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CA2571180A1 - Systemes informatiques et procedes pour la construction de classifieurs biologiques et leurs utilisations - Google Patents

Systemes informatiques et procedes pour la construction de classifieurs biologiques et leurs utilisations Download PDF

Info

Publication number
CA2571180A1
CA2571180A1 CA002571180A CA2571180A CA2571180A1 CA 2571180 A1 CA2571180 A1 CA 2571180A1 CA 002571180 A CA002571180 A CA 002571180A CA 2571180 A CA2571180 A CA 2571180A CA 2571180 A1 CA2571180 A1 CA 2571180A1
Authority
CA
Canada
Prior art keywords
molecular markers
classifiers
trait
subgroup
trait subgroup
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Abandoned
Application number
CA002571180A
Other languages
English (en)
Inventor
Choong-Chin Liew
Tom Yager
Adam Dempsey
Samuel Chao
Current Assignee (The listed assignees may be inaccurate. Google has not performed a legal analysis and makes no representation or warranty as to the accuracy of the list.)
StageZero Life Sciences Ltd
Original Assignee
Chondrogene Ltd
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Chondrogene Ltd filed Critical Chondrogene Ltd
Publication of CA2571180A1 publication Critical patent/CA2571180A1/fr
Abandoned legal-status Critical Current

Links

Classifications

    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B20/00—ICT specially adapted for functional genomics or proteomics, e.g. genotype-phenotype associations
    • G—PHYSICS
    • G06—COMPUTING OR CALCULATING; COUNTING
    • G06F—ELECTRIC DIGITAL DATA PROCESSING
    • G06F18/00—Pattern recognition
    • G06F18/20—Analysing
    • G06F18/21—Design or setup of recognition systems or techniques; Extraction of features in feature space; Blind source separation
    • G06F18/211—Selection of the most significant subset of features
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B20/00—ICT specially adapted for functional genomics or proteomics, e.g. genotype-phenotype associations
    • G16B20/20—Allele or variant detection, e.g. single nucleotide polymorphism [SNP] detection
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B40/00—ICT specially adapted for biostatistics; ICT specially adapted for bioinformatics-related machine learning or data mining, e.g. knowledge discovery or pattern finding
    • G16B40/10—Signal processing, e.g. from mass spectrometry [MS] or from PCR
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B40/00—ICT specially adapted for biostatistics; ICT specially adapted for bioinformatics-related machine learning or data mining, e.g. knowledge discovery or pattern finding
    • G16B40/20—Supervised data analysis
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B40/00—ICT specially adapted for biostatistics; ICT specially adapted for bioinformatics-related machine learning or data mining, e.g. knowledge discovery or pattern finding

Landscapes

  • Engineering & Computer Science (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Physics & Mathematics (AREA)
  • Health & Medical Sciences (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Medical Informatics (AREA)
  • Theoretical Computer Science (AREA)
  • Spectroscopy & Molecular Physics (AREA)
  • Bioinformatics & Computational Biology (AREA)
  • Evolutionary Biology (AREA)
  • Data Mining & Analysis (AREA)
  • Biophysics (AREA)
  • Biotechnology (AREA)
  • General Health & Medical Sciences (AREA)
  • Molecular Biology (AREA)
  • Evolutionary Computation (AREA)
  • Artificial Intelligence (AREA)
  • Computer Vision & Pattern Recognition (AREA)
  • Chemical & Material Sciences (AREA)
  • Public Health (AREA)
  • Bioethics (AREA)
  • Genetics & Genomics (AREA)
  • Databases & Information Systems (AREA)
  • Epidemiology (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Analytical Chemistry (AREA)
  • Software Systems (AREA)
  • Signal Processing (AREA)
  • General Engineering & Computer Science (AREA)
  • General Physics & Mathematics (AREA)
  • Investigating Or Analysing Biological Materials (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
CA002571180A 2004-06-19 2005-06-20 Systemes informatiques et procedes pour la construction de classifieurs biologiques et leurs utilisations Abandoned CA2571180A1 (fr)

Applications Claiming Priority (9)

Application Number Priority Date Filing Date Title
US58131204P 2004-06-19 2004-06-19
US60/581,312 2004-06-19
US58197704P 2004-06-21 2004-06-21
US60/581,977 2004-06-21
US64347505P 2005-01-12 2005-01-12
US60/643,475 2005-01-12
US66372205P 2005-03-22 2005-03-22
US60/663,722 2005-03-22
PCT/US2005/022071 WO2006002240A2 (fr) 2004-06-19 2005-06-20 Systemes informatiques et procedes pour la construction de classifieurs biologiques et leurs utilisations

Publications (1)

Publication Number Publication Date
CA2571180A1 true CA2571180A1 (fr) 2006-01-05

Family

ID=35782316

Family Applications (1)

Application Number Title Priority Date Filing Date
CA002571180A Abandoned CA2571180A1 (fr) 2004-06-19 2005-06-20 Systemes informatiques et procedes pour la construction de classifieurs biologiques et leurs utilisations

Country Status (3)

Country Link
EP (1) EP1766043A4 (fr)
CA (1) CA2571180A1 (fr)
WO (1) WO2006002240A2 (fr)

Cited By (1)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
WO2009111891A1 (fr) * 2008-03-12 2009-09-17 Mcmaster University Procédé de diagnostic pour l'allergie à la cacahouète

Families Citing this family (9)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
EP2128270B1 (fr) 2003-08-08 2012-10-03 Genenews Inc. Biomarqueurs d'ostéoarthrite et leur utilisations
US20080085524A1 (en) * 2006-08-15 2008-04-10 Prometheus Laboratories Inc. Methods for diagnosing irritable bowel syndrome
US20100094560A1 (en) * 2006-08-15 2010-04-15 Prometheus Laboratories Inc. Methods for diagnosing irritable bowel syndrome
JP5547639B2 (ja) 2007-10-16 2014-07-16 コーニンクレッカ フィリップス エヌ ヴェ 診断マーカーの推定
AU2010302955A1 (en) 2009-10-01 2012-05-17 Chipdx Llc System and method for classification of patients
US20200026822A1 (en) * 2018-07-22 2020-01-23 LifeNome Inc. System and method for polygenic phenotypic trait predisposition assessment using a combination of dynamic network analysis and machine learning
CN111223520B (zh) * 2019-11-20 2023-09-12 云南省烟草农业科学研究院 一种预测烟草尼古丁含量的全基因组选择模型及其应用
CN112232387B (zh) * 2020-09-29 2024-02-06 南京财经大学 基于lselm-rfe的粮食作物病害症状的有效特征识别方法
CN113096734B (zh) * 2021-05-11 2021-12-14 中国科学院水生生物研究所 一种筛选用于二倍体群体亲子鉴定的分子标记组合的方法

Family Cites Families (3)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US7324926B2 (en) * 1999-04-09 2008-01-29 Whitehead Institute For Biomedical Research Methods for predicting chemosensitivity or chemoresistance
IL157872A0 (en) * 2001-03-12 2004-03-28 Monogen Inc A panel for detecting a generic disease state containing a plurality of probes and using cell-based diagnosis
JP2006514554A (ja) * 2002-11-21 2006-05-11 ワイス 腎細胞癌および他の固形腫瘍の診断法

Cited By (1)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
WO2009111891A1 (fr) * 2008-03-12 2009-09-17 Mcmaster University Procédé de diagnostic pour l'allergie à la cacahouète

Also Published As

Publication number Publication date
WO2006002240A2 (fr) 2006-01-05
WO2006002240A8 (fr) 2006-10-26
WO2006002240A3 (fr) 2006-06-15
EP1766043A4 (fr) 2012-05-30
EP1766043A2 (fr) 2007-03-28

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Legal Events

Date Code Title Description
EEER Examination request
FZDC Discontinued application reinstated
FZDE Discontinued

Effective date: 20140613