embedded in necrotic tumour cells, which release HMGAla/b to the surrounding tissue. The detection of the extracellular HMGAla/b is one approach to the diagnosis of tumours and metastases embedded in healthy tissue.
As preferably used herein, a diagnostic tool or diagnostic agent or diagnostic means is able to detect either directly or indirectly an HMGA protein, preferably HMGAla/b, as described herein, and preferably HMGAla/b as described herein, in connection with the various disorders and diseases. The diagnostic tool is suitable for detecting and/or searching for any of the diseases and conditions described herein. Such a detection is possible by the binding of the nucleic acids according to the present invention to HMGAla/b. Such a binding can be detected either directly or indirectly. The corresponding methods and means are known to those skilled in the art in this f ield. The nucleic acids according to the present invention can inter alia be labelled, which permits the detection of the nucleic acids according to the present invention, preferably the nucleic acid that is bound or can bind to HMGA protein and preferably HGNlAla/b. Such a labelling is preferably selected from the group comprising radioactive, enzymatic and fluorescence labelling. In principle all known tests that have been developed for antibodies can be adapted to the nucleic acids according to the present invention, the target molecule-binding antibody being replaced by a target molecule-binding nucleic acido In antibody tests which employ unlabelled target molecule-binding antibodies, the detection is preferably performed with a secondary antibody, which has been modified with radioactive, enzymatic or fluorescence labels and binds to the target molecule-binding antibody at its Fc fragment. In the case of a nucleic acid, preferably a nucleic acid according to the present invention, the nucleic acid is modified with such a label, the said label preferably being selected from the group consisting of biotin, CY-3 and CY-5, and such a label is detected by an antibody directed against such a label, for example an anti-biotin antibody, an anti-CY-3 antibody or an anti-CY-5 antibody, or in the case where the label is biotin, the label is detected by streptavidin or avidin, which naturally binds to biotino Such an antibody, i,eo streptavidin or avidin, is in turn preferably modified with a corresponding label, for example a radioactive, enzymatic or fluorescence label, similarly to a secondary antibody.
In a further embodiment the nucleic acids according to the present invention are detected or analysed by a second detection agent, this detection agent being a molecular beacon. The technique of molecular beacons is known to those skilled in the art in this field. In brief, these molecular beacons are nucleic acid probes which are a reverse complement of the nucleic acid probe to be detected, and accordingly hybridise with a part of the nucleic acid probe to be detected. After the binding of the nucleic acid probe the fluorophore groups of the molecular beacon are separated from one another, which leads to a change in the fluorescence signal, preferably a change in intensity. This change correlates with the amount of nucleic acid probe that is present.
It is within the scope of the present invention that the nucleic acids according to the invention can appropriately be used as L-nucleic acids within the scope of the various aspects disclosed herein.
The nucleic acids according to the invention can furthermore be used as starting material for the design of pharmaceutical active substances (drug design). In principle there are two possible approaches to this problem. One approach consists in screening libraries of compounds, wherein such libraries of compounds are preferably libraries of low molecular weight compounds (low or small molecules). Such libraries are known to those skilled in the art in this field. In one embodiment the screening is a high throughput screening. Preferably high throughput screening is fast, efficient, and is carried out as a trial-and-error evaluation of active substances in a target molecule-based assay.
Alternatively, according to the present invention the nucleic acids can be used for the rational design of active substances. Preferably the rational design of active substances is the design of a pharmaceutical active substance candidate. Starting from the three-dimensional structure of the target molecule, which is normally determined by methods such as X-ray structure analysis or nuclear magnetic resonance spectroscopy (IVNIR), computer programs are used to search through data banks containing structures of a large number of different chemical compounds. The selection is carried out by computer. The selected compounds are in addition tested in the laboratory, The rational design of active substances can take as its starting point any of the nucleic acids according to the present invention, and comprises a structure, in particular a three-dimensional structure, which is similar to the structure of the nucleic acid(s) according to the invention or is identical to that part of the structure of the nucleic acid(s) according to the invention that mediates the binding to HMG proteins. In any case, such a structure also exhibits the same or at least a similar binding behaviour to the nucleic acid(s) according to the invention. In either a further step or as an alternative step, in the rational design of active substances the preferably three-dimensional structure of those parts of the nucleic acids binding to HMG proteins is imitated by chemical groups, which are preferably different to nucleotides and nucleic acids. By means of this imitation, also termed mimicry, a compound can be constructed which is different from the nucleic acid or the nucleic acids which was/were used as starting materials for the rational design of the active substance.
Such a compound or active substance is preferably a small molecule or a peptide, In the case of screening libraries of compounds using competitive tests which are known to those skilled in the art in the field, suitable HMG analogues, HMG agonists and HMG antagonists can be founda Such competitive assays can be designed as follows. The nucleic acid according to the invention, preferably a spiegelmer, i,e, a L-nucleic acid binding the target molecule, is coupled to a preferably solid phase. In order to identify HMG analogues, a labelled HMG protein is added to the test system.
Alternatively, the HMG protein could also be coupled to a solid phase and the nucleic acid according to the invention could be labelled, A potential analogue or a potential agonist or antagonist would compete with the HMG
molecules which bind to the spiegelmer, which would result in a decrease in the signal received from the corresponding label. The screening for agonists or antagonists can include the use of a cell culture test system which is known to those skilled in the art in the field.
In a further aspect the nucleic acids according to the invention can, on account of their characteristic binding behaviour to HMG protein, be used for target (target molecule) validation. The nucleic acids according to the invention can be used in an ex vivo organ model in order to study the function of HMG protein. In principle there exist ex vivo models in which HMG agonists/antagonists can be tested.
A kit according to the present invention can comprise at least one or more of the nucleic acids according to the invention. In addition the kit can include at least one or more positive or negative controls. HMG protein against which the nucleic acid according to the invention has been screened, or to which this binds, preferably in liquid form, can be used as positive control. As negative control there can be used inter alia a peptide that behaves as regards its biophysical properties similarly to HMG protein, but which is not recognised by the nucleic acids according to the invention, or a peptide can be used having the same amino acid composition but a different sequence to HMG protein.
Furthermore the kit can include one or more buffers. The various constituents can be present in the kit in dry or lyophilised form, or dissolved in a liquid. The kit can include one or more containers, which in turn can contain one or more of the constituents of the kit. Preferably the vessels contain reaction batches, such as are necessary for a single execution of an experiment using one or more constituents of the kit.
It will be acknowledged that, unless stated to the contrary, the sequences listed herein are given in the 5'-3' direction. It will furthermore be seen that the term "the two sections hybridise with one another" is understood herein to mean that the sections can hybridise in vitro on the basis of general base pairing rules, or that the sections hybridise or can hybridise under the conditions of use, but are not necessarily hybridised with one another or are present in hybridised form under the conditions of use.
The various SEQ,ID,, the chemical structure of the nucleic acids as disclosed herein and the target molecule HMGAla/1b as used herein, the actual sequences and the internal references are summarised in the following table.
U u u ~/ u c~ ~ ~ c~ ~ Uu~ uv c~
~:)Uu u ca u u 0 u u U dd C~ ~r~ ~r44((-J55 !.d ~/ / ~p r~/~
!~ \r.o-Jy (d b/ S./ V ~d ~/
u u ~t~rr~D or1y ~:)cabq <ta c~ u~~(-~~ c/a~
'p7 !
VO SG 4l 4~ u u u !/
yr~ U C~ U C~ C7 d C~
u !J
u C) u u u (D (D u O
u Ljn 0 u C.~ CD
u 0 cJ ca u c~ u CD p p u ca 0 c~ d C~ C~ ~ c~ c~ c~
0 C~ C7 OC) UC~ C~ uuu O(D C~
C) 7~ ~ ~ ~ ~ ~ z 1~5 -0 -u -V -0) 4) tn oA on on a4 W an o4 bn on on c4 aa on an w Q a) a) u a>
~ ri. E. o r:).
aa a a a a a a~a a a a.a a a a N
w ~ 00 U
~
z z z z z z Z
~ u m w m m C~ ~d .~ N N N N N N N N N N N N N N N
e'r1 M ey M ePl e+1 cP1 e''1 c 1 N tN N N N e<1 C112 N M - - - - .-a .-a ~
Cl C4 >
cn ~
CZ
ri (D cl~
uo UO
P. cn no <
u n r40 UO CO U
.
e4 a a a a ~
aa _ o 6 ~ C5 ~ ~ ~ W
M ~_ ~ ca fl ~ c* m rv ~ ~ ~ O
z z z z ia N Cl v~ f,l E-, C-7 F-UO ~ :D u m ~ u (D
<
z 6, M r~ ' 1 I
C~ t~l ~l fil C~1 (~l fV Pl M M M M
u v ca u u u U v d C7 Q d ~}
<~aU u c c~
u ~D
m, ~ 4~ \d ' 4/ '1 W !~ o-~
U U C~ u Q~
u u u ~ u~ T~, ~~y VJ
~d ~J ~h=dW ~ro-km9y ~Y~rl J ~/< u ~C] r~.~I LJ 4~ 41 d! kA ~d s p~ ~d ~.J
u u uuo ~D ur~ u d u ua, r~
c7 d C~ a~C~~g UCa~Ca~ ~!
0 CD y~, t~ e7 ~ c~!~ ~py ro~wy ry c~q !~ J ~o-y 4õd .rdry day dW 4~ !/a4o-./y Cr~'~
u 4d W '/ 4J !J ./
C) C~ C~ CD U
co C~ C7 C~ S (-1 0 U C~ U U C) U t C7 U d ~:) C7 < <
u u u u t-~u Q Ca ~7 d C7 CJ ~Dou CJ u LJ~ L~
u uuu u Cl a> aa aa a~ a~ a~ c~ aa e~ a~ a~ ~ e~ aa ea ~
cEd y ~ .~ .~ .. .~ ~. ~ .~ .r ..~ .e. .. .., .~ ., ..~
d~ d~~ d~ d~ d d d d d~
M
f'Pl ao Z
0 ~ z 0 ~ ~ ~ r~i M
~ n n M M
cPi ri d N ~ N e=i ri M M
w t7 c~ ua c7 C~ ~~ w M M M M M M M M N N N N N N M M
~
~d ~ l~ 00 1 N M ~t Ln ~,o 00 C~
It is within the scope of the present invention that, if no sequences are explicitly given for the individual sections of the nucleic acids according to the invention, these can be freely chosen according to the technical teaching disclosed herein, i.e. can be chosen so that they exhibit the necessary binding behaviour to the respective target molecule and/or are able to form the structures, in particular secondary structures, described herein.
Furthermore, it is within the scope of preferred embodiments of the present invention that in the case where, in sequences that are identified as RNA sequences, T
is given instead of U, then T shall denote U.
The present invention is described in more detail hereinafter with the aid of the following Figures and Examples, which disclose further features, embodiments and advantages. In this connection:
Fig. 1A shows aptamers generated by in vitro selection against D-21AS-HMGAla/b, which bind the 21AS-HMGA1a/b domain;
Fig. 1B is a representation of the identified, repeatedly occurring sequence regions of the aptamers generated by in vitro selection against D-21AS-HMGAla/b, which bind the 21AS-HMGAla/b domain;
Fig. 2 is a sequence comparison of HMGAla/b and HMGA2;
Fig. 3 is a shortening of HMGAla/b-binding aptamer NOX-f;
Fig. 4 shows the binding properties of shortened HMGAla/b-binding aptamer NOX-f;
Fig. 5 shows a competition assay for measuring the binding of HMGA to the double-strand natural target DNA in the multi-well plate assay; the binding of the spiegelmer competes with the binding of the recombinant HMGAlb to the biotinylated dsDNA (AT hook motif). The detection of the bound HMGAlb is carried out through the His-Tag via nickel HRP, which converts a substrate into a fluorescing signal;
Fig. 6 shows a comparison of spiegelmer NOX-A and spiegelmer NOX-f (48nt; 33nt) in the competitive multi-well plate assay; in the plate assay, spiegelmer NOX-A as well as spiegelmer NOX-f and its shortened variant spiegelmer NOX-f33 prevent the binding of recombinant HMGAlb to its naturally occurring binding partner in the low nanomolar range.
Fig. 7 shows the activity of 2kDa-PEG-coupled spiegelmer NOX-A as well as non-functional control spiegelmer in the competitive multi-well plate assay; the PEGylated spiegelmer NOX-A competes with the binding of recombinant HMGAlb to the AT
hook motif of the dsDNA with an IC50 of 15nM; the inverse control spiegelmer of NOX-A shows at high spiegelmer concentrations a non-specific interaction with HMGAlb;
Fig. 8 shows a western blot; detection of immobilised HMGAlb by biotinylated spiegelmer; recombinant HMGAlb migrates in the electrophoretic field like a 20kDa large protein and can be recognised at low concentration (3nM) by the biotinylated spiegelmer (here with the example of NOX-A); an inverse control spiegelmer could not recognise HGMGAlb;
Fig. 9 shows the activity of free and PEGylated spiegelmer NOX-A in the competitive multi-well plate assay;
Fig< 10 is an investigation of the packing of PEGylated spiegelmer in micelles in the "RiboGreen exclusion assay ";
Fig. 11 shows the stability of PEI spiegelmer micelles in the "RiboGreen exclusion assay";
Fig. 12 shows the efficient uptake of spiegelmer packed in PEI micelles, in particular a comparison of the transfection of "naked" spiegelmer compared to spiegelmers packed in micelles, with the example of the spiegelmer NOX-A-3'PEG2kDa,; the cells which have been transfected with spiegelmer micelles exhibited at a lower setting of the camera sensitivity (camera gain) a stronger fluorescence in the cytosol compared with cells that had been incubated only with pure spiegelmer; the efficiency with both transfection methods is >95%;
Fig. 13 shows the release of spiegelmer from the endosomal compartment; spiegelmer micelles exhibited a significantly higher fluorescence compared to pure spiegelmer; spiegelmer micelles exhibited a point-like, perinuclear, and also cytoplasmic distribution pattern; the point-like distribution indicates a localisation in endosomal compartments; the diffuse distribution in the cytosol and on the plasma membrane indicates spiegelmer released from endosomes;
Fig. 14 is a proliferation assay with "naked" spiegelmer;
dose-dependent inhibition of the proliferation of MCF-7 cells at high spiegelmer concentrations after 2 days in the cell culture medium (quantification via resazurin);
Fig. 15 shows the proliferation of H1299 cells ("non-small cell lung cancer") after treatment with PEI
packed NOX-A-2kDa PEG; inhibition of the proliferation of H-1299 cells at 1pM spiegelmer, applied as PEI-spiegelmer micelles (N/P 2.5);
NOX-A showed a slight inhibition of the proliferation compared to the control spiegelmer;
Fig. 16 shows the inhibition of the HMGAla/b-induced cdc25a gene expression, detected by quantitative RT-PCR; determination of the specific inhibition of the cdc25a mRNA expression in H-1299 cells by 1pM NOX-A spiegelmer micelles (N/P 2.5) by means of RT-PCR;
Fig. 17 shows the dose-dependent inhibition of the cdc25a mRNA expression by spiegelmer NOX-A;
quantification of the dose-dependent inhibition of the cdc25a mRNA expression in H1299 cells by means of RT-PCR; NOX-A spiegelmer micelles (N/P
2,5) showed starting at 250nM a specific inhibition of the cdc25a mRNA expression; at a concentration >41aNt a non-specific effect of the control spiegelmer was found, as well as toxic effects due to the polyethyleneimine (PEI) at >
10pM (data not shown) ;
Fig. 18 shows the inhibition of the tumour growth in the xenograft model in naked mice by the spiegelmer NOX-A; inhibition of the tumour growth after subcutaneous injection of PSN-1 cells by 2mg/kg spiegelmer micelles (N/P 2.5). Spiegelmer NOX-A
produced a significant reduction in tumour growth;
Fig. 19 shows the statistical analysis of the data from the xenograft experiment; inhibition of the tumour growth after subcutaneous injection of PS1V-1 cells by 2mg/kg spiegelmer micelles (N/P
2,5); end point analysis and representation as box-and-whisker plot. NOX-A produced a highly significant reduction of the tumour growth (p=0o0098 compared to PBS and p=0.022 compared to inverse control spiegelmer);
Fig. 20 shows the tissue distribution of spiegelmer NOX-A
in the xenograft experiment; quantitative analysis of the distribution of spiegelmer NOX-A
in the plasma and tissues; a high concentration of spiegelmer NOX-A could be detected in the tumour tissue, compared to the other tissues and plasma.
Fig. 21 shows tissue distribution of spiegelmer packed in micelles and unpacked spiegelmer, 24 and 96 hours after the last injection in the xenograft experiment; quantitative analysis of the distribution of non-functional spiegelmers in plasma and tissues; in the tumour tissue a significantly raised concentration of spiegelmer could be detected in the case of a spiegelmer packed in micelles compared to the other tissues and plasma, after 24 hours and 96 hours.
Fig. 22: shows distribution of spiegelmer packed in micelles and unpacked spiegelmer in plasma and in the tumour 24 and 96 hours after the last injection in the xenograft experiment;
quantitative analysis of the distribution of a non-functional spiegelmer in plasma and tumour;
in the tumour tissue a significantly raised concentration of spiegelmer could be detected in the case of a spiegelmer packed in micelles compared to unpacked spiegelmer, after 24 hours and 96 hours.
Zz l 1a ENGAla/~~~ind.~~~ ~pi~~~lmers 1 HNGAIaIb bi~~~~~ ~equences 5 The HMGAla/b-binding RNA spiegelmers were generated by in vitro selection against D-21AS-HMGAla/b and subsequent shortening steps. The generated aptamers, which bind the 21AS-HMGAla/b domain, are shown in Fig. 1A.
10 1.1.1 Ranking and aptamer level The different clones (see Fig. 1A) were prepared as aptamers (D-RNA) by means of standard phosphoramidite synthesis and were radioactively labelled at the 5' end by kinasing (see below) . The clones were then analysed as regards their affinity and activity by means of equilibrium binding assay at two concentrations of D-bio-21aa HMGAla/b.
Radioactive labelling by kinasing:
Substanc Efinal~
RNA 5 uM
T4 forward reaction buffer (Invitrogen) lx T4 polynucleotide kinase (Invitrogen) 10 U/10 I.zlReaction batch ['Y-32P] -ATP I 111/10 1-11Reaction batch The reaction ran for 1 hour at 372C and was then stopped by heating (10 minutes at 652C). The separation of radioactive nucleotides from labelled oligonucleotides was carried out by an analytical polyacrylamide gel electrophoresis (PAGE) (see hereinafter). A "crush-and-soak" gel elution was then carried out with ammonium acetate and precipitation with ethanol (see hereinafter).
The amount of purified RNA was estimated from the radioactivity of the pellets (after the precipitation) compared to the radioactivity of the cut-out strip.
Po~~~~~~lamide gal al ctropho~~sis (PAGE) For the preparative purification of oligonucleotides, 1/2 to 2 volumes of concentrated sample buffer for denaturing PAGE
were added to the reaction batches. In addition large-scale standards were prepared as necessary (each 250 pmole) and taken up in sample buf fer o The batches were denatured for 5 minutes at 95 C and cooled on iceo A preparative, denaturing 7% or 10% PAA gel (200 x 200 x 1>5 mm) was preheated (ca, 1 hour) by applying a maximum voltage of 600 V at 40-50 W. After rinsing the cups with lx TBE the samples were plotted. After completion of the separation (50 minutes at 50 W) the gel was placed on a fluorescing thin-layer chromatography plate protected by transparent film (dye 60F254). The bands were visualised as shadows ("UV
shadowing") by means of UV light (254 nm) and were cut out with a scalpel. A"crush-and-soak" gel elution with ammonium acetate was then performedo eeCrush and-s ak gal olutbou To elute oligonucleotides from PAA gels, after comminuting the cut-out PAA gel strips 500 ul of ammoniuin acetate (2 M) was added using a pipette tip or a spatulao The "crush-and-soak" elution was carried out 2 x 1,5 hours at 689C in a thermoshaker (1000 rpm), The supernatants were freed from gel residues by "Ultrafree-MC" small columns (Millipore/Amicon, Schwalbach, Germany) in a table centrifuge (16,100 x g)o The RNA eluted in this way was then desalted by precipitation with ethanol.
Ethan l precipitation For the ethanol precipitation 1-2 ~al of glycogen were used as precipitation auxiliary. After adding 2e5 volumes of absolute ethanol and vortexing, the oligonucleotides were precipitated for 30 minutes at -802C and centrifuged off for 30 minutes at 16,100 g, 42C. The pellet was washed once with 70% ethanol and centrifuged for 5 minutes at 16,100 g, 42C.
Recording f binding bsothe~s in the (sqgil~~~ium binding assay 2 pmole of each of the 5' radioactively labelled aptamers were complexed in biotinyl-D-HMGAla/b-21mer (EPSEVPTPKRPRGRPKGSKNK [Seq> ID. 17]; see Fig. 2), produced by Bachem (Weil am Rhein, Germany). Solutions in the concentration range 1 - 3000 nM (or for the two-point measurement with 300 nM and 30 nM or 100 nM and 10 nM
peptide) were incubated for 1 hour at 372C in selection buffer (10mM Tris HC1 pH7>4, 5mM KC1, 0,8mM MgC12, 0,1%
Tween). A solution without biotinylated D-HMGAla/b-21mer served as background control. The peptide and complexes were then immobilised within 30 minutes at 372C with 10 ~xl of streptavidin UltraLink gel. The radioactivity of the suspension was measured. The supernatant was removed. The matrix was then washed once with 100 jal of selection buffer and then precipitated with selection buffer. By measuring the radioactivity the aptamer fraction present together with biotinyl-D-HMGAla/b-21mer in the complex was determined for each peptide concentration. The dissociation constants of the active species and the proportion of active molecules were determined by graphical plotting and fit (GraFit, Version 4Ø10, Erithacus Software), Results For all clones synthesised as aptamers (D-RNA) a dissociation constant for the binding to the 21 amino acid-long D fragment of HMGAla/b (Biotinyl-D-HMGAla/b-21mer) of 8 - 22 nM was determined in the equilibrium binding assay (Fig. 1A)o 1.1.2 Shortening in Example 132-B3 All selection candidates exhibited a repetitively occurring sequence motif GGGCG or GGGUG or GGGAG, which is stabilised at the 51 end and at the 3' end by a helix/stem motif (Fig.
3), An analysis of the probable structure and precipitation of the RNA aptamers according to Zuker (Nucleic Acids Res.
2003 Jul 1 31(13)03406-15) showed that the predetermined stem/helix structure had lengthened in some cases (132-C3, 132-B3, 132-C4, 132-E2, 132-A2, 132-Hl, 132-Fl, 122-G2, 122-E2, see Fig. 1A). This stem-Helix structure formed the basis for the further shortening of these candidates. This further shortening of the candidates was carried out by identifying and stabilising the minimal binding motif by precipitation analysis followed by deletion analysis of the synthetic D-RNAs with respect to the binding to the HMGAla/b fragment. These binding properties were determined by equilibrium binding assay. Fig. 3 shows by way of example in the candidate NOX-f (132-B3) the shortening of the aptamer on the basis of the stabilising stem structure, which can be found in lengthened form in the candidates 132-C3, 132-B3, 132-C4, 132-E2, 132-A2, 132-H1, 132-Fl, 122-G2, 122-E2 (see Fig, 1A), A shortening to a 32 nucleotide-long aptamer variant of NOX-f with a 6 nucleotide-long stem (NOX-f 32nt) did not lead to any loss of the binding properties to the 21aa HMGAla/b fragment (Figs. 3 and 4). The artificial insertion of an adenosine at the third position of the 5'- position stem led to a theoretical formation of a 7 nucleotide-long stem without a looped-out region and served to complete the stem in the 3' region (NOX-f 33nt, Figs. 3 and 4). The measurement of the binding properties (affinity and activity) by means of equilibrium binding assay on the 21 amino acid-long domain of HMGAla/b was not influenced by these changes.
The sequences 132-G2, 122-Al, 122-Cl, 122-B2 and 122-B4 have on the other hand at the 5' end and 3' end of the repetitively occurring sequence motif (GGGCG or GGGUG or GGGAG) a significantly shorter stem structure. A
shortening of the stem structure led to a binding loss. A
possible shortening of the central region, which is longer for these sequences, between the repetitive sequence motif (GGGCG or GGGUG or GGGAG) was not carried out.
The Seq. IDs of the aptamer sequences of the HMGA-binding nucleic acids disclosed herein are as follows:
S qo ID Xnt rx~al Refer mm~S RNA/Paptid 34 132-C3, NOX-h D-RNA (aptamer) 35 132-B3, NOX-f (48nt) D-RNA (aptamer) 36 132-C4 D-RNA (aptamer) 37 132-E2 D-RNA (aptamer) 38 132-A2 D-RNA (aptamer) 39 132-Hl, NOX-i D-RNA (aptamer) 40 132-Fl D-RNA (aptamer) 41 132-G2, NOX-g D-RNA (aptamer) 42 122-Al, NOX-A D-RNA (aptamer) 43 122-Cl, NOX-B D-RNA (aptamer) 44 122-B2 D-RNA (aptamer) 45 122-E2, NOX-C D-RNA (aptamer) 46 122-G2, NOX-E D-RNA (aptamer) 47 122-B4, NOX-D n-RNA (aptamer) 48 132-B3 32nt, NOX-f 32nt D-RNA (aptamer) 49 132-B3 33nt, NOX-f 33nt D-RNA (aptamer) As has already been discussed herein and is known to those skilled in the art in this field the enantiomer, consisting of L-nucleotides, of an aptamer, i,e, of a D-nucleic acid which was generated against a D-peptide, binds to the mirror-image enantiomer of the D-peptide, ioeo the naturally occurring L-peptide< This L-nucleic acid is herein also referred to as spiegelmer and otherwise exhibits in principle the same binding properties as the aptamer.
1,2 Characteristic properties of HMGA/b-binding spiegelmers 1,2a1 Repetitive sequence elements: Box Al and Box A2 A repetitive sequence element of the sequence GGGCG or GGGUG or GGGAG is characteristic of all spiegelmers that bind to HMGAla/bo This sequence element appears twice in HMGA1a/b-binding spiegelmers (Figs. 1A and 1B). The sequence element lying closer to the 5' end of the spiegelmers is herein referred to as Box A1o The sequence element lying closer to the 3' end of the spiegelmers is on the other hand referred to herein as Box A2. Box Al and Box A2 and their mutual arrangement probably represent the decisive feature of HMGAla/b-binding spiegelmers.
1a2>2 Sequence section between Box Al and Box A2 Between Box Al and Box A2 there is either a sequence section with a length of six to seven nucleic acids or 12 to 22 nucleotides (Figs. 1A and 1B)o Since these sequence sections differ not only in their length, they are discussed separately.
Case 1: Sequence section comprises six to seven nucleotides If the sequence section lying between Box Al and Box A2 has a length of six nucleotides, then the sequence section exhibits the sequence UGGUUG, UGGCUG, CGGUUG, AGGUUG or GUGUAA. An insertion of one nucleotide (uracil) into the sequence CGGUUG, which leads to the sequence CGGUUUG, has neither a negative nor a positive influence on the binding properties of the spiegelmers.
Case 2: Sequence section comprises 12 to 22 nucleotides If the sequence section lying between Box Al and Box A2 has a length of 12 to 22 nucleotides, then this sequence section comprises two sequence regions of equal length, which can possibly hybridise with one another (Helix C).
The hybridisation is in this case effected by in each case three to six nucleotides. Three to five unpaired nucleotides are located between the nucleotides forming the Helix C. One to three nucleotides are present unpaired between the 3' end of Box Al and the 5' end of Helix C.
One to five nucleotides can be present unpaired between the 3' end of Helix C and the 5' end of Box A2.
1.2.3 Helical structure at the 5' end and 3' end of the spiegelmers All HMGAla/b-binding spiegelmers are characterised at their 5' and 3' ends by sequence sections which can hybridise with one another (Helix Al and Helix A2, (Figs. 1A and 1B)o The number of nucleotides hybridising with one another in each case can vary from four to eight. In this connection, this presumably double-strand region can extend to the 5' end of Box Al and the 3' end of Box A2. Should this not be the case, then Box Al and Box A2 can be flanked by nucleotides that additionally hybridise with one another (Helix B1 and Helix B2). This can involve regions of in each case four to eight nucleotides (Figs. 1A and 1B).
Within the scope of the invention forming the basis of the present application, various classes of nucleic acids and in particular L-nucleic acids which bind to the target molecule have been identified. The following illustration and description of these classes, which are herein also termed cases, is to this extent an integral part of the present invention. For each class their principal structure and exemplary L-nucleic acids for this class are specified hereinafter using the respective abbreviations of the L-nucleic acids.
~~~e Io 132 C3o 132-B3o 132-Cd 132 E2a 132 A2 132-H1, 132 Fl9 126 G2p 132 B3 32nt, 136 E3 33nt Helix Al-NX-Ealix Bl N6N7Box A1 1N2GN8N3N4N5BOX A2G-Ny-Helgx B2-NZ-Helix A2 (Cas IA) or Helix A1-NX-~~~iy. BI-N6N7 Box A1 1N2GN$N3N4N5BOX A2 elix B2mNZ-Helix A2 (~~~s IB) Nl = U, C, A, G;
N2 = G, U;
N3 = U, C;
N4 = U, A;
N5 = G, A;
N6 = G, A, U;
N7 = G, U;
N8 = U or no nucleotide;
NX = zero to five nucleotides;
NY = zero or six nucleotides;
Nz, = zero to six nucleotides;
Box A1 = Box A2 = GGGCG or GGGUG or GGGAG;
Helix Al and Helix A2 = in each case four to eight nucleotides, which completely or partly hybridise with one another, in which the sum of the in each case mutually hybridising nucleotides of Helix Al and Helix A2 and Helix BI agad Helix B2 is 10 to 12 nucleotides;
Helix Bl amd Helix B2 = in each case four to eight nucleotides, which hybridise with one another, in which the sum of the in each case mutually hybridising nucleotides of Helix Al and Helix A2 and Helix BI and Helix B2 is 10 to 12 nucleotides.
The molecules are active also after the shortening at the 5' end and at the 3' end. After the removal of the Helix Al and A2 as well as the regions N6N7 and GNy the shortened molecules retain their binding properties. This was demonstrated for the shortened variants 132-B3 32nt (NOX-f 32nt) and 132-B3 33nt (NOX-f 33nt) (see Figs. 3 and 4).
Case 2Aa 132-G2a 122-A1 122 C12 122 B2o 122 B4 Helix A1-I~Ta Box A1 -Nb ~Helix C10-Nc4Helix C2a-Nd Box A2 -G-Ne-Helix A2 Na = one to five nucleotides Nb = three nucleotides Nc = three to five nucleotides Nd = two to five nucleotides Ne = one to two nucleotides, preferably A or UU
Box A1 = Box A2 = GGGCG or GGGUG or GGGAG
Helix Al and Helix A2 = in each case five to six nucleotides, which completely or partly hybridise with one another, IHelix-C1 und ~Helix C2~ = in each case five to six -- - - - - - - - - - - - - - -nucleotides, which hybridise with one anothero Case 2Bs 122-E2 aoo a omom4 Helix Al-1Vi-Selix BI-Nj Box Al-A-eHelix C1'-1~T~ pHelix C2g-G ox A2-G-Relix B2-A-Helix A2 Ni = two nucleotides, preferably CA
Nj = two nucleotides, preferably AG
N, = four nucleotides, preferably GAUG
Box A1 = Box A2 = GGGCG or GGGUG or GGGAG
Helix Al and Helix A2 = in each case six nucleotides, which hybridise with one another, ~~li~ BI ~nd Helix B2 = in each case five nucleotides, which hybridise with one another, gHelixoCl and eHelix C2a = in each case three nucleotides, which hybridise with one another.
~xample 2g Domain Approach 2e1 Determination of the interaction of HMGAla/b spiegelmers and recombinant HMGAlb in the competition assay Execution/Method Cloning of Ris6m~~~elled ~Alb The BD-FreedomTM ORF clone GH00552L1,0 (high mobility group AT hookl) with the sequence coding for HMGAlb was purchased from BioCat Heidelberg. The sequence had already been changed therein so that the stop codon is converted into a codon coding for leucine, in order to permit C-terminal fusions. The sequence of the clone corresponds generally to the sequence stored in the RefSeq data bank under No.
NM002131. The sequence coding for HNlGAlb was amplified by means of a standard PCR with the primers HMG_fwdl (TCGACACCATGGGTGAGTC, SeqeID 34) and HNlG_revl (GTCTAGAAAGCTTCCCAACTG, Seq,ID 35)a In this connection the base after ATG was changed from A to G, in order thereby to introduce a NcoI interface. The PCR product was cleaved according to the manufacturer's instructions with the restriction enzymes NcoI and HindIIl (both from NEB, Frankfurt am Main, Germany) and purified via an agarose gel. The vector pH02d (Fasshauer et al. (1997) J.Biol.Chem. 272e28036 - 28041)) was similarly cleaved with NcoI and HindliI and purified via an agarose gel. The Vector pH02d permits the expression of a protein fused to the C-terminal end with a sequence of six histidine residues (His6-tag), under the control of a T7-promotor (Fasshauer et al., 1997, JBC 272028036).
The purified and cleaved PCR product was ligated into the prepared vector overnight at 15 C with the aid of a T4 ligase, corresponding to the manufacturer's instructions 5(MBI Fermentas, St. Leon-Roth, Germany)o Bacteria of strain DH5~ were transformed with the ligation producto The correctness of the plasmids from obtained colonies was checked by sequencing. The fusion protein HMGAlb-His6 coded by pHO2d/HMGAlb has, compared to the natural HMGAlb protein, a glycine (G) instead of serine (S) at position 2, and after the C-terminal glutamine (Q) a leucine (L) (see above), followed by five further amino acids (G S L N S) (coded by the vector), to which the six histidines (H) are joined.
Expressaon and Purification of HHGIb His6 For the expression of the fusion protein bacteria of strain BL21 were transformed with the plasmid pHO2d/HMGAlbo The expression of the fusion protein was induced with isopropylthio-R-D-galactoside (IPTG). After 4 hours the bacteria were centrifuged off for 15 minutes at 10,000 x g and the pellet was stored at -20 C until further use.
For the extraction of the fusion protein 25 ml of extraction buffer (1% n-octyl-R,D-thioglucopyranoside (OTG) in 50 mM NaXPO4 buffer, pH 800, 250 mM NaCl, 10 mM imidazole and MiniProtease inhibitor tablets (Roche, Mannheim, Germany) (5 hrs/50 ml)) were added to a frozen bacteria pellet from 500 ml of culture, followed by 5pl of benzonase (gradel; MERCK, Darmstadt, Germany), homogenised by pipetting and pipetting off, and incubated for 5 min at RT> This was followed by centrifugation for 15 mins at 10,000 x g(RT)o The supernatant was filtered through a fluted filter and then added to a HIS-SELECT column (HIS-SELECT Cartridge, Sigma, Deisenhofen, Germany) equilibrated with wash buffer (50 mM NaXPO4 buffer, pH 8, 0, 250 mM NaCl, mN! imidazole, all from MERCK, Darmstadt, Germany)o After washing the column with 10 - 15 ml of wash buffer the fusion protein was eluted with elution buffer (250 mM
ixnidazole in wash buffer) in 0,5 - 1 ml size fractions.
10 Protein-containing fractions were checked for purity by means of gel electrophoresis(16% polyacrylamide gel according to Schager & Jagow, 1987, AnaleBiochemo 1660368-379), Fractions with fusion protein were purified, if necessary dialysed using a suitable buffer, and after protein determination were tested again for purity. The purified fusion protein was stored in aliquots at -20 Ca ~~~ermination of ~~(a interaction of HMGAI&/~ ~pi ~~~~er~
and ~~A1b Xia6 A test based on the 96-well format was used for a more detailed analysis of the affinity of the HMGAla/b-spiegelmers for H1vlGAlbo In this test the binding of the HMGAla/b spiegelmers to HMGAlb-His6 prevents its interaction with a DNA oligonucleotide that has a binding site for HMGAla/bo This DNA oligonucleotide (dsDNA AT
hook) (Fashena et alo, 1992) is labelled on one strand with a biotin molecule, via which it can be bound to plates coated with streptavidin. The detection of HMGAlb-His6 bound to DNA is carried out with horseradish peroxidase modified with nickel (Nickel-HRP), which transforms a fluorogenic substrate. In this assay the spiegelmer displaces the recombinant HMGAlb from its natural binding partner. On account of the 1:1:1 stoichiometry of spiegelmer/ rHMGAlb/ dsDNA AT Hook, a direct prediction can be made regarding the affinity of the spiegelmers for HMGAlba The principle of the assay is illustrated in F'ig 5.
To carry out this test spiegelmers in various concentrations and HMGAlb-His6 (0.36~ag/ml; ca. 30 nM) in a total volume of 100 ~zl are incubated for 10 minutes in a tapered floor plate at room temperature while shaking. The incubation solution also containso 25 mM Tris/HC1, pH 7.0 (Ambion, Austin, TX, USA), 140 mM KC1 (Ambion, Austin, TX, USA), 12 mM KTaCl (Ambion, Austin, TX, USA), 0,8 mN! MgC12 (Ambion, Austin, TX, USA), 0.25 mg/ml BSA (Roche, Mannheim, Germany), 1 mM DTT (Invitrogen, Karlsruhe, Germany), 18 -}zg/ml poly(dGdC) (Sigma, Deisenhofen, Germany)), 0.05 %
Tween 20 (Roche, Mannheim, Germany). 2 ul of biotinylated DNA oligonucleotides dsDNA AT hook (equimolar mixture of 5'biotin-TCGAAAA.AAGC CTGGC (34 nt) and 20 5'GCCAGTTTTTTTTTTTTTTTTTTGCTTTTTT (31 nt); 75 }aN! in 150 mM
NaC1 (Ambion, Austin, TX, USA)) are then added and incubated for a further 10 mins at RT while shaking. The batches are then transferred to a black 96-well plate coated with streptavidin (ReactiBind from Pierce, Bonn, Germany)) and incubated for 30 mins at RT while gently shaking. Following this the wells of the plate are washed three times, each time with 200 ul of TBSTCM (20 mM
Tris/HC1, pH 7.6 (Ambion, Austin, TX, USA); 137 mM 1VaCl (Ambion, Austin, TX, USA), 1 mM MgCl2 (Ambion, Austin, TX, USA), 1 mM CaC12 (Sigma, Deisenhofen, Germany), 0.05% Tween 20 (Roche, Mannheim, Germany)). 50 pl of a dilute nickel-HRP solution are added to each well (ExpressDetector nickel-HRP, (Medac, Hamburg, Germany) 1:1000 in 10 mg/ml BSA (Roche, Mannheim, Germany)in TBSTCM) and incubated for 1 hour at RT while gently shaking. The wells are then washed again three times with 200 ~il TBSTCM each time.
100 ~al of the fluorogenic HRP substrate (QuantaBlue, Pierce, Bonn, Germany) are then added to each well and the fluorescence is measured after 15 mins (ex: 340/em:
405 nm), Result It was shown that the spiegelmers NOX-A (50nt), NOX-f (33nt) and NOX-f (48nt) compete in a concentration-dependent manner with the binding of HMGAlb-His6 to the biotinylated DNA-Oligonucleotide (Fig. 6)e A IC50 of ca.
15 nM is found for spiegelmer NOX-A.
In contrast to the active spiegelmer, a control spiegelmer with a inverse sequence to NOX-A showed in a concentration of up 0.5 pM no effect on the binding of HMGAlb-His6 to the DNA oligonucleotide, and non-specific interactions with HMGAlb-His6 occur only at concentrations above 1liM
(Figa 7).
2o 2 Us of apiaga1~ers to ~~~~~t HMGAlb by western blot Execution/Methods The recombinantly expressed HMGAlb was separated by gel electrophoresis on a 16% PAA-tricin gel and transferred by means of electroblotting to nitrocellulose membraneso The membrane was then blocked with 5% skimmed milk and 100 nM
non-specific spiegelmer in 1xTBST (20 mM Tris/HC1 pH 706, 137 mM NaCl, 0.1% Tween) for 1 hour and washed three times for 10 minutes with 1xTBSTe The detection of the recombinant HMGAlb was carried out with spiegelmer NOX-A
biotinylated at the 5' end (5'bioNOX-A) 5'bioNOX-A was diluted in 1xTBST with 1mM each of calcium and magnesium (TBST+Ca/Mg) and 100 nM non-specific spiegelmer and incubated for 1,5 hours. The blot was then washed three times for 10 minutes with lx TBST+ Ca/ Mg and the bound biotinylated spiegelmer was incubated with an anti-biotin antibody in TBST+ Ca/Mg for 45 minuteso The blot was then washed five times for 10 minutes with 1xTBST+Ca/Mg and the secondary antibody coupled with horseradish peroxidase (HRP) was detected by means of LumiGLO detection reagent (Cell Signaling Technology), Result The binding of a 5'-terminal biotinylated spiegelmer to the recombinantly expressed HMGAlb was demonstrated by means of the aforedescribed process. Similarly to a detection based on antibodies, 5ug of HMGAlb were detected with 3nM bio-NOX-A after transfer to a blot membrane. The inverse spiegelmer of NOX-A could not recognise HMGAlb, which confirms the specific binding of NOX-A (Fig. S)m Example 3g PEI-Spiagalm r Formulation 301 Principle of the p lyethyl n imin -m diated transfection of spiagelm rs The target molecule HMGAla/b is expressed in the cytosol and finds as transcription factor its natural binding partner, the double-strand DNA in the cell nucleus. The HMGAla/b-mediated cellular responses should be antagonised by binding of the spiegelmer to HMGAla/b in the cytosol, and competition of the HMGAla/b bound by the AT hooks to the DNA in cell nucleus. On account of the negative charge of the plasma membrane DNA and RNA molecule are not readily taken up by passive transport from a cell. One of the approaches to the intracellular transport by nucleic acids is the condensation or packing with charged particles or reagents, resulting in a charge of the overall complex.
This complex is easily taken up through endocytosis and thus passes into the cytosol of the cell. Disadvantages of this method are the stability of the DNA/RNA and the release of the nucleic acid from the endosomal compartment.
In the cytosol of the cell a lysosome is quickly formed from the constricted endosome by the introduction of proteases or nucleases and by protonation of the compartment, Nucleases digest the nucleic acids there and in addition the nucleic acid is not stable in the acidic medium. The whole complex is rapidly transported again out of the cell by exocytosis and decomposition in the Golgi apparatus, and therefore only a few nucleic acids pass into the cell. One of the preconditions for a suitable transfection system is thus the stabilisation as well as the release of the nucleic acid from the endosome into the cytosol. As regards stability RNA spiegelmers have ideal properties for a transfection of eukaryotic cells, since being unnatural enantiomers they are not cleaved by enzymes.
The selected transfection system is based on the formation of micelles of nucleic acids with branched polyethyleneimine (PEI)o The phospate backbone of the nucleic acids interacts with the free nitrogen positions of the PEI and forms small micelles by cross-branching, which have a positive charge on account of the PEI. In this connection PEI with a molecular weight of 3 to 800 kDa is used. The smaller the PEI, the smaller are the formed micelles. The use of 25 kDa cross-branched PEI (Sigma-Aldrich Cat. No. 40;872-7) leads on addition of nucleic acids to the formation of polyplexes of size 100 nm up to 500 nm, though typically to polyplexes of size 100 to 200 nm. As a rule a nitrogen/phosphate ratio of 2e1 to 5a1 is used, in some cases even up to 20e1e The packing of the nucleic acid in micelles results in a change of the zeta potential of the complex to -- (+) 21 mV with a N/P ratio of 3. It is known that with increasing, positive zeta potential of complexes the toxicity to culture cells rises.
These micelles are however easily taken up as endosomes by a cell by constriction of the plasma membrane. The PEI now buffers inflowing protons, as a result of which many chloride ions in the interior of the endosome lead to a swelling of the compartment on account of the osmotic pressure. This effect of PEI is described in the literature as the proton sponge effect (Sonawane et alo, JBC, 2003, Vol.278; No.45(7) pp.44826-44831) and ultimately leads to the rupture of the endosome and to the release of the spiegelmers into the cytosol.
The nucleic acid-PEI complex has a tendency on account of a strongly positive charge to interaction and aggregation with serum proteins, and also to exhibit the aforedescribed cell toxicity. Thus, it has been described in the literature that high doses of nucleic acid-PEI micelles after subcutaneous and intravenous injection in rats can rapidly lead to an accumulation in the lungs and thus to embolisms/infarcts, The solution to this problem is to derivatise the nucleic acid with 2 kDa polyethylene glycol (PEG). These residues surround the micelles like a shield and prevent the binding to serum proteins (Ogris et al., Gene Therapy, 1999, 6(595-605), Furthermore, the zeta potential is reduced to +/- 0 mV, which leads to a lower cell toxicity while retaining the buffer capacity of the PEI as regards the proton sponge effect.
3a2 Spi galmeg Activity with PEG2000 The lead candidates NOX-A and NOX-f were produced synthetically as aptamer and spiegelmer with a 3'-terminal amino group, and were then PEGylated via the amino radical.
It was shown by means of equilibrium binding assays that PEGylation has no influence on the binding properties of the aptamers to the HMGAla/b fragment. Furthermore, it was shown by means of competition assays with recombinant full-length HMGAla/b that also the binding of spiegelmers to the full-length HMGA1a/b is independent of the 3'-terminal PEGylation (Fig. 9), 3o3 Spiagalmer Packing The packing of sterile, PEGylated spiegelmer was carried out in PBS by adding 25 kDa of cross-branched polyethyleneimine (PEI) (ALDRICH, Cat.e 40,872-7) in a ratio of the absolute nitrogen fraction of the PEI to the absolute phosphate of the ribonucleic acid backbone of 2,5a1 (N/P 2.5). The sterile, autoclaved PEI solution had a concentration of 200 mM free nitrogen groups and was adjusted to a pH of 7,4 with 1 M hydrochloric acid. The sterile filtered spiegelmer was taken in a concentration of up to 700 uM in 1xPBS with Ca/Mg and after addition of sterile filtered PEI was incubated for 30-60 minutes at room temperature> Ideally the complex formation takes place with the smallest possible adjusted concentration of added spiegelmer, since high concentrations of spiegelmer lead to randomly large aggregates. The formation of spiegelmer micelles was measured by means of a dye exclusion assay. For this, it was determined how much spiegelmer can be detected by the dye before and after packing in micelles. RiboGreen (M. Probes) was used as dye, and the fluorescence was measured with an ELISA
reader. 1 uM spiegelmer was added in each case to 100 pl 1xPES and increasing amounts of PEI were added. 100 ul of 0.2 ug/ul RiboGreen were placed in a 96-well microtitre plate suitable for fluorescence, and after incubating the micelle batch for 30 minutes at room temperature 10 pl were pipetted into the microtitre plate. Starting from a N/P
ratio of 2, more than 90% of the spiegelmers were present as micelles (Fig.10)< In this connection PEI alone had no influence on the fluorescence of the dye.
3.4 ~~~~ility of Spiagc~lm r Hic lles 1~zM of spiegelmer micelles were stored under conditions specified in Fig. 11. The stability of spiegelmer micelles was measured by the dye exclusion assay described in Section 3.3 A stability study of the micelles showed that the storage of micelles in different media as well as at different temperatures has no influence on the spiegelmer micelles. The freeze drying of ribozyme/PEI complexes without any loss of the properties of the ribozyme is also described in the literature (Brus-C et al>, J. Control Release, 2004, Feb, 20, 95(1), 199-31)0 3.5 Uptake of ~~~~~~~~er Hica1l s The intracellular uptake of spiegelmer micelles was established in a cell culture system of HS578T cellso 1x104 HS578T cells were allowed to grow on sterile 20 mm size cover classes to a confluence of 30-40%. 5'-labelled spiegelmer NOX-A-3'-PEG was packed with a N/P ratio 20501 in micelles, added in a concentration of 1 u1Vt to the cells, and incubated for 16 hours at 37 Co As control for the passive uptake of spiegelmers, 1 uM of pure fluorescence-labelled spiegelmer was in each case incubated with the cells. The cells were then washed three times with 1 ml of PBS and fixed for 30 minutes with 3% paraformaldehyde. The preparations were again washed three times with 1 ml of PBS, incubated for a further 10-20 seconds with a DAPI
solution (1 pl stock to 10 ml 1xPBS) to stain the chomatin in the cell nucleus, washed once more, and covered with a mounting solution. The preparations prepared in this way were analysed in a fluorescence microscope (emission 488 nm/extinction 514-522nm).
It was shown that spiegelmer micelles have a higher transfection rate compared to "naked", unpacked spiegelmers (Fig. 12) The transfection efficiency was in this connection >95% of all cells and had no influence on the morphology of the cells. The 5'-FITC-coupled spiegelmer was mainly to be found in the cytosol and associated with the plasma membrane. The point-like distribution indicates an inclusion in compartments and the diffuse pattern points to released spiegelmer. Only a slight spiegelmer signal could be detected in the cell nucleus.
3o6 Rel ase of Sp~~~~lmer The point-like distribution of the spiegelmer in the cytosol and perinuclear space of the H578T cells points to an accummulation in compartments of the cells, for example endosomes. To check the release of the spiegelmers from these compartments the distribution pattern of individual, greatly enlarged cells was analysed (Fig. 13), In addition to the point-like localisation of the spiegelmers, a diffuse distribution pattern in the cytosol and on the plasma membrane was detected, which points to the endosomal release of the spiegelmerso This pattern was not found in the case of "naked" spiegelmers.
~~ ple 4o Bio~~tivaty is~ vivo 401 Pr liferation Assay without PEI
Effect on the proliferation of MCF-7 cells The potential role of HMGAla/b in cell division was investigated by means of proliferation assays. First of all spiegelmer was added in a high dose as "naked" nucleic acid to the cell culture medium and the growth of the cells was followed over time The breast cancer cell line MCF-7 was used as model, since in these cells a smaller (antagonising) expression of HMGAla/b was found, and the role of HMGA1a/b in the proliferation of these cells had already been described in the literature. Reeves et alo (Reeves-R et ale, Molecular and Cellular Biology, Jan 2001, p575-594) showed that the over-expression of HMGAla/b in MCF-7 cells leads to an increased proliferation, and the inhibition of HMGA1a/b by means of expressed antisense constructs inhibits the proliferation of MCF-7 cells.
Execution/Method 0e5 x 104 MCF-7 cells (ATCC) were seeded out in 96-well plates (Costar) with a flat, transparent base and cultured for 16-24 hours in 100 }zl RPMI 1640 medium with 10% foetal calf serum (FCS)o The cells were then washed with PBS and cultured for a further 48 hours with standard cell culture medium with the direct addition of sterile filtered spiegelmer. This was followed by the addition of 10 l of a resazurin solution (0.44 mM in PBS) to the respective batches and further incubation for 2 hours at 37 C. The transformation of resazurin by the cell metabolism correlates directly with the number of cells. The change in colour was measured in a Fluostar Optima multidetection plate reading device (BMG) (emission 544 nm, extinction 590 nm)o Each value was determined three times per experiment and referred to the values of untreated control cells.
Result NOX-A inhibited after two days in a dose-dependent manner the proliferation of MCF-7 cells (n=12) (Fig. 14), The maximum inhibition of the proliferation to cae 30% of the value of untreated cells was found at 40 ~aMo At concentrations up to 40 ~iM no non-specific effect of the inverse control spiegelmer was found.
4 2 Proliferation Assay with PEI
Effect of spiegelmer micelles on the proliferation of H-1299 cells Execution/Method 1x104 NCI-H-1299 cells (lung carcinoma cells; ATCC) were seeded out in in 24-well plates (Costar) with a flat, transparent base and cultured for 16-24 hours in 1 ml RPMI
1640 medium with a 10% FCSa The cells were then washed twice with PBS and cultured for a further three days with cell culture medium containing 1% FCS and spiegelmer micellles> The packing of sterile, PEGylated spieglemer was carried out beforehand in PBS by adding 25 kDa cross-branched polyethyleneimine (PEI) (Sigma) in a ratio of the absolute nitrogen fraction of the PEI to the absolute phosphate of the ribonucleic acid backbone of 20501 (N/P
205), The sterile spiegelmer was used in a concentration of 30 liP'! and after the addition of the PEI was incubated for 30-60 minutes at room temperature. The spiegelmer micelles were then diluted to 1 uM with cell culture medium containing 1% FCS, added directly to the washed cells, and incubated for three days at 37 C.
This was followed by addition of 100 ul resazurin solution to the respective batches and further incubation for 2 hours at 37 Co The transformation of resazurin by the cell motabolism correlates directly with the number of cells.
100 ul were removed from the batches, transferred to a 96-well plate, and the colour change was measured in a Fluostar Optima multidetection plate reading device (BMG) (emission 544 nm, extinction 590 nm)e Each value was determined twice per experiment and referred to the values of untreated control cells.
Result The use of PEI (N/P 2.5) with 1~aNt spiegelmer did not initially have any effect on cell proliferation. By reducing the amount of FKS in the cell culture medium to below 1% it was shown that the transfection with spiegelmer micelles has an influence on the proliferation of H-1299 cells, which was not previously visible with 10% FKS (Fig 15)o Possibly FKS stimulates the proliferation to such an extent that the slight effect could not be observed. The reduction of the FKS concentration in MCF-7 cells lead to the death of the cells over a period of 3 days.
4o ~ Inhibition Tumour Marker cdc25& (with PEI) Effect on the HMGAla/b-mediated regulation of cell cycle factors, in the example of the potential oncogene cdc25a.
Reeves et al, (Molecular and Cellular Biology, Jan 2001, p575-594) showed by means of cDNA arrays through over-expression of HMGAla/b in MCF-7 cells that HMGAla/b induces the expression of a large number of genes. At the same time cell cycle factors and growth factors such as for example cdc25a, identified as a potential oncogene (cell division cycle 25a phosphotase), which plays a decisive role in the control of the transition from the G1 phase to the S phase of the cell cycle, are over-expressed by a factor of up to 100. The activation of such control points leads after inhibition of the cell cycle progression either to the transcription of genes which are involved in DNA
repair or, if the DNA damage is irreparable, to the induction of apoptosis. As cell culture test system H-1299 cells were chosen for this purpose, since they have already exhibited an increased expression of HMGAla/be Execution/Method 1x104 H-1299 cells were seeded out in 24-well plates (Costar) with a flat, transparent floor and cultured for 16-24 hours in RPMI 1640 medium containing 10% FCS (volume 1 ml). The cells were then washed twice with PBS and cultured for a further three days in cell culture medium with spiegelmer micelles containing 10% FCSa The packing of sterile, PEGylated spiegelmer was carried out beforehand in PBS by adding 25 kDa cross-branched polyethyleneimine (PEI) (Sigma) in a ratio of the absolute nitrogen fraction of the PEI to the absolute phosphate of the ribonucleic acid backbone of 2,5e1 (N/P 2,5). The sterile spiegelmer was used in a concentration of 30 ~xM and, after adding PEI, was incubated for 30-60 minutes at room temperature. The spiegelmer micelles with cell culture medium containing 1%
FCS were then diluted to the respective concentration, added directly to the washed cells, and incubated for three days at 37 C. The cells were washed twice with PBS and harvested by means of a cell scraper. The mRNA of the cells was then isolated from the cells by means of Roti-Quick-Kits (Roth, CateNo,979,1) and 0.2-1 ug of total RNA
was used as template for the PCR of cdc25a and GAPDIHe The primers for the amplification of GAPDH were as follows:
forward primer: 5'-ACATGTTCCAATATGATTCC-3' and reverse primer: 5-TGGACTCCACGACGTACTCAG-3' at an annealing temperature of 51 C, and for the amplification of cdc25ao forward primer: 5'-GAGGAGTCTCACCTGGAAGTACA-3' and reverse primer 5'-GCCATTCAAAACCAGATGCCATAA-3' at an annealing temperature of 59 C, The PCR conditions were as follows:
002-0.75 ~aN! primer, 1,5 mM MgCl2 and 0.2 mM dNTPso Every two PCR cycles an aliquot of 5 ul was quantified by PicoGreen and evaluated by correlation with GAPDH as load control: for this, in the first step for each investigated sample the so-called "crossing point" value (CP) of the reference gene is subtracted from the CP value of the gene being investigated (dCP=CP target gene minus CP reference gene). CP is defined as the number of PCR cycles that are required in order to reach a constantly defined fluorescence value. The same amount of newly synthesised DNA is found at the CP in all reaction vessels. After this standardisation the dCP value of a control (in this case GAPDH) is subtracted from the dCP value of the experimently treated samples; one arrives at the so-called "delta-delta CT" calculation model. The relative expression difference of a sample between the treatment and the control (ratio), normalised to the reference gene and referred to a standard sample, is found from the arithmetic formula 2 ddcP
dCP=CP (cdc25a)- CP (GAPDH) ddCP= dCP (treatment spiegelmer NOX-A)- dCP(control: PBS or NOX-A inverse) Rat1o=2-ddCP
Result cdc25a and HMGAla/b were detected in MCF-7 and H 1299 cells by means of RT-PCR. MCF-7 cells showed with a low expression of HMGAla/b also a low expression of cdc25a, whereas HMGAla/b and cdc25a were strongly expressed in H-1299 cells. The transfection of H-1299 cells for two days with HMGAla/b-binding spiegelmers led to a significant, dose-dependent reduction of the expression of cdc25a mRNA
(Fig, 16 and Figo17)o Up to a concentration of 4liM a control speigelmer exhibited no non-specific effect, neither on the GAPDH nor on the cdc25a mRNA expression. From this it can be concluded that the HMGAla/b-induced over-expression of the potential oncogene cdc25a can be inhibited by means of spiegelmers, ~xaLmple 5. Effectav ness Studyo Xamograft Model Effect of spiegelmers on tumour growth in vivo In order to test the hypothesis that HMGAla/b-binding spiegelmers inhibit the growth of tumours in vivo, a xenograft model was developed for the strongly HMGAIa/b-expressing pancreatic carcinoma cells PSN-1. On the basis of this model a therapeutic experiment was carried out with 2 mg/kg NOX-A spiegelmer micelles at a N/P of 2e5 (see Example 3, paragraph 3,3).
Execution/Method Male naked mice (NMRI: nu/nu) (group size n = 8) were subcutaneously injected in the side with in each case 10' PSN-1 cells (ECACC) and the tumour growth was observed over 22 days. The animals had a mean weight of 25-27 g and were 6-8 weeks old. The active spiegelmer NOX-A-3'PEG and the inverse control spiegelmer in I1W-3'PEG were packed in micelles as described above by adding PEI in a N/P ratio of 2>5. 100 u1 of the spiegelmer micelle suspension (corresponding to 3.46 nmole/animal or 2 mg/kg) were in each case subcutaneously injected daily into the vicinity of the tumour. The tumour volume and bodyweight were measured three times a week. The animals were sacrificed on day 22 and the distribution of NOX-A in the plasma, liver, kidneys and tumour was quantified.
For this purpose the tissues were homogenised in hybridisation buffer (0.5x SSC pH 7.0; 0>5% (w/v) SDSarcosinate) and centrifuged for 10 mins at 4000x g. The supernatants obtained were stored at -20 C until further use.
The amount of spiegelmer in the plasma samples and in the tissue homogenates was investigated by means of a hybridisation assay (Drolet et al> (2000) Pharm.Res, 1701503), The hybridisation assay is based on the following principle o the spiegelmer to be detected (L-RNA
molecule) is hybridised on an immobilised L-DNA
oligonucleotide probe ( = capture probe NOX-A; in this caseo 5'- CCCATATCCACCCACGTATCAGCCTTTTTTTT-NH2 -3';
complementary to the 5' end of HMGAla/b-NOX-A) and detected with a biotinylated detection L-DNA probe (= detector probe NOX-A; in this caseo 5'-biotin-TTTTTTTTGGCTGAAACCACCCACATGG-3'; complementary to the 3' end of HMGAla/b-NOX-A)e For this purpose a streptavidin alkaline phosphatase conjugate is in a further step bound to the complex. After adding a chemiluminescence substrate light is generated and measured in a luminometero Immobilisation of the oligonucleotide probe: 100 pl of the capture probe (0a75 pmole/ml in coupling buffero 500 mM
Na2HP04, pH 8 0 5, 0.5 mM EDTA) were transferred to each well (depression in a plate) in DNA-BIND plates (Corning Costar) and incubated overnight at 4 C. The probe was then washed three times with 200 ~al of coupling buffer each time and incubated for 1 hourat 37 C with in each case 200 ul of blocking buffer (0050 (w/v) BSA in coupling buffer)e After washing again with 200 ul of coupling buffer and 3x 200 ul hybridisation buffer the plates can be used for the detection.
Hybridisation and detection: 10 ~il EDTA plasma or tissue homogenate were mixed with 90 ul of detection buffer (2 pmole/lil of detector probe in hybridisation buffer) and centrifuged. Further purifications were carried out as necessary. The batches were then denatured for 10 mins at 95 C, transferred to the suitably prepared DNA-BIND wells (see above) and incubated for 45 mins at ca. 40 Co The following wash steps were then carried out: 2x 200 u1 hybridisation buffer and 3x 200 ~i1 lx TBS/Tween 20 (20 mM
Tris-Cl pH 706, 137 mM NaCl, 0.1% (v/v) Tween 20), 1 u1 streptavidin alkaline phosphatase conjugate (Promega) was diluted with 5 ml of TBS/Tween 20. 100 ul of the diluted conjugate were added to each well and incubated for 1 hourat room temperature. The following wash steps were then carried outo 2x 200 lil TBS/Tween 20 and 2x 200 ~il of assay buffer (20 mM Tris-Cl pH 9.8, 1 mM MgC12), 100 p1 of CSPD Ready-To-Use Substrate" (Applied Biosystems) were then added, incubated for 30 mins at room temperature, and the chemiluminescence was measured in a Fluostar Optima multidetecton plate reading device (BMG), Result In a preliminary experiment it was shown that H-1299 cells after transplanting as a tumour grew significantly more slowly than PSN-1, and on comparing the individual animals exhibited an inhomogeneous tumour growth and therefore appeared unsuitable as xenograft model for a treatment study. PSN-1 cells exhibited an aggressive tumour growth within 22 days. It was shown that NOX-A nicelles at a dose of 2 mg/kg reduced the growth of PSN-1 tumours significantly compared to the PBS control (Figo 18). The weight of the animals was unaffected by the treatment with spiegelmer micelles. The control spiegelmer did not exhibit any non-specific inhibition of the tumour growth and likewise had no effect on the weight of the animals.
The differences in tumour sizes were, from day 10 of the treatment with NOX-A3'PEG micelles, significant or highly significant compared to untreated animals (PBS control (student's t-test)o The end point analysis after 22 days showed a highly significant, specific reduction in tumour growth (p=0.0095 compared to PBS and p=0.022 compared to inverse control spiegelmer) (Fig. 19) Mice treated with PBS showed an average tumour growth of 2,5 cm3, animals treated with controlled spiegelmer had an average tumour volume of 206 cm3 and animals treated with NOX-A had an average tumour volume of 1,2 cm3 after 22 days (box-and-whisker analysis)e This corresponds to a reduction of the tumour growth of more than 50%.
The analysis of the tissue distribution of NOX-A showed a high concentration in the tumour (Figa 20), Ex le 6o Comparis n of the in vivo Tissue Distribut n of Pack cl and Unpacked Spiagalmer In order to check the efficient incorporation of spiegelmer micelles, a non-functional spiegelmer (Proof Of Concept =
POC) was PEGylated at the 3' end with PEG 2 kDa and packed with a nitrogen/phosphate ratio (N/P) of 205 in micelles (see Example 3, paragraph 3,3)> In a similar way to the protocol described in Example 5, this approach was adopted for spiegelmer packed in micelles as well as for free, unpacked spiegelmer, Ex cuta n/meth d Male naked mice (NMRI; nu/nu) (group size n = 8) were in each case injected subcutaneously in the side with 10' PSN-1 cells (ECACC) and the tumour growth was observed over 25 days. The animals had a mean weight of 25-27 g and were 6-8 weeks old. The non-functional spiegelmer POC-3'PEG was packed in micelles by adding PEI in a N/P ratio of 2e5, as described above. Spiegelmer POC-3'PEG not packed in micelles served as control for the incorporation not mediated by PEI. 100 ~1l of the spiegelmer-micelle suspension or spiegelmer solution (corresponding to 1500 nmole/kg and 2000 nmole/kg) were injected daily subcutaneously into the vicinity of the tumour. The tumour volume and body weight were measured three times a week.
24 and 96 hours after the last injection two animals from each group were sacrificed and the distribution of POC-3'PEG (packed/unpacked) in the plasma, brain, heart, lungs, liver, kidneys, gallbladder, pancreas and tumour was quantified, For this purpose the tissue was homogenised in hybridisation buffer (0,5x SSC pH 700; 0,5% (w/v) SDSarcosinate) and centrifuged for 10 mins at 4000 x g.
The resultant supernatants were stored at -20 C until further use.
The amount of spiegelmer in the plasma samples and in the tissues homogenates was investigated by means of a hybridisation assay (Drolet et alo (2000) Pharm,Reso 17:1503). The assay is based on the following principlee the spiegelmer (L-RNA molecule) to be detected is hybridised on an immobilised L-DNA oligonucleotide probe (=
capture probe POC; hereo 5'- NH2(C7)-TTTTTTTTTAGCTCTGCACAGCGCT-3'; complementary to the 3' end of POC) and is detected with a biotinylated detection L-DNA probe (= detector probe POC; hereo 5'-CCGCATCAGACCGAGTTTCCTTATTTTTTTT-Eiotin-3'; compelementary to the 5' end of POC) . For this, a streptavidin alkaline phosphatase conjugate was bound in a further step to the complex. After addition of a chemiluminescence substrate, light is generated and measured in a luminometero Immobilisation of the oligonucleotide probe: 100 pl of the POC capture probe (0075 pmole/ml in coupling buffero 500 mM NaZHPO4 pH 8,5, 005 mM EDTA) were transferred to each well (depression in a plate) in DNA-BIND plates (Corning Costar) and incubated overnight at 4 Ce The probe was then washed three times with 200 ul of coupling buffer and incubated for 1 hourat 37 C with 200 ul of blocking buffer (005% (w/v) BSA in coupling buffer), After washing again with 200 pl of coupling buffer and 3x 200 pl of hybridisation buffer, the plates can be used for the detection.
Hybridisation and detection: 10 ul of EDTA plasma or tissue homogenate were mixed with 90 ul of detection buffer (2 pmole/ul POC detector probe in hybridisation buffer) and centrifuged. Further purifications were carried out as necessary. The batches were then denatured for 10 mins at 95 C, transferred to the suitably prepared DNA-BIND wells (see above), and incubated for 45 mins at ca. 40 Co The following wash steps were then carried out: 2x 200 pl of hybridisation buffer and 3x 200 ul 1x TBS/Tween 20 (20 mM
Tris-Cl pH 7.6, 137 mM NaCl, 0.1% (v/v) Tween 20)m 1 ul of streptavidin alkaline phosphatase conjugate (Promega) was diluted with 5 ml of lx TBS/Tween 20. 100 ul of the dilute conjugate were added to each well and incubated for one hour at room temperature. The following wash steps were then carried out: 2x 200 pl of lx TBS/Tween 20 and 2x 200 pl of lx assay buffer (20 mM Tris-Cl pH 9.8, 1 mM
MgCl2), 100 jil of CSPD "Ready-To-Use Substrate" (Applied Biosystems) were then added, incubated for 30 mins at room temperature, and the chemiluminescence was measured in a Fluostar Optima multidetection plate reading device (EMG)o Result The analysis of the weight distribution of the non-functional spiegelmer POC-3'PEG, which was packed in micelles, showed after 24 hours a significantly higher concentration in the tumour tissues (240925 +/-13,301 pmole/mg) compared to the unpacked spiegelmer (0,840 +/- 0a255 pmole/mg) (Fig. 21 A)o Whereas the concentration of the packed spiegelmer had halved (110325 +/- 70050 pmole/mg) after a further three days (96 hours), only a very small amount of the unpacked spiegelmer could be detected (00120 +/- 00057 pmole/mg), The plasma level of unpacked spiegelmer (20950 +/-00438 pmole/ml) after 24 hours was comparable to that of the PEI-packed spiegelmer (10930 +/- 2,729 pmole/ml)o After 96 hours clear differences were found, in which about four times the amount of packed spiegelmer compared to the unpacked spiegelmer was detected.
A slight accummulation in the kidneys was observed after 24 hours for both formulations, whereas a slight accummulation in the liver and gallbladder was found only for unpacked spiegelmer. After 96 hours, for both formulations only minor amounts of spiegelmer were detected in the liver and kidneys. On the other hand, slightly raised values were found in the gallbladder and pancreas (but with a high standard deviation) for packed spiegelmer compared to unpacked spiegelmer.
To summarise, compared to the weight distribution (24 and 96 hours after the last injection) of spiegelmers in the presence and absence of PEI, it was found that spiegelmer micelles have a significantly prolonged residence time in the plasma and tumour compared to unpacked material (Fig.
21B) and thus represent a promising approach to the use of spiegelmers directed against intracellular target molecules.
The following citations are incorporated herein by way of reference.
Abe et alo J Gastroenterol. 2003 ; 38, 1144-9 Abe N et al (1999). Cancer Res 59:1169-1174 Abe N et al (2000). Cancer Res 60:3117-3122 Abe N et al (2002). Pancreas 25:198-204 Anand A & Chada K(2000). Nat Genet 24 :377-380 Balcercak et al, Postepy Biochem, 2005; 51(3)0261-9 Balcerczak et al Pathol Res Pract 2003; 199, 641-6 Baldassarre G et al (2003)< Mol Cell Biol 23e2225-2238 Bandiera S et al (1998)o Cancer Res 58:426-431 Battista S et al (1998) Oncogene 17:377-385 Belge G et al (1992). Cell Biol Int Rep 16 :339-347 Berlingieri MT et al. (1995). Mol Cell Biol 15:1545-1553 Birdsal SH et al (1992), Cancer Gen Cytogen 60:74-77 Bridge JA et al (1992). Cancer Detect Prevent 16:215-219 Briese et al. Int. J Gynevol Pathol 2006 Jan, 65-9 Bullerdiek J et al (1987). Cytogenet Cell Genet 45 :187-190 Bussemakers MJG et al (1991), Cancer Res 51 :606-611 Chada K et al (2004). US Patent 6,756,355 Chang et al. Dig Dis Sci, 2005 Oct, 1764-70 Chau KY et al (2000), J Neurosci 20 :7317-7324 Chau KY et al (2003)o Mol Med 9 :154-165 Chen et al. Cancer Epidemiol Biomarkers Prev 2004 Jan, 30-3 Chiappetta et al. Clin Cancer Res. 2004 Nov, 7634-44 Chiappetta G et al (1995). Oncogene 10:1307-1314 Chiappetta G et al (1996). Oncogene 13:2439-2446 Chiappetta G et al (1998)a Cancer Res 58:4193-4198 Chiappetta G et al (2001)e Int J Cancer 91:147-151 Chin MT et al (1999)o J Mol Cell Cardiol 31 :2199-2205 Chuma et al, Keio J Med 2004 Jun, 90-7 Cuff CA et al (2001)a J Clin Invest 108 :1031-1040 Czyz et alo Langenbecks Arch Surg 2004, Jun, 193-7 Dal Cin P et al (1993). Genes Chromosomes Cancer 8:131-133 Dal Cin P et al (1995)o Cancer Res 55:1565-1568 Diana F et al (2001)o J Biol Chem 276 :11354-11361 Dolde CE et al (2002)o Breast Cancer Res Treat 71 :181-191 Donato et al. Oncol Rep 2004 Jun, 1209-13 Du W et al (1993)o Cell 74 :887-898 Evans A et al (2004). J Surg Oncol 88 :86-99 Fedele M et al (1996)o Cancer Res 56:1896-1901 Fletcher AJ et al (1991)o Am J Pathol 138:1199-1207 Fletcher AJ et al (1992)e Cancer Res 52 :6224-6228 Fletcher AJ et al (1995)o Genes Chromosomes Cancer 12:220-Flohr et al. Histol Histopathol 2003 Oct, 999-1004 Foster LC et al (1998)o J Biol Chem 273 :20341-20346 Foster LC et al (2000)e FASEB J 14 :368-378 French et al. Mol Cell Biol 1996, 5393-9 Friedman M et al (1993)o Nucleic Acids Res 21:4259-4267 Giancotti V et al (1987), EMBO J 6:1981-1987 Giancotti V et al (1989)o Exp Cell Res 184:538-545 Giancotti V et al. (1993). Eur J Biochem 213:825-832 Giannini G et al (1999). Cancer Res 59:2484-2492 Giannini G et al (2000)o Br J Cancer 83:1503-1509 Grosschedl R et al (1994), Trends Genet 10 :94-100 Heim S et al (1988). Cancer Genet Cytogenet 32:13-17 Henderson et al J Virol 2000, 10523-34 Hindmarsh et al. J. Virol 1999, 2994-3003 Holth LT et al (1997). DNA Cell Biol 16:1299-1309 Huth JR et al (1997). Nat Struct Biol 4:657-665 Jain M et al (1996)o J Clin Invest 97 :596-603 Johansson N et al (1992), Cancer Genet Cytogenet 60 :219-Johansson M et al (1993)e Br J Cancer 67 :1236-1241 Johnson KR et al (1990). Exp Cell Res 187:69-76 Kazmierczak B et al (1995), Cancer Res 55 :2497-2499 Kettunen et al. Cancer Genet Cytogenet 2004 Mar, 98-106 Kim DH et al (1999), Int J Cancer 84 :376-380 Klotzbucher M et al (1999), Am J Pathol 155:1535-1542 Kottickal LV et al (1998), Biochem Biophys Res Commun 242 :452-456 Lee et al. Int J ncol 2004, Apr, 847-51 Leger et al. Mol Cell Biol 1995, 3738-47 Leman ES et al (2003)m J Cell Biochem 88 :599-608 Li et al J. Virol 1998, 2125-31 Li et al, Am J Dermatopathol 2004 Aug, 267-72 Mandahl N et al (1987)o Int J Cancer 39 :685-688 Mandahl N et al (1989). Cancer 65 :242-248 Mandahl N et al (1993). Cancer 71 : 3009-3013 Mark J & Dahlenfors R(1986)a Anticancer Res 6:299-308 Mark J et al (1980)o Cancer Genet Cytogenet 2 :231-241 Mark J et al (1988). Anticancer Res 8:621-626 Masciullo et al Carcinogenesis 2003 Jul, 1191-8 Masciullo V et al (2003). Carcinogenesis 24:1191-1198 Melillo RM et al (2001)o Mol Cell Biol 21:2485-2495 Nam et al Histopathology 2003 May, 466-71 Nestl A et al (2001). Cancer Res 61:1569-1577 Noguera R et al (1989). Virchows Arch A Pathol Anat Histopathol 415:377-382 Ogram SA et al (1997). J Biol Chem 270:14235-14242 Ozisik YY et al (1993). Cancer Genet Cytogenet 79 :136-138 Panagiotidis et al Virology 1999, 64-74 Pellacani A et al (1999)e J Biol Chem 274:1525-1532 Peters et al. Cancer Epidemiol Biomarkers Prev 2005, Jul 17, 17-23 Pierantoni et al. Biochem J 2003 May, 145-50 Ram TG et al (1993). Cancer Res 53 :2655-2660 Reeves R & Beckerbauer K (2002). Progr Cell Cycle Res Reeves R & Beckerbauer L(2001). Biochim Biophys Acta 1519:13-29 Reeves R & Nissen MS (1990). J Biol Chem 265:8573-8582 Reeves R et al (2001)o Mol Cell Biol 21:575-594 Rogalla P et al (1996), Am J Pathol 149:775-779 Rohen C et al (1995). Cancer Genet Cytogenet 84e82-84 Sarhadi et al. J Pathol Mar 6 2006, Epup ahead of print Sato et al. Pathol Res Pract, 2005; 201, 333-9 Scala S et al (2000). Proc Natl Acad Sci USA 97 :4256-4261 Schaefer et al. Mol Cell Biol. 1997, 873-86 Schlueter et al. Pathol Res Pract, 2005; 201, 101-7 Schoenmakers EFPM et al. (1995), Nat Genet 10:436-444 Sgarra R et al (2003). Biochemistry 42 :3575-3585 Sgarra R et al (2004). FEBS Lett 574 :1-8 Sreekantaiah C et al (1990). Cancer Genet Cytogenet 45 :81-Sreekantaiah C et al (1991). Cancer Res 5 :422-433 Staats B et al (1996)a Breast Cancer Res Treat 38 :299-303 Tamimi Y et al (1996). Br J Cancer 74 :573-578 Tapasso F et al (2004). Cancer Gene Ther 11 :633-641 Tarbe N et al (2001). Anticancer Res 21:3221-3228 Thanos D & Maniatis T(1992). Cell 71:777-789 Turc-Carel C et al (1986). Cancer Genet Cytogenet 23 :283-Vallone D et al (1997). EMBO J 16:5310-5321 Van Maele et al. , Trends Biochem Sci 2006, 98-105 Vanni R et al (1988). Cancer Genet Cytogenet 32:33-34 Vanni R et al (1993). Cancer Genet Cytogenet 68032-33 Walter TA et al (1989). Cancer Genet Cytogenet 41 :99-103 Wolffe AP (1994). Science 264:1100-1101 Wood LJ et al (2000a). Cancer Res 60:4256-4261 Wood LJ et al (2000b). Mol Cell Biol 20 :5490-5502 Xiang YY et al (1997). Int J Cancer 74 :1-6 Zhou X et al (1995). Nature 376 :771-774 The features of the invention disclosed in the preceding description, claims and drawings can be essential both individually as well as in any combination for the implementation of the invention in its various embodiments.
DEMANDES OU BREVETS VOLUMINEUX
LA PRESENTE PARTIE DE CETTE DEMANDE OU CE BREVETS
COMPREND PLUS D'UN TOME.
NOTE: Pour les tomes additionels, veillez contacter le Bureau Canadien des Brevets.
JUMBO APPLICATIONS / PATENTS
THIS SECTION OF THE APPLICATION / PATENT CONTAINS MORE
THAN ONE VOLUME.
NOTE: For additional volumes please contact the Canadian Patent Office.
Claims (139)
1. Use of a L-nucleic acid as intracellularly active agent.
2. Use according to claim 1, characterised in that the L-nucleic acid is a spiegelmer.
3. Use according to one of claims 1 and 2, characterised in that the L-nucleic acid interacts with an intracellular receptor.
4. Use according to claim 3, characterised in that the intracellular receptor is selected from the group comprising molecular receptors, enzymes, chaperone molecules, signal peptides, intracellular structures and metabolic intermediates.
5. Use according to claim 3, characterised in that the intracellular receptor is selected from the group comprising polypeptides, carbohydrates, nucleic acids, lipids and combinations thereof.
6. Use according to one of claims 3 to 5, characterised in that the L-nucleic acid interacts with an intracellular receptor within a cell.
7. Use according to one of claims 3 to 6, characterised in that the intracellular receptor is selected from the group comprising transcription factors and DNA-binding proteins binding an AT hook.
8. Use according to claim 7, characterised in that the intracellular receptor is selected from the group comprising HMG proteins, preferably from the group comprising HMGA1, HMGA1a, HMGA1b and HMGA2.
9. A method for binding an intracellular receptor comprising:
- providing a cell containing at least one intracellular receptor, - providing a L-nucleic acid, and - incubating the cell with the L-nucleic acid.
- providing a cell containing at least one intracellular receptor, - providing a L-nucleic acid, and - incubating the cell with the L-nucleic acid.
10. The method according to claim 9, characterised in that the incubation takes place under conditions so that the L-nucleic acid binds to the intracellular receptor in the cell.
11. The method according to claim 9 and 10, characterised in that the L-nucleic acid is a spiegelmer.
12. The method according to one of claims 9 to 11, characterised in that after incubating the cell with the L-nucleic acid, it is determined whether a binding, in particular an intracellular binding, of the L-nucleic acid with the intracellular receptor has taken place.
13. The method according to one of claims 9 to 12, characterised in that the intracellular receptor is selected from the group comprising molecular receptors, metabolic intermediates and enzymes.
14. The method according to one of claims 9 to 13, characterised in that the intracellular receptor is selected from the group comprising polypeptides, carbohydrates, nucleic acids, lipids and combinations thereof.
15. The method according to one of claims 9 to 14, characterised in that the intracellular receptor is selected from the group comprising transcription factors and DNA-binding proteins binding an AT hook,
16. The method according to claim 15, characterised in that the intracellular receptor is selected from the group comprising HMG proteins, preferably selected from the group comprising HMGA1, HMGA1a, HMGA1b and HMGA2.
17. Use of a L-nucleic acid for the manufacture of a medicament for the treatment and/or prevention of a disease, in which the target molecule of the medicament is an intracellular target molecule.
18. Use according to claim 17, characterised in that the intracellular receptor is selected from the group comprising molecular receptors, enzymes, chaperone molecules, signal peptides, intracellular structures and metabolic intermediates.
19. Use according to claim 17, characterised in that the intracellular receptor is selected from the group comprising polypeptides, carbohydrates, nucleic acids, lipids and combinations thereof.
20. Use according to one of claims 17 to 19, characterised in that the target molecule is selected from the group comprising transcription factors and DNA-binding proteins binding an AT hook.
21. Use according to claim 20, characterised in that the target molecule is selected from the group comprising HMG proteins, and is preferably selected from the group comprising HMGA1, HMGA1a, HMGA1b and HMGA2.
22. Use according to one of claims 20 and 21, characterised in that the disease is selected from the group comprising tumour diseases, virus infections and arteriosclerosis,
23. Use according to claim 22, characterised in that the tumour disease is selected from the group comprising mesenchymal tumours, epithelial tumours, benign tumours, malignant tumours and metastasising tumours,
24. Use according to one of claims 20 to 23, characterised in that the target molecule is HMGA and the disease is selected from the group comprising cancers of the prostate, pancreas, thyroid, cervix, stomach, breast, colon/rectum, ovaries; neuroblastomas; lymphomas, uterine leiomyomas; lipomas; endometrial polyps;
chondroid hamartomas of the lungs; pleomorphic adenomas of the salivary glands; haemangiopericytomas;
chondromatous tumours; aggressive angiomyxomas;
diffuse astrocytomas; osteoclastomas; skin cancer;
Burkitt's lymphoma; Lewis lung cancer; leukaemia; non-small-cell lung carcinoma; as well as in each case metastases and/or metastasising forms thereof.
chondroid hamartomas of the lungs; pleomorphic adenomas of the salivary glands; haemangiopericytomas;
chondromatous tumours; aggressive angiomyxomas;
diffuse astrocytomas; osteoclastomas; skin cancer;
Burkitt's lymphoma; Lewis lung cancer; leukaemia; non-small-cell lung carcinoma; as well as in each case metastases and/or metastasising forms thereof.
25. Use according to claim 22, characterised in that the arteriosclerosis is triggered or caused by formation of arteriosclerotic plaques mediated by HMGA1, HMGA1a, HMGA1b and/or HMGA2.
26. Use according to one of claims 17 to 25, characterised in that the intracellular target molecule is present intracellularly.
27. Use of a L-nucleic acid for the manufacture of a diagnostic agent for diagnostic purposes, the target molecule of the diagnostic agent being an intracellular target molecule.
28. Use according to claim 27, characterised in that the intracellular receptor is selected from the group comprising molecular receptors, enzymes, chaperone molecules, signal peptides, intracellular structures and metabolic intermediates.
29. Use according to claim 27, characterised in that the intracellular receptor is selected from the group comprising polypeptides, carbohydrates, nucleic acids, lipids and combinations thereof.
30. Use according to one of claims 27 to 29, characterised in that the target molecule is selected from the group comprising transcription factors and DNA-binding proteins binding an AT hook.
31. Use according to claim 30, characterised in that the target molecule is selected from the group comprising HMG proteins, and is preferably selected from the group comprising HMGA1, HMGA1a, HMGA1b and HMGA2.
32. Use according to claims 30 and 31, characterised in that the disease is selected from the group comprising tumour diseases, virus infections and arteriosclerosis.
33. Use according to claim 32, characterised in that the tumour disease is selected from the group comprising mesenchymal tumours, epithelial tumours, benign tumours, malignant tumours and metastasising tumours.
34. Use according to one of claims 30 to 33, characterised in that the target molecule is HMGA and the disease is selected from the group comprising carcinomas of the prostate, pancreas, thyroid, cervix, stomach, breast, colon/rectum, ovaries; neuroblastomas; lymphomas, uterine leiomyomas; lipomas; endometrial polyps;
chondroid hamartomas of the lungs; pleomorphic adenomas of the salivary glands; haemangiopericytomas;
chondromatous tumours; aggressive angiomyxomas;
diffuse astrocytomas; osteoclastomas; skin cancer;
Burkitt's lymphoma; Lewis lung cancer; leukaemia; non-small-cell lung carcinoma; as well as in each case metastases and/or metastasising forms thereof.
chondroid hamartomas of the lungs; pleomorphic adenomas of the salivary glands; haemangiopericytomas;
chondromatous tumours; aggressive angiomyxomas;
diffuse astrocytomas; osteoclastomas; skin cancer;
Burkitt's lymphoma; Lewis lung cancer; leukaemia; non-small-cell lung carcinoma; as well as in each case metastases and/or metastasising forms thereof.
35. Use according to claim 32, characterised in that the arteriosclerosis is triggered by formation of arteriosclerotic plaques mediated by HMGA1, HMGA1a, HMGA1b and/or HMGA2,
36. Use according to one of claims 27 to 34, characterised in that the intracellular target molecule is present intracellularly.
37. A composition comprising a L-nucleic acid binding to an intracellular target molecule, and a delivery vehicle.
38. The composition according to claim 37, characterised in that the delivery vehicle is a delivery vehicle suitable for the intracellular delivery of the L-nucleic acid.
39. The composition according to claim 37 or 38, characterised in that the delivery vehicle is selected from the group comprising vehicles, conjugates and physical means.
40. The composition according to claim 39, characterised in that the delivery vehicle is a vehicle, wherein the vehicle is selected from the group comprising liposomes, nanoparticles, microparticles, cyclodextrins, or dendrimers, or is a vesicle consisting of polypeptides, polyethyleneimine and/or amphipathic molecules.
41. The composition according to claim 39, characterised in that the delivery vehicle is a conjugate, wherein the conjugate is a conjugate for receptor-mediated endocytosis, a conjugate with a fusogenic peptide, a conjugate with a signal peptide, a conjugate with a nucleic acid, preferably a conjugate with a spiegelmer, or is a lipophilic conjugate.
42. The composition according to claim 39, characterised in that the delivery vehicle is a physical means, wherein the means is preferably selected from the group comprising electroporation, iontophoresis, pressure, ultrasound and shock waves.
43. The composition according to claim 40, characterised in that the delivery vehicle comprises polyethyleneimine.
44. The composition according to claim 43, characterised in that the polyethyleneimine is a branched polyethyleneimine with a molecular weight of about 25 kDa.
45. The composition according to claim 43 or 44, characterised in that the polyethyleneimine forms a micelle or a micelle-like structure.
46. The composition according to one of claims 37 to 45, characterised in that the L-nucleic acid is a spiegelmer.
47. The composition according to claim 46, characterised in that the spiegelmer carries a modification, the modification being selected from the group comprising PEG residues.
48. The composition according to claim 47, characterised in that the PEG residue has a molecular weight of about 1,000 to 10,000 Da, preferably a molecular weight of about 1,500 to 2,500 Da and most preferably a molecular weight of about 2,000 Da.
49. The composition according to one of claims 47 and 48, characterised in that the modification is bound to the 5' terminus or to the 3' terminus of the L-nucleic acid.
50. The composition according to one of claims 46 to 49, characterised in that in the composition the ratio of the total number of nitrogen groups of the polyethyleneimine to the total number of phosphate groups of the nucleic acid contained in the composition is about 1 to 20, preferably about 1.5 to 10, more preferably about 2 to 5 and most preferably about 2 to 3.
51. The composition according to one of claims 37 to 50, characterised in that the composition provides the L-nucleic acid intracellularly.
52. A pharmaceutical composition comprising a composition according to one of claims 37 to 51, and a pharmaceutically acceptable carrier.
53. Use according to one of claims 1 to 8, wherein the L-nucleic acid is a composition according to one of claims 37 to 52.
54. The method according to one of claims 9 to 16, wherein the L-nucleic acid is a composition according to one of claims 37 to 52.
55. Use according to one of claims 17 to 26, wherein the L-nucleic acid is a composition according to one of claims 37 to 52.
56. Use according to one of claims 27 to 36, wherein the L-nucleic acid is a composition according to one of claims 37 to 52.
57. An HMGA-binding nucleic acid, characterised in that the nucleic acid comprises a section Box A1 and a section Box A2, wherein the section Box A1 and the section Box A2 are joined to one another by an intermediate section, and wherein Box A1 and Box A2 are selected individually and independently of one another from the group comprising GGGCG, GGGUG and GGGAG.
58. The HMGA-binding nucleic acid according to claim 57, characterised in that the intermediate section consists either of an intermediate section Z1 comprising six or seven nucleotides, or of an intermediate section Z2 comprising 12 to 25 nucleotides.
59. The HMGA-binding nucleic acid according to claim 57 or 58, characterised in that the nucleic acid at the 5' end of the section Box A1 comprises a first section, and at the 3' end of the section Box A2 comprises a second section, wherein preferably both sections independently of one another comprise in each case four to eight nucleotides.
60. The HMGA-binding nucleic acid according to claim 59, characterised in that the two sections are at least partly or completely hybridised with one another, the hybridisation extending over four to eight nucleotide pairs.
61. The HMGA-binding nucleic acid according to claim 59 or 60, characterised in that the nucleic acid at the 5' end of the section Box A1 comprises a section Helix A1, and at the 3' end of the section Box A2 comprises a section Helix A2, wherein preferably the section Helix A1 comprises four to eight nucleotides and preferably the section Helix A2 comprises four to eight nucleotides, and wherein preferably the section Helix A1 forms the first section at the 5' end of the section Box A1 or a part thereof, and wherein preferably the section Helix A2 forms the second section at the 3' end of the section Box A2 or a part thereof, the length of the section Helix A1 being independent of the length of the section Helix A2.
62. The HMGA-binding nucleic acid according to claim 61, characterised in that the sections Helix A1 and Helix A2 are at least partly or completely hybridised with one another, the hybridisation extending over four to eight nucleotide pairs.
63. The HMGA-binding nucleic acid according to claim 61 or 62, characterised in that between the 3' end of the section Helix A1 and the 5' end of the section Box A1 a section Helix B1 is arranged, and between the 3' end of the section Box A2 and the 5' end of the section Helix A2 a section Helix B2 is arranged, wherein preferably the length of the section Helix B1 and Helix B2 comprises in each case individually and independently a length of four to eight nucleotides.
64. The HMGA-binding nucleic acid according to claim 63, characterised in that the sections Helix B1 and Helix B2 are at least partly or completely hybridised with one another, the hybridisation extending over four to eight nucleotide pairs.
65. The HMGA-binding nucleic acid according to claim 63 or 64, characterised in that between the 3' end of the section Helix A1 and the 5' end of the section Helix B1 zero to five nucleotides are arranged.
66. The HMGA-binding nucleic acid according to claim 65, characterised in that between the 3' end of the section Helix Al and the 5' end of the section Helix B1 two nucleotides are arranged.
67. The HMGA-binding nucleic acid according to one of claims 63 to 66, characterised in that between the 3' end of the section Helix B2 and the 5' end of the section Helix A2 zero to six nucleotides are arranged.
68. The HMGA-binding nucleic acid according to claim 67, preferably insofar as this refers to claim 66, characterised in that between the 3' end of the section Helix B2 and the 5' end of the section Helix A2 a nucleotide is arranged.
69. The HMGA-binding nucleic acid according to one of claims 63 to 68, wherein the sum of the nucleotides of section Helix A1 and of section Helix B1 is 10 to 12 nucleotides, and the sum of the nucleotides of section Helix A2 and of section Helix B2 is 10 to 12 nucleotides.
70. The HMGA-binding nucleic acid according to claim 69, wherein the sum of the hybridised nucleotides from the hybridisation of section Helix A1 with section Helix A2 and of section Helix B1 with section Helix B2 is 10 to 12 nucleotide pairs.
71. The HMGA-binding nucleic acid according to one of claims 63 to 70, preferably 63 or 64, characterised in that the nucleic acid comprises no section Helix A1 and Helix A2, whereby the section Helix B1 is arranged at the 5' end of the nucleic acid and the Helix B2 is arranged at the 3' end of the nucleic acid, wherein preferably the length of the section Helix B1 and Helix B2 comprises in each case individually and independently a length of four to eight nucleotides.
72. The HMGA-binding nucleic acid according to claim 71, wherein the sections Helix B1 and Helix B2 are at least partly or completely hybridised with one another, the hybridisation extending over four to eight nucleotide pairs.
73. The HMGA-binding nucleic acid according to one of claims 61 and 62, characterised in that between the 3' end of the section Helix A1 and the 5' end of the section Box A1 one to five nucleotides are arranged, and between the 3' end of the section Box A2 and the 5' end of the section Helix A2 one to three nucleotides are arranged.
74. The HMGA-binding nucleic acid according to one of claims 63 to 72, characterised in that between the 3' end of the section Helix B1 and the 5' end of the section Box A1 two nucleotides are arranged, and between the 3' end of the section Box A2 and the 5' end of the section Helix B2 one to seven nucleotides are arranged.
75. The HMGA-binding nucleic acid according to one of claims 58 to 65, to claim 67 insofar as this refers to claims 63 to 65, to claims 69 and 70 insofar as these refer to claims 63 to 65 and 67, to claims 71 and 72 insofar as these refer to claims 63 to 65 and 67 and 69 and 70 or to claim 74, insofar as this refers to claims 63 to 65, 67, 69 to 72, in each case in the scope restricted herein, characterised in that the intermediate section Z1 comprises six or seven nucleotides.
76. The HMGA-binding nucleic acid according to claim 75, characterised in that the intermediate section Z1 comprises the sequence N1N2GN8N3N4N5, wherein N1 = U, C, A or G;
N2 = G or U;
N3 = U or C;
N4 = U or A;
N5 = G or A; and N8 = U or is absent.
N2 = G or U;
N3 = U or C;
N4 = U or A;
N5 = G or A; and N8 = U or is absent.
77. The HMGA-binding nucleic acid according to claim 76, characterised in that the nucleic acid comprises a section Box A1 and a section Box A2, wherein the 3' end of the section Box A1 is joined directly to the 5' end of the intermediate section Z1, and the 3' end of the intermediate section Z1 is joined directly to the 5' end of the section Box A2.
78. The HMGA-binding nucleic acid according to one of claims 75 to 77, in particular claim 77, characterised in that the nucleic acid comprises a section Helix B1 and a section Helix B2.
79. The HMGA-binding nucleic acid according to claim 78, characterised in that the sections Helix B1 and Helix B2 comprise in each case individually and independently of one another four to eight nucleotides, which are preferably completely or partly hybridised with one another.
80. The HMGA-binding nucleic acid according to one of claims 78 and 79, characterised in that between the 3' end of the section Helix B1 and the 5' end of the section Box A1 two nucleotides N6, N7 are arranged in the 5'-3'-direction, wherein N6 is G, A or U, and N7 is G or U.
81. The HMGA-binding nucleic acid according to one of claims 78 to 80, characterised in that between the 3' end of the section Box A2 and the 5' end of the section Helix B2 no nucleotide is arranged, or the nucleotide sequence GN y is arranged in the 5'-3'-direction, wherein Ny comprises zero to six nucleotides, preferably 0 or 6 nucleotides.
82. The HMGA-binding nucleic acid according to one of claims 75 to 81, characterised in that the nucleic acid comprises a section Helix A1 and a section Helix A2.
83. The HMGA-binding nucleic acid according to claim 82, characterised in that the sections Helix A1 and Helix A2 comprise in each case and independently of one another four to eight nucleotides, wherein preferably the sections Helix A1 and Helix A2 are completely or partly hybridised with one another.
84. The HMGA-binding nucleic acid according to one of claims 82 and 83, characterised in that between the 3' end of the section Helix A1 and the 5' end of the section Helix B1 a nucleotide sequence N x is arranged, wherein N x comprises zero to five nucleotides.
85. The HMGA-binding nucleic acid according to one of claims 82 to 84, characterised in that between the 3' end of the section Helix B2 and the 5' end of the section Helix A2 a nucleotide sequence N z is arranged, wherein N z comprises zero to six nucleotides.
86. The HMGA-binding nucleic acid according to one of claims 78 to 85, wherein the sum of the hybridised nucleotides from the hybridisation of section Helix A1 with section Helix A2 and of section Helix B1 with section Helix B2 is 10 to 12 nucleotide pairs.
87. The HMGA-binding nucleic acid according to one of claims 81 to 86, characterised in that between the 3' end of the section Box A2 and the 5' end of the section Helix B2 the nucleotide sequence GN y is arranged in the 5'-3'-direction, wherein N y comprises zero to six nucleotides, preferably 0 or 6 nucleotides.
88. The HMGA-binding nucleic acid according to claim 87, comprising the following structure wherein N1 = U, C, A or G;
N2 = G or U;
N3 = U or C;
N4 = U or A;
N5 = G or A;
N6 = G, A or U;
N7 = G or U;
N8 = U or no nucleotide;
N x = zero to five nucleotides;
N y = zero or six nucleotides; and N z = zero to six nucleotides;
wherein the section Box A1 and section Box A2 are in each case selected individually and independently of one another from the group of nucleotide sequences comprising GGGCG, GGGUG and GGGAG;
the section Helix A1 and the section Helix A2 comprise in each case individually and independently of one another four to eight nucleotides, wherein preferably the sections Helix A1 and Helix A2 are completely or partly hybridised with one another, and the sections Helix B1 and Helix B2 comprise in each case individually and independently of one another four to eight nucleotides, wherein preferably the sections Helix B1 and Helix B2 are completely or partly hybridised with one another and the hybridising region comprises four to eight nucleotides, and wherein the sum of the hybridised nucleotides from the hybridisation of section Helix A1 with section Helix A2 and of section Helix B1 with section Helix B2 is 10 to 12 nucleotide pairs.
N2 = G or U;
N3 = U or C;
N4 = U or A;
N5 = G or A;
N6 = G, A or U;
N7 = G or U;
N8 = U or no nucleotide;
N x = zero to five nucleotides;
N y = zero or six nucleotides; and N z = zero to six nucleotides;
wherein the section Box A1 and section Box A2 are in each case selected individually and independently of one another from the group of nucleotide sequences comprising GGGCG, GGGUG and GGGAG;
the section Helix A1 and the section Helix A2 comprise in each case individually and independently of one another four to eight nucleotides, wherein preferably the sections Helix A1 and Helix A2 are completely or partly hybridised with one another, and the sections Helix B1 and Helix B2 comprise in each case individually and independently of one another four to eight nucleotides, wherein preferably the sections Helix B1 and Helix B2 are completely or partly hybridised with one another and the hybridising region comprises four to eight nucleotides, and wherein the sum of the hybridised nucleotides from the hybridisation of section Helix A1 with section Helix A2 and of section Helix B1 with section Helix B2 is 10 to 12 nucleotide pairs.
89. The HMGA-binding nucleic acid according to claim 87 or 88, comprising a sequence selected from the group comprising SEQ. ID. No. 1, SEQ. ID. No. 2, SEQ. ID.
No. 3, SEQ. ID. No. 5, SEQ. ID. No. 6, SEQ. ID. No. 7 and SEQ. ID. No. 13.
No. 3, SEQ. ID. No. 5, SEQ. ID. No. 6, SEQ. ID. No. 7 and SEQ. ID. No. 13.
90. The HMGA-binding nucleic acid according to one of claims 81 to 86, characterised in that the 3' end of the section Box A2 is joined directly to the 5' end of the section Helix B2.
91. The HMGA-binding nucleic acid according to claim 90, comprising the following structure wherein N1 = U, C, A or G;
N2 = G or U;
N3 = U or C;
N4 = U or A;
N5 = G or A;
N6 = G, A or U;
N7 = G or U;
N8 = U or no nucleotide;
N x = zero to five nucleotides; and N z = zero to six nucleotides;
wherein the section Box A1 and the section Box A2 are in each case selected individually and independently of one another from the group of nucleotide sequences comprising GGGCG, GGGUG and GGGAG;
the section Helix A1 and the section Helix A2 comprise in each case individually and independently of one another four to eight nucleotides, wherein preferably the sections Helix A1 and Helix A2 are completely or partly hybridised with one another, and the sections Helix B1 and Helix B2 comprise in each case individually and independently of one another four to eight nucleotides, wherein preferably the sections Helix B1 and Helix B2 are completely or partly hybridised with one another and the hybridising region comprises four to eight nucleotides, and wherein the sum of the hybridised nucleotides from the hybridisation of section Helix A1 with section Helix A2 and of section Helix B1 with section Helix B2 is 10 to 12 nucleotide pairs.
N2 = G or U;
N3 = U or C;
N4 = U or A;
N5 = G or A;
N6 = G, A or U;
N7 = G or U;
N8 = U or no nucleotide;
N x = zero to five nucleotides; and N z = zero to six nucleotides;
wherein the section Box A1 and the section Box A2 are in each case selected individually and independently of one another from the group of nucleotide sequences comprising GGGCG, GGGUG and GGGAG;
the section Helix A1 and the section Helix A2 comprise in each case individually and independently of one another four to eight nucleotides, wherein preferably the sections Helix A1 and Helix A2 are completely or partly hybridised with one another, and the sections Helix B1 and Helix B2 comprise in each case individually and independently of one another four to eight nucleotides, wherein preferably the sections Helix B1 and Helix B2 are completely or partly hybridised with one another and the hybridising region comprises four to eight nucleotides, and wherein the sum of the hybridised nucleotides from the hybridisation of section Helix A1 with section Helix A2 and of section Helix B1 with section Helix B2 is 10 to 12 nucleotide pairs.
92. The HMGA-binding nucleic acid according to claim 90 or 91, comprising a sequence including SEQ.ID.No.3.
93. The HMGA-binding nucleic acid according to claim 88, comprising the following structure
94. The HMGA-binding nucleic acid according to claim 91, comprising the following structure
95. The HMGA-binding nucleic acid according to claim 93, wherein the sequence is selected from the group comprising SEQ.ID.No.15 and SEQ.ID.No.16.
96. The HMGA-binding nucleic acid according to one of claims 58 to 70 and 73 or 74, characterised in that the intermediate section Z2 comprises 12 to 25 nucleotides.
97. The HMGA-binding nucleic acid according to claim 96, characterised in that the intermediate section Z2 comprises a section Helix C1 and a section Helix C2.
98. The HMGA-binding nucleic acid according to claim 97, characterised in that a central section N c is arranged between the section Helix C1 and the section Helix C2.
99. The HMGA-binding nucleic acid according to claim 97 or 98, characterised in that the length of the section Helix C1 and Helix C2 is identical.
100. The HMGA-binding nucleic acid according to one of claims 97 to 99, characterised in that the length of the section Helix C1 and Helix C2 is individually and independently three to six nucleotides.
101. The HMGA-binding nucleic acid according to claims 97 to 100, characterised in that the sections Helix C1 and Helix C2 are completely or partly hybridised with one another.
102. The HMGA-binding nucleic acid according to one of claims 96 to 101, characterised in that the central section N c comprises three to five nucleotides.
103. The HMGA-binding nucleic acid according to one of claims 96 to 102, characterised in that the nucleic acid comprises a section Box A1 and a section Box A2, wherein between the 3' end of the section Box A1 and the 5' end of the section Helix C1 a nucleotide sequence N b is arranged and comprises three nucleotides.
104. The HMGA-binding nucleic acid according to one of claims 96 to 103, characterised in that the nucleic acid comprises a section Box A1 and a section Box A2, wherein between the 3' end of the section Helix C2 and the 5' end of the section Box A2 a nucleotide sequence Nd is arranged and comprises two to five nucleotides.
105. The HMGA-binding nucleic acid according to one of claims 96 to 104, characterised in that the nucleic acid comprises a section Helix A1 and a section Helix A2.
106. The HMGA-binding nucleic acid according to claim 105, characterised in that the sections Helix A1 and Helix A2 comprise in each case individually and independently of one another five to six nucleotides, wherein preferably the section Helix A1 and the section Helix A2 are completely or partly hybridised with one another.
107. The HMGA-binding nucleic acid according to one of claims 105 and 106, characterised in that between the 3' end of the section Helix A1 and the 5' end of the section Box A1 a nucleotide sequence N a is arranged, wherein N a comprises one to five nucleotides.
108. The HMGA-binding nucleic acid according to one of claims 105 to 107, characterised in that between the 3' end of the section Box A2 and the 5' end of the section Helix A2 a nucleotide sequence GN e is arranged in the 5'-3'-direction, wherein N e comprises one to two nucleotides, preferably A or UU.
109. The HMGA-binding nucleic acid according to one of claims 105 to 108, characterised in that the section Helix C1 and the section Helix C2 have in each case individually and independently of one another a length of five or six nucleotides, wherein preferably the sections Helix C1 and Helix C2 are completely or partly hybridised with one another.
110. The HMGA-binding nucleic acid according to claim 109, comprising the following structure:
wherein N a = one to five nucleotides;
N b = three nucleotides;
N c = three to five nucleotides;
N d = two to five nucleotides; and N c = one to two nucleotides, preferably A or UU;
the section Box A1 and the section Box A2 in each case are selected individually and independently of one another from the group comprising GGGCG, GGGUG and GGGAG, the sections Helix A1 and Helix A2 comprise in each case individually and independently of one another five or six nucleotides, and the sections Helix C1 and Helix C2 comprise in each case five or six nucleotides, which are preferably completely or partly hybridised with one another.
wherein N a = one to five nucleotides;
N b = three nucleotides;
N c = three to five nucleotides;
N d = two to five nucleotides; and N c = one to two nucleotides, preferably A or UU;
the section Box A1 and the section Box A2 in each case are selected individually and independently of one another from the group comprising GGGCG, GGGUG and GGGAG, the sections Helix A1 and Helix A2 comprise in each case individually and independently of one another five or six nucleotides, and the sections Helix C1 and Helix C2 comprise in each case five or six nucleotides, which are preferably completely or partly hybridised with one another.
111. The HMGA-binding nucleic acid according to claim 110, comprising a sequence which is selected from the group including SEQ. ID. No. 8, SEQ. ID. No. 9, SEQ. ID. No.
10, SEQ. ID. No. 11, SEQ. ID. No. 14, SEQ. ID. No. 22 and SEQ. ID. No. 24.
10, SEQ. ID. No. 11, SEQ. ID. No. 14, SEQ. ID. No. 22 and SEQ. ID. No. 24.
112. The HMGA-binding nucleic acid according to one of claims 96 to 101, characterised in that the nucleic acid comprises a section Box A1 and a section Helix C1, wherein a nucleotide A is arranged between the 3' end of the section Box A1 and the 5' end of the section Helix C1.
113. The HMGA-binding nucleic acid according to claim 112, characterised in that the nucleic acid comprises a section Helix C2 and a section Box A2, wherein a nucleotide G is arranged between the 3' end of the section Helix C2 and the 5' end of the section Box A2.
114. The HMGA-binding nucleic acid according to claim 112 or 113, characterised in that the central section N c comprises four nucleotides, wherein N c is preferably GAUG.
115. The HMGA-binding nucleic acid according to one of claims 112 to 114, comprising a section Helix B1 and a section Helix B2.
116. The HMGA-binding nucleic acid according to claim 115, characterised in that the sections Helix B1 and Helix B2 comprise individually and independently of one another in each case five nucleotides, wherein preferably the section Helix B1 is hybridised with the section Helix B2.
117. The HMGA-binding nucleic acid according to claim 115 or 116, characterised in that between the 3' end of the section Helix B1 and the 5' end of the section Box A1 a nucleotide sequence comprising two nucleotides N j is arranged, wherein N j is preferably AG.
118. The HMGA-binding nucleic acid according to one of claims 115 to 117, characterised in that a nucleotide G is arranged between the 3' end of the section Box A2 and the 5' end of Helix B2.
119. The HMGA-binding nucleic acid according to one of claims 112 to 118, comprising a section Helix A1 and a section Helix A2.
120. The HMGA-binding nucleic acid according to claim 119, wherein the sections Helix A1 and Helix A2 comprise individually and independently of one another in each case six nucleotides, and preferably the section Helix A1 and the section Helix A2 are hybridised with one another.
121. The HMGA-binding nucleic acid according to claim 119 or 120, characterised in that between the 3' end of the section Helix A1 and the 5' end of the section Helix H1 a nucleotide sequence comprising two nucleotides N i is arranged, wherein N i is preferably CA.
122. The HMGA-binding nucleic acid according to one of claims 119 to 121, characterised in that a nucleotide A is arranged between the 3' end of the section Helix H2 and the 5' end of the section Helix A2.
123. The HMGA-binding nucleic acid according to one of claims 112 to 122, characterised in that the sections Helix C1 and Helix C2 in each case comprise three nucleotides, wherein preferably the sections Helix C1 and Helix C2 are hybridised with one another.
124. The HMGA-binding nucleic acid according to claim 123, comprising the following structure:
wherein N i comprises two nucleotides, and is preferably CA;
N j comprises two nucleotides, and is preferably AG;
N c comprises four nucleotides, and is preferably GAUG;
the sections Box A1 and Box A2 are in each case selected individually and independently of one another from the group comprising the sequences GGGCG, GGGUG
and GGGAG;
the sections Helix A1 and Helix A2 comprise in each case individually and independently six nucleotides, which are preferably hybridised with one another;
the sections Helix B1 and Helix B2 comprise in each case individually and independently five nucleotides, wherein preferably the section Helix B1 and the section Helix B2 are hybridised with one another, and the sections Helix C1 and Helix C2 comprise in each case individually and independently three nucleotides, wherein preferably the sections Helix C1 and Helix C2 are hybridised with one another.
wherein N i comprises two nucleotides, and is preferably CA;
N j comprises two nucleotides, and is preferably AG;
N c comprises four nucleotides, and is preferably GAUG;
the sections Box A1 and Box A2 are in each case selected individually and independently of one another from the group comprising the sequences GGGCG, GGGUG
and GGGAG;
the sections Helix A1 and Helix A2 comprise in each case individually and independently six nucleotides, which are preferably hybridised with one another;
the sections Helix B1 and Helix B2 comprise in each case individually and independently five nucleotides, wherein preferably the section Helix B1 and the section Helix B2 are hybridised with one another, and the sections Helix C1 and Helix C2 comprise in each case individually and independently three nucleotides, wherein preferably the sections Helix C1 and Helix C2 are hybridised with one another.
125. The HMGA-binding nucleic acid according to claim 124, comprising a sequence that is selected from the group including SEQ.ID.No.12.
126. The Nucleic acid according to one of claims 57 to 125, characterised in that it binds to transcription factors, in particular transcription factors that comprise an AT hook.
127. A Nucleic acid binding to a transcription factor comprising an AT hook, wherein the nucleic acid has a structure according to one of claims 57 to 126.
128. The Composition according to one of claims 37 to 52, wherein the L-nucleic acid is a nucleic acid according to one of claims 57 to 127.
129. Use according to one of claims 1 to 8, wherein the L-nucleic acid is a nucleic acid according to one of claims 57 to 127.
130. A method according to one of claims 9 to 16, wherein the L-nucleic acid is a nucleic acid according to one of claims 57 to 127.
131. Use according to one of claims 17 to 26, wherein the L-nucleic acid is a nucleic acid according to one of claims 57 to 127.
132. The method according to one of claims 27 to 36, wherein the L-nucleic acid is a nucleic acid according to one of claims 57 to 127.
133. A method for screening an HMGA antagonist or HMGA
agonist, comprising the following steps:
- ~providing a candidate HMGA antagonist and/or a candidate HMGA agonist, - ~providing a nucleic acid according to one of claims 57 to 127, - ~providing a test system, which delivers a signal in the presence of an HMGA antagonist and/or an HMGA agonist, and - ~determining whether the candidate HMGA antagonist is an HMGA antagonist, and/or whether the candidate HMGA agonist is an HMGA agonist.
agonist, comprising the following steps:
- ~providing a candidate HMGA antagonist and/or a candidate HMGA agonist, - ~providing a nucleic acid according to one of claims 57 to 127, - ~providing a test system, which delivers a signal in the presence of an HMGA antagonist and/or an HMGA agonist, and - ~determining whether the candidate HMGA antagonist is an HMGA antagonist, and/or whether the candidate HMGA agonist is an HMGA agonist.
134. A method for screening an HMGA agonist and/or an HMGA
antagonist, comprising the following steps:
- ~providing an HMGA immobilised on a phase, preferably a solid phase, - ~providing a nucleic acid according to one of claims 57 to 127, preferably a nucleic acid according to one of claims 57 to 127 that is labelled, -~adding a candidate HMGA agonist and/or a candidate HMGA antagonist, and - ~determining whether the candidate HMGA agonist is an HMGA agonist and/or whether the candidate HMGA
antagonist is an HMGA antagonist.
antagonist, comprising the following steps:
- ~providing an HMGA immobilised on a phase, preferably a solid phase, - ~providing a nucleic acid according to one of claims 57 to 127, preferably a nucleic acid according to one of claims 57 to 127 that is labelled, -~adding a candidate HMGA agonist and/or a candidate HMGA antagonist, and - ~determining whether the candidate HMGA agonist is an HMGA agonist and/or whether the candidate HMGA
antagonist is an HMGA antagonist.
135. The method according to claim 134, characterised in that the determination is carried out by testing whether the nucleic acid is replaced by the candidate HMGA agonist or by the candidate HMGA antagonist.
136. A kit for the detection of HMGA, comprising a nucleic acid according to one of claims 57 to 127.
137. An HMGA antagonist, obtainable by a method according to one of claims 134 and 135.
138. An HMGA agonist, obtainable by a method according to one of claims 134 and 135.
139. A complex comprising an HMGA protein and a nucleic acid according to one of claims 57 to 127.
Applications Claiming Priority (3)
| Application Number | Priority Date | Filing Date | Title |
|---|---|---|---|
| DE102005020874 | 2005-05-04 | ||
| DE102005020874.6 | 2005-05-04 | ||
| PCT/EP2006/004180 WO2006117217A2 (en) | 2005-05-04 | 2006-05-04 | Novel use of spiegelmers |
Publications (1)
| Publication Number | Publication Date |
|---|---|
| CA2607185A1 true CA2607185A1 (en) | 2006-11-09 |
Family
ID=36928624
Family Applications (1)
| Application Number | Title | Priority Date | Filing Date |
|---|---|---|---|
| CA002607185A Abandoned CA2607185A1 (en) | 2005-05-04 | 2006-05-04 | Intracellular active agents |
Country Status (11)
| Country | Link |
|---|---|
| US (2) | US8497250B2 (en) |
| EP (2) | EP2206501A3 (en) |
| JP (2) | JP2008540363A (en) |
| KR (2) | KR101418367B1 (en) |
| CN (2) | CN101217967B (en) |
| AU (1) | AU2006243334A1 (en) |
| BR (1) | BRPI0610367A2 (en) |
| CA (1) | CA2607185A1 (en) |
| MX (1) | MX2007013760A (en) |
| SG (1) | SG161311A1 (en) |
| WO (1) | WO2006117217A2 (en) |
Families Citing this family (39)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| US9492400B2 (en) | 2004-11-04 | 2016-11-15 | Massachusetts Institute Of Technology | Coated controlled release polymer particles as efficient oral delivery vehicles for biopharmaceuticals |
| US9267937B2 (en) | 2005-12-15 | 2016-02-23 | Massachusetts Institute Of Technology | System for screening particles |
| ES2776100T3 (en) | 2006-03-31 | 2020-07-29 | Massachusetts Inst Technology | System for targeted delivery of therapeutic agents |
| EP2019691B1 (en) | 2006-05-15 | 2020-08-12 | Massachusetts Institute of Technology | Polymers for functional particles |
| WO2007150030A2 (en) | 2006-06-23 | 2007-12-27 | Massachusetts Institute Of Technology | Microfluidic synthesis of organic nanoparticles |
| EP2134830A2 (en) | 2007-02-09 | 2009-12-23 | Massachusetts Institute of Technology | Oscillating cell culture bioreactor |
| US20090074828A1 (en) | 2007-04-04 | 2009-03-19 | Massachusetts Institute Of Technology | Poly(amino acid) targeting moieties |
| MX350501B (en) | 2007-10-12 | 2017-09-07 | Massachusetts Inst Technology | Vaccine nanotechnology. |
| US8591905B2 (en) | 2008-10-12 | 2013-11-26 | The Brigham And Women's Hospital, Inc. | Nicotine immunonanotherapeutics |
| US8343498B2 (en) | 2008-10-12 | 2013-01-01 | Massachusetts Institute Of Technology | Adjuvant incorporation in immunonanotherapeutics |
| US8343497B2 (en) | 2008-10-12 | 2013-01-01 | The Brigham And Women's Hospital, Inc. | Targeting of antigen presenting cells with immunonanotherapeutics |
| US8277812B2 (en) | 2008-10-12 | 2012-10-02 | Massachusetts Institute Of Technology | Immunonanotherapeutics that provide IgG humoral response without T-cell antigen |
| EA022699B1 (en) | 2009-05-27 | 2016-02-29 | Селекта Байосайенсиз, Инк. | Targeted synthetic nanocarriers with ph sensitive release of immunomodulatory agents |
| US20130149314A1 (en) * | 2010-02-09 | 2013-06-13 | Jörn Bullerdiek | p19Arf, HMGA2 and MDM2 For Use in the Diagnosis and Treatment of Aberrant Cell Growth |
| JP5941904B2 (en) | 2010-04-21 | 2016-06-29 | ノクソン ファーマ エージー | Nucleic acids that bind to lipids |
| CN106177940A (en) | 2010-05-26 | 2016-12-07 | 西莱克塔生物科技公司 | The dosage choice of the synthesis nano-carrier containing adjuvant |
| CN102375064A (en) * | 2010-08-26 | 2012-03-14 | 杭州华得森生物技术有限公司 | In-vitro diagnostic kit for detecting HMGA2 (High Mobility Group A) content with enzyme-linked immuno sorbent assay |
| DE102010056610A1 (en) * | 2010-12-31 | 2012-07-05 | Volker A. Erdmann | Pharmaceutical composition containing L-DNA |
| KR20140050698A (en) | 2011-07-29 | 2014-04-29 | 셀렉타 바이오사이언시즈, 인크. | Synthetic nanocarriers that generate humoral and cytotoxic t lymphocyte (ctl) immune responses |
| BR112014009104A2 (en) * | 2011-10-21 | 2017-04-18 | Noxxon Pharma Ag | glucagon-binding nucleic acids |
| MX2014008456A (en) * | 2012-01-10 | 2014-11-25 | Noxxon Pharma Ag | Nucleic acids specifically binding cgrp. |
| CN112587658A (en) | 2012-07-18 | 2021-04-02 | 博笛生物科技有限公司 | Targeted Immunotherapy for Cancer |
| US9233119B2 (en) * | 2012-09-27 | 2016-01-12 | Miami University | Use of HGMA-targeted phosphorothioate DNA aptamers to suppress carcinogenic activity and increase sensitivity to chemotherapy agents in human cancer cells |
| US10679730B2 (en) | 2013-05-28 | 2020-06-09 | The University Of Chicago | Prognostic and predictive breast cancer signature |
| WO2014193964A2 (en) * | 2013-05-28 | 2014-12-04 | Marsha Rosner | Prognostic and predictive breast cancer signature |
| US10548985B2 (en) | 2014-01-10 | 2020-02-04 | Birdie Biopharmaceuticals, Inc. | Compounds and compositions for treating EGFR expressing tumors |
| CN105233291A (en) | 2014-07-09 | 2016-01-13 | 博笛生物科技有限公司 | Combination Therapy Compositions and Methods of Combination Therapy for the Treatment of Cancer |
| CA2954446A1 (en) | 2014-07-09 | 2016-01-14 | Shanghai Birdie Biotech, Inc. | Anti-pd-l1 combinations for treating tumors |
| KR101755617B1 (en) | 2014-07-23 | 2017-07-10 | 한국과학기술연구원 | Drug Carrier Having Self-assembled 3-D Nucleic Acid Nano-structure |
| CN112546238A (en) | 2014-09-01 | 2021-03-26 | 博笛生物科技有限公司 | anti-PD-L1 conjugates for the treatment of tumors |
| PL3233174T3 (en) * | 2014-12-19 | 2021-08-30 | Kemin Industries, Inc. | Intraocular delivery of bioactive molecules using iontophoresis |
| WO2016196218A1 (en) | 2015-05-31 | 2016-12-08 | Curegenix Corporation | Combination compositions for immunotherapy |
| US10221249B2 (en) | 2015-09-10 | 2019-03-05 | Affigen, Llc | Method of making patient specific anti-idiotype antibodies |
| DE17829597T1 (en) * | 2016-11-30 | 2019-12-05 | Noxxon Pharma Ag | METHOD FOR THE POLYALKOXYLATION OF NUCLEIC ACIDS FOR THE RECOVERY AND RE-USE OF AN EXCESSIVE POLYALKOXYLATION REAGENT |
| US20220033813A1 (en) * | 2018-09-11 | 2022-02-03 | The Texas A&M University System | L-oligonucleotide inhibitors of polycomb repressive complex 2 (prc2) |
| WO2021222674A1 (en) * | 2020-04-30 | 2021-11-04 | Velanidi Technologies, Llc | Molecular wires for detecting a biological or chemical entity or event |
| CN112725438B (en) * | 2021-02-05 | 2023-08-22 | 深圳市宝安区妇幼保健院 | Endometrial polyp methylation marker combination, detection kit and application |
| CN114807183B (en) * | 2021-12-06 | 2023-06-02 | 西藏自治区农牧科学院农业研究所 | New use of highland barley cyanidin oxymethyl transferase gene |
| CN118311277B (en) * | 2024-06-11 | 2024-12-31 | 北京卫未科学技术有限公司 | Kit for early screening and auxiliary diagnosis of cancers and application thereof |
Family Cites Families (21)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| US5622828A (en) * | 1990-06-11 | 1997-04-22 | Nexstar Pharmaceuticals, Inc. | High-affinity oligonucleotide ligands to secretory phospholipase A2 (sPLA2) |
| JPH09502354A (en) * | 1993-09-08 | 1997-03-11 | ネクスター ファーマスーティカルズ,インコーポレイテッド | Nucleic acid ligands and improved methods for making the same |
| EP0824541B1 (en) * | 1995-05-04 | 2009-12-16 | Gilead Sciences, Inc. | Nucleic acid ligand complexes |
| US5780611A (en) * | 1995-09-15 | 1998-07-14 | Ramareddy Venkata Guntaka | Oligomers which inhibit expression of collagen genes |
| US6171779B1 (en) | 1996-07-12 | 2001-01-09 | University Of Medicine & Dentistry Of New Jersey | HMGI proteins in cancer |
| US6605713B1 (en) * | 1996-08-30 | 2003-08-12 | Jens Peter Furste | Mirror-symmetrical selection and evolution of nucleic acids |
| DE19726186A1 (en) * | 1997-06-20 | 1998-12-24 | Boehringer Ingelheim Int | Complexes for the transport of nucleic acid into higher eukaryotic cells |
| JP2004510829A (en) * | 2000-10-09 | 2004-04-08 | バイエル アクチェンゲゼルシャフト | Complex for transferring nucleic acid into cells |
| DE10118452A1 (en) * | 2001-04-12 | 2002-10-31 | Joern Bullerdiek | Nucleic acid sequences from hyperplasias and thyroid tumors |
| US7629456B2 (en) * | 2001-10-26 | 2009-12-08 | Noxxon Pharma Ag | Modified L-nucleic acid |
| EP1453531B1 (en) * | 2001-12-19 | 2008-05-14 | Alcedo Biotech GmbH | Use of hmgb proteins and nucleic acids that code therefor |
| DE10211558A1 (en) * | 2002-03-15 | 2003-10-09 | Noxxon Pharma Ag | Use of double-stranded RNA containing L-nucleotide, for treating cancer, infections and virus disease, also in screening for immunomodulators |
| AU2003233310A1 (en) * | 2002-05-08 | 2003-11-11 | Max-Planck-Gesellschaft Zur Forderung Der Wissenschaften E.V. | Agent and method for transporting biologically active molecules in cells |
| US7250496B2 (en) * | 2002-11-14 | 2007-07-31 | Rosetta Genomics Ltd. | Bioinformatically detectable group of novel regulatory genes and uses thereof |
| JP2006517537A (en) * | 2003-01-03 | 2006-07-27 | アルケド バイオテック ゲーエムベーハー | Use of DNA-binding proteins |
| KR20060015505A (en) * | 2003-04-13 | 2006-02-17 | 엔존 파마슈티컬즈, 인코포레이티드 | Oligonucleotide Prodrugs |
| JP2007501850A (en) * | 2003-05-09 | 2007-02-01 | ノボソム アーゲー | Injectable liposomal depot formulation for delivery of active agents |
| EP1667729A4 (en) * | 2003-05-23 | 2007-10-17 | Univ Texas | APTAMERE A OLIGONUCLEOSIDE PHOSPHOROTHIOATE AND PHOSPHORODITHIOATE SELECTED COMBINATORYLY AND ACCORDING TO THE STRUCTURE FOR TARGETING AP-1 TRANSCRIPTION FACTORS |
| US7727969B2 (en) * | 2003-06-06 | 2010-06-01 | Massachusetts Institute Of Technology | Controlled release nanoparticle having bound oligonucleotide for targeted delivery |
| CA2554424A1 (en) * | 2004-01-26 | 2005-08-11 | Control Delivery Systems, Inc. | Controlled and sustained delivery of nucleic acid-based therapeutic agents |
| DK1830888T3 (en) * | 2004-12-27 | 2015-10-19 | Silence Therapeutics Gmbh | LIPID COMPLEX COATED WITH PEG AND APPLICATION THEREOF |
-
2006
- 2006-05-04 MX MX2007013760A patent/MX2007013760A/en unknown
- 2006-05-04 CA CA002607185A patent/CA2607185A1/en not_active Abandoned
- 2006-05-04 CN CN200680024585.4A patent/CN101217967B/en not_active Expired - Fee Related
- 2006-05-04 KR KR1020147008135A patent/KR101418367B1/en not_active Expired - Fee Related
- 2006-05-04 US US11/913,526 patent/US8497250B2/en not_active Expired - Fee Related
- 2006-05-04 BR BRPI0610367-7A patent/BRPI0610367A2/en not_active IP Right Cessation
- 2006-05-04 WO PCT/EP2006/004180 patent/WO2006117217A2/en not_active Ceased
- 2006-05-04 KR KR1020077025457A patent/KR101418369B1/en not_active Expired - Fee Related
- 2006-05-04 AU AU2006243334A patent/AU2006243334A1/en not_active Abandoned
- 2006-05-04 EP EP09016125A patent/EP2206501A3/en not_active Withdrawn
- 2006-05-04 EP EP06742799A patent/EP1877069A2/en not_active Ceased
- 2006-05-04 SG SG201002837-1A patent/SG161311A1/en unknown
- 2006-05-04 JP JP2008509380A patent/JP2008540363A/en active Pending
- 2006-05-04 CN CN201410395203.5A patent/CN104293780A/en active Pending
-
2013
- 2013-06-20 JP JP2013129800A patent/JP5766750B2/en not_active Expired - Fee Related
- 2013-07-30 US US13/953,797 patent/US9074214B2/en not_active Expired - Fee Related
Also Published As
| Publication number | Publication date |
|---|---|
| JP5766750B2 (en) | 2015-08-19 |
| JP2008540363A (en) | 2008-11-20 |
| EP1877069A2 (en) | 2008-01-16 |
| SG161311A1 (en) | 2010-05-27 |
| MX2007013760A (en) | 2008-01-28 |
| US20130337049A1 (en) | 2013-12-19 |
| KR101418367B1 (en) | 2014-07-25 |
| JP2013224319A (en) | 2013-10-31 |
| CN101217967A (en) | 2008-07-09 |
| CN104293780A (en) | 2015-01-21 |
| EP2206501A2 (en) | 2010-07-14 |
| US8497250B2 (en) | 2013-07-30 |
| AU2006243334A1 (en) | 2006-11-09 |
| KR20080009276A (en) | 2008-01-28 |
| KR20140042941A (en) | 2014-04-07 |
| WO2006117217A3 (en) | 2007-08-09 |
| CN101217967B (en) | 2014-09-10 |
| WO2006117217A2 (en) | 2006-11-09 |
| US9074214B2 (en) | 2015-07-07 |
| BRPI0610367A2 (en) | 2010-06-15 |
| EP2206501A3 (en) | 2010-09-29 |
| KR101418369B1 (en) | 2014-07-24 |
| US20090192100A1 (en) | 2009-07-30 |
Similar Documents
| Publication | Publication Date | Title |
|---|---|---|
| US9074214B2 (en) | Use of spiegelmers | |
| EP3049523B1 (en) | Multiaptamer target detection | |
| Alecki et al. | RNA-DNA strand exchange by the Drosophila Polycomb complex PRC2 | |
| Thiviyanathan et al. | Aptamers and the next generation of diagnostic reagents | |
| Christian et al. | Analysis of substrate recognition by the ribonucleoprotein endonuclease RNase P | |
| US20060292560A1 (en) | Transcription factor target gene discovery | |
| Ranjith-Kumar et al. | Single-stranded oligonucleotides can inhibit cytokine production induced by human toll-like receptor 3 | |
| Szilagyi et al. | Capillary gel electrophoresis analysis of G-quartet forming oligonucleotides used in DNA–protein interaction studies | |
| Cho et al. | In vitro selection of specific RNA aptamers for the NFAT DNA binding domain | |
| AU2012241062A1 (en) | Novel use of spiegelmers | |
| HK1119388A (en) | Novel use of spiegelmers | |
| CN116970694B (en) | Application of miR-9 and its analogs in the preparation of drugs for diagnosing and/or treating cellular inflammation | |
| Gunaratne et al. | Key RNA-binding domains in the La protein establish tRNA modification levels in Trypanosoma brucei | |
| Palchetti et al. | Electrochemical nucleic acid aptamer–based biosensors | |
| Faure et al. | Cell‐to‐Cell Contact Activates the Long Terminal Repeat of Human Immunodeficiency Virus 1 Through its κB Motif | |
| Martín García et al. | Alternative splicing regulation of cell-cycle genes by SPF45/SR140/CHERP complex controls cell proliferation | |
| Kim et al. | Cell-based aptamer selection for diagnosing cancer and predicting cancer progression | |
| HK1227430B (en) | Multiaptamer target detection | |
| Class et al. | Patent application title: Multiaptamer Target Detection Inventors: Urs A. Ochsner (Denver, CO, US) Louis S. Green (Lafayette, CO, US) Larry Gold (Boulder, CO, US) Nebojsa Janjic (Boulder, CO, US) Nebojsa Janjic (Boulder, CO, US) Evaldas Katilius (Superior, AZ, US) | |
| STREHLITZ | REGINA STOLTENBURG, CHRISTINE REINEMANN AND |
Legal Events
| Date | Code | Title | Description |
|---|---|---|---|
| EEER | Examination request | ||
| FZDE | Discontinued |
Effective date: 20160923 |