CA2522994A1 - Nucleic acids and corresponding proteins entitled 109p1d4 useful in treatment and detection of cancer - Google Patents
Nucleic acids and corresponding proteins entitled 109p1d4 useful in treatment and detection of cancer Download PDFInfo
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- 108090000623 proteins and genes Proteins 0.000 title claims abstract 51
- 102000004169 proteins and genes Human genes 0.000 title claims abstract 49
- 206010028980 Neoplasm Diseases 0.000 title claims abstract 15
- 201000011510 cancer Diseases 0.000 title claims abstract 14
- 102000039446 nucleic acids Human genes 0.000 title claims 8
- 108020004707 nucleic acids Proteins 0.000 title claims 8
- 150000007523 nucleic acids Chemical class 0.000 title claims 8
- 238000001514 detection method Methods 0.000 title claims 2
- 239000012634 fragment Substances 0.000 claims abstract 12
- 210000001744 T-lymphocyte Anatomy 0.000 claims abstract 10
- 230000001225 therapeutic effect Effects 0.000 claims abstract 3
- 238000000034 method Methods 0.000 claims 31
- 239000002773 nucleotide Substances 0.000 claims 31
- 125000003729 nucleotide group Chemical group 0.000 claims 31
- 239000000203 mixture Substances 0.000 claims 25
- 108090000765 processed proteins & peptides Proteins 0.000 claims 24
- 125000003275 alpha amino acid group Chemical group 0.000 claims 20
- 210000004027 cell Anatomy 0.000 claims 19
- 108091033319 polynucleotide Proteins 0.000 claims 15
- 102000040430 polynucleotide Human genes 0.000 claims 15
- 239000002157 polynucleotide Substances 0.000 claims 15
- 229920001184 polypeptide Polymers 0.000 claims 11
- 102000004196 processed proteins & peptides Human genes 0.000 claims 11
- 230000000295 complement effect Effects 0.000 claims 8
- 210000001151 cytotoxic T lymphocyte Anatomy 0.000 claims 7
- 108091026890 Coding region Proteins 0.000 claims 6
- 210000003719 b-lymphocyte Anatomy 0.000 claims 6
- 230000012010 growth Effects 0.000 claims 6
- 230000033458 reproduction Effects 0.000 claims 6
- 230000035899 viability Effects 0.000 claims 6
- 108091032973 (ribonucleotides)n+m Proteins 0.000 claims 5
- 108020004459 Small interfering RNA Proteins 0.000 claims 4
- 239000003795 chemical substances by application Substances 0.000 claims 4
- 230000028993 immune response Effects 0.000 claims 4
- 210000000987 immune system Anatomy 0.000 claims 4
- 230000002401 inhibitory effect Effects 0.000 claims 4
- 230000003993 interaction Effects 0.000 claims 4
- 239000000126 substance Substances 0.000 claims 4
- 102000053642 Catalytic RNA Human genes 0.000 claims 3
- 108090000994 Catalytic RNA Proteins 0.000 claims 3
- 241001465754 Metazoa Species 0.000 claims 3
- 150000001413 amino acids Chemical class 0.000 claims 3
- 210000002443 helper t lymphocyte Anatomy 0.000 claims 3
- 108020004999 messenger RNA Proteins 0.000 claims 3
- 108091092562 ribozyme Proteins 0.000 claims 3
- 102000040650 (ribonucleotides)n+m Human genes 0.000 claims 2
- 102000008394 Immunoglobulin Fragments Human genes 0.000 claims 2
- 108010021625 Immunoglobulin Fragments Proteins 0.000 claims 2
- 230000004663 cell proliferation Effects 0.000 claims 2
- 102000004127 Cytokines Human genes 0.000 claims 1
- 108090000695 Cytokines Proteins 0.000 claims 1
- 241000124008 Mammalia Species 0.000 claims 1
- 230000001472 cytotoxic effect Effects 0.000 claims 1
- 230000000694 effects Effects 0.000 claims 1
- 210000004408 hybridoma Anatomy 0.000 claims 1
- 239000008194 pharmaceutical composition Substances 0.000 claims 1
- 230000008685 targeting Effects 0.000 claims 1
- 230000009261 transgenic effect Effects 0.000 claims 1
- 230000024932 T cell mediated immunity Effects 0.000 abstract 1
- 230000028996 humoral immune response Effects 0.000 abstract 1
- 230000003053 immunization Effects 0.000 abstract 1
- 238000002649 immunization Methods 0.000 abstract 1
- 230000000069 prophylactic effect Effects 0.000 abstract 1
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- C07K14/435—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from animals; from humans
- C07K14/46—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from animals; from humans from vertebrates
- C07K14/47—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from animals; from humans from vertebrates from mammals
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- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61P—SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
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- A61P35/02—Antineoplastic agents specific for leukemia
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- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61P—SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
- A61P37/00—Drugs for immunological or allergic disorders
- A61P37/02—Immunomodulators
- A61P37/04—Immunostimulants
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- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07K—PEPTIDES
- C07K14/00—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof
- C07K14/435—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from animals; from humans
- C07K14/705—Receptors; Cell surface antigens; Cell surface determinants
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Abstract
A novel gene 109P1D4 and its encoded protein, and variants thereof, are described wherein 109P1D4 exhibits tissue specific expression in normal adult tissue, and is aberrantly expressed in the cancers listed in Table i.
Consequently, 109P1D4 provides a diagnostic, prognostic, prophylactic and/or therapeutic target for cancer. The 109P1D4 gene or fragment thereof, or its encoded protein, or variants thereof, or a fragment thereof, can be used to elicit a humoral or cellular immune response; antibodies or T cells reactive with 109P1D4 can be used in active or passive immunization.
Consequently, 109P1D4 provides a diagnostic, prognostic, prophylactic and/or therapeutic target for cancer. The 109P1D4 gene or fragment thereof, or its encoded protein, or variants thereof, or a fragment thereof, can be used to elicit a humoral or cellular immune response; antibodies or T cells reactive with 109P1D4 can be used in active or passive immunization.
Claims (21)
1. A composition that comprises:
a) a peptide of eight, nine, ten, or eleven contiguous amino acids of a protein of Figure 2;
b) a peptide of Tables VIII-XXI;
c) a peptide of Tables XXII to XLV; or, d) a peptide of Tables XLVI to XLIX.
a) a peptide of eight, nine, ten, or eleven contiguous amino acids of a protein of Figure 2;
b) a peptide of Tables VIII-XXI;
c) a peptide of Tables XXII to XLV; or, d) a peptide of Tables XLVI to XLIX.
2. A composition of claim 1, which elicits an immune response.
3. A protein of claim 2 that is at least 90, 91, 92, 93, 94, 95, 96, 97, 98, or 99% homologous or identical to an entire amino acid sequence shown in Figure 2.
4. A protein of claim 2, which is bound by an antibody that specifically binds to a protein of Figure 2.
5. A composition of claim 2 wherein the composition comprises a cytotoxic T
cell (CTL) polypeptide epitope or an analog thereof, from the amino acid sequence of a protein of Figure 2.
cell (CTL) polypeptide epitope or an analog thereof, from the amino acid sequence of a protein of Figure 2.
6. A composition of claim 5 further limited by a proviso that the epitope is not an entire amino acid sequence of Figure 2.
7. A composition of claim 2 further limited by a proviso that the polypeptide is not an entire amino acid sequence of a protein of Figure 2.
8. A composition of claim 2 that comprises an antibody polypeptide epitope from an amino acid sequence of Figure 2.
9. A composition of claim 8 further limited by a proviso that the epitope is not an entire amino acid sequence of Figure 2.
10. A composition of claim 8 wherein the antibody epitope comprises a peptide region of at least 5 amino acids of Figure 2 in any whole number increment up to the end of said peptide, wherein the epitope comprises an amino acid position selected from:
a) an amino acid position having a value greater than 0.5 in the Hydrophilicity profile of Figure 5, b) an amino acid position having a value less than 0.5 in the Hydropathicity profile of Figure 6;
c) an amino acid position having a value greater than 0.5 in the Percent Accessible Residues profile of Figure 7;
d) an amino acid position having a value greater than 0.5 in the Average Flexibility profile of Figure 8;
e) an amino acid position having a value greater than 0.5 in the Beta-turn profile of Figure 9;
f) a combination of at least two of a) through e);
g) a combination of at least three of a) through e);
h) a combination of at least four of a) through e); or a combination of five of a) through e).
a) an amino acid position having a value greater than 0.5 in the Hydrophilicity profile of Figure 5, b) an amino acid position having a value less than 0.5 in the Hydropathicity profile of Figure 6;
c) an amino acid position having a value greater than 0.5 in the Percent Accessible Residues profile of Figure 7;
d) an amino acid position having a value greater than 0.5 in the Average Flexibility profile of Figure 8;
e) an amino acid position having a value greater than 0.5 in the Beta-turn profile of Figure 9;
f) a combination of at least two of a) through e);
g) a combination of at least three of a) through e);
h) a combination of at least four of a) through e); or a combination of five of a) through e).
11. A polynucleotide that encodes a protein of claim 1.
12. A polynucleotide of claim 11 that comprises a nucleic acid molecule set forth in Figure 2.
13. A polynucleotide of claim 12 further limited by a proviso that the encoded protein is not an entire amino acid sequence of Figure 2.
14. A composition comprising a polynucleotide that is fully complementary to a polynucleotide of claim 11.
15. An 109P1D4 siRNA composition that comprises siRNA (double stranded RNA) that corresponds to the nucleic acid ORF sequence of the 109P1D4 protein or a subsequence thereof;
wherein the subsequence is 19, 20, 21, 22, 23, 24, or 25 contiguous RNA nucleotides in length and contains sequences that are complementary and non-complementary to at least a portion of the mRNA coding sequence.
wherein the subsequence is 19, 20, 21, 22, 23, 24, or 25 contiguous RNA nucleotides in length and contains sequences that are complementary and non-complementary to at least a portion of the mRNA coding sequence.
16. A polynucleotide of claim 13 that further comprises an additional nucleotide sequence that encodes an additional peptide of claim 1.
17. A method of generating a mammalian immune response directed to a protein of Figure 2, the method comprising:
exposing cells of the mammal's immune system to a portion of a) a 109P1D4-related protein and/or b) a nucleotide sequence that encodes said protein, whereby an immune response is generated to said protein.
exposing cells of the mammal's immune system to a portion of a) a 109P1D4-related protein and/or b) a nucleotide sequence that encodes said protein, whereby an immune response is generated to said protein.
18. A method of generating an immune response of claim 17, said method comprising:
providing a 109P1 D4-related protein that comprises at least one T cell or at least one B cell epitope; and, contacting the epitope with a mammalian immune system T cell or B cell respectively, whereby the T cell or B cell is activated.
providing a 109P1 D4-related protein that comprises at least one T cell or at least one B cell epitope; and, contacting the epitope with a mammalian immune system T cell or B cell respectively, whereby the T cell or B cell is activated.
19. A method of claim 18 wherein the immune system cell is a B cell, whereby the activated B cell generates antibodies that specifically bind to the 109P1D4-related protein.
20. A method of claim 18 wherein the immune system cell is a T cell that is a cytotoxic T cell (CTL), whereby the activated CTL kills an autologous cell that expresses the 109P1D4-related protein.
21. A method of claim 18 wherein the immune system cell is a T cell that is a helper T cell (HTL), whereby the activated HTL secretes cytokines that facilitate the cytotoxic activity of a cytotoxic T cell (CTL) or the antibody-producing activity of a B cell.
corresponds to the nucleic acid ORF sequence of the 109P1D4 protein or a subsequence thereof; wherein the subsequence is 19, 20, 21, 22, 23, 24, or 25 contiguous RNA nucleotides in length and contains sequences that are complementary and non-complementary to at least a portion of the mRNA coding sequence.
30. A composition of claim 28, further comprising a physiologically acceptable carrier.
31. A pharmaceutical composition that comprises the composition of claim 28 in a human unit dose form.
32. A composition of claim 28 wherein the substance comprises an antibody or fragment thereof that specifically binds to a protein of Figure 2.
33. An antibody or fragment thereof of claim 32, which is monoclonal.
34. An antibody of claim 32, which is a human antibody, a humanized antibody or a chimeric antibody.
35. A non-human transgenic animal that produces an antibody of claim 32.
36. A hybridoma that produces an antibody of claim 33.
37. A composition of claim 28 wherein the substance reduces or inhibits the viability, growth or reproduction status of a cell that expresses a protein of Figure 2.
38. A composition of claim 28 wherein the substance increases or enhances the viability, growth or reproduction status of a cell that expresses a protein of Figure 2.
39. A composition of claim 28 wherein the substance is selected from the group comprising:
a) an antibody or fragment thereof, either of which immunospecifically binds to a protein of Figure 2;
b) a polynucleotide that encodes an antibody or fragment thereof, either of which immunospecifically binds to a protein of Figure 2;
c) a ribozyme that cleaves a polynucleotide having a 109P1D4 coding sequence, or a nucleic acid molecule that encodes the ribozyme; and, a physiologically acceptable carrier; and d) human T cells, wherein said T cells specifically recognize a 109P1D4 peptide subsequence in the context of a particular HLA molecule;
e) a protein of Figure 2, or a fragment of a protein of Figure 2;
f) a nucleotide encoding a protein of Figure 2, or a nucleotide encoding a fragment of a protein of Figure 2;
g) a peptide of eight, nine, ten, or eleven contiguous amino acids of a protein of Figure 2;
h) a peptide of Tables VIII-XXI;
i) a peptide of Tables XXII to XLV;
j) a peptide of Tables XLVI to XLIX;
k) an antibody polypeptide epitope from an amino acid sequence of Figure 2;
l) a polynucleotide that encodes an antibody polypeptide epitope from an amino acid sequence of Figure 2; or m) an 109P1D4 siRNA composition that comprises siRNA (double stranded RNA) that corresponds to the nucleic acid ORF sequence of the 109P1D4 protein or a subsequence thereof; wherein the subsequence is 19, 20, 21, 22, 23, 24, or 25 contiguous RNA nucleotides in length and contains sequences that are complementary and non-complementary to at least a portion of the mRNA coding sequence.
40. A method of inhibiting viability, growth or reproduction status of cancer cells that express a protein of Figure 2, the method comprising:
administering to the cells the composition of claim 28, thereby inhibiting the viability, growth or reproduction status of said cells.
41. The method of claim 40, wherein the composition comprises an antibody or fragment thereof, either of which specifically bind to a 109P1D4-related protein.
42. The method of claim 40, wherein the composition comprises (i) a 109P1 D4-related protein or, (ii) a polynucleotide comprising a coding sequence for a 109P1D4-related protein or comprising a polynucleotide complementary to a coding sequence for a 109P1D4-related protein.
43. The method of claim 40, wherein the composition comprises a ribozyme that cleaves a polynucleotide that encodes a protein of Figure 2.
44. The method of claim 40, wherein the composition comprises human T cells to said cancer cells, wherein said T cells specifically recognize a peptide subsequence of a protein of Figure 2 while the subsequence is in the context of the particular HLA molecule.
45. The method of claim 40, wherein the composition comprises a vector that delivers a nucleotide that encodes a single chain monoclonal antibody, whereby the encoded single chain antibody is expressed intracellularly within cancer cells that express a protein of Figure 2.
46. A method of delivering an agent to a cell that expresses a protein of Figure 2, said method comprising:
providing the agent conjugated to an antibody or fragment thereof of claim 32;
and, exposing the cell to the antibody-agent or fragment-agent conjugate.
47. A method of inhibiting viability, growth or reproduction status of cancer cells that express a protein of Figure 2, the method comprising:
administering to the cells the composition of claim 28, thereby inhibiting the viability, growth or reproduction status of said cells.
48. A method of targeting information for preventing or treating a cancer of a tissue listed in Table I to a subject in need thereof, which comprises:
detecting the presence or absence of the expression of a polynucleotide associated with a cancer of a tissue listed in Table I in a sample from a subject, wherein the expression of the polynucleotide is selected from the group consisting of:
(a) a nucleotide sequence in Figure 2;
(b) a nucleotide sequence which encodes a polypeptide encoded by a nucleotide sequence in Figure 2;
(c) a nucleotide sequence which encodes a polypeptide that is 90% or more identical to the amino acid sequence encoded by a nucleotide sequence in Figure 2;
directing information for preventing or treating the cancer of a tissue listed in Table I to a subject in need thereof based upon the presence or absence of the expression of the polynucleotide in the sample.
49. The method of claim 48, wherein the information comprises a description of detection procedure or treatment for a cancer of a tissue listed in Table I.
50. A method for identifying a candidate molecule that modulates cell proliferation, which comprises:
(a) introducing a test molecule to a system which comprises a nucleic acid comprising a nucleotide sequence selected from the group consisting of:
(i) the nucleotide sequence of SEQ ID NO:1;
(ii) a nucleotide sequence which encodes a polypeptide consisting of the amino acid sequence set forth in Figure 3;
(iii) a nucleotide sequence which encodes a polypeptide that is 90% or more identical to the amino acid sequence set forth in Figure 3; and (iv) a fragment of a nucleotide sequence of (i), (ii), or (iii); or introducing a test molecule to a system which comprises a protein encoded by a nucleotide sequence of (i), (ii), (iii), or (iv); and (b) determining the presence or absence of an interaction between the test molecule and the nucleotide sequence or protein, whereby the presence of an interaction between the test molecule and the nucleotide sequence or protein identifies the test molecule as a candidate molecule that modulates cell proliferation.
51. The method of claim 50, wherein the system is an animal.
52. The method of claim 50, wherein the system is a cell.
53. The method of claim 50, wherein the test molecule comprises an antibody or antibody fragment that specifically binds the protein encoded by the nucleotide sequence of (i), (ii), (iii), or (iv).
54. A method for treating a cancer of a tissue listed in Table I in a subject, which comprises administering a candidate molecule identified by the method of claim 50 to a subject in need thereof, whereby the candidate molecule treats a cancer of a tissue listed in Table I in the subject.
55. A method for identifying a candidate therapeutic for treating a cancer of a tissue listed in Table I, which comprises:
(a) introducing a test molecule to a system which comprises a nucleic acid comprising a nucleotide sequence selected from the group consisting of:
(i) the nucleotide sequence of SEQ ID NO:1;
(ii) a nucleotide sequence which encodes a polypeptide consisting of the amino acid sequence set forth in Figure 3;
(iii) a nucleotide sequence which encodes a polypeptide that is 90% or more identical to the amino acid sequence set forth in Figure 3; and (iv) a fragment of a nucleotide sequence of (i), (ii), or (iii); or introducing a test molecule to a system which comprises a protein encoded by a nucleotide sequence of (i), (ii), (iii), or (iv); and (b) determining the presence or absence of an interaction between the test molecule and the nucleotide sequence or protein, whereby the presence of an interaction between the test molecule and the nucleotide sequence or protein identifies the test molecule as a candidate therapeutic for treating a cancer of a tissue listed in Table I.
56. The method of claim 55, wherein the system is an animal.
57. The method of claim 55, wherein the system is a cell.
58. The method of claim 55, wherein the test molecule comprises an antibody or antibody fragment that specifically binds the protein encoded by the nucleotide sequence of (i), (ii), (iii), or (iv).
corresponds to the nucleic acid ORF sequence of the 109P1D4 protein or a subsequence thereof; wherein the subsequence is 19, 20, 21, 22, 23, 24, or 25 contiguous RNA nucleotides in length and contains sequences that are complementary and non-complementary to at least a portion of the mRNA coding sequence.
30. A composition of claim 28, further comprising a physiologically acceptable carrier.
31. A pharmaceutical composition that comprises the composition of claim 28 in a human unit dose form.
32. A composition of claim 28 wherein the substance comprises an antibody or fragment thereof that specifically binds to a protein of Figure 2.
33. An antibody or fragment thereof of claim 32, which is monoclonal.
34. An antibody of claim 32, which is a human antibody, a humanized antibody or a chimeric antibody.
35. A non-human transgenic animal that produces an antibody of claim 32.
36. A hybridoma that produces an antibody of claim 33.
37. A composition of claim 28 wherein the substance reduces or inhibits the viability, growth or reproduction status of a cell that expresses a protein of Figure 2.
38. A composition of claim 28 wherein the substance increases or enhances the viability, growth or reproduction status of a cell that expresses a protein of Figure 2.
39. A composition of claim 28 wherein the substance is selected from the group comprising:
a) an antibody or fragment thereof, either of which immunospecifically binds to a protein of Figure 2;
b) a polynucleotide that encodes an antibody or fragment thereof, either of which immunospecifically binds to a protein of Figure 2;
c) a ribozyme that cleaves a polynucleotide having a 109P1D4 coding sequence, or a nucleic acid molecule that encodes the ribozyme; and, a physiologically acceptable carrier; and d) human T cells, wherein said T cells specifically recognize a 109P1D4 peptide subsequence in the context of a particular HLA molecule;
e) a protein of Figure 2, or a fragment of a protein of Figure 2;
f) a nucleotide encoding a protein of Figure 2, or a nucleotide encoding a fragment of a protein of Figure 2;
g) a peptide of eight, nine, ten, or eleven contiguous amino acids of a protein of Figure 2;
h) a peptide of Tables VIII-XXI;
i) a peptide of Tables XXII to XLV;
j) a peptide of Tables XLVI to XLIX;
k) an antibody polypeptide epitope from an amino acid sequence of Figure 2;
l) a polynucleotide that encodes an antibody polypeptide epitope from an amino acid sequence of Figure 2; or m) an 109P1D4 siRNA composition that comprises siRNA (double stranded RNA) that corresponds to the nucleic acid ORF sequence of the 109P1D4 protein or a subsequence thereof; wherein the subsequence is 19, 20, 21, 22, 23, 24, or 25 contiguous RNA nucleotides in length and contains sequences that are complementary and non-complementary to at least a portion of the mRNA coding sequence.
40. A method of inhibiting viability, growth or reproduction status of cancer cells that express a protein of Figure 2, the method comprising:
administering to the cells the composition of claim 28, thereby inhibiting the viability, growth or reproduction status of said cells.
41. The method of claim 40, wherein the composition comprises an antibody or fragment thereof, either of which specifically bind to a 109P1D4-related protein.
42. The method of claim 40, wherein the composition comprises (i) a 109P1 D4-related protein or, (ii) a polynucleotide comprising a coding sequence for a 109P1D4-related protein or comprising a polynucleotide complementary to a coding sequence for a 109P1D4-related protein.
43. The method of claim 40, wherein the composition comprises a ribozyme that cleaves a polynucleotide that encodes a protein of Figure 2.
44. The method of claim 40, wherein the composition comprises human T cells to said cancer cells, wherein said T cells specifically recognize a peptide subsequence of a protein of Figure 2 while the subsequence is in the context of the particular HLA molecule.
45. The method of claim 40, wherein the composition comprises a vector that delivers a nucleotide that encodes a single chain monoclonal antibody, whereby the encoded single chain antibody is expressed intracellularly within cancer cells that express a protein of Figure 2.
46. A method of delivering an agent to a cell that expresses a protein of Figure 2, said method comprising:
providing the agent conjugated to an antibody or fragment thereof of claim 32;
and, exposing the cell to the antibody-agent or fragment-agent conjugate.
47. A method of inhibiting viability, growth or reproduction status of cancer cells that express a protein of Figure 2, the method comprising:
administering to the cells the composition of claim 28, thereby inhibiting the viability, growth or reproduction status of said cells.
48. A method of targeting information for preventing or treating a cancer of a tissue listed in Table I to a subject in need thereof, which comprises:
detecting the presence or absence of the expression of a polynucleotide associated with a cancer of a tissue listed in Table I in a sample from a subject, wherein the expression of the polynucleotide is selected from the group consisting of:
(a) a nucleotide sequence in Figure 2;
(b) a nucleotide sequence which encodes a polypeptide encoded by a nucleotide sequence in Figure 2;
(c) a nucleotide sequence which encodes a polypeptide that is 90% or more identical to the amino acid sequence encoded by a nucleotide sequence in Figure 2;
directing information for preventing or treating the cancer of a tissue listed in Table I to a subject in need thereof based upon the presence or absence of the expression of the polynucleotide in the sample.
49. The method of claim 48, wherein the information comprises a description of detection procedure or treatment for a cancer of a tissue listed in Table I.
50. A method for identifying a candidate molecule that modulates cell proliferation, which comprises:
(a) introducing a test molecule to a system which comprises a nucleic acid comprising a nucleotide sequence selected from the group consisting of:
(i) the nucleotide sequence of SEQ ID NO:1;
(ii) a nucleotide sequence which encodes a polypeptide consisting of the amino acid sequence set forth in Figure 3;
(iii) a nucleotide sequence which encodes a polypeptide that is 90% or more identical to the amino acid sequence set forth in Figure 3; and (iv) a fragment of a nucleotide sequence of (i), (ii), or (iii); or introducing a test molecule to a system which comprises a protein encoded by a nucleotide sequence of (i), (ii), (iii), or (iv); and (b) determining the presence or absence of an interaction between the test molecule and the nucleotide sequence or protein, whereby the presence of an interaction between the test molecule and the nucleotide sequence or protein identifies the test molecule as a candidate molecule that modulates cell proliferation.
51. The method of claim 50, wherein the system is an animal.
52. The method of claim 50, wherein the system is a cell.
53. The method of claim 50, wherein the test molecule comprises an antibody or antibody fragment that specifically binds the protein encoded by the nucleotide sequence of (i), (ii), (iii), or (iv).
54. A method for treating a cancer of a tissue listed in Table I in a subject, which comprises administering a candidate molecule identified by the method of claim 50 to a subject in need thereof, whereby the candidate molecule treats a cancer of a tissue listed in Table I in the subject.
55. A method for identifying a candidate therapeutic for treating a cancer of a tissue listed in Table I, which comprises:
(a) introducing a test molecule to a system which comprises a nucleic acid comprising a nucleotide sequence selected from the group consisting of:
(i) the nucleotide sequence of SEQ ID NO:1;
(ii) a nucleotide sequence which encodes a polypeptide consisting of the amino acid sequence set forth in Figure 3;
(iii) a nucleotide sequence which encodes a polypeptide that is 90% or more identical to the amino acid sequence set forth in Figure 3; and (iv) a fragment of a nucleotide sequence of (i), (ii), or (iii); or introducing a test molecule to a system which comprises a protein encoded by a nucleotide sequence of (i), (ii), (iii), or (iv); and (b) determining the presence or absence of an interaction between the test molecule and the nucleotide sequence or protein, whereby the presence of an interaction between the test molecule and the nucleotide sequence or protein identifies the test molecule as a candidate therapeutic for treating a cancer of a tissue listed in Table I.
56. The method of claim 55, wherein the system is an animal.
57. The method of claim 55, wherein the system is a cell.
58. The method of claim 55, wherein the test molecule comprises an antibody or antibody fragment that specifically binds the protein encoded by the nucleotide sequence of (i), (ii), (iii), or (iv).
Applications Claiming Priority (3)
| Application Number | Priority Date | Filing Date | Title |
|---|---|---|---|
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| PCT/US2004/013568 WO2004098515A2 (en) | 2003-04-30 | 2004-04-30 | Nucleic acids and corresponding proteins entitled 109p1d4 useful in treatment and detection of cancer |
Publications (2)
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| CA2522994A1 true CA2522994A1 (en) | 2004-11-18 |
| CA2522994C CA2522994C (en) | 2012-09-25 |
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| AU (2) | AU2004235755A1 (en) |
| CA (1) | CA2522994C (en) |
| WO (1) | WO2004098515A2 (en) |
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| US7117033B2 (en) | 2000-05-08 | 2006-10-03 | Brainsgate, Ltd. | Stimulation for acute conditions |
| US7561919B2 (en) | 2002-11-14 | 2009-07-14 | Brainsgate Ltd. | SPG stimulation via the greater palatine canal |
| US9233245B2 (en) | 2004-02-20 | 2016-01-12 | Brainsgate Ltd. | SPG stimulation |
| US8055347B2 (en) | 2005-08-19 | 2011-11-08 | Brainsgate Ltd. | Stimulation for treating brain events and other conditions |
| US8010189B2 (en) | 2004-02-20 | 2011-08-30 | Brainsgate Ltd. | SPG stimulation for treating complications of subarachnoid hemorrhage |
| US20070248535A1 (en) * | 2005-02-07 | 2007-10-25 | The Trustees Of Columbia University In The City Of New York | Methods to treat or prevent hormone-resistant prostate cancer using siRNA specific for protocadherin-PC, or other inhibitors of protocadherin-PC expression or activity |
| EA014886B1 (en) * | 2006-03-31 | 2011-02-28 | Элнилэм Фармасьютикалз, Инк. | Compositions and methods for inhibiting expression of eg5 gene |
| JP6236948B2 (en) * | 2013-07-17 | 2017-11-29 | 東ソー株式会社 | Antibody eluate and antibody purification method using the eluate |
| US9675796B2 (en) | 2013-11-10 | 2017-06-13 | Brainsgate Ltd. | Implant and delivery system for neural stimulator |
| US11596652B2 (en) | 2015-02-18 | 2023-03-07 | Enlivex Therapeutics R&D Ltd | Early apoptotic cells for use in treating sepsis |
| US11497767B2 (en) | 2015-02-18 | 2022-11-15 | Enlivex Therapeutics R&D Ltd | Combination immune therapy and cytokine control therapy for cancer treatment |
| US11318163B2 (en) | 2015-02-18 | 2022-05-03 | Enlivex Therapeutics Ltd | Combination immune therapy and cytokine control therapy for cancer treatment |
| US11000548B2 (en) | 2015-02-18 | 2021-05-11 | Enlivex Therapeutics Ltd | Combination immune therapy and cytokine control therapy for cancer treatment |
| IL284985B2 (en) | 2015-02-18 | 2023-03-01 | Enlivex Therapeutics R& D Ltd | Combination immune therapy and cytokine control therapy for cancer treatment |
| US11304976B2 (en) | 2015-02-18 | 2022-04-19 | Enlivex Therapeutics Ltd | Combination immune therapy and cytokine control therapy for cancer treatment |
| CA2982452A1 (en) | 2015-04-21 | 2016-10-27 | Enlivex Therapeutics Ltd. | Therapeutic pooled blood apoptotic cell preparations and uses thereof |
| EP3093043B1 (en) | 2015-05-13 | 2018-11-14 | Brainsgate Ltd. | Implant and delivery system for neural stimulator |
| US11730761B2 (en) | 2016-02-18 | 2023-08-22 | Enlivex Therapeutics Rdo Ltd | Combination immune therapy and cytokine control therapy for cancer treatment |
| TWI795381B (en) * | 2016-12-21 | 2023-03-11 | 比利時商健生藥品公司 | Pyrazole derivatives as malt1 inhibitors |
| AU2020226723B2 (en) | 2019-02-22 | 2025-01-23 | Janssen Pharmaceutica Nv | Crystalline form of 1-(1-oxo-1,2-dihydroisoquinolin-5-yl)-5-(trifluoromethyl)- |
| MA55593A (en) | 2019-04-11 | 2022-02-16 | Janssen Pharmaceutica Nv | PYRIDINE CYCLES CONTAINING DERIVATIVES SERVING AS MALT1 INHIBITORS |
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| EP1572987A4 (en) * | 2000-02-03 | 2005-11-30 | Nuvelo Inc | Novel nucleic acids and polypeptides |
| WO2002083921A2 (en) * | 2001-04-10 | 2002-10-24 | Agensys, Inc. | Nuleic acids and corresponding proteins useful in the detection and treatment of various cancers |
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- 2004-04-30 JP JP2006514206A patent/JP2007525183A/en active Pending
- 2004-04-30 WO PCT/US2004/013568 patent/WO2004098515A2/en not_active Ceased
- 2004-04-30 AU AU2004235755A patent/AU2004235755A1/en not_active Abandoned
- 2004-04-30 EP EP04760669A patent/EP1622571A4/en not_active Withdrawn
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Also Published As
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| AU2008212020B2 (en) | 2012-05-24 |
| CA2522994C (en) | 2012-09-25 |
| EP1622571A4 (en) | 2012-05-02 |
| JP2011152132A (en) | 2011-08-11 |
| AU2004235755A1 (en) | 2004-11-18 |
| WO2004098515A2 (en) | 2004-11-18 |
| EP1622571A2 (en) | 2006-02-08 |
| WO2004098515A3 (en) | 2009-04-30 |
| AU2008212020A1 (en) | 2008-09-25 |
| JP2007525183A (en) | 2007-09-06 |
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