AU2017339581A1 - Immunosuppression-reverting oligonucleotides inhibiting the expression of CD73 - Google Patents
Immunosuppression-reverting oligonucleotides inhibiting the expression of CD73 Download PDFInfo
- Publication number
- AU2017339581A1 AU2017339581A1 AU2017339581A AU2017339581A AU2017339581A1 AU 2017339581 A1 AU2017339581 A1 AU 2017339581A1 AU 2017339581 A AU2017339581 A AU 2017339581A AU 2017339581 A AU2017339581 A AU 2017339581A AU 2017339581 A1 AU2017339581 A1 AU 2017339581A1
- Authority
- AU
- Australia
- Prior art keywords
- seq
- oligonucleotide
- cells
- cancer
- pharmaceutical composition
- Prior art date
- Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
- Abandoned
Links
- 108091034117 Oligonucleotide Proteins 0.000 title claims abstract description 141
- 101000678236 Homo sapiens 5'-nucleotidase Proteins 0.000 title claims abstract description 85
- 102100022464 5'-nucleotidase Human genes 0.000 title claims abstract description 83
- 206010062016 Immunosuppression Diseases 0.000 title claims abstract description 16
- JLCPHMBAVCMARE-UHFFFAOYSA-N [3-[[3-[[3-[[3-[[3-[[3-[[3-[[3-[[3-[[3-[[3-[[5-(2-amino-6-oxo-1H-purin-9-yl)-3-[[3-[[3-[[3-[[3-[[3-[[5-(2-amino-6-oxo-1H-purin-9-yl)-3-[[5-(2-amino-6-oxo-1H-purin-9-yl)-3-hydroxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(6-aminopurin-9-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(6-aminopurin-9-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(6-aminopurin-9-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(6-aminopurin-9-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(4-amino-2-oxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(6-aminopurin-9-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(6-aminopurin-9-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(4-amino-2-oxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(4-amino-2-oxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(4-amino-2-oxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(6-aminopurin-9-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(4-amino-2-oxopyrimidin-1-yl)oxolan-2-yl]methyl [5-(6-aminopurin-9-yl)-2-(hydroxymethyl)oxolan-3-yl] hydrogen phosphate Polymers Cc1cn(C2CC(OP(O)(=O)OCC3OC(CC3OP(O)(=O)OCC3OC(CC3O)n3cnc4c3nc(N)[nH]c4=O)n3cnc4c3nc(N)[nH]c4=O)C(COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3CO)n3cnc4c(N)ncnc34)n3ccc(N)nc3=O)n3cnc4c(N)ncnc34)n3ccc(N)nc3=O)n3ccc(N)nc3=O)n3ccc(N)nc3=O)n3cnc4c(N)ncnc34)n3cnc4c(N)ncnc34)n3cc(C)c(=O)[nH]c3=O)n3cc(C)c(=O)[nH]c3=O)n3ccc(N)nc3=O)n3cc(C)c(=O)[nH]c3=O)n3cnc4c3nc(N)[nH]c4=O)n3cnc4c(N)ncnc34)n3cnc4c(N)ncnc34)n3cnc4c(N)ncnc34)n3cnc4c(N)ncnc34)O2)c(=O)[nH]c1=O JLCPHMBAVCMARE-UHFFFAOYSA-N 0.000 title abstract description 21
- 230000002401 inhibitory effect Effects 0.000 title description 7
- 125000003729 nucleotide group Chemical group 0.000 claims abstract description 28
- 239000008194 pharmaceutical composition Substances 0.000 claims abstract description 27
- 239000002773 nucleotide Substances 0.000 claims abstract description 16
- 150000007523 nucleic acids Chemical group 0.000 claims abstract description 8
- 108091028043 Nucleic acid sequence Proteins 0.000 claims abstract description 4
- 210000004027 cell Anatomy 0.000 claims description 198
- 206010028980 Neoplasm Diseases 0.000 claims description 40
- 201000011510 cancer Diseases 0.000 claims description 18
- 150000003384 small molecules Chemical class 0.000 claims description 16
- 208000037265 diseases, disorders, signs and symptoms Diseases 0.000 claims description 11
- 238000000034 method Methods 0.000 claims description 10
- 210000001519 tissue Anatomy 0.000 claims description 10
- 230000001684 chronic effect Effects 0.000 claims description 8
- 208000035475 disorder Diseases 0.000 claims description 8
- 230000006028 immune-suppresssive effect Effects 0.000 claims description 8
- BASFCYQUMIYNBI-UHFFFAOYSA-N platinum Chemical compound [Pt] BASFCYQUMIYNBI-UHFFFAOYSA-N 0.000 claims description 8
- 206010006187 Breast cancer Diseases 0.000 claims description 7
- 208000026310 Breast neoplasm Diseases 0.000 claims description 7
- 102000002698 KIR Receptors Human genes 0.000 claims description 7
- 108010043610 KIR Receptors Proteins 0.000 claims description 7
- -1 CD 160 Proteins 0.000 claims description 6
- 102100029722 Ectonucleoside triphosphate diphosphohydrolase 1 Human genes 0.000 claims description 6
- 101001012447 Homo sapiens Ectonucleoside triphosphate diphosphohydrolase 1 Proteins 0.000 claims description 6
- 230000004936 stimulating effect Effects 0.000 claims description 6
- RYYWUUFWQRZTIU-UHFFFAOYSA-K thiophosphate Chemical compound [O-]P([O-])([O-])=S RYYWUUFWQRZTIU-UHFFFAOYSA-K 0.000 claims description 6
- 208000023275 Autoimmune disease Diseases 0.000 claims description 5
- 206010061535 Ovarian neoplasm Diseases 0.000 claims description 5
- 230000000973 chemotherapeutic effect Effects 0.000 claims description 5
- 102100029822 B- and T-lymphocyte attenuator Human genes 0.000 claims description 4
- 208000003174 Brain Neoplasms Diseases 0.000 claims description 4
- 102100027207 CD27 antigen Human genes 0.000 claims description 4
- 108010021064 CTLA-4 Antigen Proteins 0.000 claims description 4
- 229940045513 CTLA4 antagonist Drugs 0.000 claims description 4
- 102100034458 Hepatitis A virus cellular receptor 2 Human genes 0.000 claims description 4
- 101710083479 Hepatitis A virus cellular receptor 2 homolog Proteins 0.000 claims description 4
- 101000864344 Homo sapiens B- and T-lymphocyte attenuator Proteins 0.000 claims description 4
- 101000914511 Homo sapiens CD27 antigen Proteins 0.000 claims description 4
- 101001037256 Homo sapiens Indoleamine 2,3-dioxygenase 1 Proteins 0.000 claims description 4
- 101000831007 Homo sapiens T-cell immunoreceptor with Ig and ITIM domains Proteins 0.000 claims description 4
- 101000892398 Homo sapiens Tryptophan 2,3-dioxygenase Proteins 0.000 claims description 4
- 101000801234 Homo sapiens Tumor necrosis factor receptor superfamily member 18 Proteins 0.000 claims description 4
- 101000666896 Homo sapiens V-type immunoglobulin domain-containing suppressor of T-cell activation Proteins 0.000 claims description 4
- 102100040061 Indoleamine 2,3-dioxygenase 1 Human genes 0.000 claims description 4
- 108020003285 Isocitrate lyase Proteins 0.000 claims description 4
- 101150069255 KLRC1 gene Proteins 0.000 claims description 4
- 102000017578 LAG3 Human genes 0.000 claims description 4
- 101150030213 Lag3 gene Proteins 0.000 claims description 4
- 102100030301 MHC class I polypeptide-related sequence A Human genes 0.000 claims description 4
- 101100404845 Macaca mulatta NKG2A gene Proteins 0.000 claims description 4
- 102100022682 NKG2-A/NKG2-B type II integral membrane protein Human genes 0.000 claims description 4
- 101710089372 Programmed cell death protein 1 Proteins 0.000 claims description 4
- 108010017324 STAT3 Transcription Factor Proteins 0.000 claims description 4
- 102000004495 STAT3 Transcription Factor Human genes 0.000 claims description 4
- 101100215487 Sus scrofa ADRA2A gene Proteins 0.000 claims description 4
- 229940126547 T-cell immunoglobulin mucin-3 Drugs 0.000 claims description 4
- 102100024834 T-cell immunoreceptor with Ig and ITIM domains Human genes 0.000 claims description 4
- 102000004887 Transforming Growth Factor beta Human genes 0.000 claims description 4
- 108090001012 Transforming Growth Factor beta Proteins 0.000 claims description 4
- 102100040653 Tryptophan 2,3-dioxygenase Human genes 0.000 claims description 4
- 102100033728 Tumor necrosis factor receptor superfamily member 18 Human genes 0.000 claims description 4
- 102100038282 V-type immunoglobulin domain-containing suppressor of T-cell activation Human genes 0.000 claims description 4
- 230000001154 acute effect Effects 0.000 claims description 4
- 239000003937 drug carrier Substances 0.000 claims description 4
- IJJVMEJXYNJXOJ-UHFFFAOYSA-N fluquinconazole Chemical compound C=1C=C(Cl)C=C(Cl)C=1N1C(=O)C2=CC(F)=CC=C2N=C1N1C=NC=N1 IJJVMEJXYNJXOJ-UHFFFAOYSA-N 0.000 claims description 4
- SDUQYLNIPVEERB-QPPQHZFASA-N gemcitabine Chemical compound O=C1N=C(N)C=CN1[C@H]1C(F)(F)[C@H](O)[C@@H](CO)O1 SDUQYLNIPVEERB-QPPQHZFASA-N 0.000 claims description 4
- 229960005277 gemcitabine Drugs 0.000 claims description 4
- 208000005017 glioblastoma Diseases 0.000 claims description 4
- 208000026278 immune system disease Diseases 0.000 claims description 4
- 208000020816 lung neoplasm Diseases 0.000 claims description 4
- 230000003211 malignant effect Effects 0.000 claims description 4
- 239000010445 mica Substances 0.000 claims description 4
- 229910052618 mica group Inorganic materials 0.000 claims description 4
- 108020004707 nucleic acids Proteins 0.000 claims description 4
- 102000039446 nucleic acids Human genes 0.000 claims description 4
- 201000008968 osteosarcoma Diseases 0.000 claims description 4
- 239000000546 pharmaceutical excipient Substances 0.000 claims description 4
- 229910052697 platinum Inorganic materials 0.000 claims description 4
- 201000000849 skin cancer Diseases 0.000 claims description 4
- 206010041823 squamous cell carcinoma Diseases 0.000 claims description 4
- ZRKFYGHZFMAOKI-QMGMOQQFSA-N tgfbeta Chemical compound C([C@H](NC(=O)[C@H](C(C)C)NC(=O)CNC(=O)[C@H](CCC(O)=O)NC(=O)[C@H](CCCNC(N)=N)NC(=O)[C@H](CC(N)=O)NC(=O)[C@H](CC(C)C)NC(=O)[C@H]([C@@H](C)O)NC(=O)[C@H](CCC(O)=O)NC(=O)[C@H]([C@@H](C)O)NC(=O)[C@H](CC(C)C)NC(=O)CNC(=O)[C@H](C)NC(=O)[C@H](CO)NC(=O)[C@H](CCC(N)=O)NC(=O)[C@@H](NC(=O)[C@H](C)NC(=O)[C@H](C)NC(=O)[C@@H](NC(=O)[C@H](CC(C)C)NC(=O)[C@@H](N)CCSC)C(C)C)[C@@H](C)CC)C(=O)N[C@@H]([C@@H](C)O)C(=O)N[C@@H](C(C)C)C(=O)N[C@@H](CC=1C=CC=CC=1)C(=O)N[C@@H](C)C(=O)N1[C@@H](CCC1)C(=O)N[C@@H]([C@@H](C)O)C(=O)N[C@@H](CC(N)=O)C(=O)N[C@@H](CCC(O)=O)C(=O)N[C@@H](C)C(=O)N[C@@H](CC=1C=CC=CC=1)C(=O)N[C@@H](CCCNC(N)=N)C(=O)N[C@@H](C)C(=O)N[C@@H](CC(C)C)C(=O)N1[C@@H](CCC1)C(=O)N1[C@@H](CCC1)C(=O)N[C@@H](CCCNC(N)=N)C(=O)N[C@@H](CCC(O)=O)C(=O)N[C@@H](CCCNC(N)=N)C(=O)N[C@@H](CO)C(=O)N[C@@H](CCCNC(N)=N)C(=O)N[C@@H](CC(C)C)C(=O)N[C@@H](CC(C)C)C(O)=O)C1=CC=C(O)C=C1 ZRKFYGHZFMAOKI-QMGMOQQFSA-N 0.000 claims description 4
- 102100023990 60S ribosomal protein L17 Human genes 0.000 claims description 3
- 108010074708 B7-H1 Antigen Proteins 0.000 claims description 3
- 101001037261 Homo sapiens Indoleamine 2,3-dioxygenase 2 Proteins 0.000 claims description 3
- 102100040062 Indoleamine 2,3-dioxygenase 2 Human genes 0.000 claims description 3
- 208000020016 psychiatric disease Diseases 0.000 claims description 3
- 208000031261 Acute myeloid leukaemia Diseases 0.000 claims description 2
- 208000003200 Adenoma Diseases 0.000 claims description 2
- 206010001233 Adenoma benign Diseases 0.000 claims description 2
- 206010003571 Astrocytoma Diseases 0.000 claims description 2
- 208000032791 BCR-ABL1 positive chronic myelogenous leukemia Diseases 0.000 claims description 2
- 206010004146 Basal cell carcinoma Diseases 0.000 claims description 2
- 206010005949 Bone cancer Diseases 0.000 claims description 2
- 208000018084 Bone neoplasm Diseases 0.000 claims description 2
- 206010008263 Cervical dysplasia Diseases 0.000 claims description 2
- 208000010833 Chronic myeloid leukaemia Diseases 0.000 claims description 2
- 208000006168 Ewing Sarcoma Diseases 0.000 claims description 2
- 208000007569 Giant Cell Tumors Diseases 0.000 claims description 2
- 208000037147 Hypercalcaemia Diseases 0.000 claims description 2
- 208000005045 Interdigitating dendritic cell sarcoma Diseases 0.000 claims description 2
- 208000009164 Islet Cell Adenoma Diseases 0.000 claims description 2
- 208000007766 Kaposi sarcoma Diseases 0.000 claims description 2
- 206010058467 Lung neoplasm malignant Diseases 0.000 claims description 2
- 206010025323 Lymphomas Diseases 0.000 claims description 2
- 208000007054 Medullary Carcinoma Diseases 0.000 claims description 2
- 208000033761 Myelogenous Chronic BCR-ABL Positive Leukemia Diseases 0.000 claims description 2
- 208000033776 Myeloid Acute Leukemia Diseases 0.000 claims description 2
- 208000015914 Non-Hodgkin lymphomas Diseases 0.000 claims description 2
- 206010035226 Plasma cell myeloma Diseases 0.000 claims description 2
- 206010060862 Prostate cancer Diseases 0.000 claims description 2
- 208000000236 Prostatic Neoplasms Diseases 0.000 claims description 2
- 201000000582 Retinoblastoma Diseases 0.000 claims description 2
- 206010039491 Sarcoma Diseases 0.000 claims description 2
- 201000010208 Seminoma Diseases 0.000 claims description 2
- 208000000453 Skin Neoplasms Diseases 0.000 claims description 2
- 208000021712 Soft tissue sarcoma Diseases 0.000 claims description 2
- 208000008383 Wilms tumor Diseases 0.000 claims description 2
- 208000009956 adenocarcinoma Diseases 0.000 claims description 2
- 230000001919 adrenal effect Effects 0.000 claims description 2
- 206010002224 anaplastic astrocytoma Diseases 0.000 claims description 2
- 210000000621 bronchi Anatomy 0.000 claims description 2
- 208000002458 carcinoid tumor Diseases 0.000 claims description 2
- 210000001072 colon Anatomy 0.000 claims description 2
- 208000035250 cutaneous malignant susceptibility to 1 melanoma Diseases 0.000 claims description 2
- 210000000232 gallbladder Anatomy 0.000 claims description 2
- 201000008361 ganglioneuroma Diseases 0.000 claims description 2
- 210000003128 head Anatomy 0.000 claims description 2
- 230000000148 hypercalcaemia Effects 0.000 claims description 2
- 208000030915 hypercalcemia disease Diseases 0.000 claims description 2
- 206010020718 hyperplasia Diseases 0.000 claims description 2
- 230000000968 intestinal effect Effects 0.000 claims description 2
- 201000002529 islet cell tumor Diseases 0.000 claims description 2
- 210000003734 kidney Anatomy 0.000 claims description 2
- 206010023841 laryngeal neoplasm Diseases 0.000 claims description 2
- 208000032839 leukemia Diseases 0.000 claims description 2
- 206010024627 liposarcoma Diseases 0.000 claims description 2
- 201000007270 liver cancer Diseases 0.000 claims description 2
- 208000014018 liver neoplasm Diseases 0.000 claims description 2
- 201000005202 lung cancer Diseases 0.000 claims description 2
- 208000037841 lung tumor Diseases 0.000 claims description 2
- 230000000527 lymphocytic effect Effects 0.000 claims description 2
- 208000023356 medullary thyroid gland carcinoma Diseases 0.000 claims description 2
- 201000001441 melanoma Diseases 0.000 claims description 2
- 206010027191 meningioma Diseases 0.000 claims description 2
- 230000001394 metastastic effect Effects 0.000 claims description 2
- 206010061289 metastatic neoplasm Diseases 0.000 claims description 2
- 239000000203 mixture Substances 0.000 claims description 2
- 201000000050 myeloid neoplasm Diseases 0.000 claims description 2
- 210000003739 neck Anatomy 0.000 claims description 2
- 230000001537 neural effect Effects 0.000 claims description 2
- 210000000496 pancreas Anatomy 0.000 claims description 2
- 208000022102 pancreatic neuroendocrine neoplasm Diseases 0.000 claims description 2
- 230000000849 parathyroid Effects 0.000 claims description 2
- 208000030266 primary brain neoplasm Diseases 0.000 claims description 2
- 210000000664 rectum Anatomy 0.000 claims description 2
- 208000029922 reticulum cell sarcoma Diseases 0.000 claims description 2
- 201000009410 rhabdomyosarcoma Diseases 0.000 claims description 2
- 201000008261 skin carcinoma Diseases 0.000 claims description 2
- 206010040882 skin lesion Diseases 0.000 claims description 2
- 231100000444 skin lesion Toxicity 0.000 claims description 2
- 208000000649 small cell carcinoma Diseases 0.000 claims description 2
- 210000002784 stomach Anatomy 0.000 claims description 2
- 230000002381 testicular Effects 0.000 claims description 2
- 210000001685 thyroid gland Anatomy 0.000 claims description 2
- 230000000699 topical effect Effects 0.000 claims description 2
- 102100039498 Cytotoxic T-lymphocyte protein 4 Human genes 0.000 claims 1
- 102100024216 Programmed cell death 1 ligand 1 Human genes 0.000 claims 1
- 238000012230 antisense oligonucleotides Methods 0.000 description 91
- 239000000074 antisense oligonucleotide Substances 0.000 description 88
- 108020004999 messenger RNA Proteins 0.000 description 71
- OIRDTQYFTABQOQ-KQYNXXCUSA-N adenosine Chemical compound C1=NC=2C(N)=NC=NC=2N1[C@@H]1O[C@H](CO)[C@@H](O)[C@H]1O OIRDTQYFTABQOQ-KQYNXXCUSA-N 0.000 description 56
- 108020000948 Antisense Oligonucleotides Proteins 0.000 description 43
- 230000000694 effects Effects 0.000 description 37
- 239000002126 C01EB10 - Adenosine Substances 0.000 description 28
- 229960005305 adenosine Drugs 0.000 description 28
- 241000699666 Mus <mouse, genus> Species 0.000 description 16
- 210000001744 T-lymphocyte Anatomy 0.000 description 15
- 230000005764 inhibitory process Effects 0.000 description 15
- 238000012216 screening Methods 0.000 description 13
- 239000006228 supernatant Substances 0.000 description 13
- 230000001506 immunosuppresive effect Effects 0.000 description 12
- 102000004169 proteins and genes Human genes 0.000 description 12
- 108090000623 proteins and genes Proteins 0.000 description 12
- 239000003981 vehicle Substances 0.000 description 12
- 230000035755 proliferation Effects 0.000 description 10
- 241000699670 Mus sp. Species 0.000 description 9
- 230000001419 dependent effect Effects 0.000 description 9
- 230000002829 reductive effect Effects 0.000 description 9
- 108091030071 RNAI Proteins 0.000 description 8
- 230000009368 gene silencing by RNA Effects 0.000 description 8
- 229910019142 PO4 Inorganic materials 0.000 description 7
- 230000003833 cell viability Effects 0.000 description 7
- 238000000684 flow cytometry Methods 0.000 description 7
- 238000001727 in vivo Methods 0.000 description 7
- 210000004185 liver Anatomy 0.000 description 7
- NBIIXXVUZAFLBC-UHFFFAOYSA-K phosphate Chemical compound [O-]P([O-])([O-])=O NBIIXXVUZAFLBC-UHFFFAOYSA-K 0.000 description 7
- 239000010452 phosphate Substances 0.000 description 7
- 230000003389 potentiating effect Effects 0.000 description 7
- 101000896557 Homo sapiens Eukaryotic translation initiation factor 3 subunit B Proteins 0.000 description 6
- 101000988834 Homo sapiens Hypoxanthine-guanine phosphoribosyltransferase Proteins 0.000 description 6
- 102100029098 Hypoxanthine-guanine phosphoribosyltransferase Human genes 0.000 description 6
- 241001529936 Murinae Species 0.000 description 6
- XPPKVPWEQAFLFU-UHFFFAOYSA-J diphosphate(4-) Chemical compound [O-]P([O-])(=O)OP([O-])([O-])=O XPPKVPWEQAFLFU-UHFFFAOYSA-J 0.000 description 6
- 235000011180 diphosphates Nutrition 0.000 description 6
- 239000002609 medium Substances 0.000 description 6
- 108700039887 Essential Genes Proteins 0.000 description 5
- 102000037982 Immune checkpoint proteins Human genes 0.000 description 5
- 108091008036 Immune checkpoint proteins Proteins 0.000 description 5
- 239000003795 chemical substances by application Substances 0.000 description 5
- 238000002474 experimental method Methods 0.000 description 5
- 210000002865 immune cell Anatomy 0.000 description 5
- 210000000056 organ Anatomy 0.000 description 5
- 210000004881 tumor cell Anatomy 0.000 description 5
- 208000036832 Adenocarcinoma of ovary Diseases 0.000 description 4
- 208000022559 Inflammatory bowel disease Diseases 0.000 description 4
- 101100026203 Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) neg-1 gene Proteins 0.000 description 4
- 206010061328 Ovarian epithelial cancer Diseases 0.000 description 4
- 208000036142 Viral infection Diseases 0.000 description 4
- 238000013459 approach Methods 0.000 description 4
- 238000003556 assay Methods 0.000 description 4
- 230000015556 catabolic process Effects 0.000 description 4
- 238000006243 chemical reaction Methods 0.000 description 4
- 238000006731 degradation reaction Methods 0.000 description 4
- 239000003112 inhibitor Substances 0.000 description 4
- 238000004519 manufacturing process Methods 0.000 description 4
- 230000004048 modification Effects 0.000 description 4
- 238000012986 modification Methods 0.000 description 4
- 208000013371 ovarian adenocarcinoma Diseases 0.000 description 4
- 201000007426 ovarian cystadenocarcinoma Diseases 0.000 description 4
- 201000006588 ovary adenocarcinoma Diseases 0.000 description 4
- 238000001890 transfection Methods 0.000 description 4
- 108050000203 Adenosine receptors Proteins 0.000 description 3
- 102000009346 Adenosine receptors Human genes 0.000 description 3
- 102000008203 CTLA-4 Antigen Human genes 0.000 description 3
- 239000006144 Dulbecco’s modified Eagle's medium Substances 0.000 description 3
- 108090000790 Enzymes Proteins 0.000 description 3
- 102000004190 Enzymes Human genes 0.000 description 3
- 101100005713 Homo sapiens CD4 gene Proteins 0.000 description 3
- 206010033128 Ovarian cancer Diseases 0.000 description 3
- 230000004913 activation Effects 0.000 description 3
- 230000000692 anti-sense effect Effects 0.000 description 3
- 239000006143 cell culture medium Chemical group 0.000 description 3
- 150000001875 compounds Chemical class 0.000 description 3
- 238000010219 correlation analysis Methods 0.000 description 3
- 201000010099 disease Diseases 0.000 description 3
- 210000000987 immune system Anatomy 0.000 description 3
- 238000009169 immunotherapy Methods 0.000 description 3
- 230000001771 impaired effect Effects 0.000 description 3
- 238000011835 investigation Methods 0.000 description 3
- 210000002540 macrophage Anatomy 0.000 description 3
- 230000007246 mechanism Effects 0.000 description 3
- 210000000822 natural killer cell Anatomy 0.000 description 3
- 239000000047 product Substances 0.000 description 3
- 230000009469 supplementation Effects 0.000 description 3
- 230000001225 therapeutic effect Effects 0.000 description 3
- 239000012096 transfection reagent Substances 0.000 description 3
- YXHLJMWYDTXDHS-IRFLANFNSA-N 7-aminoactinomycin D Chemical compound C[C@H]1OC(=O)[C@H](C(C)C)N(C)C(=O)CN(C)C(=O)[C@@H]2CCCN2C(=O)[C@@H](C(C)C)NC(=O)[C@H]1NC(=O)C1=C(N)C(=O)C(C)=C2OC(C(C)=C(N)C=C3C(=O)N[C@@H]4C(=O)N[C@@H](C(N5CCC[C@H]5C(=O)N(C)CC(=O)N(C)[C@@H](C(C)C)C(=O)O[C@@H]4C)=O)C(C)C)=C3N=C21 YXHLJMWYDTXDHS-IRFLANFNSA-N 0.000 description 2
- 108700012813 7-aminoactinomycin D Proteins 0.000 description 2
- 101150051188 Adora2a gene Proteins 0.000 description 2
- 206010071155 Autoimmune arthritis Diseases 0.000 description 2
- 102000008096 B7-H1 Antigen Human genes 0.000 description 2
- 208000035143 Bacterial infection Diseases 0.000 description 2
- 102100024263 CD160 antigen Human genes 0.000 description 2
- 208000024172 Cardiovascular disease Diseases 0.000 description 2
- 101150017921 DDIT3 gene Proteins 0.000 description 2
- 206010017533 Fungal infection Diseases 0.000 description 2
- 208000031886 HIV Infections Diseases 0.000 description 2
- 208000037357 HIV infectious disease Diseases 0.000 description 2
- 101000761938 Homo sapiens CD160 antigen Proteins 0.000 description 2
- 206010021143 Hypoxia Diseases 0.000 description 2
- 206010027476 Metastases Diseases 0.000 description 2
- 241000186366 Mycobacterium bovis Species 0.000 description 2
- 208000031888 Mycoses Diseases 0.000 description 2
- 206010040047 Sepsis Diseases 0.000 description 2
- 230000006052 T cell proliferation Effects 0.000 description 2
- 230000009471 action Effects 0.000 description 2
- OLCWZBFDIYXLAA-IOSLPCCCSA-N adenosine 5'-methylenediphosphate Chemical compound C1=NC=2C(N)=NC=NC=2N1[C@@H]1O[C@H](COP(O)(=O)CP(O)(O)=O)[C@@H](O)[C@H]1O OLCWZBFDIYXLAA-IOSLPCCCSA-N 0.000 description 2
- 208000037883 airway inflammation Diseases 0.000 description 2
- 238000004458 analytical method Methods 0.000 description 2
- 230000001580 bacterial effect Effects 0.000 description 2
- 208000022362 bacterial infectious disease Diseases 0.000 description 2
- 230000015572 biosynthetic process Effects 0.000 description 2
- 238000004364 calculation method Methods 0.000 description 2
- 230000004663 cell proliferation Effects 0.000 description 2
- 239000003153 chemical reaction reagent Substances 0.000 description 2
- 206010009887 colitis Diseases 0.000 description 2
- 230000016396 cytokine production Effects 0.000 description 2
- 230000003247 decreasing effect Effects 0.000 description 2
- 238000013461 design Methods 0.000 description 2
- 239000001177 diphosphate Substances 0.000 description 2
- MWEQTWJABOLLOS-UHFFFAOYSA-L disodium;[[[5-(6-aminopurin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-oxidophosphoryl] hydrogen phosphate;trihydrate Chemical compound O.O.O.[Na+].[Na+].C1=NC=2C(N)=NC=NC=2N1C1OC(COP(O)(=O)OP([O-])(=O)OP(O)([O-])=O)C(O)C1O MWEQTWJABOLLOS-UHFFFAOYSA-L 0.000 description 2
- 238000009826 distribution Methods 0.000 description 2
- 239000003814 drug Substances 0.000 description 2
- 210000002889 endothelial cell Anatomy 0.000 description 2
- 230000002255 enzymatic effect Effects 0.000 description 2
- 230000006870 function Effects 0.000 description 2
- 230000002496 gastric effect Effects 0.000 description 2
- 102000045309 human NT5E Human genes 0.000 description 2
- 208000033519 human immunodeficiency virus infectious disease Diseases 0.000 description 2
- 230000007954 hypoxia Effects 0.000 description 2
- 238000000338 in vitro Methods 0.000 description 2
- 208000015181 infectious disease Diseases 0.000 description 2
- 208000027866 inflammatory disease Diseases 0.000 description 2
- 208000017169 kidney disease Diseases 0.000 description 2
- 201000006370 kidney failure Diseases 0.000 description 2
- 208000019423 liver disease Diseases 0.000 description 2
- 210000004698 lymphocyte Anatomy 0.000 description 2
- 238000004949 mass spectrometry Methods 0.000 description 2
- 230000009401 metastasis Effects 0.000 description 2
- 239000013642 negative control Substances 0.000 description 2
- 230000008569 process Effects 0.000 description 2
- 238000001959 radiotherapy Methods 0.000 description 2
- 230000009467 reduction Effects 0.000 description 2
- 206010039073 rheumatoid arthritis Diseases 0.000 description 2
- 238000007910 systemic administration Methods 0.000 description 2
- 230000035899 viability Effects 0.000 description 2
- 230000009385 viral infection Effects 0.000 description 2
- 230000003612 virological effect Effects 0.000 description 2
- 108091032973 (ribonucleotides)n+m Proteins 0.000 description 1
- 241000251468 Actinopterygii Species 0.000 description 1
- 101710125610 Adenosine receptor A2a Proteins 0.000 description 1
- 102100035990 Adenosine receptor A2a Human genes 0.000 description 1
- 102100036006 Adenosine receptor A3 Human genes 0.000 description 1
- 101710128949 Adenosine receptor A3 Proteins 0.000 description 1
- 101150078577 Adora2b gene Proteins 0.000 description 1
- 241001270131 Agaricus moelleri Species 0.000 description 1
- 208000024827 Alzheimer disease Diseases 0.000 description 1
- 101000840545 Bacillus thuringiensis L-isoleucine-4-hydroxylase Proteins 0.000 description 1
- 208000020925 Bipolar disease Diseases 0.000 description 1
- 206010015866 Extravasation Diseases 0.000 description 1
- 208000032612 Glial tumor Diseases 0.000 description 1
- 206010018338 Glioma Diseases 0.000 description 1
- 102100031181 Glyceraldehyde-3-phosphate dehydrogenase Human genes 0.000 description 1
- OVRNDRQMDRJTHS-KEWYIRBNSA-N N-acetyl-D-galactosamine Chemical compound CC(=O)N[C@H]1C(O)O[C@H](CO)[C@H](O)[C@@H]1O OVRNDRQMDRJTHS-KEWYIRBNSA-N 0.000 description 1
- MBLBDJOUHNCFQT-UHFFFAOYSA-N N-acetyl-D-galactosamine Natural products CC(=O)NC(C=O)C(O)C(O)C(O)CO MBLBDJOUHNCFQT-UHFFFAOYSA-N 0.000 description 1
- 238000011529 RT qPCR Methods 0.000 description 1
- 101001037255 Saccharomyces cerevisiae (strain ATCC 204508 / S288c) Indoleamine 2,3-dioxygenase Proteins 0.000 description 1
- FAPWRFPIFSIZLT-UHFFFAOYSA-M Sodium chloride Chemical compound [Na+].[Cl-] FAPWRFPIFSIZLT-UHFFFAOYSA-M 0.000 description 1
- 230000006978 adaptation Effects 0.000 description 1
- 239000000556 agonist Substances 0.000 description 1
- 238000010171 animal model Methods 0.000 description 1
- 239000005557 antagonist Substances 0.000 description 1
- 230000000259 anti-tumor effect Effects 0.000 description 1
- 230000008106 antitumoral immune reaction Effects 0.000 description 1
- 238000003149 assay kit Methods 0.000 description 1
- 210000003719 b-lymphocyte Anatomy 0.000 description 1
- 230000004888 barrier function Effects 0.000 description 1
- 230000008901 benefit Effects 0.000 description 1
- 230000033228 biological regulation Effects 0.000 description 1
- 230000000903 blocking effect Effects 0.000 description 1
- 238000000423 cell based assay Methods 0.000 description 1
- 230000003915 cell function Effects 0.000 description 1
- 238000007385 chemical modification Methods 0.000 description 1
- 238000002512 chemotherapy Methods 0.000 description 1
- 230000002860 competitive effect Effects 0.000 description 1
- 231100000433 cytotoxic Toxicity 0.000 description 1
- 210000001151 cytotoxic T lymphocyte Anatomy 0.000 description 1
- 230000001472 cytotoxic effect Effects 0.000 description 1
- 231100000050 cytotoxic potential Toxicity 0.000 description 1
- 230000007423 decrease Effects 0.000 description 1
- 230000007123 defense Effects 0.000 description 1
- 239000007857 degradation product Substances 0.000 description 1
- 210000004443 dendritic cell Anatomy 0.000 description 1
- 238000001514 detection method Methods 0.000 description 1
- 230000003828 downregulation Effects 0.000 description 1
- 229940079593 drug Drugs 0.000 description 1
- 108010047482 ectoATPase Proteins 0.000 description 1
- 230000008030 elimination Effects 0.000 description 1
- 238000003379 elimination reaction Methods 0.000 description 1
- 210000002919 epithelial cell Anatomy 0.000 description 1
- 230000007717 exclusion Effects 0.000 description 1
- 210000001723 extracellular space Anatomy 0.000 description 1
- 230000036251 extravasation Effects 0.000 description 1
- 238000009472 formulation Methods 0.000 description 1
- 238000001415 gene therapy Methods 0.000 description 1
- 108020004445 glyceraldehyde-3-phosphate dehydrogenase Proteins 0.000 description 1
- 201000005787 hematologic cancer Diseases 0.000 description 1
- 230000002489 hematologic effect Effects 0.000 description 1
- 210000003630 histaminocyte Anatomy 0.000 description 1
- 230000002519 immonomodulatory effect Effects 0.000 description 1
- 230000005934 immune activation Effects 0.000 description 1
- 230000036039 immunity Effects 0.000 description 1
- 238000003364 immunohistochemistry Methods 0.000 description 1
- 230000003993 interaction Effects 0.000 description 1
- 230000003834 intracellular effect Effects 0.000 description 1
- 238000007913 intrathecal administration Methods 0.000 description 1
- 230000002601 intratumoral effect Effects 0.000 description 1
- 230000009545 invasion Effects 0.000 description 1
- 230000002530 ischemic preconditioning effect Effects 0.000 description 1
- 238000011813 knockout mouse model Methods 0.000 description 1
- 210000000265 leukocyte Anatomy 0.000 description 1
- 230000007774 longterm Effects 0.000 description 1
- 210000005075 mammary gland Anatomy 0.000 description 1
- 238000005259 measurement Methods 0.000 description 1
- YACKEPLHDIMKIO-UHFFFAOYSA-N methylphosphonic acid Chemical compound CP(O)(O)=O YACKEPLHDIMKIO-UHFFFAOYSA-N 0.000 description 1
- 230000005012 migration Effects 0.000 description 1
- 238000013508 migration Methods 0.000 description 1
- 210000000581 natural killer T-cell Anatomy 0.000 description 1
- 210000000440 neutrophil Anatomy 0.000 description 1
- 230000009437 off-target effect Effects 0.000 description 1
- 230000035515 penetration Effects 0.000 description 1
- 125000002467 phosphate group Chemical group [H]OP(=O)(O[H])O[*] 0.000 description 1
- 238000010837 poor prognosis Methods 0.000 description 1
- 230000000770 proinflammatory effect Effects 0.000 description 1
- 230000003252 repetitive effect Effects 0.000 description 1
- 201000000980 schizophrenia Diseases 0.000 description 1
- 239000011780 sodium chloride Substances 0.000 description 1
- 239000007787 solid Substances 0.000 description 1
- 238000010186 staining Methods 0.000 description 1
- 238000010561 standard procedure Methods 0.000 description 1
- 239000007929 subcutaneous injection Substances 0.000 description 1
- 238000010254 subcutaneous injection Methods 0.000 description 1
- 230000004083 survival effect Effects 0.000 description 1
- 238000003786 synthesis reaction Methods 0.000 description 1
- 230000008685 targeting Effects 0.000 description 1
- 238000012360 testing method Methods 0.000 description 1
- 231100000331 toxic Toxicity 0.000 description 1
- 230000002588 toxic effect Effects 0.000 description 1
- 238000001262 western blot Methods 0.000 description 1
Classifications
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
- C12N15/00—Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
- C12N15/09—Recombinant DNA-technology
- C12N15/11—DNA or RNA fragments; Modified forms thereof; Non-coding nucleic acids having a biological activity
- C12N15/113—Non-coding nucleic acids modulating the expression of genes, e.g. antisense oligonucleotides; Antisense DNA or RNA; Triplex- forming oligonucleotides; Catalytic nucleic acids, e.g. ribozymes; Nucleic acids used in co-suppression or gene silencing
- C12N15/1138—Non-coding nucleic acids modulating the expression of genes, e.g. antisense oligonucleotides; Antisense DNA or RNA; Triplex- forming oligonucleotides; Catalytic nucleic acids, e.g. ribozymes; Nucleic acids used in co-suppression or gene silencing against receptors or cell surface proteins
-
- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61K—PREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
- A61K31/00—Medicinal preparations containing organic active ingredients
- A61K31/70—Carbohydrates; Sugars; Derivatives thereof
- A61K31/7088—Compounds having three or more nucleosides or nucleotides
-
- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61P—SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
- A61P25/00—Drugs for disorders of the nervous system
- A61P25/18—Antipsychotics, i.e. neuroleptics; Drugs for mania or schizophrenia
-
- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61P—SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
- A61P35/00—Antineoplastic agents
-
- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61P—SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
- A61P35/00—Antineoplastic agents
- A61P35/02—Antineoplastic agents specific for leukemia
-
- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61P—SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
- A61P37/00—Drugs for immunological or allergic disorders
- A61P37/02—Immunomodulators
-
- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61P—SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
- A61P43/00—Drugs for specific purposes, not provided for in groups A61P1/00-A61P41/00
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
- C12N15/00—Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
- C12N15/09—Recombinant DNA-technology
- C12N15/11—DNA or RNA fragments; Modified forms thereof; Non-coding nucleic acids having a biological activity
- C12N15/113—Non-coding nucleic acids modulating the expression of genes, e.g. antisense oligonucleotides; Antisense DNA or RNA; Triplex- forming oligonucleotides; Catalytic nucleic acids, e.g. ribozymes; Nucleic acids used in co-suppression or gene silencing
- C12N15/1137—Non-coding nucleic acids modulating the expression of genes, e.g. antisense oligonucleotides; Antisense DNA or RNA; Triplex- forming oligonucleotides; Catalytic nucleic acids, e.g. ribozymes; Nucleic acids used in co-suppression or gene silencing against enzymes
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
- C12N2310/00—Structure or type of the nucleic acid
- C12N2310/10—Type of nucleic acid
- C12N2310/11—Antisense
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
- C12N2310/00—Structure or type of the nucleic acid
- C12N2310/30—Chemical structure
- C12N2310/31—Chemical structure of the backbone
- C12N2310/315—Phosphorothioates
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
- C12N2310/00—Structure or type of the nucleic acid
- C12N2310/30—Chemical structure
- C12N2310/32—Chemical structure of the sugar
- C12N2310/323—Chemical structure of the sugar modified ring structure
- C12N2310/3231—Chemical structure of the sugar modified ring structure having an additional ring, e.g. LNA, ENA
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
- C12N2310/00—Structure or type of the nucleic acid
- C12N2310/30—Chemical structure
- C12N2310/34—Spatial arrangement of the modifications
- C12N2310/341—Gapmers, i.e. of the type ===---===
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
- C12N2310/00—Structure or type of the nucleic acid
- C12N2310/30—Chemical structure
- C12N2310/34—Spatial arrangement of the modifications
- C12N2310/346—Spatial arrangement of the modifications having a combination of backbone and sugar modifications
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
- C12N2320/00—Applications; Uses
- C12N2320/30—Special therapeutic applications
- C12N2320/31—Combination therapy
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Y—ENZYMES
- C12Y301/00—Hydrolases acting on ester bonds (3.1)
- C12Y301/03—Phosphoric monoester hydrolases (3.1.3)
- C12Y301/03005—5'-Nucleotidase (3.1.3.5)
Landscapes
- Health & Medical Sciences (AREA)
- Life Sciences & Earth Sciences (AREA)
- Engineering & Computer Science (AREA)
- Chemical & Material Sciences (AREA)
- Genetics & Genomics (AREA)
- Organic Chemistry (AREA)
- Biomedical Technology (AREA)
- Bioinformatics & Cheminformatics (AREA)
- General Health & Medical Sciences (AREA)
- Molecular Biology (AREA)
- Medicinal Chemistry (AREA)
- Veterinary Medicine (AREA)
- Pharmacology & Pharmacy (AREA)
- Animal Behavior & Ethology (AREA)
- Public Health (AREA)
- General Engineering & Computer Science (AREA)
- Wood Science & Technology (AREA)
- Zoology (AREA)
- Biotechnology (AREA)
- Chemical Kinetics & Catalysis (AREA)
- Nuclear Medicine, Radiotherapy & Molecular Imaging (AREA)
- General Chemical & Material Sciences (AREA)
- Biochemistry (AREA)
- Microbiology (AREA)
- Plant Pathology (AREA)
- Biophysics (AREA)
- Physics & Mathematics (AREA)
- Immunology (AREA)
- Epidemiology (AREA)
- Virology (AREA)
- Neurosurgery (AREA)
- Psychiatry (AREA)
- Oncology (AREA)
- Neurology (AREA)
- Hematology (AREA)
- Pharmaceuticals Containing Other Organic And Inorganic Compounds (AREA)
- Medicines That Contain Protein Lipid Enzymes And Other Medicines (AREA)
- Medicines Containing Antibodies Or Antigens For Use As Internal Diagnostic Agents (AREA)
- Acyclic And Carbocyclic Compounds In Medicinal Compositions (AREA)
Abstract
The present invention refers to immunosuppression-reverting oligonucleotides comprising 12 to 18 nucleotides, wherein at least one of the nucleotides is modified, and the oligonucleotide hybridizes with a nucleic acid sequence of an ectoenzyme (CD73) of SEQ ID NO.1 (human) and/or of a sequence of SEQ ID NO.2 (mouse), wherein the oligonucleotide inhibits at least 50 % of the CD73 expression. The invention is further directed to a pharmaceutical composition comprising such oligonucleotide.
Description
PCT/EP2017/075682
Immunosuppression-reverting oligonucleotides inhibiting the expression of CD73
The present disclosure refers to an immunosuppression-reverting oligonucleotide hybridizing with a nucleic acid sequence of an ectoenzyme (NT5E or CD73) and to a pharmaceutical composition comprising such immunosuppression-reverting oligonucleotide and a pharmaceutically acceptable carrier, excipient and/or dilutant.
Technical background
In recent years the treatment of several different diseases such as malignant tumors was very successful by application of immune therapy, in particular by inhibitors of so called “immune checkpoints”. These checkpoints are molecules in the immune system that either turn up (co-stimulatory molecules) or down a signal. The concept of the therapeutic approach is based on the activation of endogenous anti-tumor immune reactions. Many cancers for example protect themselves from the immune system by inhibiting T cell and NK cell activity, respectively. Immune checkpoint modulators, i.e., stimulators or inhibitors are for example directed to one or more of CTLA-4, PD-1, PDLl, LAG-3, VISTA, A2AR, BTLA, IDO, CD39, CD73, STAT3, TDO2, TIM-3, MICA, NKG2A, KIR, TIGIT, TGF-beta, 0x40, GITR, CD27, CD 160, 2B4 and 4-IBB.
CD73 needs to be considered as one novel and promising candidate to improve immunity towards different types of cancers. CD73 is an ectoenzyme (NTPdase) and catalyzes the conversion of AMP to immunosuppressive adenosine. CD73 acts in concert but downstream of CD39, known to convert ATP to ADP and ADP to AMP. Adenosine exerts its effects via adenosine receptor Al, adenosine receptor A2A, adenosine receptor A2Band adenosine receptor A3. The range of immune cells expressing adenosine receptors and therefore potentially affected by the immunomodulatory effects of adenosine include T lymphocytes, natural killer (NK) cells, NKT cells, macrophages, DCs, neutrophils, mast cells and B cells.
CD73 is found in most tissues and many cell types including subsets of lymphocytes, macrophages, dendritic cells, endothelial cells and epithelial cells. Hypoxia induces CD73 mRNA, protein expression and increases CD73 activity in mouse microvascular
WO 2018/065627
PCT/EP2017/075682 endothelial cells. Particularly, CD73 is highly expressed in many different human (solid and hematologic) tumors, and its elevated expression and activity are associated with tumor invasiveness and metastasis and with shorter patient survival. The RNA expression and enzyme activity of CD73 are variable in different breast cancer cell lines.
Dying cancer cells release ATP to the extracellular space in the tumor microenvironment. Living tumor cells express often high levels of CD39 and CD73 and convert ATP to the immunosuppressive adenosine. By this, tumor cells are competent to perform uncontrolled proliferation and expansion. By binding to A2A or A2B receptors on lymphocytes, adenosine mediates an immunosuppressive signal towards these cells. For example, T cells are inhibited in their proliferation, cytotoxic cytokine production and activation. NK cells show reduced cytotoxic potential. Adenosine induces alternative activation in macrophages (immune suppressive M2 phenotype) resulting in reduced proinflammatory cytokine production but increased generation of the immunosuppressive cytokine IL-10. The important role of CD73 as relevant therapeutic target in different tumors is underlined by the fact that tumor models using CD73 or A2A receptor knockout mice reveal improved disease outcome.
Anti-human CD73 monoclonal antibodies such as anti-CD73-antibodies of Innate Pharma (e.g., Innate Pharma Poster #iph_poster_aarc2016_cd73) are currently under pre-clinical investigation in immune-oncology cell-based assays. However, because of steric hindrance monoclonal antibodies against CD73 might fail to localize to the tumor microenvironment. Furthermore, non-hydrolysable small molecular inhibitors of CD73 such as AMPCP (adenosine 5z-(a,B-methylene)diphosphate; e.g., Structure20, 2161-2173, December 5, 2012) an ADP analog competitively inhibiting the CD73 activity, have been tested in vitro and in vivo in animal models but relatively high concentrations and repetitive dosing are needed to successfully block CD73 enzymatic activity.
Immune therapies have resulted in long-term remission, but only of small patient groups so far. The reason may be that numerous immune checkpoints and optionally further immunosuppressive mechanisms are involved in the interaction between for example the immune system and the tumor cells. The combination of immune checkpoints and potential other mechanisms may vary depending on the tumor and individual conditions of a subject to escape the body's defenses.
WO 2018/065627
PCT/EP2017/075682
For the inhibition of several immunosuppressive mechanisms common approaches using an antibody and/or a small molecule are not or hardly suitable as the molecular target is located intracellularly or does not have enzymatic activity. Accordingly, an agent which is safe and effective in inhibiting the function of an “immune checkpoint” such as CD 73 would be an important addition for the treatment of patients suffering from diseases or conditions affected for example by the activity of this enzyme.
Oligonucleotides of the present invention are very successful in the inhibition of the expression and activity of CD73, respectively. The mode of action of an oligonucleotide differs from the mode of action of an antibody or small molecule, and oligonucleotides are highly advantageous regarding for example (i) the penetration of tumor tissue in solid tumors, (ii) the blocking of multiple functions and activities, respectively, of a target, (iii) the combination of oligonucleotides with each other or an antibody or a small molecule, and (iv) the inhibition of intracellular effects which are not accessible for an antibody or inhibitable via a small molecule.
Therefore, targeting CD73 expression on cancer and immune cells on mRNA-level by antisense-oligonucleotides is a promising state-of-the-art approach to develop and improve for example immunotherapies against different cancers and immune diseases, respectively.
Summary
The present invention refers to an oligonucleotide such as an immunosuppressionreverting oligonucleotide comprising about 10 to 20 nucleotides, wherein at least one of the nucleotides is modified. The oligonucleotide hybridizes for example with a nucleic acid sequence of an ectoenzyme CD73 of SEQ ID NO. 1 (human) and/or a sequence of SEQ ID NO.2 (mouse). The modified nucleotide is for example selected from the group consisting of a bridged nucleic acid (e.g., LNA, cET, ENA, 2'Fluoro modified nucleotide or 2O-Methyl modified nucleotide). In some embodiments, the oligonucleotide inhibits at least 50 % of the CD73 expression and in some embodiments the oligonucleotide inhibits the expression of CD73 at a nanomolar concentration.
WO 2018/065627
PCT/EP2017/075682
Antisense oligonucleotides have significant advantages in comparison to RNAi. Antisense oligonucleotides can be transfected without transfecting reagent in vitro and thus, the transfection is closer to in vivo conditions than transfections using transfecting reagents which are obligatory for the transfection of RNAi. In vivo systemic administration of antisense oligonucleotides is possible in different tissues whereas the administration of RNAi in vivo is dependent on delivery systems such as GalNAc for example in liver. Moreover, antisense oligonucleotides are shorter than RNAi and therefore, are less complex in synthesis and in the uptake into cells. RNAi regularly show off-target effects of passenger strands which likewise can initiate RNAi passenger strand RISC loading is a significant concern for RNAi drugs because the passenger strand could direct RNAi activity towards unintended targets, resulting in toxic side effects (see Chackalamannil, Rotella, Ward, Comprehensive Modicinal Chemistry III Elsevier, 03.06.2017). Antisense oligonucleotides do not comprise a passenger strand.
The present invention is further directed to a pharmaceutical composition comprising an immunosuppression-reverting oligonucleotide of the present invention and optionally a pharmaceutically acceptable carrier, excipient and/or dilutant. In some embodiments, this pharmaceutical composition additionally comprises a chemotherapeutic such as platinum or gemcitabine, another oligonucleotide, an antibody and/or a small molecule which is for example effective in tumor treatment.
In some embodiments, the oligonucleotide of the present invention is in combination with another oligonucleotide, an antibody and/or a small molecule, either each of these compounds is separate or combined in a pharmaceutical composition, wherein the oligonucleotide, the antibody and/or the small molecule inhibits or stimulates an immune suppressive factor such as IDO1, IDO2, CTLA-4, PD-1, PD-L1, LAG-3, VISTA, A2AR, CD39, CD73, STAT3, TDO2, TIM-3, TIGIT, TGF-beta, BTLA, MICA, NKG2A, KIR, CD160, Chop, and/or Xbpl. In addition or alternatively, the oligonucleotide, the antibody and/or the small molecule inhibits or stimulates or an immune stimulatory factor such as 4-IBB, 0x40, KIR, GITR, CD27 and/or 2B4.
Furthermore, the present invention relates to the use of the oligonucleotide or the pharmaceutical composition of the present invention in a method of preventing and/or treating a disorder, where a CD73 imbalance is involved. In some embodiments, the disorder is for example an autoimmune disorder, for example autoimmune arthritis or
WO 2018/065627
PCT/EP2017/075682 gastrointestinal autoimmune diseases such as inflammatory bowel disease (IBD) or colitis, an immune disorder, for example an immune exhaustion due to chronic viral infections such as HIV infection, a cardiovascular disorder, an inflammatory disorder, for example a chronic airway inflammation, a bacterial, viral and/or fungal infection, for example sepsis or a Mycobacterium bovis infection, a liver disorder, a chronic kidney disorder, a psychiatric disorder and/or cancer. CD73 has many physiological roles, such as regulation of barrier function, adaptation to hypoxia, ischemic preconditioning, antiinflammation, leukocyte extravasation. Expression and activity of CD73 on cancer cells is associated with poor prognosis and may promote metastasis. CD73 facilitates the adhesion, migration, invasion of human breast cancer cells and proliferation of glioma cells and these processes are dependent upon the enzyme's production of adenosine. In some embodiments, the oligonucleotide or the pharmaceutical composition of the present invention is for example administered locally or systemically.
All documents cited or referenced herein (“herein cited documents”), and all documents cited or referenced in herein cited documents, together with any manufacturer's instructions, descriptions, product specifications, and product sheets for any products mentioned herein or in any document incorporated by reference herein, are hereby incorporated herein by reference, and may be employed in the practice of the invention. More specifically, all referenced documents are incorporated by reference to the same extent as if each individual document was specifically and individually indicated to be incorporated by reference.
Description of figures
Fig. 1 depicts the distribution of human (h)CD73 antisense oligonucleotide binding sites on the hCD73 mRNA of SEQ ID No. 1 (NM_002526.3) as well as their modification(s) and length. hCD73 antisense oligonucleotides were aligned to the hCD73 mRNA sequence of SEQ ID No. 1. The different grayscales indicate the different LNA modifications and symbols indicate the different length of the antisense oligonucleotides.
Fig. 2A-2E depict hCD73 mRNA knockdown efficacy of hmCD73 antisense oligonucleotides in human cancer cell lines A-172 (human glioblastoma) in a first and second screening round (Fig. 2A and 2B (parts 1 and 2)), and EFO-21 (human ovary cystadenocarcinoma;) in one screening round (Fig. 2C (parts 1 and 2)), in one murine
WO 2018/065627
PCT/EP2017/075682 cell line 4T1 (breast cancer) in one screening round (Fig. 2D (parts 1 and 2)) and human SKOV-3 (human ovarian adenocarcinoma cancer) cells in one screening round (Fig. 2E). A-172, EFO-21, 4T1 and SKOV-3 cells were treated for 3 days with 10 μΜ of the respective antisense oligonucleotide. As control, cells were treated with negl, an antisense oligonucleotide having the sequence CGTTTAGGCTATGTACTT (described in WO2014154843 Al). Residual human or mouse CD73 mRNA expression relative to untreated cells is depicted. Expression values were normalized to expression values of the housekeeping gene GAPDH or HPRT1. Depicted is the mean of triplicate wells +/SD.
Fig. 3A and 3B show a correlation analysis of hmCD73 antisense oligonucleotide efficacy in human EFO-21 cells compared to human A-172 cells (Fig. 3A) and human A172 cells compared to mouse 4T1 cells (Fig. 3B).
Fig. 4A and 4B shows concentration dependent hmCD73 mRNA knockdown by selected hmCD73 antisense oligonucleotides in SKOV-3 cells and EFO-21 (human ovarian cancer), which were A05008HM (SEQ ID No. 4), A05009HM (SEQ ID No. 6), A05018HM (SEQ ID No. 3), A05026HM (SEQ ID No. 8), and A05028HM (SEQ ID No. 5) (Fig. 4A) and A05018HM (SEQ ID No.3), A05027HM (SEQ ID No.30), A05028HM (SEQ ID No.5), and A05037HM (SEQ ID No.39) in EFO-21 cells (Fig. 4B). SKOV-3 and EFO-21 cells were treated for 3 days with the indicated concentration of the respective antisense oligonucleotide. Residual hCD73 expression is depicted compared to untreated control cells (set as 100). hCD73 mRNA expression values were normalized to expression of the housekeeping gene HPRT1. Depicted is the mean of triplicate wells +/- SD. Concentration-dependent target knockdown was used for calculation of IC50 values shown in Table 7 for SKOV-3 cells and in Table 8 for EFO-21 cells.
Figure 5A to 5C depict hmCD73 mRNA knockdown efficacy of hmCD73 antisense oligonucleotides in human and mouse cancer cell lines. EFO-21 (human ovary cystadenocarcinoma (Fig. 5A)), SKOV-3 (human ovarian adenocarcinoma (Fig. 5B)), and 4T1 (mouse breast cancer (Fig. 5C)) cells were treated for 3 days with 10 μΜ of the respective antisense oligonucleotide. Residual hmCD73 mRNA expression relative to untreated cells (set as 1) is depicted. Expression values were normalized to expression of the housekeeping gene HPRT1. Depicted is the mean of triplicate wells +/- SD.
WO 2018/065627
PCT/EP2017/075682
Fig. 6 shows EFO-21 cells were treated for 3 days with the indicated concentrations of the respective antisense oligonucleotide. hCD73 mRNA expression values were normalized to expression of the housekeeping gene HPRT1. Residual hCD73 mRNA expression relative to untreated cells (set as 100) is depicted. Depicted is the mean of triplicate wells +/- SD.
Fig. 7A and 7B depict a concentration-dependent hCD73 mRNA and protein knockdown by A05008HM (SEQ ID No. 4), A05018HM (SEQ ID No. 3) and A05028HM (SEQ ID No. 5). Analysis of protein expression and cell viability by flow cytometry of CD73 (Fig. 7A), and 7-AAD staining of SKOV-3 cells (Fig. 7B) was performed after treatment with the indicated antisense oligonucleotides for 6 days. As a control, cells were similarly treated with negl. Median fluorescence intensity of CD73 protein expression (Fig. 7A) and total dead cells (7-AAD positive cells) (Fig. 7B) relative to the number of control cells that were not treated with any antisense oligonucleotide (=1) is depicted.
Fig. 8 shows knockdown of CD73 protein expression on SKOV3 and EFO-21 cells after antisense oligonucleotide treatment. CD73 protein expression on both tested cell lines was analyzed after treatment with A05018HM (SEQ ID No. 3) for six days. As a control, cells were similarly treated with negl. Median fluorescence intensity of CD73 protein expression relative to the expression of control cells that were not treated with any antisense oligonucleotide (=1) is depicted.
Fig. 9A-9D depict effects of hCD73 knockdown on extracellular pyrophosphate levels and cell viability by SKOV-3 and EFO-21 cells. Generation of pyrophosphate as an indirect measure for the production of adenosine was analyzed in cell supernatants from EFO-21 cells (Fig. 9A) and SKOV-3 cells (Fig. 9C), that were treated for 6 days with A05018HM (SEQ ID No. 3). Before measurement, exogenous AMP was added to the cells at 500μΜ at the indicated time points. Effect of the treatment with A05018HM (SEQ ID No. 3) on cell viability of EFO-21 cells (Fig. 9B) and SKOV-3 cells (Fig. 9D) was tested using the cell titer blue assay.
Fig. 10A to 10C shows EFO-21 cells treated with the CD73-specific antisense oligonucleotide A05018HM (black column) or the control oligonucleotide S6 (white column) at 5 μΜ for a total treatment time of 6 days. hCD73 protein expression was analyzed by flow cytometry. Fig. 10A depicts residual hCD73 expression relative to
WO 2018/065627
PCT/EP2017/075682 untreated cells (dotted column; set as 1). To analyze the capacity to degrade extracellular AMP, 300 μΜ of AMP was added to cells or cell-free PBS (striped column) 6.5 h before termination. Fig. 10B shows relative AMP levels relative to cell-free AMP-supplemented PBS (set as 1) and Fig. 10C depicts absolute adenosine concentrations in cell supernatants (cell-conditioned PBS). Depicted is the mean of 3-wells +/- SD or single values for conditions with cell free PBS.
Fig. 11A to 11C depict human CD4+ T cells labelled with cell proliferation dye, activated with anti-CD3 and treated with 5 μΜ of the CD73 specific antisense oligonucleotide A05018HM (black column) or the control oligonucleotide S6 (white column) for a total treatment time of 5 days. In the vehicle control (striped column), cells were activated with anti-CD3 only. Subsequently, 300 μΜ of AMP or vehicle were added to cells on day 3 and day 4 after start of oligonucleotide treatment. Fig. 11A shows CD 73 protein expression, Fig. 11B depicts proliferation, and Fig. 11C shows absolute cell numbers of CD4+ T cells which were analyzed using Flow Cytometry on day 5 after start of oligonucleotide treatment. Depicted is the mean of triplicate wells +/- SD.
Fig. 12 depicts in vivo effect of hmCD73 antisense oligonucleotide (A05027HM) treatment on mCD73 mRNA expression in mouse liver. The results depicted in Fig. 12 show mCD73 mRNA levels in livers of A05027HM- or vehicle- treated mice (white column).
Fig. 13 shows hCD73 mRNA of SEQ ID No. 1 (NM_002526.3).
Detailed description
The present invention provides for the first time human and murine oligonucleotides which hybridize with mRNA sequences of the ectonucleotidase CD73 and inhibit the expression and activity, respectively, of CD73 for example on a tumor cell or a tumorassociated immune cell. In consequence, the level of ATP increases and the level of its degradation products such as ADP, AMP and immunosuppressive Adenosine decreases. All these effects result in an increase of antitumoral immune cells, immune activation (e.g., via cytotoxic T cells or NK cells) and recognition and elimination of tumor cells, respectively. Thus, the oligonucleotides of the present invention represent an interesting
WO 2018/065627
PCT/EP2017/075682 and highly efficient tool for use in a method of preventing and/or treating disorders, where the CD73 expression and activity, respectively, is increased.
In the following, the elements of the present invention will be described in more detail. These elements are listed with specific embodiments, however, it should be understood that they may be combined in any manner and in any number to create additional embodiments. The variously described examples and embodiments should not be construed to limit the present invention to only the explicitly described embodiments. This description should be understood to support and encompass embodiments which combine the explicitly described embodiments with any number of the disclosed elements. Furthermore, any permutations and combinations of all described elements in this application should be considered disclosed by the description of the present application unless the context indicates otherwise.
Throughout this specification and the claims, unless the context requires otherwise, the word comprise, and variations such as comprises and comprising, will be understood to imply the inclusion of a stated member, integer or step or group of members, integers or steps but not the exclusion of any other member, integer or step or group of members, integers or steps. The terms a and an and the and similar reference used in the context of describing the invention (especially in the context of the claims) are to be construed to cover both the singular and the plural, unless otherwise indicated herein or clearly contradicted by the context. Recitation of ranges of values herein is merely intended to serve as a shorthand method of referring individually to each separate value falling within the range. Unless otherwise indicated herein, each individual value is incorporated into the specification as if it were individually recited herein. All methods described herein can be performed in any suitable order unless otherwise indicated herein or otherwise clearly contradicted by context. The use of any and all examples, or exemplary language (e.g., such as, “for example”), provided herein is intended merely to better illustrate the invention and does not pose a limitation on the scope of the invention otherwise claimed. No language in the specification should be construed as indicating any non-claimed element essential to the practice of the invention.
Oligonucleotides of the present invention are for example antisense oligonucleotides consisting of or comprising 10 to 25 nucleotides, 10 to 15 nucleotides, 15 to 20
WO 2018/065627
PCT/EP2017/075682 nucleotides, 12 to 18 nucleotides, or 14 to 17 nucleotides. The oligonucleotides for example consist of or comprise 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20 or 25 nucleotides. The oligonucleotides of the present invention comprise at least one nucleotide which is modified. The modified nucleotide is for example a bridged nucleotide such as a locked nucleic acid (LNA, e.g., 2',4'-LNA), cET, ENA, a 2'Fluoro modified nucleotide, a 2'0Methyl modified nucleotide or combinations thereof. In some embodiments, the oligonucleotide of the present invention comprises nucleotides having the same or different modifications. In some embodiments the oligonucleotide of the present invention comprises a modified phosphate backbone, wherein the phosphate is for example a phosphorothioate or methylphosphonate or both.
The oligonucleotide of the present invention comprises the one or more modified nucleotide at the 3'- and/or 5'- end of the oligonucleotide and/or at any position within the oligonucleotide, wherein modified nucleotides follow in a row of 1, 2, 3, 4, 5, or 6 modified nucleotides, or a modified nucleotide is combined with one or more unmodified nucleotides. The following Table 1 presents embodiments of oligonucleotides comprising modified nucleotides for example LNA which are indicated by (+) and phosphorothioate (PTO) indicated by (*). The oligonucleotides consisting of or comprising the sequences of Table 1 may comprise any other modified nucleotide and any other combination of modified and unmodified nucleotides. Oligonucleotides of Table 1 hybridize with mRNA of human and murine CD 73:
WO 2018/065627
PCT/EP2017/075682
| SEQ ID No. | Name | mRNA (Antisense) Sequence 5-3' | Antisense Sequence 5'-3' with PTO (*) and LNA (+) |
| 3 | A05018HM | GATTTCCCAGTGCCAT | +G*+A*+T*T*T*C*C*C*A*G*T*G*C*+C*+A*+T |
| 4 | A05008HM | GCTGTGCACGTCGTT | +G*+C*+T*G*T*G*C*A*C*G*T*C*+G*+T*+T |
| 5 | A05028HM | TGATTTCCCAGTGCCAT | +T*+G*+A*T*T*T*C*C*C*A*G*T*G*C*+C*+A*+T |
| 6 | A05009HM | GGCTGTGCACGTCGT | +G*+G*+C*T*G*T*G*C*A*C*G*T*C*+G*+T |
| 7 | A05019HM | CTCAGAATTGGAAATT | +C*+T*+C*A*G*A*A*T*T*G*G*A*A*+A*+T*+T |
| 8 | A05026HM | ACTCGACACTTGGTGC | +A*+C*+T*C*G*A*C*A*C*T*T*G*G*+T*+G*+C |
| 9 | A05001HM | CTGTGCACGTCGTT | +C*+T*+G*T*G*C*A*C*G*T*C*+G*+T*+T |
| 10 | A05002HM | AGCACGTTGGGTTC | +A*+G*C*A*C*G*T*T*G*G*G*T*+T*+C |
| 11 | A05003HM | ACGGTGAACCAGAT | +A*+C*+G*G*T*G*A*A*C*C*A*+G*+A*+T |
| 12 | A05004HM | GCATAGGCCTGGAC | +G*+C*+A*T*A*G*G*C*C*T*G*+G*+A*+C |
| 13 | A05005HM | CTCGACACTTGGTG | +C*+T*+C*G*A*C*A*C*T*T*G*G*+T*+G |
| 14 | A05006HM | ACTCGACACTTGGT | +A*+C*+T*C*G*A*C*A*C*T*T*+G*+G*+T |
| 15 | A05007HM | GGCACTCGACACTT | +G*+G*+C*A*C*T*C*G*A*C*A*+C*+T*+T |
| 16 | A05010HM | GTCCTCCCACCACGA | +G*+T*+C*C*T*C*C*C*A*C*C*A*+C*+G*+A |
| 17 | A05011HM | GTCCTCCCACCACGA | +G*+T*C*C*T*C*C*C*A*C*C*A*C*G*+A |
| 18 | A05012HM | TGTCCTCCCACCACG | +T*+G*T*C*C*T*C*C*C*A*C*C*+A*+C*+G |
| 19 | A05013HM | GAGTGTCCTCCCACC | +G*+A*G*T*G*T*C*C*T*C*C*C*A*C*+C |
| 20 | A05014HM | TCGACACTTGGTGCA | +T*+C*+G*A*C*A*C*T*T*G*G*T*+G*+C*+A |
| 21 | A05015HM | CTCGACACTTGGTGC | +C*+T*+C*G*A*C*A*C*T*T*G*G*+T*+G*+C |
| 22 | A05016HM | ACTCGACACTTGGTG | +A*+C*+T*C*G*A*C*A*C*T*T*+G*G*T*+G |
| 23 | A05017HM | CACTCGACACTTGGT | +C*+A*+C*T*C*G*A*C*A*C*T*T*+G*+G*+T |
| 24 | A05020HM | TGTCCTCCCACCACGA | +T*+G*+T*C*C*T*C*C*C*A*C*C*A*+C*+G*+A |
| 25 | A05021HM | GTGTCCTCCCACCACG | +G*+T*G*T*C*C*T*C*C*C*A*C*C*+A*+C*+G |
| 26 | A05022HM | GAGTGTCCTCCCACCA | +G*+A*G*T*G*T*C*C*T*C*C*C*A*C*+C*+A |
| 27 | A05023HM | GTGTTGGAGTGTCCTC | +G*T*+G*T*T*G*G*A*G*T*G*T*C*C*+T*+C |
| 28 | A05024HM | CTCGACACTTGGTGCA | +C*+T*+C*G*A*C*A*C*T*T*G*G*T*+G*+C*+A |
| 29 | A05025HM | CTCGACACTTGGTGCA | +C*+T*+C*G*A*C*A*C*T*T*G*G*T*G*+C*+A |
| 30 | A05027HM | GCACTCGACACTTGGT | +G*+C*+A*C*T*C*G*A*C*A*C*T*T*+G*+G*+T |
| 31 | A05029HM | GTGTCCTCCCACCACGA | +G*+T*+G*T*C*C*T*C*C*C*A*C*C*A*+C*+G*+A |
| 32 | A05030HM | AGTGTCCTCCCACCACG | +A*+G*+T*G*T*C*C*T*C*C*C*A*C*C*+A*+C*+G |
| 33 | A05031HM | GAGTGTCCTCCCACCAC | +G*+A*G*T*G*T*C*C*T*C*C*C*A*C*C*A*+C |
| 34 | A05032HM | GAGTGTCCTCCCACCAC | +g^*g^*gx*c*c*t*c*c*c*a*c*+c*a*+c |
| 35 | A05033HM | GAGTGTCCTCCCACCAC | +G*A*G*T*G*T*C*C*T*C*C*C*A*C*C*+A*+C |
| 36 | A05034HM | ACTCGACACTTGGTGCA | +A*+C*+T*C*G*A*C*A*C*T*T*G*G*T*+G*+C*+A |
| 37 | A05035HM | ACTCGACACTTGGTGCA | +A*+C*+T*C*G*A*C*A*C*T*T*G*G*T*G*+C*+A |
| 38 | A05036HM | GGCACTCGACACTTGGT | +G*+G*+C*A*C*T*C*G*A*C*A*C*T*T*+G*+G*+T |
| 39 | A05037HM | GGCACTCGACACTTGGT | +G*+G*CA*C*T*C*G*A*C*A*C*T*T*+G*+G*+T |
| 42 | A05038HM | GCTGTGCACGTCGTT | +G*+C*T*G*T*G*C*A*C*G*T*C*+G*+T*+T |
| 43 | A05039HM | CGGCTGTGCACGTCGTT | +C*G*+G*C*T*G*T*G*C*A*C*G*T*C*G*+T*+T |
| 44 | A05040HM | GGCTGTGCACGTCGT | +G*+G*+C*T*G*T*G*C*A*C*G*T*C*+G*+T |
| 45 | A05041HM | GATTTCCCAGTGCCAT | +G*+A*+T*T*T*C*C*C*A*G*T*G*C*C*+A*+T |
WO 2018/065627
PCT/EP2017/075682
| 45 | A05042HM | GATTTCCCAGTGCCAT | +G*+A*T*T*T*C*C*C*A*G*T*G*C*+C*+A*+T |
| 46 | A05043HM | TGATTTCCCAGTGCCAT | +T*+G*+A*T*T*T*C*C*C*A*G*T*G*+C*C*+A*+T |
| 46 | A05044HM | TGATTTCCCAGTGCCAT | +T*+G*+A*T*T*T*C*C*C*A*G*T*G*C*C*+A*+T |
| 47 | A05045HM | CATGATTTCCCAGTGCC | +C*+A*+T*G*A*T*T*T*C*C*C*A*G*T*G*+C*+C |
| 40 | Neg1 | +C*+G*+T*T*T*A*G*G*C*T*A*T*G*T*A*+C*+T*+T | |
| 41 | S6 | +T*+C*+T*A*T*C*G*T*G*A*T*G*T*T*+T*+C*+T |
Table 1: List of antisense oligonucleotides hybridizing with human and murine CD73 for example of SEQ ID No. 1 and SEQ ID No. 2, respectively. Negl is an antisense oligonucleotide representing a negative control which is not hybridizing with CD73 of SEQ ID No. 1 and SEQ ID No. 2.
The oligonucleotides of the present invention hybridize for example with mRNA of human or murine CD73 of SEQ ID No. 1 and/or SEQ ID No. 2. Such oligonucleotides are called CD73 antisense oligonucleotides.
In some embodiments, the oligonucleotide of the present invention inhibits at least about 50%, 55%, 60%, 65%, 70%, 75%, 80%, 85%, 90%, 92%, 94%, 95%, 96%, 97%, 98%, 99% or 100% of CD73 such as the, e.g., human or murine, CD73 expression. Thus, the oligonucleotides of the present invention are immunosuppression-reverting oligonucleotides which revert immunosuppression for example in a cell, tissue, organ, or a subject. The oligonucleotide of the present invention inhibits the expression of CD73 at a nanomolar or micromolar concentration for example in a concentration of 0.1, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 15, 20, 25, 30, 35, 40, 45, 50, 55, 60, 65, 70, 75, 80, 85, 90, 95, 100, 150, 200, 250, 300, 350, 400, 450, 500, 550, 600, 650, 700, 750, 800, 850, 900 or 950 nM, or 1, 10 or 100 μΜ.
In some embodiments, the oligonucleotide of the present invention is used in a concentration of 1, 3, 5, 9, 10, 15, 27, 30, 40, 50, 75, 82, 100, 250, 300, 500, or 740 nM, or 1, 2.2, 3, 5, 6.6 or 10 μΜ.
In some embodiments the present invention refers to a pharmaceutical composition comprising an oligonucleotide of the present invention and a pharmaceutically acceptable carrier, excipient and/or dilutant. In some embodiments, the pharmaceutical composition further comprises a chemotherapeutic, another oligonucleotide, an antibody and/or a small molecule.
WO 2018/065627
PCT/EP2017/075682
In some embodiments, the oligonucleotide or the pharmaceutical composition of the present invention is for use in a method of preventing and/or treating a disorder. In some embodiments, the use of the oligonucleotide or the pharmaceutical composition of the present invention in a method of preventing and/or treating a disorder is combined with radiotherapy. The radiotherapy may be further combined with a chemotherapy (e.g., platinum, gemcitabine). The disorder is for example characterized by an CD73 imbalance,
i.e., the CD73 level is increased in comparison to the level in a normal, healthy cell, tissue, organ or subject. The CD73 level is for example increased by an increased CD73 expression and activity, respectively. The CD73 level can be measured by any standard method such as immunohistochemistry, western blot, quantitative real time PCR or QuantiGene assay known to a person skilled in the art.
An oligonucleotide or a pharmaceutical composition of the present invention is administered locally or systemically for example orally, sublingually, nasally, subcutaneously, intravenously, intraperitoneally, intramuscularly, intratumoral, intrathecal, transdermal and/or rectal. Alternatively or in combination ex vivo treated immune cells are administered. The oligonucleotide is administered alone or in combination with another immunosuppression-reverting oligonucleotide of the present invention and optionally in combination with another compound such as another oligonucleotide, an antibody, a small molecule and/or a chemotherapeutic (e.g., platinum, gemcitabine). In some embodiments, the other oligonucleotide (i.e., not being part of the present invention), the antibody, and/or the small molecule are effective in preventing and/or treating an autoimmune disorder, for example autoimmune arthritis or gastrointestinal autoimmune diseases such as inflammatory bowel disease (IBD) or colitis, an immune disorder, for example an immune exhaustion due to chronic viral infections such as HIV infection, a cardiovascular disorder, an inflammatory disorder for example a chronic airway inflammation, a bacterial, viral and/or fungal infection for example sepsis or a Mycobacterium bovis infection, a liver disorder, a chronic kidney disorder, a psychiatric disorder (e.g., schizophrenia, bipolar disorders, Alzheimer's disease) and/or cancer.
An oligonucleotide or a pharmaceutical composition of the present invention is used for example in a method of preventing and/or treating a solid tumor or a hematologic tumor. Examples of cancers preventable and/or treatable by use of the oligonucleotide or pharmaceutical composition of the present invention are breast cancer, lung cancer,
WO 2018/065627
PCT/EP2017/075682 malignant melanoma, lymphoma, skin cancer, bone cancer, prostate cancer, liver cancer, brain cancer, cancer of the larynx, gall bladder, pancreas, testicular, rectum, parathyroid, thyroid, adrenal, neural tissue, head and neck, colon, stomach, bronchi, kidneys, basal cell carcinoma, squamous cell carcinoma, metastatic skin carcinoma, osteo sarcoma, Ewing's sarcoma, reticulum cell sarcoma, liposarcoma, myeloma, giant cell tumor, smallcell lung tumor, islet cell tumor, primary brain tumor, meningioma, acute and chronic lymphocytic and granulocytic tumors, acute and chronic myeloid leukemia, hairy-cell tumor, adenoma, hyperplasia, medullary carcinoma, intestinal ganglioneuromas, Wilm's tumor, seminoma, ovarian tumor, leiomyomater tumor, cervical dysplasia, retinoblastoma, soft tissue sarcoma, malignant carcinoid, topical skin lesion, rhabdomyosarcoma, Kaposi's sarcoma, osteogenic sarcoma, malignant hypercalcemia, renal cell tumor, polycythermia vera, adenocarcinoma, anaplastic astrocytoma, glioblastoma multiforma, leukemia, or epidermoid carcinoma.
In some embodiments two or more oligonucleotides of the present invention are administered together, at the same time point for example in a pharmaceutical composition or separately, or on staggered intervals. In other embodiments, one or more oligonucleotides of the present invention are administered together with another compound such as another oligonucleotide (i.e., not being part of the present invention), an antibody, a small molecule and/or a chemotherapeutic, at the same time point for example in a pharmaceutical composition or separately, or on staggered intervals. In some embodiments of these combinations, the immunosuppression-reverting oligonucleotide inhibits the expression and activity, respectively, of an immune suppressive factor and the other oligonucleotide (i.e., not being part of the present invention), the antibody and/or small molecule inhibits (antagonist) or stimulates (agonist) the same and/or another immune suppressive factor and/or an immune stimulatory factor. The immune suppressive factor is for example selected from the group consisting of IDO1, IDO2, CTLA-4, PD-1, PD-L1, LAG-3, VISTA, A2AR, CD39, CD73, STAT3, TDO2, TIM-3, TIGIT, TGF-beta, BTLA, MICA, NKG2A, KIR, CD160, Chop, Xbpl and a combination thereof. The immune stimulatory factor is for example selected from the group consisting of 4-IBB, 0x40, KIR, GITR, CD27, 2B4 and a combination thereof.
The immune suppressive factor is a factor whose expression and/or activity is for example increased in a cell, tissue, organ or subject. The immune stimulatory factor is a
WO 2018/065627
PCT/EP2017/075682 factor whose level is increased or decreased in a cell, tissue, organ or subject depending on the cell, tissue, organ or subject and its individual conditions.
An antibody in combination with the oligonucleotide or the pharmaceutical composition of the present invention is for example an anti-PD-1 antibody, an anti-PD-Ll antibody, or a bispecific antibody. A small molecule in combination with the oligonucleotide or the pharmaceutical composition of the present invention is for example AMPCP (adenosine 5z-(a,B-methylene)diphosphate; e.g., Structure20, 2161-2173, December 5, 2012), which acts as an ADP analog and is therefore an competitive inhibitor of CD73 activity.
A subject of the present invention is for example a mammalian, a bird or a fish.
Examples
The following examples illustrate different embodiments of the present invention, but the invention is not limited to these examples. The following experiments are performed on cells endogenously expressing CD73, i.e., the cells do not represent an artificial system comprising transfected reporter constructs. Such artificial systems generally show a higher degree of inhibition and lower IC50 values than endogenous systems which are closer to therapeutically relevant in vivo systems. Further, in the following experiments no transfecting agent is used, i.e., gymnotic delivery is performed. Transfecting agents are known to increase the activity of an oligonucleotide which influences the IC50 value (see for example Zhang et al., Gene Therapy, 2011, 18, 326-333; Stanton et al., Nucleic Acid Therapeutics, Vol. 22, No. 5, 2012). As artificial systems using a transfecting agent are hard or impossible to translate into therapeutic approaches and no transfection formulation has been approved so far for oligonucleotides, the following experiments are performed without any transfecting agent.
Example 1: Design of human CD73 antisense oligonucleotides
For the design of antisense oligonucleotides with specificity for human (h)CD73 the hCD73 mRNA sequence with SEQ ID No. 1 (NM_002526.3) and the mCD73 mRNA sequence with SEQ ID No. 2 (NM_0011851.4) was used. 14, 15, 16 and 17mers were designed according to in-house criteria, negl (described in WO2014154843 Al) was used
WO 2018/065627
PCT/EP2017/075682 as control antisense oligonucleotide in all experiments (Table 1). The distribution of hCD73 oligonucleotide binding sites on the hCD73 mRNA are shown in Fig. 1.
Example 2: Efficacy screen of hmCD73 antisense oligonucleotides in human cancer cell lines
In order to analyze the efficacy of hmCD73 antisense oligonucleotides of the present invention with regard to the knockdown of hmCD73 mRNA expression in cancer cell lines, A-172 (human glioblastoma, ATCC), EFO-21 (human ovary cystadenocarcinoma, DSMZ) and mouse 4T1 (mouse mammary gland cells, ATCC) cells were treated with a single dose (concentration: 10μΜ without addition of any transfection reagent; this process is called gymnotic delivery) of the respective antisense oligonucleotide as shown in Fig. 2A, 2B, 2C and 2D. hCD73, hGAPDH and hHPRTl or mCD73 and mHPRTl mRNA expression were analyzed three days later using the QuantiGene Singleplex assay (Affymetrix). hmCD73 mRNA expression values were normalized to hGAPDH (A172), hHPRTl (EFO-21) or mHPRTl (4T1) mRNA expression values, respectively. Strikingly, a knockdown efficiency of >80% and >60 %, respectively, was observed for 5 (A-172 cells); of >80 % for 7 (EFO-21 cells) and of >90% for 10 (4T1 cells) antisense oligonucleotides as indicated in Fig. 2A to 2D.
To further analyze the effects of hmCD73 antisense oligonucleotides on CD73 mRNA expression in cancer cell lines human SKOV-3 (human ovarian adenocarcinoma, ATCC) cells were treated for three days with 10 μΜ of the respective antisense oligonucleotide without addition of any transfection reagent. As control, cells were treated with negl, an oligonucleotide having no sequence complementarity to any human or mouse mRNA. As vehicle control, cells were treated with medium. CD73 expression values were normalized to HPRT1 values and are shown relative to untreated cells (set as 1). Strikingly, hCD73 mRNA levels were reduced by >80 % by 2 of 33 tested antisense oligonucleotides in SKOV-3 cells (see Fig. 2E). Treatment with the control oligonucleotide neg 1 did not reduce CD73 mRNA in the three cell lines.
Exact values of the mean normalized mRNA expression of hmCD73 compared to nontreated cells and the corresponding relative expression of the housekeeping gene mRNA is given below for A-172 cells (Table 2 and 3 for first and second screening rounds), EFO21 cells (Table 4), 4T1 cells (Table 5) and SKOV-3 cells (Table 6):
WO 2018/065627
PCT/EP2017/075682
| Mean hCD73 mRNA expression relative to untreated cells (set as 1) | |
| A05027HM | 0.28 |
| A05018HM | 0.30 |
| A05008HM | 0.31 |
| A05028HM | 0.34 |
| A05009HM | 0.38 |
| A05024HM | 0.41 |
| A05014HM | 0.46 |
| A05001HM | 0.47 |
| A05025HM | 0.48 |
| A05020HM | 0.50 |
| A05026HM | 0.50 |
| A05022HM | 0.52 |
| A05011HM | 0.52 |
| A05015HM | 0.55 |
| A05012HM | 0.58 |
| A05016HM | 0.59 |
| A05017HM | 0.60 |
| A05010HM | 0.64 |
| A05005HM | 0.65 |
| A05019HM | 0.68 |
| A05029HM | 0.70 |
| A05013HM | 0.70 |
| negl | 0.97 |
| untreated control | 1.00 |
Table 2: List of the mean normalized hCD73 mRNA expression values in antisense oligonucleotide-treated A-172 cells compared to non-treated cells of a first screening round.
| Oligo ID | Relative hCD73 mRNA expression (compared to non-treated cells in A-172 cells) |
| A05027HM | 0,12 |
| A05018HM | 0,14 |
| A05008HM | 0,15 |
| A05028HM | 0,17 |
| A05009HM | 0,19 |
| A05014HM | 0,20 |
WO 2018/065627
PCT/EP2017/075682
| A05024HM | 0,22 |
| A05011HM | 0,25 |
| A05026HM | 0,27 |
| A05025HM | 0,27 |
| A05017HM | 0,28 |
| A05001HM | 0,28 |
| A05020HM | 0,30 |
| A05022HM | 0,31 |
| A05015HM | 0,34 |
| A05012HM | 0,35 |
| A05016HM | 0,38 |
| A05010HM | 0,39 |
| A05036HM | 0,39 |
| A05005HM | 0,40 |
| A05029HM | 0,43 |
| A05013HM | 0,45 |
| A05019HM | 0,46 |
| A05023HM | 0,46 |
| A05037HM | 0,47 |
| A05021HM | 0,47 |
| A05006HM | 0,49 |
| A05002HM | 0,50 |
| A05003HM | 0,53 |
| A05004HM | 0,53 |
| A05007HM | 0,56 |
| A05034HM | 0,62 |
| A05033HM | 0,64 |
| A05035HM | 0,64 |
| A05032HM | 0,76 |
| A05031HM | 0,77 |
| neg 1 | 0,94 |
| A05030HM | 1,05 |
Table 3: List of the mean normalized hCD73 mRNA expression values in antisense oligonucleotide-treated A-172 cells compared to non-treated cells of a second screening round.
| Oligo ID | Relative hCD73 mRNA expression (compared to non-treated cells in EFO-21 cells) |
| A05028HM | 0,06 |
| A05018HM | 0,08 |
WO 2018/065627
PCT/EP2017/075682
| A05008HM | 0,12 |
| A05009HM | 0,13 |
| A05025HM | 0,17 |
| A05026HM | 0,17 |
| A05001HM | 0,18 |
| A05002HM | 0,20 |
| A05023HM | 0,21 |
| A05015HM | 0,22 |
| A05017HM | 0,22 |
| A05003HM | 0,22 |
| A05036HM | 0,22 |
| A05019HM | 0,22 |
| A05006HM | 0,24 |
| A05037HM | 0,25 |
| A05022HM | 0,25 |
| A05034HM | 0,27 |
| A05005HM | 0,27 |
| A05032HM | 0,28 |
| A05024HM | 0,29 |
| A05010HM | 0,29 |
| A05033HM | 0,30 |
| A05016HM | 0,30 |
| A05014HM | 0,31 |
| A05027HM | 0,31 |
| A05031HM | 0,31 |
| A05029HM | 0,37 |
| A05013HM | 0,38 |
| A05035HM | 0,40 |
| A05011HM | 0,42 |
| A05007HM | 0,51 |
| A05004HM | 0,55 |
| A05020HM | 0,56 |
| A05012HM | 0,56 |
| A05021HM | 0,61 |
| A05030HM | 0,71 |
| negl | 1,09 |
Table 4: List of the mean normalized hCD73 mRNA expression values in antisense oligonucleotide-treated EFO-21 cells compared to non-treated cells.
WO 2018/065627
PCT/EP2017/075682
| Oligo ID | Relative mCD73 mRNA expression (compared to non-treated cells in 4T1 cells) |
| A05018HM | 0,01 |
| A05020HM | 0,02 |
| A05035HM | 0,03 |
| A05010HM | 0,04 |
| A05001HM | 0,05 |
| A05027HM | 0,06 |
| A05011HM | 0,06 |
| A05036HM | 0,06 |
| A05012HM | 0,08 |
| A05008HM | 0,10 |
| A05017HM | 0,10 |
| A05007HM | 0,15 |
| A05031HM | 0,15 |
| A05022HM | 0,15 |
| A05029HM | 0,15 |
| A05016HM | 0,16 |
| A05015HM | 0,16 |
| A05033HM | 0,16 |
| A05013HM | 0,18 |
| A05030HM | 0,20 |
| A05009HM | 0,23 |
| A05034HM | 0,28 |
| A05005HM | 0,28 |
| A05002HM | 0,29 |
| A05025HM | 0,35 |
| A05032HM | 0,37 |
| A05028HM | 0,41 |
| A05019HM | 0,44 |
| A05003HM | 0,47 |
| A05021HM | 0,48 |
| A05006HM | 0,52 |
| A05014HM | 0,70 |
| A05026HM | 0,79 |
| A05023HM | 0,97 |
| A05024HM | 1,17 |
| negl | 1,39 |
| A05037HM | 1,41 |
| A05004HM | 1,70 |
WO 2018/065627
PCT/EP2017/075682
Table 5: List of the mean normalized mCD73 mRNA expression values in antisense oligonucleotide-treated 4T1 cells compared to non-treated cells.
| Oligo ID | Relative mCD73 mRNA expression (compared to nontreated cells in SKOV-3 cells) |
| A05008HM | 0.14 |
| A05028HM | 0.15 |
| A05037HM | 0.23 |
| A05018HM | 0.25 |
| A05025HM | 0.26 |
| A05034HM | 0.28 |
| A05016HM | 0.30 |
| A05003HM | 0.30 |
| A05001HM | 0.32 |
| A05017HM | 0.32 |
| A05015HM | 0.34 |
| A05036HM | 0.34 |
| A05022HM | 0.37 |
| A05027HM | 0.39 |
| A05035HM | 0.41 |
| A05005HM | 0.42 |
| A05013HM | 0.42 |
| A05006HM | 0.42 |
| A05023HM | 0.43 |
| A05011HM | 0.45 |
| A05019HM | 0.45 |
| A05002HM | 0.45 |
| A05031HM | 0.46 |
| A05010HM | 0.50 |
| A05029HM | 0.51 |
| A05007HM | 0.56 |
| A05020HM | 0.56 |
| A05012HM | 0.59 |
| A05004HM | 0.63 |
| A05032HM | 0.64 |
| A05021HM | 0.74 |
| A05033HM | 0.83 |
| negl | 0.85 |
Table 6: Mean normalized hmCD73 mRNA expression values in antisense oligonucleotide-treated SKOV-3 cells relative to untreated cells (set as 1).
WO 2018/065627
PCT/EP2017/075682
Example 3: Correlation analysis of antisense oligonucleotide efficacy in human EFO-21 compared to A-172 cells and human A172 compared to mouse 4T1 cells
To further select the candidates with the highest activity in the three tested cell lines, A172, EFO-21 and 4T1, a correlation analysis was performed (data derived from Fig. 2B to 2D). As depicted in Fig. 3A and Fig. 3B, 5 potent antisense oligonucleotides for determination of IC50 in A-172, EFO-21 and 4T1 cells, namely A05008HM (SEQ ID No. 4), A05009HM (SEQ ID No. 6), A05018HM (SEQ ID No. 3), A05026HM (SEQ ID No. 8), and A05028HM (SEQ ID No. 5) (marked in black) were selected. Importantly, the control antisense oligonucleotide negl had no negative influence on the expression of hmCD73 in all three tested cell lines.
Example 4: IC50 determination of selected hmCD73 antisense oligonucleotides in SKOV3 cells and EFO-21 cells, respectively (mRNA level)
In order to determine the ICsoof the hmCD73 antisense oligonucleotides A05008HM (SEQ ID No. 4), A05009HM (SEQ ID No. 6), A05018HM (SEQ ID No. 3), A05026HM (SEQ ID No. 8), and A05028HM (SEQ ID No. 5), SKOV-3 cells (human ovarian cancer cells, ATCC) were treated with titrated amounts of the respective antisense oligonucleotide (concentrations: 10 μΜ, 3.3 μΜ, 1.1 μΜ, 370 nM, 120 nM, 41 nM, 14 nM, or 4.5 nM (Fig. 4A). hmCD73 mRNA expression was analyzed three days later. As shown in Fig. 4A and in the following Table 7, the antisense oligonucleotides A05008HM (SEQ ID No. 4), A05018HM (SEQ ID No. 3) and A05028HM (SEQ ID No. 5) had the highest potency in SKOV-3 cells with regard to downregulation of hmCD73 mRNA compared to untreated cells with a maximal target inhibition of 86%, 88% and 75%, respectively. Concentration-dependent target knockdown in SKOV-3 cells was used for calculation of IC50 values shown in Table 7:
| mRNA inhibition [in %] | |||||||||
| ASO | IC50 [nM] | 10 μΜ | 3.3 μΜ | 1.1 μΜ | 0.4 μΜ | 0.12 μΜ | 0.04 μΜ | 0.013 μΜ | 0.0045 μΜ |
| A05008HM | 192 | 85.92 | 72.23 | 65.64 | 51.76 | 52.16 | 36.88 | 20.90 | 21.43 |
| A05009HM | 435 | 67.29 | 57.89 | 56.94 | 52.79 | 43.98 | 33.28 | 33.38 | 22.46 |
| A05018HM | 44 | 88.13 | 82.96 | 77.08 | 67.03 | 55.93 | 45.58 | 45.75 | 31.75 |
| A05026HM | 2660 | 64.18 | 47.07 | 38.13 | 27.29 | 23.20 | 10.84 | -13.94 | -36.38 |
| A05028HM | 725 | 75.28 | 63.17 | 51.86 | 44.35 | 34.59 | 14.74 | 17.82 | 20.38 |
Table 7: Overview of IC50 values and target inhibition of selected hmCD73 antisense oligonucleotides in SKOV-3 cells.
WO 2018/065627
PCT/EP2017/075682
IC50 values of selected hmCD73-specific antisense oligonucleotides were determined in a further test in EFO-21 cells. Therefore, EFO-21 cells were treated with 10 μΜ, 3.3 μΜ,
1.1 μΜ, 370 nM, 120 nM, 41 nM, 14 nM, or 4.5 nM of A05018HM (SEQ ID No.3), A05027HM (SEQ ID No.30), A05028HM (SEQ ID No.5), and A05037HM (SEQ ID No.39). hCD73 mRNA expression was analyzed after 3 days of treatment. Fig. 4 B depicts the concentration-dependent reduction of hmCD73 mRNA expression by hmCD73 antisense oligonucleotides. ICso-values were calculated by GraphPad Prism and are shown in Table 8:
| mRNA inhibition [in % | |||||||||
| ASO | IC5o[nM] | 10 μΜ | 3.3 μΜ | 1.1 μΜ | 0.4 μΜ | 0.12 μΜ | 0.04 μΜ | 0.013 μΜ | 0.0045 μΜ |
| A05018HM | 127.8 | 85.83 | 83.97 | 78.78 | 63.56 | 43.32 | 11.24 | 0.00 | 1.53 |
| A05027HM | 448.3 | 80.01 | 75.74 | 60.10 | 38.92 | 13.23 | 7.26 | 2.10 | 1.91 |
| A05028HM | 139.4 | 85.73 | 84.12 | 77.46 | 59.98 | 34.64 | 15.76 | 0.24 | 0.00 |
| A05037HM | 140.8 | 80.04 | 77.03 | 72.66 | 56.83 | 31.80 | 6.52 | 0.00 | 0.00 |
Table 8: ICso-values and target inhibition of selected hmCD73 antisense oligonuleotides in EFO-21 cells
Example 5: Third screening round of hmCD73 antisense oligonucleotides in human and mouse cancer cell lines
For a third screening round, new antisense oligonucleotides were designed. These antisense oligonucleotides were based on efficient antisense oligonucleotides from the first screening round with modifications in length, exact position on mRNA and chemical modification pattern. Human EFO-21 (ovary cystadenocarcinoma) (Fig. 5A), human SKOV-3 (ovarian adenocarcinoma) (Fig. 5B) and mouse 4T1 (breast cancer) (Fig. 5C) cells were treated for three days with 10 μΜ of the respective antisense oligonucleotide without addition of any transfection reagent. As control, cells were treated with S6, an oligonucleotide having no sequence complementarity to any human or mouse mRNA. As vehicle control, cells were treated with medium. The antisense oligonucleotides A05008HM, A05018HM, and A05028HM that had shown potent activity in the first screening round were used as reference. Values of the mean mRNA expression of hmCD73 normalized to HPRT1 (Fig. 5A-C) relative to non-treated cells (set as 1) are
WO 2018/065627
PCT/EP2017/075682 listed for EFO-21 cells (Table 9), SKOV-3 cells (Table 10) and 4T1 cells (Table 11). Strikingly, CD73 mRNA levels were reduced by >80 % by 11 of 13 tested ASOs in EFO21 cells (see Fig. 5A), by >80 % by 7 of 13 tested ASOs in SKOV-3 cells (see Fig. 5B), and by >80 % by 9 of 13 tested ASOs in 4T1 cells (see Fig. 5C). Treatment with the 5 control oligonucleotide S6 did not reduce CD73 mRNA potently in the three cell lines.
| Oligo ID | hCD73 mRNA expression relative to untreated cells (set as 1) |
| A05038HM | 0.09 |
| A05041HM | 0.09 |
| A05040HM | 0.10 |
| A05044HM | 0.11 |
| A05008HM | 0.11 |
| A05043HM | 0.12 |
| A05018HM | 0.12 |
| A05039HM | 0.12 |
| A05028HM | 0.15 |
| A05042HM | 0.17 |
| A05001HM | 0.19 |
| A05045HM | 0.24 |
| S6 | 0.75 |
Table 9: Mean normalized hmCD73 mRNA expression values in antisense oligonucleotide-treated EFO-21 cells relative to untreated cells (set as 1).
| Oligo ID | hCD73 mRNA expression relative to untreated cells (set as 1) |
| A05041HM | 0.10 |
| A05008HM | 0.12 |
| A05044HM | 0.13 |
| A05038HM | 0.13 |
| A05042HM | 0.17 |
| A05028HM | 0.18 |
| A05043HM | 0.19 |
| A05040HM | 0.21 |
| A05001HM | 0.26 |
| A05039HM | 0.26 |
| A05018HM | 0.31 |
| A05045HM | 0.46 |
| S6 | 0.85 |
WO 2018/065627
PCT/EP2017/075682
Table 10: Mean normalized hmCD73 mRNA expression values in antisense oligonucleotide-treated SKOV-3 cells relative to untreated cells (set as 1).
| Oligo ID | mCD73 mRNA expression relative to untreated cells (set as 1) |
| A05018HM | 0.03 |
| A05041HM | 0.04 |
| A05028HM | 0.05 |
| A05042HM | 0.06 |
| A05044HM | 0.08 |
| A05043HM | 0.09 |
| A05008HM | 0.11 |
| A05001HM | 0.13 |
| A05038HM | 0.14 |
| A05040HM | 0.51 |
| A05045HM | 0.53 |
| A05039HM | 0.67 |
| S6 | 0.99 |
Table 11: Mean normalized hmCD73 mRNA expression values in antisense oligonucleotide-treated 4T1 cells relative to untreated cells (set as 1).
Example 6: IC50 determination of selected hmCD73 antisense oligonucleotides of the third screening round in EFO-21 cells (mRNA level)
The hmCD73 antisense oligonucleotides A05038HM (SEQ ID No.42), A05041HM (SEQ ID No.45), A05042HM (SEQ ID No.45), and A05044HM (SEQ ID No.46) had shown potent single-does activity in the three cell lines EFO-21, SKOV-3 and 4T1. In order to investigate the concentration-dependency of effects and to determine the IC50 values EFO-21- cells were treated with 10 μΜ, 3.3 μΜ, 1.1 μΜ, 370 nM, 120 nM, 41 nM, 14 nM or 4.5 nM of the respective antisense oligonucleotide. The antisense oligonucleotide A05018HM that showed potent activity in the first screening round was used as reference. hCD73 mRNA expression was analyzed after 3 days of treatment. Fig. 6 depicts the concentration-dependent reduction of hCD73 expression by hmCD73 antisense oligonucleotides. ICso-values calculated by GraphPad Prism are shown in Table 12:
WO 2018/065627
PCT/EP2017/075682
| mRNA inhibition [%] | ||||||||
| ASO | ICso (nM) | ΙΟμΜ | 3.33μΜ | Ι.ΙΙμΜ | 0.37μΜ | 0.12μΜ | 0.014μΜ | 0.0045μΜ |
| A05018HM | 288.8 | 86.49 | 83.98 | 76.60 | 59.51 | 34.11 | 20.73 | 22.17 |
| A05038HM | 558.2 | 89.14 | 79.80 | 59.80 | 42.38 | 23.60 | 5.80 | 6.81 |
| A05041HM | 357.5 | 87.42 | 80.26 | 64.10 | 47.95 | 23.04 | 12.08 | 2.90 |
| A05042HM | 631.0 | 80.40 | 73.49 | 57.03 | 43.47 | 24.71 | 25.01 | 1.49 |
| A05044HM | 345.2 | 89.70 | 83.29 | 73.75 | 54.18 | 30.39 | 18.10 | 16.20 |
Table 12: ICso-values and target inhibition of selected hmCD73 antisense oligonucleotides at titrated concentrations in EFO-21 cells
Example 7: Concentration dependent effect on CD73 protein expression and cell viability by A05008HM (SEQ ID No. 4), A05018HM (SEQ ID No. 3) and A05028HM (SEQ ID No. 5)
The highly potent hmCD73 antisense oligonucleotides A05008HM (SEQ ID No. 4), A05018HM (SEQ ID No. 3) and A05028HM (SEQ ID No. 5) were characterized in detail with regard to their knockdown efficacy on the hCD73 protein expression and their influence on cell viability at different concentrations. SKOV-3 cells were therefore treated with different concentrations of the respective antisense oligonucleotide for three days. Then, cells were cultivated for further three days in fresh DMEM medium containing the antisense oligonucleotide at the indicated concentration. Protein expression was analyzed by flow cytometry using the CD73 antibody (clone AD2) and 7AAD to investigate viability. As shown in Fig. 7A, all three antisense oligonucleotides show potent inhibition of hCD73 protein at all indicated concentrations, whereas treatment with negl had no inhibitory effect. However, cell viability was partially affected by A05028HM (Fig. 7B). In contrast, A05008HM (SEQ ID No. 4) and A05018HM (SEQ ID No. 3) did not affect viability of SKOV-3 cells in any of the conditions tested. Table 13 summarizes protein knockdown efficiency of the selected human CD73 antisense oligonucleotides A05008HM (SEQ ID No. 4), A05018HM (SEQ ID No. 3) and A05028HM (SEQ ID No. 5) in SKOV-3 cells:
| Inhibition [%] (Protein/mRNA) | |||||
| ASO | ΙΟμΜ | 5μΜ | ΙμΜ | Ο,δμΜ | Ο,ΙμΜ |
| Α05008ΗΜ | 66,11 | 69,25 | 49,60 | 43,76 | 22,81 |
| Α05018ΗΜ | 77,71 | 77,46 | 54,12 | 43,87 | 9,61 |
| Α05028ΗΜ | 87,43 | 77,66 | 53,40 | 54,78 | 23,16 |
| negl | 13,20 | -18,21 | 11,32 | 5,48 | -7,38 |
WO 2018/065627
PCT/EP2017/075682
Table 13: inhibition of CD73 protein expression of selected hmCD73 antisense oligonucleotides at titrated concentrations in SKOV-3 cells
Example 8: Effect of CD73 protein knockdown on extracellular pyrophosphate levels in human EFO-21 and SKOV-3 cells
Adenosine is one major immunosuppressive molecule generated during ATP degradation by hmCD73. Adenosine can be detected indirectly by the generation of pyrophosphate during the degradation of AMP to adenosine by a colorimetric phosphate assay kit (ab65622, abeam). Therefore, human SKOV-3 and EFO21 cells were treated with 5μΜ antisense oligonucleotide A05018HM for 6 days (3+3). After 3 days, DMEM medium was replaced against fresh DMEM medium containing 5μΜ of the antisense oligonucleotide. Protein knockdown of CD73 in both tested cell lines was confirmed after 6 days by flow cytometry (Fig. 8). As a control, cells were treated with negl (Fig. 8). Generation of free phosphate by EFO-21 cells (Fig. 9A) and SKOV-3 cells (Fig. 9C) was analyzed in cell supernatants after addition of 500μΜ AMP to the cells at indicated time points. Treatment with the antisense oligonucleotides did not affect cell viability of EFO-21 cells (Fig. 9B) and SKOV-3 cells (Fig. 9D) as investigated by the cell titer blue assay. Strikingly, phosphate production efficacy was clearly reduced for EFO-21 and SKOV-3 cells after treatment with A05018HM (Fig. 9A, 9C) resulting in about 1,5 x lower phosphate concentrations compared to cells treated with the negative control neg 1 and compared to non-treated cells (Fig. 9A, 9C, Table 14). Therefore, adenosine production of cancer cells can be effectively blocked by anti-CD73 specific antisense oligonucleotide treatment. In Table 14, phosphate concentrations derived from cell supernatants of SKOV-3 and EFO21 cells treated with A05018HM are given as well as concentrations derived from the corresponding control reactions:
| cPhosphate [nmoles/ΙΟΟμΙ] in supernatants of EFO-21 cells at different timepoints after addition of AMP [500μΜ] | cPhosphate [nmoles/ΙΟΟμΙ] in supernatants of SKOV-3 cells at different timepoints after addition of AMP [500uM] | |||||||||
| ASO | 10 min | 20 min | 40 min | 60 min | 80 min | 10 min | 20 min | 40 min | 60 min | 80 min |
| A05018HM | 3,38 | 3,91 | 5,06 | 6,25 | 7,50 | 3,38 | 3,37 | 3,73 | 4,51 | 5,48 |
| negl | 4,03 | 5,84 | P | 8,56 | 9,82 | 4,03 | 4,03 | 4,56 | 5,72 | 6,53 |
| No ASO | 4,53 | 5,84 | 8,07 | 9,94 | 11,23 | 4,53 | 4,68 | 6,34 | 7,23 | 9,06 |
| AMP+Buffer | 0,63 | 0,63 | 0,63 | 1,74 | 1,77 | 0,63 | 0,63 | 0,63 | 1,74 | 1,77 |
| Buffer | 0,63 | 0,63 | 0,63 | 0,01 | 1,73 | 0,63 | 0,63 | 0,63 | 1,67 | 1,73 |
WO 2018/065627
PCT/EP2017/075682
Table 14: Determination of phosphate concentration as indirect detection method for adenosine in supernatants of human EFO-21 and SKOV-3 cells after CD73 protein knockdown and after addition of exogenous AMP to the cells.
Example 9: Investigation of the effect of hmCD73-specific antisense oligonucleotide on degradation of extracellular AMP and the conversion to adenosine by a human ovarian cancer cell line
A05018HM had shown significant activity in suppressing hCD73 mRNA and protein expression in human cancer cells. In the following experiments, the effect of hmCD73 antisense oligonucleotide treatment on the capacity to degrade extracellular AMP to immunosuppressive adenosine was investigated in EFO-21 cells.
AMP- as well as adenosine levels can be determined by mass spectrometry. In order to analyze the effect of hmCD73 antisense oligonucleotide treatment on the capacity of human EFO-21 cells to convert extracellular AMP to adenosine, cells were treated with 5 μΜ of the antisense oligonucleotide A05018HM or the control oligonucleotide S6 for a total treatment time of 6 days. As vehicle control, cells were treated with medium only.
CD73 protein expression was analyzed by flow cytometry after 6 days of treatment and was significantly suppressed in cells treated with A05018HM (black column) compared to cells treated with S6 (white column; Fig. 10A). To investigate the capacity to degrade extracellular AMP, cell culture media was replaced by PBS supplemented with 300 μΜ of AMP after 6 days of treatment and incubated for 6.5 h. To investigate the degradation of AMP in the absence of cells, 300 μΜ of AMP was added to cell-free PBS and was incubated for 6.5 h (dotted column).
Thereafter, AMP and adenosine levels were determined in cell-supernatants (cellconditioned PBS) and cell-free PBS by mass spectrometry. AMP-levels in cellsupernatants of untreated cells (dotted column) were potently reduced compared with AMP-levels in cell-free PBS (striped column; Fig. 10B), while adenosine levels were increased (Fig. 10C). This indicates a strong cell-associated capacity for conversion of AMP to adenosine. Strikingly, in supernatants of A05018HM treated EFO-21 cells (black column) AMP levels were significantly increased and adenosine levels were significantly decreased, when compared to supernatants of S6-treated (white column), or vehicle
WO 2018/065627
PCT/EP2017/075682 treated cells (dotted column; Fig. 10B and IOC, Table 15 and 16). Accordingly, these data clearly indicate that treatment of human EFO-21 cells with A05018HM, significantly inhibits the capacity of cells to convert extracellular AMP to immunosuppressive adenosine.
| Relative AMP concentrations in cell supernatants relative to cell-free PBS (set as 1) after treatment with AMP | Mean | ± SD | |
| EFO-21 cells | A05018HM | 0.64 | 0.05 |
| S6 | 0.16 | 0.07 | |
| untreated control | 0.14 | 0.04 |
Table 15: Determination of relative AMP concentrations in cell supernatants relative to cell-free PBS (set as 1) after treatment of EFO-21 cells with AMP.
| Absolute adenosine concentrations in cellsupernatants after treatment with AMP | Mean [μΜ] | ± SD | |
| EFO-21 cells | A05018HM | 0.069 | 0.003 |
| S6 | 0.375 | 0.074 | |
| untreated control | 0.380 | 0.042 |
Table 16: Determination of absolute adenosine concentrations in cell supernatants after treatment of EFO-21 cells with AMP.
Example 10: Investigation of the effect of hmCD73-specific antisense oligonucleotide on T cell proliferation in the presence or absence of extracellular AMP
The previous results (see Example 9) in the present invention revealed that treatment of human cancer cell lines with A05018HM significantly inhibits their capacity to convert extracellular AMP to adenosine. Since the CD39-CD73 axis plays an important role for T cell function the effects of A05018HM on proliferation of human CD4+ T cells in the presence or absence of extracellular AMP was investigated. Therefore, human CD4+ T cells were labelled with cell proliferation dye, activated with anti-CD3 and treated with 5 μΜ of the antisense oligonucleotide A05018HM (black column) or the control oligonucleotide S6 (white column) for a total treatment time of 5 days. In the vehicle control (striped column), cells were activated with anti-CD3 only. Subsequently, 300 μΜ
WO 2018/065627
PCT/EP2017/075682 of AMP or vehicle were added to cells on day 3 and day 4 after start of oligonucleotide treatment. On day 5 after start of oligonucleotide treatment, CD73 protein expression, proliferation, and absolute cell numbers of CD4+ T cells were analyzed using Flow Cytometry.
A05018HM treatment of CD4+ T cells potently suppressed CD73 protein expression (Fig. 11A). In the absence of extracellular AMP, no differences in proliferation (Fig. 11B upper panel), or absolute cell numbers (Fig. 11C) were observed between A05018HM-, S6- and vehicle-treated CD4+ T cells. Strikingly, supplementation with 300 μΜ of AMP impaired proliferation (Fig. 11B lower panel) and significantly reduced absolute numbers (Fig. 11C) of CD4+ T cells treated with S6 or vehicle. In contrast, proliferation (Fig 11B in lower panel) of A05018HM treated CD4+ T cells was not impaired by supplementation of cell culture medium with AMP. Accordingly, absolute T cell numbers (Fig. 11C) were almost not reduced by AMP-supplementation in A05018HM-treated cells.
In summary, these results revealed that supplementation of cell culture medium with AMP significantly impaired proliferation and absolute cell numbers of CD73 expressing CD4+ T cells. Strikingly, CD73-protein knockdown by A05018HM-treatment reversed the inhibitory effects of supplemented AMP on T cell proliferation most probably by inhibition of formation of immunosuppressive adenosine.
Example 11: In vivo mCD73 mRNA knockdown by human I mouse cross-reactive CD73 antisense oligonucleotide (A05027HM) in mouse liver
The potent hmCD73 antisense oligonucleotide A05027HM was selected and its effects on mCD73 mRNA expression in livers of Balb/c mice after systemic administration of unformulated oligonucleotide were investigated. Therefore, Balb/c mice were treated with subcutaneous injections of A05027HM at a dose of 20 mg/kg on days 1,2,3,4,5,8,10, and 12 (5 mice I group). As control, Balb/c mice were treated with vehicle (saline, six mice I group). Three days after the last antisense oligonucleotide treatment (day 15), mice were sacrificed and livers were sampled for analysis of mCD73 mRNA levels. The results depicted in Fig. 12 show mCD73 mRNA levels in livers of A05027HM- or vehicletreated mice (white column). Strikingly, mCD73 mRNA levels were significantly (p=0.0043) reduced upon treatment of mice with A05027HM when compared to vehicle controls.
Claims (14)
1. An immunosuppression-reverting oligonucleotide comprising 12 to 18 nucleotides, wherein at least one of the nucleotides is modified, and the oligonucleotide hybridizes with a nucleic acid sequence of an ectoenzyme (CD73) of SEQ ID NO.l (human) and/or of a sequence of SEQ ID NO.2 (mouse), wherein the oligonucleotide inhibits at least 50 % of the CD73 expression.
2. The oligonucleotide of claim 1, wherein the modified nucleotide is selected from the group consisting of a bridged nucleic acid such as LNA, cET, ENA, 2'Fluoro modified nucleotide, 2'0-Methyl modified nucleotide and combinations thereof.
3. The oligonucleotide of claim 1 or 2 hybridizing with CD73 of SEQ ID.NO.l and/or SEQ ID NO.2 comprising a sequence selected from the group consisting of SEQ ID NO.3, SEQ ID NO.4, SEQ ID NO.5, SEQ ID NO.6, SEQ ID NO.7, SEQ ID NO.8, SEQ ID NO.9, SEQ ID NO.10, SEQ ID NO.11, SEQ ID NO.12, SEQ ID NO.13, SEQ ID NO.14, SEQ ID NO.15, SEQ ID NO.16, SEQ ID NO.17, SEQ ID NO.18, SEQ ID NO.19, SEQ ID NO.20, SEQ ID NO.21, SEQ ID NO.22, SEQ ID NO.23, SEQ ID NO.24, SEQ ID NO.25, SEQ ID NO.26, SEQ ID NO.27, SEQ ID NO.28, SEQ ID NO.29, SEQ ID NO.30, SEQ ID NO.31, SEQ ID NO.32, SEQ ID NO.33, SEQ ID NO.34, SEQ ID NO.35, SEQ ID NO.36, SEQ ID NO.37, SEQ ID NO.38, SEQ ID NO.39, SEQ ID NO.42, SEQ ID NO.43, SEQ ID NO.44, SEQ ID NO.45, SEQ ID NO.46, SEQ ID NO.47, and combinations thereof.
4. The oligonucleotide of any one of claims 1 to 3, wherein the oligonucleotide is selected from the group consisting of +G*+A*+T*T*T*C*C*C*A*G*T*G*C*+C*+A*+T (A05018HM), +g*+C*+T*G*T*G*C*A*C*G*T*C*+G*+T*+T (A05008HM), +T*+G*+A^^*T*C*C*C*A*G*T*G*C*+C*+A*+T (A05028HM), +G*+G*+C*T*G*T*G*C*A*C*G*T*C*+G*+T(A05009HM), +c*+t*+C*A*G*A*A*T*T*G*G*A*A*+A*+T*+T (A05019HM), +A*+c*+T*C*G*A*C*A*C*T*T*G*G*+T*+G*+C (A05026HM), +C*+T*+G*T*G*C*A*C*G*T*C*+G*+T*+T(A05001HM), +A*+G*C*A*C*G*T*T*G*G*G*T*+T*+C (A05002HM), +A*+c*+G*G*T*GN^*A*C*C*A*+G*+A*+T (A05003HM), +G*+c*+A*T*A*G*G*C*C*T*G*+G*+A*+C (A05004H), +c*+t*+C*G*A*C*A*C*T*T*G*G*+T*+G (A050005HM),
WO 2018/065627
PCT/EP2017/075682 +A*+C*+T*C*G*A*C*A*C*T*T*+G*+G*+T (A05006HM), +G*+G*+C*A*C*T*C*G*A*C*A*+C*+T*+T (A05007HM), +G*+T*+C*C*T*C*C*C*A*C*C*A*+C*+G*+A (A05010HM), +G*+T*C*C*T*C*C*C*A*C*C*A*C*G*+A (A05011HM), +T^G*T*CCTC*C*C*A*C*CfrAfrC*W (A05012HM), +G*+A*G*T*G*T*C*C*T*C*C*C*A*C*+C (A05013HM), +T*+C*+G*A*C*A*CM1*T*G*G*T*+G*+C*+A (A05014HM), +C*+T*+C*G*A*C*A*C*T*T*G*G*+T*+G*+C (A05015HM), +a*+c*+T*C*G*A*C*A*C*T*T*+G*G*T*+G (A05016HM), +C*+A*+C*T*C*G*A*C*A*C*T*T*+G*+G*+T (A05017HM), yr*+G*+T*C*C*T*C*C*C*A*C*C*A*+C*+G*+A(A05020HM), +G*+T*G*T*C*C*T*C*C*C*A*C*C*+A*+C*+G (A05021HM), +G*+A*G*T*G*T*C*C*T*C*C*C*A*C*+C*+A (A05022HM), +G*t*+G*T*T*G*G*A*G*T*G*T*C*C*+T*+C (A05023HM), +C*+T*+C*G*A*C*A*C*T*T*G*G*T*+G*+C*+A (A05024HM), +C*+T*+C*G*A*C*A*C^*T*G*G*T*G*+C*+A (A05025HM), +G*+C*+A*C^*C*G*A*C*A*C*T*T*+G*+G*+T (A05027HM), +G*+T*+G*T*C*C*T*C*C*C*A*C*C*A*+C*+G*+A (A05029HM), +A*+G*+T*G*T*C*C*T*C*C*C*A*C*C*+A*+C*+G (A05030HM), +G*+A*G*T*G*T*C*C*T*C*C*C*A*C*C*A*+C (A05031HM), +G*A*G*T*G*T*C*C*T*C*C*C*A*C*+C*A*+C (A05032HM), +G*A*G*T*G*T*C*C*T*C*C*C*A*C*C*+A*-i-C (A05033HM), +A*+C*+T*C*G*A*C*A*C*T*T*G*G*T*+G*+C*+A (A05034HM), +A*+C*+T*C*G*A*C*A*C^*T*G*G*T*G*+C*+A (A05035HM), +G*+G*+C*A*C^*C*G*A*C*A*C*T*T*+G*+G*+T (A05036HM), +G*+G*CA*C*T*C*G*A*C*A*C*T*T*+G*+G*+T (A05037HM), +G*+C^*G*T*G*C*A*C*G*T*C*+G*+T*+T (A05038HM), +C*G*+G*C*T*G*T*G*C*A*C*G*T*C*G*+T*+T (A05039HM), +G*+G*+C^*G*T*G*C*A*C*G*T*C*+G*+T (A05040HM), +G*+A*+T*T*T*C*C*C*A*G*T*G*C*C*+A*+T (A05041HM), +G*+A*T*T*T*C*C*C*A*G*T*G*C*+C*+A*+T (A05042HM), yr*+G*+AM,M,M,*C*C*CWO*T*G*+C*C*+A*+T(A05043HM), yr*+G*+AM,M,M,*C*C*CWO*T*G*C*C*+A*+T(A05044HM), +C*+A*+T*G*A*T*T*T*C*C*C*A*G*T*G*+C*+C (A05045HM),
WO 2018/065627
PCT/EP2017/075682 and combinations thereof, wherein + indicates an LNA nucleotide and * indicates a phosphorothioate (PTO) linkage between the nucleotides.
5. The oligonucleotide of any one of claims 1 to 4, wherein the oligonucleotide inhibits the expression of CD73 at a nanomolar concentration.
6. A pharmaceutical composition comprising an immunosuppression-reverting oligonucleotide of any one of claims 1 to 5 and a pharmaceutically acceptable carrier, excipient and/or dilutant.
7. The pharmaceutical composition of claim 6, further comprising a chemotherapeutic such as platinum, gemcitabine, another oligonucleotide, an antibody and/or a small molecule.
8. The pharmaceutical composition of claim 7, wherein the other oligonucleotide, the antibody and/or the small molecule inhibits or stimulates an immune suppressive factor and/or an immune stimulatory factor.
9. The pharmaceutical composition of claim 8, wherein the immune suppressive factor is selected from the group consisting of IDO1, IDO2, CTLA-4, PD-1, PD-L1, LAG-3, VISTA, A2AR, CD39, CD73, STAT3, TDO2, TIM-3, TIGIT, TGF-beta, BTLA, MICA, NKG2A, KIR, CD 160, Chop, Xbpl and a combination thereof.
10. The pharmaceutical composition of claim 8, wherein the immune stimulatory factor is selected from the group consisting of 4-IBB, 0x40, KIR, GITR, CD27, 2B4 and a combination thereof.
11. The immunosuppression-reverting oligonucleotide of any one of claims 1 to 5 or the pharmaceutical composition of any one of claims 6 to 10 for use in a method of preventing and/or treating a disorder, where a CD73 imbalance is involved.
12. The immunosuppression-reverting oligonucleotide or the pharmaceutical composition for use according to claim 11, wherein the disorder is an autoimmune disorder, an immune disorder, a psychiatric disorder and/or cancer.
WO 2018/065627
PCT/EP2017/075682
13. The immunosuppression-reverting oligonucleotide or the pharmaceutical composition for use according to claim 11, wherein the cancer is breast cancer, lung cancer, malignant melanoma, lymphoma, skin cancer, bone cancer, prostate cancer, liver cancer, brain cancer, cancer of the larynx, gall bladder, pancreas, testicular, rectum, parathyroid, thyroid, adrenal, neural tissue, head and neck, colon, stomach, bronchi, kidneys, basal cell carcinoma, squamous cell carcinoma, metastatic skin carcinoma, osteo sarcoma, Ewing's sarcoma, reticulum cell sarcoma, liposarcoma, myeloma, giant cell tumor, smallcell lung tumor, islet cell tumor, primary brain tumor, meningioma, acute and chronic lymphocytic and granulocytic tumors, acute and chronic myeloid leukemia, hairy-cell tumor, adenoma, hyperplasia, medullary carcinoma, intestinal ganglioneuromas, Wilm's tumor, seminoma, ovarian tumor, leiomyomater tumor, cervical dysplasia, retinoblastoma, soft tissue sarcoma, malignant carcinoid, topical skin lesion, rhabdomyosarcoma, Kaposi's sarcoma, osteogenic sarcoma, malignant hypercalcemia, renal cell tumor, polycythermia vera, adenocarcinoma, anaplastic astrocytoma, glioblastoma multiforma, leukemia, or epidermoid carcinoma.
14. The immunosuppression-reverting oligonucleotide or the pharmaceutical composition for use according to any one of claims 11 to 13, wherein the oligonucleotide or the composition is suitable to be administered locally or systemically.
Applications Claiming Priority (5)
| Application Number | Priority Date | Filing Date | Title |
|---|---|---|---|
| EP16192798 | 2016-10-07 | ||
| EP16192798.3 | 2016-10-07 | ||
| EP17187805.1 | 2017-08-24 | ||
| EP17187805 | 2017-08-24 | ||
| PCT/EP2017/075682 WO2018065627A1 (en) | 2016-10-07 | 2017-10-09 | Immunosuppression-reverting oligonucleotides inhibiting the expression of cd73 |
Publications (1)
| Publication Number | Publication Date |
|---|---|
| AU2017339581A1 true AU2017339581A1 (en) | 2019-05-02 |
Family
ID=60153282
Family Applications (1)
| Application Number | Title | Priority Date | Filing Date |
|---|---|---|---|
| AU2017339581A Abandoned AU2017339581A1 (en) | 2016-10-07 | 2017-10-09 | Immunosuppression-reverting oligonucleotides inhibiting the expression of CD73 |
Country Status (7)
| Country | Link |
|---|---|
| EP (1) | EP3523436A1 (en) |
| JP (1) | JP2019531095A (en) |
| KR (1) | KR20190077390A (en) |
| CN (1) | CN110168088A (en) |
| AU (1) | AU2017339581A1 (en) |
| CA (1) | CA3039077A1 (en) |
| WO (1) | WO2018065627A1 (en) |
Families Citing this family (8)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| BR102018001541B1 (en) * | 2018-01-24 | 2021-05-11 | Universidade Federal Do Rio Grande Do Sul | nanometric pharmaceutical composition in the form of liposomes or nanoemulsion containing specific interfering RNA sequences |
| SG11202106963YA (en) | 2019-01-11 | 2021-07-29 | Omeros Corp | Methods and compositions for treating cancer |
| CA3152754A1 (en) * | 2019-10-04 | 2021-04-08 | Frank Jaschinski | Oligonucleotide based ex vivo cell therapy |
| CN115176010A (en) | 2020-02-28 | 2022-10-11 | 豪夫迈·罗氏有限公司 | Oligonucleotides for modulating CD73 exon 7 splicing |
| JP2023528071A (en) * | 2020-06-03 | 2023-07-03 | エムヴィ バイオセラピューティクス エスエー | Combination of ATP hydrolase and immune checkpoint modulator, and use thereof |
| KR20230133311A (en) | 2020-12-31 | 2023-09-19 | 세카나 파머씨티컬스 지엠비에이치 엔 씨오. 케이지 | Oligonucleotides that reduce the amount of CD73 mRNA and CD73 protein expression |
| KR20250004779A (en) | 2022-04-13 | 2025-01-08 | 길리애드 사이언시즈, 인코포레이티드 | Combination therapy for treating TROP-2 expressing cancers |
| US20250230168A1 (en) | 2023-12-22 | 2025-07-17 | Gilead Sciences, Inc. | Azaspiro wrn inhibitors |
Family Cites Families (7)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| WO2004079013A1 (en) * | 2003-03-03 | 2004-09-16 | Arizona Board Of Regents On Behalf Of The University Of Arizona | Ecto-5’-nucleotidase (cd73) used in the diagnosis and the treatment of pancreatic cancer |
| WO2005116204A1 (en) * | 2004-05-11 | 2005-12-08 | Rnai Co., Ltd. | Polynucleotide causing rna interfere and method of regulating gene expression with the use of the same |
| US20130123345A1 (en) * | 2010-07-23 | 2013-05-16 | The Ohio State University | Method of treating a viral infection dysfunction by disrupting an adenosine receptor pathway |
| CA2908105C (en) | 2013-03-27 | 2021-07-27 | Isarna Therapeutics Gmbh | Modified tgf-beta2 oligonucleotides |
| GB2538120A (en) * | 2014-11-11 | 2016-11-09 | Medimmune Ltd | Therapeutic combinations comprising anti-CD73 antibodies and uses thereof |
| EP3259288A1 (en) * | 2015-02-20 | 2017-12-27 | Innate Pharma | Cd73 blockade |
| US9828601B2 (en) * | 2015-02-27 | 2017-11-28 | Idera Pharmaceuticals, Inc. | Compositions for inhibiting checkpoint gene expression and uses thereof |
-
2017
- 2017-10-09 KR KR1020197013136A patent/KR20190077390A/en not_active Withdrawn
- 2017-10-09 AU AU2017339581A patent/AU2017339581A1/en not_active Abandoned
- 2017-10-09 CA CA3039077A patent/CA3039077A1/en not_active Abandoned
- 2017-10-09 CN CN201780073579.6A patent/CN110168088A/en active Pending
- 2017-10-09 EP EP17787366.8A patent/EP3523436A1/en not_active Withdrawn
- 2017-10-09 WO PCT/EP2017/075682 patent/WO2018065627A1/en not_active Ceased
- 2017-10-09 JP JP2019540697A patent/JP2019531095A/en active Pending
Also Published As
| Publication number | Publication date |
|---|---|
| EP3523436A1 (en) | 2019-08-14 |
| JP2019531095A (en) | 2019-10-31 |
| WO2018065627A1 (en) | 2018-04-12 |
| CN110168088A (en) | 2019-08-23 |
| CA3039077A1 (en) | 2018-04-12 |
| KR20190077390A (en) | 2019-07-03 |
Similar Documents
| Publication | Publication Date | Title |
|---|---|---|
| AU2017339581A1 (en) | Immunosuppression-reverting oligonucleotides inhibiting the expression of CD73 | |
| US11959083B2 (en) | Immunosuppression-reverting oligonucleotides inhibiting the expression of CD39 | |
| IL294311A (en) | Modified antisense oligonucleotides for monitoring the expression of foxp3 | |
| US20230183708A1 (en) | PD-1-specific antisense oligonucleotide and its use in therapy | |
| US11781136B2 (en) | Oligonucleotide inhibiting the expression of Chop | |
| WO2020011909A1 (en) | Nucleic acid polymers inhibiting the expression of xbp1 | |
| US20240076673A1 (en) | Oligonucleotides reducing the amount of CD73 mRNA and CD73 protein expression | |
| US20200163988A1 (en) | Immunosuppression-Reverting Oligonucleotides Inhibiting the Expression of IDO | |
| US20230067620A1 (en) | Inhibitor of metadherin expression | |
| CA3217457A1 (en) | Multitargeting rna immunotherapy compositions | |
| US20220220485A1 (en) | PD-L1 antisense oligonucleotides for use in tumor treatment | |
| NZ793165A (en) | Immunosuppression-reverting oligonucleotides inhibiting the expression of CD39 | |
| HK40049835A (en) | Inhibitor of metadherin expression | |
| EP3346007A1 (en) | Immunosuppression-reverting oligonucleotides inhibiting the expression of tdo |
Legal Events
| Date | Code | Title | Description |
|---|---|---|---|
| MK1 | Application lapsed section 142(2)(a) - no request for examination in relevant period |