BRPI0708784A2 - análise de interação de ácidos nucléicos - Google Patents
análise de interação de ácidos nucléicos Download PDFInfo
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- BRPI0708784A2 BRPI0708784A2 BRPI0708784-5A BRPI0708784A BRPI0708784A2 BR PI0708784 A2 BRPI0708784 A2 BR PI0708784A2 BR PI0708784 A BRPI0708784 A BR PI0708784A BR PI0708784 A2 BRPI0708784 A2 BR PI0708784A2
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- polynucleotide
- marker
- oligonucleotide
- polynucleotides
- nucleic acid
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Classifications
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- C—CHEMISTRY; METALLURGY
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- C12N15/00—Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
- C12N15/09—Recombinant DNA-technology
- C12N15/10—Processes for the isolation, preparation or purification of DNA or RNA
- C12N15/1034—Isolating an individual clone by screening libraries
- C12N15/1065—Preparation or screening of tagged libraries, e.g. tagged microorganisms by STM-mutagenesis, tagged polynucleotides, gene tags
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- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
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- C12N15/00—Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
- C12N15/09—Recombinant DNA-technology
- C12N15/63—Introduction of foreign genetic material using vectors; Vectors; Use of hosts therefor; Regulation of expression
- C12N15/66—General methods for inserting a gene into a vector to form a recombinant vector using cleavage and ligation; Use of non-functional linkers or adaptors, e.g. linkers containing the sequence for a restriction endonuclease
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- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6804—Nucleic acid analysis using immunogens
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- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q2521/00—Reaction characterised by the enzymatic activity
- C12Q2521/30—Phosphoric diester hydrolysing, i.e. nuclease
- C12Q2521/313—Type II endonucleases, i.e. cutting outside recognition site
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q2523/00—Reactions characterised by treatment of reaction samples
- C12Q2523/10—Characterised by chemical treatment
- C12Q2523/101—Crosslinking agents, e.g. psoralen
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q2525/00—Reactions involving modified oligonucleotides, nucleic acids, or nucleotides
- C12Q2525/10—Modifications characterised by
- C12Q2525/131—Modifications characterised by incorporating a restriction site
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q2525/00—Reactions involving modified oligonucleotides, nucleic acids, or nucleotides
- C12Q2525/10—Modifications characterised by
- C12Q2525/191—Modifications characterised by incorporating an adaptor
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- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
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- C12Q2525/00—Reactions involving modified oligonucleotides, nucleic acids, or nucleotides
- C12Q2525/10—Modifications characterised by
- C12Q2525/197—Modifications characterised by incorporating a spacer/coupling moiety
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- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
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- C12Q2531/00—Reactions of nucleic acids characterised by
- C12Q2531/10—Reactions of nucleic acids characterised by the purpose being amplify/increase the copy number of target nucleic acid
- C12Q2531/113—PCR
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- Chemical & Material Sciences (AREA)
- Health & Medical Sciences (AREA)
- Life Sciences & Earth Sciences (AREA)
- Genetics & Genomics (AREA)
- Engineering & Computer Science (AREA)
- Organic Chemistry (AREA)
- Zoology (AREA)
- Wood Science & Technology (AREA)
- Bioinformatics & Cheminformatics (AREA)
- Biotechnology (AREA)
- General Engineering & Computer Science (AREA)
- Biomedical Technology (AREA)
- Molecular Biology (AREA)
- Physics & Mathematics (AREA)
- Microbiology (AREA)
- Biophysics (AREA)
- Biochemistry (AREA)
- General Health & Medical Sciences (AREA)
- Immunology (AREA)
- Proteomics, Peptides & Aminoacids (AREA)
- Analytical Chemistry (AREA)
- Plant Pathology (AREA)
- Bioinformatics & Computational Biology (AREA)
- Pathology (AREA)
- Crystallography & Structural Chemistry (AREA)
- Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
- Enzymes And Modification Thereof (AREA)
Applications Claiming Priority (3)
| Application Number | Priority Date | Filing Date | Title |
|---|---|---|---|
| US11/373,519 US8071296B2 (en) | 2006-03-13 | 2006-03-13 | Nucleic acid interaction analysis |
| US11/373,519 | 2006-03-13 | ||
| PCT/SG2007/000069 WO2007106047A1 (fr) | 2006-03-13 | 2007-03-09 | Analyse d'interaction d'acide nucléique |
Publications (1)
| Publication Number | Publication Date |
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| BRPI0708784A2 true BRPI0708784A2 (pt) | 2011-07-12 |
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| Application Number | Title | Priority Date | Filing Date |
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| BRPI0708784-5A BRPI0708784A2 (pt) | 2006-03-13 | 2007-03-09 | análise de interação de ácidos nucléicos |
Country Status (10)
| Country | Link |
|---|---|
| US (1) | US8071296B2 (fr) |
| EP (1) | EP1835038B1 (fr) |
| JP (1) | JP2007289152A (fr) |
| KR (1) | KR20080102301A (fr) |
| CN (1) | CN101410516B (fr) |
| AU (1) | AU2007225499A1 (fr) |
| BR (1) | BRPI0708784A2 (fr) |
| CA (1) | CA2647935A1 (fr) |
| TW (1) | TW200813220A (fr) |
| WO (1) | WO2007106047A1 (fr) |
Families Citing this family (27)
| Publication number | Priority date | Publication date | Assignee | Title |
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| EP2202322A1 (fr) | 2003-10-31 | 2010-06-30 | AB Advanced Genetic Analysis Corporation | Procédés de production d'étiquette appariée à partir d'une séquence d'acide nucléique et leurs procédés d'utilisation |
| US8071296B2 (en) | 2006-03-13 | 2011-12-06 | Agency For Science, Technology And Research | Nucleic acid interaction analysis |
| CN102016068A (zh) | 2008-01-09 | 2011-04-13 | 生命科技公司 | 制备用于核酸测序的配对标签文库的方法 |
| WO2012044847A1 (fr) | 2010-10-01 | 2012-04-05 | Life Technologies Corporation | Adaptateurs d'acides nucléiques et leurs utilisations |
| US8263367B2 (en) * | 2008-01-25 | 2012-09-11 | Agency For Science, Technology And Research | Nucleic acid interaction analysis |
| US9434985B2 (en) | 2008-09-25 | 2016-09-06 | University Of Massachusetts | Methods of identifying interactions between genomic loci |
| US8481699B2 (en) * | 2009-07-14 | 2013-07-09 | Academia Sinica | Multiplex barcoded Paired-End ditag (mbPED) library construction for ultra high throughput sequencing |
| US8574832B2 (en) * | 2010-02-03 | 2013-11-05 | Massachusetts Institute Of Technology | Methods for preparing sequencing libraries |
| US9029103B2 (en) * | 2010-08-27 | 2015-05-12 | Illumina Cambridge Limited | Methods for sequencing polynucleotides |
| US8663919B2 (en) | 2011-05-18 | 2014-03-04 | Life Technologies Corporation | Chromosome conformation analysis |
| CN102427171A (zh) * | 2011-07-29 | 2012-04-25 | 中国兵器工业第二○六研究所 | Ka波段平板缝隙阵天线单脉冲馈电网络 |
| WO2013070167A1 (fr) * | 2011-11-10 | 2013-05-16 | Neus Visa | Utilisation d'un complexe adn-anticorps synthétique en tant que référence externe pour une immunoprécipitation de chromatine |
| GB2519255B (en) | 2013-02-01 | 2016-01-06 | Univ California | Methods for genome assembly and haplotype phasing |
| US9411930B2 (en) | 2013-02-01 | 2016-08-09 | The Regents Of The University Of California | Methods for genome assembly and haplotype phasing |
| KR102310441B1 (ko) * | 2013-09-05 | 2021-10-07 | 더 잭슨 래보라토리 | Rna-염색질 상호작용 분석용 조성물 및 이의 용도 |
| US10526641B2 (en) | 2014-08-01 | 2020-01-07 | Dovetail Genomics, Llc | Tagging nucleic acids for sequence assembly |
| KR102721363B1 (ko) | 2015-02-17 | 2024-10-23 | 더브테일 제노믹스 엘엘씨 | 핵산 서열 어셈블리 |
| WO2016154540A1 (fr) | 2015-03-26 | 2016-09-29 | Dovetail Genomics Llc | Conservation de la liaison physique dans le stockage d'adn |
| US12018314B2 (en) | 2015-07-02 | 2024-06-25 | Arima Genomics, Inc. | Accurate molecular deconvolution of mixture samples |
| WO2017059239A1 (fr) * | 2015-10-02 | 2017-04-06 | Arizona Board Of Regents On Behalf Of Arizona State University | Procédés de traitement de matrices biopolymères |
| AU2016341198B2 (en) | 2015-10-19 | 2023-03-09 | Dovetail Genomics, Llc | Methods for genome assembly, haplotype phasing, and target independent nucleic acid detection |
| US10975417B2 (en) | 2016-02-23 | 2021-04-13 | Dovetail Genomics, Llc | Generation of phased read-sets for genome assembly and haplotype phasing |
| SG11201809996QA (en) | 2016-05-12 | 2018-12-28 | Agency Science Tech & Res | Ribonucleic acid (rna) interactions |
| CN109477101B (zh) | 2016-05-13 | 2022-11-18 | 多弗泰尔基因组学有限责任公司 | 从保存的样品中回收长范围连锁信息 |
| WO2019152543A1 (fr) | 2018-01-31 | 2019-08-08 | Dovetail Genomics, Llc | Préparation d'échantillon pour récupération de liaison d'adn |
| CN113272441A (zh) | 2018-11-20 | 2021-08-17 | 阿瑞玛基因组学公司 | 保留空间邻近连续性信息的制备核酸的方法和组合物 |
| CN119139470A (zh) * | 2024-06-14 | 2024-12-17 | 北京市肿瘤防治研究所 | 葡萄球菌属在肿瘤转移中的作用 |
Family Cites Families (21)
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| US4766072A (en) | 1985-07-17 | 1988-08-23 | Promega Corporation | Vectors for in vitro production of RNA copies of either strand of a cloned DNA sequence |
| US5866330A (en) | 1995-09-12 | 1999-02-02 | The Johns Hopkins University School Of Medicine | Method for serial analysis of gene expression |
| US6136537A (en) * | 1998-02-23 | 2000-10-24 | Macevicz; Stephen C. | Gene expression analysis |
| US6054276A (en) | 1998-02-23 | 2000-04-25 | Macevicz; Stephen C. | DNA restriction site mapping |
| DE60045796D1 (de) | 1999-09-01 | 2011-05-12 | Whitehead Biomedical Inst | Gesamt-chromosom analyse von protein-dns wechselwirkungen |
| US7244559B2 (en) | 1999-09-16 | 2007-07-17 | 454 Life Sciences Corporation | Method of sequencing a nucleic acid |
| WO2001048247A2 (fr) | 1999-12-29 | 2001-07-05 | Arch Development Corporation | Procede servant a generer des fragments d'adnc plus longs a partir d'etiquettes de sage afin d'identifier des genes |
| WO2002010438A2 (fr) | 2000-07-28 | 2002-02-07 | The Johns Hopkins University | Analyse en serie de l'expression de transcrits au moyen de longs marqueurs |
| US20060292560A1 (en) | 2000-08-14 | 2006-12-28 | Robert Burgess | Transcription factor target gene discovery |
| GB0228289D0 (en) | 2002-12-04 | 2003-01-08 | Genome Inst Of Singapore Nat U | Method |
| WO2004065628A1 (fr) | 2003-01-21 | 2004-08-05 | Guoliang Fu | Detection multiplex quantitative d'acides nucleiques |
| AU2004257191B2 (en) | 2003-07-03 | 2009-05-07 | The Regents Of The University Of California | Genome mapping of functional DNA elements and cellular proteins |
| US8222005B2 (en) | 2003-09-17 | 2012-07-17 | Agency For Science, Technology And Research | Method for gene identification signature (GIS) analysis |
| EP2202322A1 (fr) * | 2003-10-31 | 2010-06-30 | AB Advanced Genetic Analysis Corporation | Procédés de production d'étiquette appariée à partir d'une séquence d'acide nucléique et leurs procédés d'utilisation |
| CA2557841A1 (fr) * | 2004-02-27 | 2005-09-09 | President And Fellows Of Harvard College | Sequencage in situ en fluorescence de billes par la technologie polony |
| US20080096255A1 (en) | 2004-07-02 | 2008-04-24 | Matthias Harbers | Method for Preparing Sequence Tags |
| US8005621B2 (en) | 2004-09-13 | 2011-08-23 | Agency For Science Technology And Research | Transcript mapping method |
| WO2007057785A2 (fr) | 2005-05-24 | 2007-05-24 | Rolf Ohisson | Methodes d'analyse d'interactions entre au moins sequences d'acides nucleiques |
| US8428882B2 (en) | 2005-06-14 | 2013-04-23 | Agency For Science, Technology And Research | Method of processing and/or genome mapping of diTag sequences |
| PL1899488T3 (pl) | 2005-07-04 | 2016-03-31 | Erasmus Univ Medical Center | Test uchwytu konformacji chromosomu na czipie (4C) |
| US8071296B2 (en) | 2006-03-13 | 2011-12-06 | Agency For Science, Technology And Research | Nucleic acid interaction analysis |
-
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- 2006-03-13 US US11/373,519 patent/US8071296B2/en not_active Expired - Fee Related
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2007
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- 2007-03-09 BR BRPI0708784-5A patent/BRPI0708784A2/pt not_active Application Discontinuation
- 2007-03-09 KR KR1020087024855A patent/KR20080102301A/ko not_active Ceased
- 2007-03-09 AU AU2007225499A patent/AU2007225499A1/en not_active Abandoned
- 2007-03-09 CN CN2007800091831A patent/CN101410516B/zh not_active Expired - Fee Related
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- 2007-03-09 CA CA002647935A patent/CA2647935A1/fr not_active Abandoned
- 2007-03-12 EP EP07251006.8A patent/EP1835038B1/fr not_active Not-in-force
- 2007-03-13 JP JP2007063117A patent/JP2007289152A/ja active Pending
Also Published As
| Publication number | Publication date |
|---|---|
| US8071296B2 (en) | 2011-12-06 |
| EP1835038B1 (fr) | 2014-06-04 |
| TW200813220A (en) | 2008-03-16 |
| AU2007225499A1 (en) | 2007-09-20 |
| WO2007106047A1 (fr) | 2007-09-20 |
| CN101410516B (zh) | 2012-05-30 |
| WO2007106047A8 (fr) | 2009-07-23 |
| EP1835038A1 (fr) | 2007-09-19 |
| CN101410516A (zh) | 2009-04-15 |
| KR20080102301A (ko) | 2008-11-24 |
| JP2007289152A (ja) | 2007-11-08 |
| CA2647935A1 (fr) | 2007-09-20 |
| US20070238101A1 (en) | 2007-10-11 |
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