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BRPI0708784A2 - análise de interação de ácidos nucléicos - Google Patents

análise de interação de ácidos nucléicos Download PDF

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Publication number
BRPI0708784A2
BRPI0708784A2 BRPI0708784-5A BRPI0708784A BRPI0708784A2 BR PI0708784 A2 BRPI0708784 A2 BR PI0708784A2 BR PI0708784 A BRPI0708784 A BR PI0708784A BR PI0708784 A2 BRPI0708784 A2 BR PI0708784A2
Authority
BR
Brazil
Prior art keywords
polynucleotide
marker
oligonucleotide
polynucleotides
nucleic acid
Prior art date
Application number
BRPI0708784-5A
Other languages
English (en)
Portuguese (pt)
Inventor
Yijun Ruan
Melissa Jane Fullwood
Chia Lin Wei
Original Assignee
Agency Science Tech & Res
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Agency Science Tech & Res filed Critical Agency Science Tech & Res
Publication of BRPI0708784A2 publication Critical patent/BRPI0708784A2/pt

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    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12NMICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N15/00Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
    • C12N15/09Recombinant DNA-technology
    • C12N15/10Processes for the isolation, preparation or purification of DNA or RNA
    • C12N15/1034Isolating an individual clone by screening libraries
    • C12N15/1065Preparation or screening of tagged libraries, e.g. tagged microorganisms by STM-mutagenesis, tagged polynucleotides, gene tags
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12NMICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N15/00Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
    • C12N15/09Recombinant DNA-technology
    • C12N15/63Introduction of foreign genetic material using vectors; Vectors; Use of hosts therefor; Regulation of expression
    • C12N15/66General methods for inserting a gene into a vector to form a recombinant vector using cleavage and ligation; Use of non-functional linkers or adaptors, e.g. linkers containing the sequence for a restriction endonuclease
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6804Nucleic acid analysis using immunogens
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q2521/00Reaction characterised by the enzymatic activity
    • C12Q2521/30Phosphoric diester hydrolysing, i.e. nuclease
    • C12Q2521/313Type II endonucleases, i.e. cutting outside recognition site
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q2523/00Reactions characterised by treatment of reaction samples
    • C12Q2523/10Characterised by chemical treatment
    • C12Q2523/101Crosslinking agents, e.g. psoralen
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q2525/00Reactions involving modified oligonucleotides, nucleic acids, or nucleotides
    • C12Q2525/10Modifications characterised by
    • C12Q2525/131Modifications characterised by incorporating a restriction site
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q2525/00Reactions involving modified oligonucleotides, nucleic acids, or nucleotides
    • C12Q2525/10Modifications characterised by
    • C12Q2525/191Modifications characterised by incorporating an adaptor
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q2525/00Reactions involving modified oligonucleotides, nucleic acids, or nucleotides
    • C12Q2525/10Modifications characterised by
    • C12Q2525/197Modifications characterised by incorporating a spacer/coupling moiety
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q2531/00Reactions of nucleic acids characterised by
    • C12Q2531/10Reactions of nucleic acids characterised by the purpose being amplify/increase the copy number of target nucleic acid
    • C12Q2531/113PCR

Landscapes

  • Chemical & Material Sciences (AREA)
  • Health & Medical Sciences (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Genetics & Genomics (AREA)
  • Engineering & Computer Science (AREA)
  • Organic Chemistry (AREA)
  • Zoology (AREA)
  • Wood Science & Technology (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Biotechnology (AREA)
  • General Engineering & Computer Science (AREA)
  • Biomedical Technology (AREA)
  • Molecular Biology (AREA)
  • Physics & Mathematics (AREA)
  • Microbiology (AREA)
  • Biophysics (AREA)
  • Biochemistry (AREA)
  • General Health & Medical Sciences (AREA)
  • Immunology (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Analytical Chemistry (AREA)
  • Plant Pathology (AREA)
  • Bioinformatics & Computational Biology (AREA)
  • Pathology (AREA)
  • Crystallography & Structural Chemistry (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
  • Enzymes And Modification Thereof (AREA)
BRPI0708784-5A 2006-03-13 2007-03-09 análise de interação de ácidos nucléicos BRPI0708784A2 (pt)

Applications Claiming Priority (3)

Application Number Priority Date Filing Date Title
US11/373,519 US8071296B2 (en) 2006-03-13 2006-03-13 Nucleic acid interaction analysis
US11/373,519 2006-03-13
PCT/SG2007/000069 WO2007106047A1 (fr) 2006-03-13 2007-03-09 Analyse d'interaction d'acide nucléique

Publications (1)

Publication Number Publication Date
BRPI0708784A2 true BRPI0708784A2 (pt) 2011-07-12

Family

ID=38232601

Family Applications (1)

Application Number Title Priority Date Filing Date
BRPI0708784-5A BRPI0708784A2 (pt) 2006-03-13 2007-03-09 análise de interação de ácidos nucléicos

Country Status (10)

Country Link
US (1) US8071296B2 (fr)
EP (1) EP1835038B1 (fr)
JP (1) JP2007289152A (fr)
KR (1) KR20080102301A (fr)
CN (1) CN101410516B (fr)
AU (1) AU2007225499A1 (fr)
BR (1) BRPI0708784A2 (fr)
CA (1) CA2647935A1 (fr)
TW (1) TW200813220A (fr)
WO (1) WO2007106047A1 (fr)

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EP2202322A1 (fr) 2003-10-31 2010-06-30 AB Advanced Genetic Analysis Corporation Procédés de production d'étiquette appariée à partir d'une séquence d'acide nucléique et leurs procédés d'utilisation
US8071296B2 (en) 2006-03-13 2011-12-06 Agency For Science, Technology And Research Nucleic acid interaction analysis
CN102016068A (zh) 2008-01-09 2011-04-13 生命科技公司 制备用于核酸测序的配对标签文库的方法
WO2012044847A1 (fr) 2010-10-01 2012-04-05 Life Technologies Corporation Adaptateurs d'acides nucléiques et leurs utilisations
US8263367B2 (en) * 2008-01-25 2012-09-11 Agency For Science, Technology And Research Nucleic acid interaction analysis
US9434985B2 (en) 2008-09-25 2016-09-06 University Of Massachusetts Methods of identifying interactions between genomic loci
US8481699B2 (en) * 2009-07-14 2013-07-09 Academia Sinica Multiplex barcoded Paired-End ditag (mbPED) library construction for ultra high throughput sequencing
US8574832B2 (en) * 2010-02-03 2013-11-05 Massachusetts Institute Of Technology Methods for preparing sequencing libraries
US9029103B2 (en) * 2010-08-27 2015-05-12 Illumina Cambridge Limited Methods for sequencing polynucleotides
US8663919B2 (en) 2011-05-18 2014-03-04 Life Technologies Corporation Chromosome conformation analysis
CN102427171A (zh) * 2011-07-29 2012-04-25 中国兵器工业第二○六研究所 Ka波段平板缝隙阵天线单脉冲馈电网络
WO2013070167A1 (fr) * 2011-11-10 2013-05-16 Neus Visa Utilisation d'un complexe adn-anticorps synthétique en tant que référence externe pour une immunoprécipitation de chromatine
GB2519255B (en) 2013-02-01 2016-01-06 Univ California Methods for genome assembly and haplotype phasing
US9411930B2 (en) 2013-02-01 2016-08-09 The Regents Of The University Of California Methods for genome assembly and haplotype phasing
KR102310441B1 (ko) * 2013-09-05 2021-10-07 더 잭슨 래보라토리 Rna-염색질 상호작용 분석용 조성물 및 이의 용도
US10526641B2 (en) 2014-08-01 2020-01-07 Dovetail Genomics, Llc Tagging nucleic acids for sequence assembly
KR102721363B1 (ko) 2015-02-17 2024-10-23 더브테일 제노믹스 엘엘씨 핵산 서열 어셈블리
WO2016154540A1 (fr) 2015-03-26 2016-09-29 Dovetail Genomics Llc Conservation de la liaison physique dans le stockage d'adn
US12018314B2 (en) 2015-07-02 2024-06-25 Arima Genomics, Inc. Accurate molecular deconvolution of mixture samples
WO2017059239A1 (fr) * 2015-10-02 2017-04-06 Arizona Board Of Regents On Behalf Of Arizona State University Procédés de traitement de matrices biopolymères
AU2016341198B2 (en) 2015-10-19 2023-03-09 Dovetail Genomics, Llc Methods for genome assembly, haplotype phasing, and target independent nucleic acid detection
US10975417B2 (en) 2016-02-23 2021-04-13 Dovetail Genomics, Llc Generation of phased read-sets for genome assembly and haplotype phasing
SG11201809996QA (en) 2016-05-12 2018-12-28 Agency Science Tech & Res Ribonucleic acid (rna) interactions
CN109477101B (zh) 2016-05-13 2022-11-18 多弗泰尔基因组学有限责任公司 从保存的样品中回收长范围连锁信息
WO2019152543A1 (fr) 2018-01-31 2019-08-08 Dovetail Genomics, Llc Préparation d'échantillon pour récupération de liaison d'adn
CN113272441A (zh) 2018-11-20 2021-08-17 阿瑞玛基因组学公司 保留空间邻近连续性信息的制备核酸的方法和组合物
CN119139470A (zh) * 2024-06-14 2024-12-17 北京市肿瘤防治研究所 葡萄球菌属在肿瘤转移中的作用

Family Cites Families (21)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US4766072A (en) 1985-07-17 1988-08-23 Promega Corporation Vectors for in vitro production of RNA copies of either strand of a cloned DNA sequence
US5866330A (en) 1995-09-12 1999-02-02 The Johns Hopkins University School Of Medicine Method for serial analysis of gene expression
US6136537A (en) * 1998-02-23 2000-10-24 Macevicz; Stephen C. Gene expression analysis
US6054276A (en) 1998-02-23 2000-04-25 Macevicz; Stephen C. DNA restriction site mapping
DE60045796D1 (de) 1999-09-01 2011-05-12 Whitehead Biomedical Inst Gesamt-chromosom analyse von protein-dns wechselwirkungen
US7244559B2 (en) 1999-09-16 2007-07-17 454 Life Sciences Corporation Method of sequencing a nucleic acid
WO2001048247A2 (fr) 1999-12-29 2001-07-05 Arch Development Corporation Procede servant a generer des fragments d'adnc plus longs a partir d'etiquettes de sage afin d'identifier des genes
WO2002010438A2 (fr) 2000-07-28 2002-02-07 The Johns Hopkins University Analyse en serie de l'expression de transcrits au moyen de longs marqueurs
US20060292560A1 (en) 2000-08-14 2006-12-28 Robert Burgess Transcription factor target gene discovery
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WO2004065628A1 (fr) 2003-01-21 2004-08-05 Guoliang Fu Detection multiplex quantitative d'acides nucleiques
AU2004257191B2 (en) 2003-07-03 2009-05-07 The Regents Of The University Of California Genome mapping of functional DNA elements and cellular proteins
US8222005B2 (en) 2003-09-17 2012-07-17 Agency For Science, Technology And Research Method for gene identification signature (GIS) analysis
EP2202322A1 (fr) * 2003-10-31 2010-06-30 AB Advanced Genetic Analysis Corporation Procédés de production d'étiquette appariée à partir d'une séquence d'acide nucléique et leurs procédés d'utilisation
CA2557841A1 (fr) * 2004-02-27 2005-09-09 President And Fellows Of Harvard College Sequencage in situ en fluorescence de billes par la technologie polony
US20080096255A1 (en) 2004-07-02 2008-04-24 Matthias Harbers Method for Preparing Sequence Tags
US8005621B2 (en) 2004-09-13 2011-08-23 Agency For Science Technology And Research Transcript mapping method
WO2007057785A2 (fr) 2005-05-24 2007-05-24 Rolf Ohisson Methodes d'analyse d'interactions entre au moins sequences d'acides nucleiques
US8428882B2 (en) 2005-06-14 2013-04-23 Agency For Science, Technology And Research Method of processing and/or genome mapping of diTag sequences
PL1899488T3 (pl) 2005-07-04 2016-03-31 Erasmus Univ Medical Center Test uchwytu konformacji chromosomu na czipie (4C)
US8071296B2 (en) 2006-03-13 2011-12-06 Agency For Science, Technology And Research Nucleic acid interaction analysis

Also Published As

Publication number Publication date
US8071296B2 (en) 2011-12-06
EP1835038B1 (fr) 2014-06-04
TW200813220A (en) 2008-03-16
AU2007225499A1 (en) 2007-09-20
WO2007106047A1 (fr) 2007-09-20
CN101410516B (zh) 2012-05-30
WO2007106047A8 (fr) 2009-07-23
EP1835038A1 (fr) 2007-09-19
CN101410516A (zh) 2009-04-15
KR20080102301A (ko) 2008-11-24
JP2007289152A (ja) 2007-11-08
CA2647935A1 (fr) 2007-09-20
US20070238101A1 (en) 2007-10-11

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Legal Events

Date Code Title Description
B11A Dismissal acc. art.33 of ipl - examination not requested within 36 months of filing
B11Y Definitive dismissal - extension of time limit for request of examination expired [chapter 11.1.1 patent gazette]