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AU2017202571B2 - Treatment of pluripotent cells - Google Patents

Treatment of pluripotent cells Download PDF

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AU2017202571B2
AU2017202571B2 AU2017202571A AU2017202571A AU2017202571B2 AU 2017202571 B2 AU2017202571 B2 AU 2017202571B2 AU 2017202571 A AU2017202571 A AU 2017202571A AU 2017202571 A AU2017202571 A AU 2017202571A AU 2017202571 B2 AU2017202571 B2 AU 2017202571B2
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Janet E. Davis
Jiajian Liu
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Janssen Biotech Inc
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Abstract

The present invention is directed to methods to treat pluripotent cells, whereby the pluripotent cells can be efficiently expanded in culture and differentiated by treating the pluripotent cells with an inhibitor of GSK-3B enzyme activity.

Description

The present invention is directed to methods to treat pluripotent cells, whereby the pluripotent cells can be efficiently expanded in culture and differentiated by treating the pluripotent cells with an inhibitor of GSK-3B enzyme activity.
2017202571 19 Apr 2017
ABSTRACT
2017202571 19 Apr 2017 [0001] [0001a] [0001b] [0002] [0003] [0004]
TREATMENT OF PLURIPOTENT CELLS
FIELD OF THE INVENTION
The present application is a divisional application of Australian Application No. 2015221570, which is incorporated in its entirety herein by reference.
The present invention is directed to methods to treat pluripotent cells, whereby the pluripotent cells can be efficiently expanded in culture and differentiated by treating the pluripotent cells with an inhibitor of GSK-3B enzyme activity.
BACKGROUND
Any discussion of the prior art throughout the specification should in no way be considered as an admission that such prior art is widely known or forms part of common general knowledge in the field.
Advances in cell-replacement therapy for Type I diabetes mellitus and a shortage of transplantable islets of Langerhans have focused interest on developing sources of insulin-producing cells, or β cells, appropriate for engraftment. One approach is the generation of functional β cells from pluripotent cells, such as, for example, embryonic stem cells.
In vertebrate embryonic development, a pluripotent cell gives rise to a group of cells comprising three germ layers (ectoderm, mesoderm, and endoderm) in a process known as gastrulation. Tissues such as, for example, thyroid, thymus, pancreas, gut, and liver, will develop from the endoderm, via an intermediate stage. The intermediate stage in this process is the formation of definitive endoderm. Definitive endoderm cells express a number of markers, such as, HNF-3 beta, GATA-4, Mixll, CXCR4 and SOX-17.
Formation of the pancreas arises from the differentiation of definitive endoderm into pancreatic endoderm. Cells of the pancreatic endoderm express the pancreatic- duodenal homeobox gene, PDX-1. In the absence
- 1 of PDX-l, the pancreas fails to develop beyond the formation of ventral and dorsal buds. Thus, PDX-l expression marks a critical step in pancreatic organogenesis. The mature pancreas contains, among other cell types,exocrine tissue and endocrine tissue. Exocrine and endocrine tissues arise from the differentiation of pancreatic endoderm.
[0005] The generation of a sufficient amount of cellular material for transplantation requires a source of the cellular material that can be efficiently expanded in culture, and efficiently differentiated into the tissue of interest, for example, functional β cells. -y
2017202571 19 Apr 2017
- 1a2017202571 19 Apr 2017
10006]
10007] |0008| [0009|
10010] |0011|
Current methods to culture human embryonic stem cells are complex; they require the use of exogenous factors, or chemically defined media in order for the cells to proliferate without loosing their pluripotency. Furthermore differentiation of embryonic stem cells often results in a decrease in the cells to expand in culture.
In one example, Cheon et al (BioRcprod DO1;10.1095/biolrcprod. 105.046870, October 19, 2005) disclose a feeder-free, serum-free culture system in which embryonic stem cells are maintained in unconditioned serum replacement (SR) medium supplemented with different growth factors capable of triggering embryonic stem cell self-renewal.
In another example, US20050233446 discloses a defined media useful in culturing stem cells, including undifferentiated primate primordial stem cells. In solution, the media is substantially isotonic as compared to the stem cells being cultured. In a given culture, the particular medium comprises a base medium and an amount of each of bFGF, insulin, and ascorbic acid necessary to support substantially undifferentiated growth of the primordial stem cells.
In another example, W02005086845 discloses a method for maintenance of an undifferentiated stem cell, said method comprising exposing a stem cell to a member of the transforming growth factor-beta (TGFP) family of proteins, a member of the fibroblast growth factor (FGF) family of proteins, or nicotinamide (NIC) in an amount sufficient to maintain the cell in an undifferentiated state for a sufficient amount of time to achieve a desired result.
Inhibitors of glycogen synthase kinase-3 (GSK-3) are known to promote proliferation and expansion of adult stem cells. In one example, Tatcishi et al. (Biochemical and Biophysical Research Communications (2007) 352: 635) show that inhibition of GSK-3 enhances growth and survival of human cardiac stem cells (hCSCs) recovered from the neonatal or adult human heart and having mesenchymal features.
For example, Rulifson et al (PNAS 144, 6247-6252, (2007)) states “Wnt signaling stimulates islet β cell proliferation.
. ? _
2017202571 19 Apr 2017 |00121
10013] |0014]
10015]
100161
100171 [00181 |0019]
In another example, W020070I6485 reports that addition of GSK-3 inhibitors to the culture of non-embryorric stem cells, including multipotent adult progenitor cells, leads to the maintenance of a pluripotent phenotype during expansion and results in a more robust differentiation response.
In another example, US2006030042 uses a method of inhibiting GSK-3, either by addition of Wnt or a small molecule inhibitor of GSK-3 enzyme activity, to maintain embryonic stem cells without the use of a feeder cell layer.
In another example, W02006026473 reports the addition of a GSK-3B inhibitor, to stabiiize pluripotent cells through transcriptional activation of c-myc and Stabilization of c-myc protein.
In another example, W02006100490 reports the use of a stem cell culture medium containing a GSK-3 inhibitor and a gp.130 agonist to maintain a self-renewing population of pluripotent stem cells, including mouse or human embryonic stem cells.
In another example, Sato etal. (Nature Medicine (2004) 10:55-63) show that inhibition of GSK-3 with a specific pharmacological compound can maintain the undifferentiated phenotype of embryonic stem cells and sustain expression of pluripotent state-specific transcription factors such as Oct-3/4, Rex-I, and Nanog.
In another example, Maurer etal (Journal of Proteome Research (2007) 6:1198-1208) show that adult, neuronal stem cells treated with a GSK-3 inhibitor show enhanced neuronal differentiation, specifically by promoting transcription of β-catenin target genes and decreasing apoptosis.
In another example, Gregory et at (Annals of the New York Academy of Sciences (2005) 1049:97-106) report that inhibitors ofGSK-3B enhance in vitro osteogenesis.
In another example, Feng et ai (Biochemical and Biophysical Research CommuncationS (2004) 324:1333-1339) show that hematopoietic differentiation from embryonic stem cells is associated with down-regulation of the Wnt/p-catenin pathway, where Wnt is a natural inhibitor of GSK3.
-3-42017202571 20 Apr 2017 [0020] Therefore, there still remains a significant need to develop methods for treating pluripotent stem cell such that they can be expanded to address the current clinical needs, while retaining the potential to differentiate into pancreatic endocrine cells, pancreatic hormone expressing cells, or pancreatic hormone secreting cells.
[0020a] Any discussion of the prior art throughout the specification should in no way be considered as an admission that such prior art is widely known or forms part of common general knowledge in the field.
SUMMARY [0020b] According to a first aspect, the present invention provides a method for differentiating pluripotent stem cells into definitive endoderm cells comprising treating the pluripotent stem cells with medium supplemented with a compound of formula (III)
Figure AU2017202571B2_D0001
wherein the compound is selected from the group consisting of:
a. 6-[[2-[[4-(2,4-dichlorophenyl)-5-(4-methyl-1H-imidazol-2-yl)-2pyrimidinyl]amino]ethyl]amino]-3-pyridinecarbonitrile;
b. 3-[1-(3-hydroxy-3-methyl-butyl)-1H-indazol-3-yl]-4-(1-pyridin-3-yl-1H-indol-3-yl)-pyrrole2,5-dione;
c. 3-[1-[3-[(2-hydroxyethyl)methylamino]propyl]-1H-indazol-3-yl]-4-[1-(3-pyridinyl)-1 H-indol3-yl]-1 H-pyrrole-2,5-dione;
d. 14-ethyl-6,7,9,10,13,14,15,16-octahydro-12H,23H-5,26:17,22dimethenodibenzo[k,q]pyrrolo[3,4-n][1,4,7,10,19]dioxatriazacycloheneicosine-23,25(24H)dione;
e. 14-(2-thienylmethyl)-6,7,9,10,13,14,15,16-octahydro-12H,23H-5,26:17,22di(metheno)dibenzo[k,q]pyrrolo[3,4-n][1,4,7,10,19]dioxatriazacyclohenicosine-23,25(24H)dione; and
f. 14-(1-naphthylmethyl)-6,7,9,10,13,14,15,16-octahydro-12H,231-1-5,26:17,22di(metheno)dibenzo[k,q]pyrrolo[3,4-n][1,4,7,10,19]dioxatriazacyclohenicosine-23,25(24H)dione.
2017202571 20 Apr 2017
- 4a [0020c] According to a second aspect, the present invention provides a method of differentiating pluripotent stem cells into pancreatic endoderm or pancreatic endocrine comprising differentiating pluripotent stem cells into definitive endoderm cells using the method of the first aspect and differentiating the definitive endoderm cells into pancreatic endoderm or pancreatic endocrine cells.
[0020d] According to a third aspect, the present invention provides definitive endoderm cells when produced by the method of the first aspect.
[0020e] According to a fourth aspect, the present invention provides pancreatic endoderm or pancreatic endocrine when produced by the method of the second aspect.
[0020q Unless the context clearly requires otherwise, throughout the description and the claims, the words “comprise”, “comprising”, and the like are to be construed in an inclusive sense as opposed to an exclusive or exhaustive sense; that is to say, in the sense of “including, but not limited to”.
[0021] The present invention provides a method to expand and differentiate pluripotent cells by treating the pluripotent cells with an inhibitor of GSK-3B enzyme activity.
[0022] In one embodiment, the present invention provides a method to expand and differentiate pluripotent cells, comprising the steps of:
a. culturing pluripotent cells, and
b. treating the pluripotent cells with an inhibitor of GSK-3B enzyme activity.
[0023] In one embodiment, the pluripotent cells are differentiated into cells expressing markers characteristic of the definitive endoderm lineage.
[0024] The pluripotent cells may be human embryonic stem cells, or they may be cells expressing pluripotency markers derived from human embryonic stem cells, according to the methods disclosed in 60/913475.
[0025] In one embodiment, the inhibitor of GSK-3B enzyme activity is a compound of the
Formula (I):
-4b2017202571 20 Apr 2017
Figure AU2017202571B2_D0002
Formula (I)
Figure AU2017202571B2_D0003
2017202571 19 Apr 2017 |00261
In one embodiment, the inhibitor of GSK-3B enzyme activity is a compound of the Formula (II):
Figure AU2017202571B2_D0004
-5|0027) In one embodiment, the inhibitor of GSK.-3B enzyme activity isa compound of the
Formula (III ):
2017202571 19 Apr 2017
Figure AU2017202571B2_D0005
BRIEF DESCRIPTION OF THE FIGURES
10028] Figure 1 shows the effect of a range of concentrations of the compound JNJ 17189731 on cell number, as determined by the number of nuclei observed (Panel A) and Sox-17 expression, as determined by intensity of immunofluoresccnt staining (Panel B). Results were obtained from cells of the human embryonic stem cell line Η1 (white bars), or cells of the human embryonic stem cell line H9 (black bars), using the ΓΝ Cell Analyzer 1000 (GE Healthcare).
100291 Figure 2 shows the effect of a range of concentrations of the compound JNJ 17163796 on cell number, as determined by the number of nuclei observed (Panel A) and Sox-17 expression, as determined by intensity of immunofluoresccnt staining (Panel B). Results were obtained from cells of the human embryonic stem cell line Η1 (white bars), or cells of the human embryonic stem cell line H9 (black bars), using the IN Cell Analyzer 1000 (GE Healthcare).
|0030| Figure 3 shows the effect of a range of concentrations of the compound JNJ 17223375 on cell number, as determined by the number of nuclei observed (Panel A) and Sox-17
-62017202571 19 Apr 2017 |003lJ |0032| [0033] |0034| expression, as determined by intensity of immunofluorescent staining (Panel B). Results were obtained from cells of the human embryonic stem cell line Hl (white bars), or cells of the human embryonic stem cell line H9 (black bars), using the IN Cell Analyzer 1000 (GE Healthcare).
Figure 4 shows the effect of a range of concentrations of the compound JNJ 18157698 on cell number, as determined by the number of nuclei observed (Panel A) and Sox-17 expression, as determined by intensity of immunofluorescent staining (Panel B). Results were obtained from cells of the human embryonic stem cell line Hl (white bars), or cells of the human embryonic stem cell line H9 (black bars), using the IN Cell Analyzer 1000 (GE Healthcare),
Figure 5 shows the effect of a range of concentrations of the compound JNJ 26158015 on cell number, as determined by the number of nuclei observed (Panel A) and Sox-17 expression, as determined by intensity of immunofluorescent staining (Panel B), Results were obtained from cells of the human embryonic stem cell line Η1 (white bars), or cells of the human embryonic stem cell line H9 (black bars), using the IN Cell Analyzer 1000 (GE Healthcare),
Figure 6 shows the effect of a range of concentrations of the compound JNJ 26483197 on cell number, as determined by the number of nuclei observed (Panel A) and Sox-17 expression, as determined by intensity of immunofluorescent staining (Panel B). Results were obtained from cells of the human embryonic stem cell line H] (white bars), or cells of the human embryonic stem cell line H9 (black bars), using the IN Cell Analyzer 1000 (GE Healthcare),
Figure 7 shows the effect of a range of concentrations of the compound JNJ 26483249 on cell number, as determined by the number of nuclei observed (Panel A) and Sox-17 expression, as determined by intensity of immunofluorescent staining (Panel B), Results were obtained from cells of the human embryonic stem cell line Hl (white bars), or cells of the human embryonic stem cell line H9 (black bars), using the IN Cell Analyzer 1000 (GE Healthcare).
-72017202571 19 Apr 2017
1003?!
10036| |00371 |0038| |00391
10040] [0041|
Figure 8 shows the effect of a range of concentrations of the compound JNJ 10220067 on cell number, as determined by the number of nuclei observed (Panel A) and Sox-17 expression, as determined by intensity of immunofluorcscent staining (Panel B). Results were obtained from cells of the human embryonic stem cell line Hl (white bars), or cells of the human embryonic stem cell line H9 (black bars), using the IN Cell Analyzer 1000 (GE Healthcare),
Figure 9 shows the expression of CXCR4 on the surface of cells, as determined by immunofluorescent staining and flow cytometric analysis, on cells heated with the compounds shown, according to the methods described in Example 8.
Figure 10 shows the expression ofCXCR4 (Panel A), HNF-3 beta (Panel B), and Sox-17 (Panel C), as determined by real-time PCR, in cells treated with the compounds shown, according to the methods described in Example 8.
Figure 11 shows the effect of a range of concentrations of the compounds shown on cell number, as determined by the number of nuclei observed (Panel A) and Pdx-1 expression, as determined by intensity of immunofluorescent staining (Panel B), using the IN Cell Analyzer 1000 (GE Healthcare). Cells were treated according to the methods described in Example 9.
Figure 12 shows the effect of a range of concentrations of the compounds shown on Pdx1 expression (white bars) and HNF-6 (black bars), as determined by real-time PCR. Cells were treated according to the methods described in Example 9.
Figure 13 shows the effect of a range of concentrations of the compounds shown on cell number, as determined by the number of nuclei observed (Panel A) and insulin expression, as determined by intensity of immunofluorescent staining (Panel B), using the IN Cell Analyzer 1000 (GE Healthcare), Cells were treated according to the methods described in Example 10.
Figure 14 shows effect of a range of concentrations of the compounds shown on Pdx-1 expression (white bars) and insulin (black bars), as determined by real-time PCR. Cells were treated according to the methods described in Example 10.
-8Figure 15 shows the effect of a range of concentrations of the compounds shown on cell number, as determined by the number of nuclei observed (Panel A) and insulin expression, as determined by intensity of immunofluorescent staining (Panel B), using the IN Cell Analyzer 1000 (GE Healthcare). Ceils were treated according to the methods described in Example 11.
2017202571 19 Apr 2017 |00421
I0043I |0044|
DETAILED DESCRIPTION
For clarity of disclosure, and not by way of limitation, the detailed description of the invention is divided into the following subsections that describe or illustrate certain features, embodiments, or applications of the present invention.
Definitions
Stem cells are undifferentiated cells defined by their ability at the single cell level to both self-rencw and differentiate to produce progeny cells, including self-renewing progenitors, non-renewing progenitors, and terminally differentiated cells. Stem cells arc also characterized by their ability to differentiate in vitro into functional cells of various cell lineages from multiple germ layers (endoderm, mesoderm and ectoderm), as well as to give rise to tissues of multiple germ layers following transplantation and to contribute substantially to most, if not all, tissues following injection into blastocysts.
Stem cells are classified by their developmental potential as: (1) totipotent, meaning able to give rise to all embryonic and extraembryonic cell types; (2) pluripotent, meaning able to give rise to all embryonic cell types; (3) multipotent, meaning able to give rise to a subset of cell lineages, but all within a particular tissue, organ, or physiological system (for example, hematopoietic stem cells (HSC) can produce progeny that include HSC (self- renewal), blood cell restricted oligopotent progenitors and all cell types and elements (e.g., platelets) that are normal components of the blood); (4) oligopotent, meaning able to give rise to a more restricted subset of cell lineages than multipotent stem cells; and (5) unipotent, meaning able to give rise to a single cell lineage (e.g., spermatogenic stem cells).
-92017202571 19 Apr 2017
100451 [00461 |0047| [00481
Differentiation is the process by which an unspecialized (uncommitted) or less specialized cell acquires the features of a specialized cell such as, for example, a nerve cel! or a muscle cell. A differentiated or differentiation-induced cell is one that has taken on a more specialized {committed) position within the lineage of a cell. The term “committed”, when applied to the process of differentiation, refers to a cell that has proceeded in the differentiation pathway to a point where, under normal circumstances, it will continue to differentiate into a specific cell type or subset of cell types, and cannot, under normal circumstances, differentiate into a different cell type or revert to a less differentiated cell type. De-differentiation refers to the process by which a cell reverts to a less specialized (or committed) position within the lineage of a cell. As used herein, the lineage of a cell defines the heredity of the cell, i.e., which cells it came from and what cells it can give rise to. The lineage of a cell places the cell within a hereditary scheme of development and differentiation. A lineage-specific marker refers to a characteristic specifically associated with the phenotype of cells of a lineage of interest and can be used to assess the differentiation of an uncommitted cell to the lineage of interest.
β-cell lineage refer to cells with positive gene expression for the transcription factor PDX-1 and at least one of the following transcription factors: NGN-3, Nkx2.2< Nkx6.1, NeuroD, Isl-1, HNF-3 beta, MAFA, Pax4, and Pax6. Cells expressing markers characteristic of the β cell lineage include β cells.
“Cells expressing markers characteristic of the definitive endoderm lineage” as used herein refer to cells expressing at least one of the following markers: SOX-17, GATA-4, HNF-3 beta, GSC, Cerl, Nodal, FGF8, Brachyury, Mix-like homeobox protein, FGF4 CD48, eomesodermin (EOMES), DKK4, FGF17, GATA-6, CXCR4, C-Kit, CD99, or OTX2. Cells expressing markers characteristic of the definitive endoderm lineage include primitive streak precursor cells, primitive streak cells, mesendoderm cells and definitive endoderm ceils.
“Cells expressing markers characteristic of the pancreatic endoderm lineage” as used herein refer to cells expressing at least one of the following markers: PDX-1, HNF- 102017202571 19 Apr 2017
10049) |0050)
100511 [0052| [0053) |0054|
Ibeta, PTF-1 alpha, HNF-6, or HB9. Cells expressing markers characteristic of the pancreatic endoderm lineage include pancreatic endoderm cells.
“Cells.expressing markers characteristic of the pancreatic endocrine lineage” as used herein refer to cells expressing at least one of the following markers: NGN-3, NeuroD, Islet-1, PDX-1, NKX6.1, Pax-4, Ngn-3, or PTF-t alpha. Cells expressing markers characteristic of the pancreatic endocrine lineage include pancreatic endocrine cells, pancreatic hormone expressing cells, and pancreatic hormone secreting cells, and cells of the β-celJ lineage.
“Definitive endoderm” as used herein refers to cells which bear the characteristics of cells arising from the epiblast during gastrulation and which form the gastrointestinal tract and its derivatives. Definitive endoderm cells express the following markers: HNF3 beta, GATA-4, SOX-17, Cerberus, OTX2, goosecoid, C-K.it, CD99, and Mixl 1, “Extraembryonic endoderm as used herein refers to a population of cells expressing at least one of the following markers: SOX-7, AFP, and SPARC.
Markers as used herein, are nucleic acid or polypeptide molecules that are differentially expressed in a cell of interest. In this context, differential expression means an increased level for a positive marker and a decreased level for a negative marker. The detectable level of the marker nucleic acid or polypeptide is sufficiently higher or lower in the cells of interest compared to other cells, such that the cell of interest can be identified and distinguished from other cells using any of a variety of methods known in the art, “Mescndodcrm cell” as used herein refers to a cell expressing at least one of the following markers: CD48, eomesodermin (EOMES), SOX-17, DKK4, HNF-3 beta,
GSC, FGF17, GATA-6.
“Pancreatic endocrine cell”, or “pancreatic hormone expressing cell” as used herein refers to a cell capable of expressing at least one of the following hormones: insulin, glucagon, somatostatin, and pancreatic polypeptide.
- 11 2017202571 19 Apr 2017
100551 |0056| [00571 |00581 |0059[
100601
100611 “Pancreatic hormone secreting cell” as used herein refers to a cell capable of secreting at least one of the following hormones: insulin, glucagon, somatostatin, and pancreatic polypeptide.
“Pre-primitive streak cell” as used herein refers to a cell expressing at least one of the following markers: Nodal, or FGF8 “Primitive streak cell as used herein refers to a cell expressing at least one of the following markers: Brachyury, Mix-like homeobox protein, or FGF4.
In one embodiment, the present invention provides a method for the expansion and differentiation of pluripotent cells comprising treating the pluripotent cells with an inhibitor of GSK-3B enzyme activity.
In one embodiment, the present invention provides a method to expand and differentiate pluripotent cells, comprising the steps of:
c. Culturing pluripotent cells, and
d. Treating the pluripotent cells with an inhibitor of GSK-3B enzyme activity.
In one embodiment, the pluripotent cells are differentiated into cells expressing markers characteristic of the definitive endoderm lineage.
Markers characteristic of the definitive endoderm lineage are selected from the group consisting of SOX17, GATA4, Hnf-3beta, GSC, Cerl, Nodal, FGF8, Brachyury, Mixlike homeobox protein, FGF4 CD48, eomesodermin (EOMES), DKK4, FGF17, GATA6, CXCR4, C-Kit, CD99, and OTX2. Contemplated in the present invention is a cell, derived from a pluripotent cell that expresses at least one of the markers characteristic of the definitive endoderm lineage. In one aspect of the present invention, a cell expressing markers characteristic of the definitive endoderm lineage is a primitive streak precursor ceil. In an alternate aspect, a cell expressing markers characteristic of the definitive endoderm lineage is a mesendoderm cell. In an alternate aspect, a cell expressing markers characteristic of the definitive endoderm lineage is a definitive endoderm cell.
- 122017202571 19 Apr 2017
100621
10063]
10064|
The pluripotent cells may be treated with the inhibitor of GSK.-3B enzyme activity for about one to about 72 hours. Alternatively, the pluripotent cells may be treated with the inhibitor of GSK.-3B enzyme activity for about 12 to about 48 hours. Alternatively., the pluripotent cells may be treated with the inhibitor of GSK-3B enzyme activity for about hours.
In one embodiment, the inhibitor of GSK-3B enzyme activity is used at a concentration of about lOOnM to about ΙΟΟμΜ. Alternatively, the inhibitor of GSK-3B enzyme activity is used at a concentration of about 1 μΜ to about 10μΜ. Alternatively, the inhibitor of GSK.-3B enzyme activity is used at a concentration of about 10μΜ,
Compounds suitable for use in the methods of the present invention
In one embodiment, the inhibitor of GSK.-3B enzyme activity is a compound of the Formula fi):
Figure AU2017202571B2_D0006
Formula (J) [0065) |00661
10067)
I0068J wherein;
Ri is phenyl, substituted phenyl wherein the phenyl substituents are selected from the group consisting of Cj^alkyl, halogen, nitro, trifluoromethyl and nitrile, of pyrimidinyl;
R2 is phenyl, substituted phenyl wherein the phenyl substituents are selected from the group consisting of Cj^alkyl, halogen, nitro, triffuoromethyl and nitrile, or pyrimidinyl which is optionally Chalky 1 substituted, and at least one of Ri and R2 is pyrimidinyl;
Ri is hydrogen, 2-(trimethyl.silyl)etlioxymethyl, Ci.5alkoxycarbonyl, aryloxycarbonyl, aryICi.salkyloxycarbonyl, arylCi^alkyl, substituted arylCi^alkyl wherein the one or more
- 13 aryl substituents are independently selected from the group consisting of Ci/alkyl,
C|/alkoxy, halogen, amino, Cι/alkylamino, and diCi/alkylamino, phthalimidoC i.salkyl, aminoCi/alkyl, di ami noC,/alkyl, succinimidoCi/alkyl, Ci/alkylcarbonyl, arylcarbonyl,
Ci/alkylcarbonylCi/alkyl and aryloxycarbonylCi/alkyl,
2017202571 19 Apr 2017 |0069| EL, is /OR5
10070) |0071|
A is vinylene, ethynylene or
Figure AU2017202571B2_D0007
Figure AU2017202571B2_D0008
R5 is .selected from the group consisting of hydrogen, Cj/alkyl, phenyl and phenylC r/alkyl;
[0072| q is 0-9;
[0073] X is selected from the group consisting of hydrogen, hydroxy, vinyl, substituted vinyl wherein one or more vinyl substituents are each selected from the group consisting of fluorine, bromine, chlorine and iodine, ethynyl, substituted ethynyl wherein the ethynyl substituents are selected from the group consisting of fluorine, bromine chlorine and iodine, Cj/alkyl, substituted Cj/alkyl wherein the one or more alkyl substituents are each selected from the group consisting of C i/alkoxy, trihaloalkyl, phthalimido and amino, Cri/cycloalkyl, C ι/alkoxy, substituted C|/alkoxy wherein the alkyl substituents are selected from the group consisting of phthalimido and amino, phthalfrnidooxy, phenoxy, substituted phenoxy wherein the one or more phenyl substituents are each selected from the group consisting of Cj/alkyl, halogen and Cj/alkoxy, phenyl, substituted phenyl wherein the one or more phenyl substituents are each selected from the group consisting of Cj/alkyl, halogen and Cj/alkoxy, arylCi/alkyl, substituted arylCj/alkyl wherein the one or more atyl substituents are each selected from the group consisting of Cj/alkyl, halogen and Ci/alkoxy, aryloxyCi/alkylamino, Ct/alkylamino, diC|/alkylamino, nitrile, oxime, benxyloxyimino, C i/alkyloxyimino, phthalimido, succinimido, Ci/alkylcarbonytoxy, phenylcarbonyloxy, substituted phenylcarbonyloxy wherein the one or more phenyl substituents are each selected from the group consisting of Cj/alkyl,
- 142017202571 19 Apr 2017
10074|
10075] |0076]
10077|
10078] [00791 |0074] |0075] |0076]
10077|
10078] [00791 halogen and Ci-jalkoxy, phenylCj-salkylcarbonyloxy wherein the one or more phenyl substituents are each selected from the group consisting of Ci-salkyl, halogen and
Cj.salkoxy, aminocarbonyloxy, Cj.salkylaminocarbonylcixy, diC|.5alkylaminocarbonyloxy, Ci-jalkoxycarbonyloxy, substituted Cj^alkoxycarbonyloxy wherein the one or more alkyl substituents are each selected from the group consisting of methyl, ethyl, isopropyl and hexyl, phenoxycarbonyloxy, substituted phenoxycarbonyloxy wherein the one or more phenyl substituents are each selected from the group consisting ofCi-salkyl, Ci-jalkoxy and halogen, Chalky Ithio, substituted ChalkyIthio wherein the alkyl substituents are selected from the group consisting of hydroxy and phthalimido, Cualkylsulfonyl, phenylsulfonyl, substituted phenylsulfonyl wherein the one or more phenyl substituents are each selected from the group consisting of bromine, fluorine, chloride, Cj.galkoxy and trifluoromethyl; with the proviso that if A
Ν' is , q is 0 and X is H, then Ri may not be 2-(trimethylsilyl)cthoxymethyl; and pharmaceutically acceptable salts thereof.
An example of the invention includes a compound of Formula (I) wherein R[ is substituted phenyl and R? is pyrimidin-3-yh
An example of the invention includes a compound of Formula (I) wherein R| is
4-fluorophenyl.
An example of the invention includes a compound of Formula (1) wherein Ri is hydrogen, arylCualkyl, or substituted arylCi-jalkyl.
An example of the invention includes a compound of Formula (I) wherein R < is hydrogen or phenylCi-jalkyl.
An example of the invention includes a compound of Formula (I) wherein A is ethynylene and q is 0-5.
An example of the invention includes a compound of Formula (1) wherein X is succinimide, hydroxy, methyl, phenyl, Ci->alkylsulfonyl, C?-scycloalkyl,
- 152017202571 19 Apr 2017
Ci-salkylcarbonyloxy, Ci-jalkoxy, phenylcarbonyloxy, Ci-jalkylamino, diCj^alkylamino or nitrile.
10080) Compounds of Formula (1) are disclosed in commonly assigned United States Patent
Number 6,214,830, the complete disclosure of which is herein incorporated hy reference.
[0081) An example of the invention includes a compound of Formula (I) wherein the compound is selected from the group consisting of;
Compound Name
5{4)-(4-fluorophenyl)-4(5>(4-pyridy [)imidazole,
4-(4-fIuoropheny1)-l-(3-phenylpropyl)-5-(4-pyridyl)iniidazole,
5-(4-fluorophenyl)-1 -(3-pheny Ipropy l)-4-(4-pyridyl)imidazole,
4-(4-fluorophenyl)-2-iodo-1 -(3-phenyIpropy l}-5-(4-pyridyl)imidazolc.
4-{4-fluorophenyl)-2-{4-bydroxybutyn-1 -yl)-1 -(3-pheny Ipropy I )-5-(4pyridyl)imidazole, ή 4-(4-fluorOpheny])-5-(4-pyridyl)-l-[2-(trimethylsilyl)ethoxymethyl]i midazole,
5-(4-fluorophenyl)-4-(4-pyridyl)-U[2-(trimethylsilyl)ethoxymethyl]imidazole,
5-(4-fluoropheny l)-2-iodo-4-(4-pyridyl)-1 -[2(tri methy lsilyl)ethoxyme thy l]-imidazo le,
5-(4-fluorophenyl)-4-(4-pyridyl)-2-(trimcthylsilyr)ethmyl-1 -[2(trimethylsilyl)ethoxymethy]]-imidazolc(
2-{2-chlorovinyl)-5-(4-fluorophenyl)-4-(4-pyrid]yl)-imidazole,
- 162017202571 19 Apr 2017
Compound Name
11 5-(4-ftuorophenyl )-4-(4-pyridyl)-l-[2-(trimethyl sily l)ethoxymethy 1] - imidazoIc-2-cafboxaldehyde,
12 2-[2,2-dibromoethyIene-l-yl]-5-(4-fIuorophenyl}-4-(4-pyridyl)-l-[2- (trimethylsilyl)ethoxymethyl]-tmidazole-2-carboxaldehyde,
13 5{4)-(4-fluorophenyl)-2-(3-hydroxy-3-phenyl-propyn-1 -y 1)-4(5 )-(4- pyridyl)imidazole,
14 5-(4-fluorophenyl )-4-( 4-pyri dyl)-1 -[2-( trimethy Ssily 1 )ethoxymethy 1J-2- oximino imidazole,
15 5-(4-fluorophenyl)-4-(4-pyridyl)-2-imidazole oxime.
16 2-(5-chIoropentyn-l“yl)-4-(4-fluarophenyJ)-l-(3-phenylpropy])-5“(4- pyridyl)imidazole,
17 4-(4-fluorophenyl)-2-(4-N-phenylcarbamoytoxybutyn-l -yl)l -(3- phenylpropyl)-5-(4-pyridyl)imidazole.
17 2-(4-chtorobutyn-l-yl)-4-(4-fluorophenyi)-l-(3-phenylpropyl)-5-(4- pyridyl)imidazole, and
18 2-i4-dimethylaminobutyn-1 -yl)-4-(4- fluorophenyl)-1 -(3-phenylpropyl)- 5-(4-pyridy])imidazole.
|00821 An example of the invention includes a compound of Formula (1) wherein the compound is Compound 5 of the Formula:
- 172017202571 19 Apr 2017
Figure AU2017202571B2_D0009
|0083] 1 π one embodiment, the inhibitor of GSK-3B enzyme activity is a compound of the
Formula (II):
Figure AU2017202571B2_D0010
[0084] Wherein:
100851 R is selected from the group consisting of Ra, -Ci-8alkyl-R.n, -Cj-salkenyl-Ru, -Cj-salkynyl-Ra and cyano;
[0086] Ra is selected from the group consisting of cycloalkyl, heterocyclyl, aryl and heteroaryl;
- 182017202571 19 Apr 2017
10087) R1 is selected from the group consisting of hydrogen, -Cj-salkyl-R5, -C2-?alkenyl-R\ -C2_salkynyl-R5, -C(O)-(C,:S)alkyl-R9, -C(O)-aryl-Rs, -C(O)-O-(Ch8)alkyl-R9, -C(O)-O-aryl-Rs, -C(O)-NH(C^alkyl-R9), -C(O)-NH(aryl-R8), -C(O)-N(Cj.8alkyl-R9)2, -SO2“(Ci.s)alkyl-R9, -SOj-aryl-Rs, -cycloa!kyI-Rfi, -hcterocyclyl-R0, -aryl-Rfi and -hetcroaryl-R6; wherein heterocyclyl and heteroaryl are attached to the azaindole nitrogen atom in the one position via a heterocyclyl or heteroaryl ring carbon atom;
)0088) R5 is 1 to 2 substituents independently selected from the group consisting of hydrogen, -O-(C,.8)alkyl, -O-(C,.8)aLkyl-OH, -0-((2,.aialkyl-O-fC^alkyl, -O-(Ci.8)alkyl-NH2, -O-(Ci.8)alkyl-NH(Ci-Salkyl), -O-(C,.8)alkyl-N(Ci^alkyl)2, -O-(C,.8)alkyl-S-(Ci-8)alkyl, -O-iC^alkyl-SOHCi^alkyl, -O-(Ci.8)alkyt-SO2-NH2i
-O-(C,.8)alkyl-SO3-NHCCi.salkyl), -O-(Cus)alkyl-SO2-N(C,.8alkyl)2, -O-C(O)H, -O-C(O)-(C|-8)alkyl, -O-C(O)-NH2, -O-C(O)-NH(Cualkyf)„ -O-C(O)-N(C, salkyl)2, -O-(C].8)alkyl-C(O)H, -O-(C!-8)a]kyI-C(O)-(Ci.B)alkyl, -O-(C,.8)alkyI-CO2H, -O-(Ci^)alkyl-C(O)-O-(C,.8)alkyl, -O-(C ,.8)alkyl-C(O)-NH2,
-O-(C1_s)alkyl-C(0)-NH(C1.salkyl), -O-iCL.^alkyl-CfOJ-NfCt-salkylh, -C(O)H, -C(O)-(C,.s)alkyl, -CO2H, -C(O)-O-(C,.8)alkyl, -C(0)-NH2, -C(NH)-NHZ, -C(O)-NH(Ci_8alkyl), -C(O)-N(C|.8alkyl)2, -SH, -S-(C,.8)alkyl, -S-{C|.s)alkyl-S-(Ci,R)alkyl, -S-(C^)alkyl-O-(C,,8)alkyl,
-S-iCj-sJalkyl-O-iCuiJalkyl-OH’-S-(C1.8)alkyt-O-(Ci,8)alkyl-NH2, -S-(Ci.8)alkyl-O-(Ci^)alkyl-NH(Ci.salkyl), -S-tChsjalkyl-O-CCi^alkyl-NfChsalkylE -S-(C|.s)alkyl-NH(Ci-salkyl), -SO2-(C,.8)alkyl, -SO2-NH2, -SO2-NH(Ci-8alkyl), -SO2-N(C|-8alkyl)2, -N-R7, cyano, (halo)ro, hydroxy, nitro, Oxo, -cycloalkyl-R6, -heterocyclyl-R6, -ary l-R6 and -heteroaryl-R6;
10089) R6 is 1 to 4 substituents attached to a carbon or nitrogen atom independently selected from the group consisting of hydrogen, -Ci_8alkyl, -C^salkenyl. -C2.8alkynyl, -C(O)H, -(2(0)-((2 i-s)a!kyl, -CO2H, -C(O)-0-(C1B)alkyl, -C(0)-NH2, -<2(ΝΗ)-ΝΗ2,
-C(O>NH(C,.«alkyl), -C(O)-N(C,_R)alkyl)2, -SO2-(C,.8)alkyl, -SO2-NH2, -SOrNH(C,.8alkyl)s -SO.2-N(C,.8alkyI)2, -(Chalky 1-N-R7, -(Cf.B)alkyl-(haJo)i.j, -(C|-g)a!kyl-OH, -aryl-R8, -(Cj.8)alkyl-aryl-R8 and -(Ci.B)atkyl-heteroaryl-Rs; with the proviso that, when Rfi is attached to a carbon atom, R6 is further selected from the group
- 192017202571 19 Apr 2017 consisting of -C^alkoxy, -(Ci^)alkoxy-(halo)|.j, -SH, -S-(Ci-s)alkyl, -N-R7, cyano, halo, hydroxy, nitro, oxo and -heteroaryl-R8;
100901 R7 is 2 substituents independently selected from the group consisting of hydrogen,
-Chalky!, -CXalkcnyl, -CXalkynyl, -(Ci.s)alkyl-OH, -(Ci.s)alkyl-O-(Ci.s)alkyl, -(C|.s)alkyl-NH2,-(C|^)aikyl-NH(Ci_salkyl), -(C^alkyl-NiCEsalkylh, -(C^)alkyl-S-(C,.s)alkyl, -C(O)H, -C(O)-(C,^)alkyI, -C(O)-O-(C^)alkyl, -C(O)-NH2, -C(O)-NH(CuSalkyl), -C(O)-N(Ci.salkyl)2, -SOHCrsJalkyl, -SO2-NH2, -SOz-NH(Ci-salkyl), -SO2-N(Cf_8alky[)2, -C(N)-NH2l -cycloalkyl-R8, -{Ci-sjalkyl-heterocyclyl-R8, -aryl-R8, -(Cufialkyl-aryl-R8 and -(Ci-g)aikyl-heteroaryl-R8;
100911 Rs is 1 to 4 substituents attached to a carbon or nitrogen atom independently selected from the group consisting of hydrogen, -Ci-galkyl, -(C].s)alkyl-(halo)i_3 and -{C|.s)alkyl-OH; with the proviso that, when Ra is attached to a carbon atom, R8 is further selected from the group consisting of -Cj.salkoxy, -NH.2, -NH(Cj,8alkyl), -N(C|.salkyl)2, cyano, halo, -(Ct 8)aikoxy-(halo)i.2, hydroxy and nitro;
[00921 is I to 2 substituents independently selected from the group consisting of hydrogen,
-Ci-8alkoxy, -NH2, -NHfCi-salkyl), -N(Ci-8alkyl)2, cyano, (haloJi.j, hydroxy and nitro;
100931 R7 is one substituent attached to a carbon or nitrogen atom selected from the group consisting of hydrogen, -Ci-galkyl-R3, -C2_salkenyl-R5, -C2.8alkynyl-R5, -C(0)H, -C(O)-(C|4i)alkyl-R9, -C(O)-NH2, -CO-NHfCXalkyl-R9), -C(O)-N(C,.aalkyl-R9)2, -C(O)-NH( aryl-R7), -C(0)-cycloalkyl-Rs, -C(O)-heterocyclyl-R\ -C(O)-aryl-R\ -CfOI-heteroaryl-R7, -CO2H, -QOJ-O-CCu^alkyt-R9, -C(O)-O-aryI-R8, -SO2-(C,.s)alkyl-R9, -SO2-aryl-R's, -cycloalkyl-R6, -aryl-R6 and -(C,.s)a1kyl-N-R7; with the proviso that, when R2 is attached to a carbon atom, R2 is further selected from the group consisting of -Ci-salkoxy-R5, -N-R7, cyano, halogen, hydroxy, nitro, oxo, -heterocyclyl-R6 and -heteroaryl-R6;
[0094] R3 is 1 to 3 substituents attached to a carbon atom independently selected from the group consisting of hydrogen, -Ci-galkyl-R19, -CEgalkenyl-R1, -C2-salkynyl-R10, -Crsalkoxy-R10, -C(O)H, -C(O)-(Cw)aIkyl-R9, -C(O)-NH2, -C(O)-NH(C|-8alkyl-R9),
- 20-GOVNOAsalkyl-R9);!, -C(0)-cycIoalkyl-Rs, -C(O)-heterocyclyl-R8, -C(O)-aryl-Rs,
-C(O)-heteroaryl-RK, -C(NH)-NH2, -CO2H, -C(O)-O-(CM)alkyl-R9, -C(O)-O-aryl-R\
-SO2-(C|.a)alkyl-R9, -SO2-aiyl-Ra, -N-R7, cyano. halogen, hydroxy, nitro. -cycloalkyl-Rs,
-heterocyclyl-R8, -aryl-R8 and -heteraaryl-R8;
2017202571 19 Apr 2017 |0095] |0096| [00971
I0098I (01001 |0101I [01021
R4 is I to 4 substituents attached to a carbon atom independently selected from the group consisting of hydrogen, -CYalkyl-R10, -C2_nalkenyl-R10, -CYalkynyl-R10, -Ci^alkoxy-R10, -C(O)H, -C(O)-(CM)alkyl-R9, -C(O)-NH2, -C(O)-NH(Cl.salkyI-R9), -C(O)-N(Ci.salkyl-R9)2, -C(O)-cycIoalkyl-R8, -C(O)-heterocyclyl-R8, -C(O)-aryl-R8, -C(O)-heteroaryl-R8, -C(NH)-NH2, -CO2H, -CiOj-O-tCuOalkyl-R9, -C(O)-O-aryl-Rs, -SH, -S-(C|Aalky!-Rl<!, -SCMC^alkyf-R9, -SO2-aryl-Rs, -SO2-NH2, -SO?-NH(Cj.salkyl-R9), -SO2-N(Ci.salkyl-Ryb, -N-R7, cyano, halogen, hydroxy, nitro, -cycloalkyl-R8, -heterocyclyi-R8, -aryl-Rs and -heteroaryl-R8;
R10 is 1 to 2 substituents independently selected from the group consisting of hydrogen, -NH2, -NH(C| salkyi), -NfC[.salkyt)2, cyano, (halo)u, hydroxy, nitro and oxo; and,
Y and Z are independently selected from the group consisting of O, S, (H,OH) and (H,H); with the proviso that one of Y and Z is O and the other is selected from the group consisting of O, S, (H,OH) and (H,H); and pharmaceutically acceptable salts thereof.
Embodiments of the present invention include compounds of Formula (II) wherein. R is selected from the group consisting of Ra, -CMalkyI-Ra, -CYalkenyl-R,, -C2„4alkynyl-Ra and cyano.
Embodiments of the present invention include compounds of Formula (II) wherein, Ra is selected from the group consisting of heterocyclyl, aryl and heteroaryl.
In one embodiment, Ra is selected from the group consisting of dihydro-pyranyl, phenyl, naphthyl, thienyl, pyrrolyl, imidazolyl, pyrazolyl, pyridinyl, azaindolyl, indazolyl, benzofuryl, benzothienyl, dibenzofury I and dibenzothienyl.
Embodiments of the present invention include compounds of Formula (11) wherein, R' is selected from the group consisting of hydrogen, -Ci.^alkyl-R5, -C^alkenyl-R5,
- 21 2017202571 19 Apr 2017
-C^alkynyl-R5, -C(O)-(Chalkyl-R', -C(O)-aryl-Rs, -C(O)-O-(C,^)alkyl-R!>1
-C(O)-O-aryl-R\ -C(O)-NH(Cj ^alkyl-R9), -C(O)-NH(aryl-R8), -C(O)-N(CMa1kyl-R9)2, “SOi-(CM)alkyl-R9s -SO2-aryl-Rs, -cycloalkyl-R6, -heterocyclyl-R6, -aryl-R8 and
-heteroaryl-R6; wherein heterocyclyl and hetcroaryl are attached to the azaindole nitrogen atom in the one position via a heterocyclyl or hcteroaryl ring carbon atom.
101031 In one embodiment. Rl is selected from the group consisting of hydrogen, -Ci^alkyl-R5, -aryl-R6 and -heteroaryl-R6; wherein heteroaryl is attached to the azaindole nitrogen atom in the one position via a heteroaryl ring carbon atom.
|0104| In one embodiment, R1 is selected from the group consisting of hydrogen, -Ci4alkyl-R5 and -napbthyl-RB.
10105) Embodiments of the present invention include compounds of Formula (11) wherein, R5 is I to 2 substituents independently selected from the group consisting of hydrogen, -O-(CM)alkyl, -O-(CM)alkyl-OH, -O-(Cj^)alkyl-O-(Cw)afkyl, -O-(C|.4)alkyl-NHz, -O-(CM)alkyl-NH{CMalkyl)5 -0-(C,.4)alkyl-N(Cl4alkyl)z, ,O-(C|.4)alkyl-S-(Ci^)alkyl, -O-(CM)alkyl-S0r(Ci.4)alkyl, -O-(Ci-fialky I-SOZ-NHZ}
-O-(CL-4)alkyl-S02-NH(CMalkyl), -O-(Ci.4)alkyl-SO2-N(CL.4alkyl)z, -O-C(O)H, -O-C(O)-(C|.4)alkyl, -O-C(O)-NHZ, -O-C(O)-NH(CMatkyl)„ -O-C(O)-N(CMalkyl)2, -O-(CiMalkyl-C(O)H, -0-(C(J,)alkyl-C(O)-(CM)alkyl, -O-(CM)alkyl-CO2H, -O-(CM)alkyl-C(O)-O-(C'M)alkyl, O-(C |.4)alkyl-C(O)-NH2,
-O-(C,.4)aIkyl-C(O)-NH(CMalkyl)j -O-iCwlalkyl-CiOJ-NiCMalkylh, -C(O)H. -C(O)-(CM)alkyl, -COZH, -C(O)-O-iCM)alkyl, -C(O)-NH2, -C(NH)-NHZ, -C(O)-NH(C,toaIkyl), -C(O)-N(C|-4aIkyl)z, -SH, -S-(C).4)aIkyl, -S-(Ci.4)alkyl-S-(Ci.4)alkyl, -S-(CM)alkyl-O-(C|j4)alkyl,
-S-(CM)alkyl-O-(CM)alkyl-OH, -S-(CM)alkyl-O-(CM)alkyl-NH2, -S-(Ci.4)alkyl-O-(CM)alkyl-NH(Ci.4alkyl), -S-(CM)alkyl-O-(Ci.4)alkyl-N(CMalkyl)z, -S-(CM)alkyl-NH(CMaJkyl), -SOz-(CM)alkyl, -SOZ-NHZ, iSO2-NH(Ci-4alkyl), -SO2-N(C|j(alkyl)2, -N-R7, cyano, (halo)j.3, hydroxy, nitro, oxo, -cycloalkyl-R6, -heterocycly!-R6, -aryl-R6 and -heteroaryl-R6.
- 222017202571 19 Apr 2017 |01061 In one embodiment, R5 is 1 to 2 substituents independently selected from the group consisting of hydrogen, -O-(CM)alkyl, -N-R, hydroxy and -heteroaryl-R6.
101071 In one embodiment, R5 is 1 to 2 substituents independently selected from the group consisting of hydrogen, -O-(CM)alkyl, -N-R7, hydroxy, -imidazolyl-R6, -triazolyl-R6 and -tetrazolyl-R6.
|0108| Embodiments of the present invention include compounds of Formula (II) wherein, R6 is to 4 substituents attached to a carbon or nitrogen atom independently selected from the group consisting of hydrogen, -Ci^alkyl, -C2ualkenyl, -C2^alkynyl, -C(O)H, -C(O)-(CM)alkyl, -CO2H, -C(O)-O-(C]^)alkyl, -C(O)-NH2, -C(NH)-NH2, -C(O)-NH(CMalkyl), -C(O)-N(CM)alkyl)2, -SO2-(Cw)atkyl, -SO2-NH2, -SO2-NH(CMa[kyl), -SO2-NfCMalkyl)2, -(CA)alkyl-N-R7, -(CM)alkyl-(halo)u} -(CiuOalkyl-OH, -aryl-R8, -(CM)alkyl-ary 1-RS and -(CM)alkyl-heteroaryl-R8; with the proviso that, when R6 is attached to a carbon atom, R6 is further selected from the group consisting of-Ci ^alkoxy, -(Cs^)alkoxy-(halo)i„3, -SH, -S-(Ci^)alkyl, -N-R7, cyano, halo, hydroxy, nitro, oxo and -heteroaryl-Rs,
10109) In one embodiment, R6 is hydrogen.
101101 Embodiments of the present invention include compounds of Formula (II) wherein, R7 is substituents independently selected from the group consisting of hydrogen, -CMalkyl, -CMalkenyl, -C^alkynyl, -(CM)alkyl-OH, -(CM)alkykO-(CM)alkyl, -(CM)alkyl-NH2, -(Cw)alkyl-NH(CMalliyl), -(CM)alkyl-N(Cwalkyl)2j -(Cw)alkyl-S-(CM)alkyl, -C(O)H, -C(O)-(CM)alkyl, -C(O)-O-(C,.4)alkyla -C(O)-NH2> -C(O)-NH(C,.4alkyl),
-C(O)-N(CMalkyl)2, -SO2-<C|.4)alkyl, -SO2-NH2, -SO2-NH(C|.4alkyl)!
-SO2-N(Ci ialkyl)2, -C(N)-NH2i -cycloalkyl-Rs, -(CuJalkyl-hcterocyclyl-R3, -aryl-R3, -{Ci-4)alkyl-aryl-Rs and -(Ci-4)alkyl-heteroaryI-Rs.
101111 In one embodiment R7 is 2 substituents independently selected from the group consisting of of hydrogen, -C,_4alkyl, -C(O)H, -C(O)-(CM)aIkyl, -C(O)-O-(CM)alkyl, -SO2-NH2l -SO2-NH(Ci.4alkyl) and -SO2-N(Ct-4aIkyl)2.
- 23 2017202571 19 Apr 2017
101121 |0113) |01141 [0115] [0116| [0117]
Embodiments of the present invention include compounds of Formula (II) wherein, R8 is L to 4 substituents attached to a carbon or nitrogen atom independently selected from the group consisting of hydrogen, -C|.iialkyl, -(Ci/alkyl-Oialo/ and -(Ci_4)alkyl-OH: with the proviso that, when Rs is attached to a carbon atom, Rs is further selected from the group consisting of -Cm alkoxy, -NH2, -NlbCi.jalkyl), -N(CMalkyl)2, cyano, halo, -(Ci_i)alkoxy“(haIo)i-3, hydroxy and nitro,
In one embodiment, R8 is hydrogen.
Embodiments of the present invention include compounds of Formula (II) wherein, R9 is 1 to 2 substituents independently selected from the group «consisting of hydrogen, -Ci„ialkoxy, -NH2, -NH(CMaIkyI), -NfCualkyOi, cyano, (halo)u, hydroxy and nitro.
In one embodiment, R9 is hydrogen.
Embodiments of the present invention include compounds of Formula (II) wherein, R is one substituent attached to a carbon or nitrogen atom selected from the group consisting of hydrogen, -Chalky l-R5, -Ci^alkenyl-R5, -Cj.^alkynyl-R5, -C(O)H„
-C(OHCM)alky!-Ry, -C(0)-NH2, -C(O)-NH(Cualkyl-R9), -C(O)-N(Ci-,aIkyl-R9)2, -C(O)-NH(aryl-R8), -C(0)-cycl0alkyl-R§, -C(O)-heterocyclyl-R8, -C(O)-aryl-R8, -C(O)-hetcroaryl-Rs, -CO2H, -C(0)-O-(CM)alkyl-R9, -C(O)-O-aryl-R8, -SO2-(CM)alkyl-R9, -SO2-aryl-R8, -cycloalkyl-R6, -aryl-R6 and -(CM)alkyl-N-R7; with the proviso that, when R2 is attached to a carbon atom, R2 is further selected from the group consisting of -C Malkoxy-RJ, -N-R7, cyano, halogen, hydroxy, nitro, oxo, -heterocyclyl-R6 and -heteroaryl-R6.
In one embodiment, R is one substituent attached to a carbon or nitrogen atom selected from the group consisting of hydrogen, -Cmalkyl-R5, -C2.4alkenyl-R5, -C24alkynyl-Rs, -CO2H, -C(O)-O-(CM)alkyl-R‘J, -cycloalkyhR6, -aryl-Re and -(CM)alkyl-N-R7; with the proviso that, when R2 is attached to a nitrogen atom, a quaternium salt is not formed; and, with the proviso that, when R2 is attached to a carbon atom, R2 is further selected from the group consisting of -Ci^alkoxy-R5, -N-R7, cyano, halogen, hydroxy, nitro, oxo, -heterocyclyl-R6 and -hcteroaryl-R6.
- 242017202571 19 Apr 2017
101181 In one embodiment, R2 is one substituent attached to a carbon or nitrogen atom selected from the group consisting of hydrogen, -CMalkyl-R5 and -aryl-R6; with the proviso that, when R2 is attached to a nitrogen atom, a quatemium salt is not formed; and, with the proviso that when R2 is attached to a carbon atom, R2 is further selected from the group consisting of -N-R7, halogen, hydroxy and -heteroaryl-R6.
[0119| Embodiments of the present invention include compounds of Formula (II) wherein, R3 is to 3 substituents attached to a carbon atom independently selected from the group consisting of hydrogen, -Crralkyl-R10, -C2.4alkenyl-R!0, -C2^alkynyl-R10,
-C^alkoxy-R19, -C(O)H, -CiOEfCiffialkyl-R9, -C(O)-NH2, -C(O)-NH (Chalky I-R^
-C(O)-N(C Malkyl-R9)2,-C(O)-cycIoalkyl-Rs, -C(O)-heterocyclyl-Rs, -C(O)-aryl-R-)
-C(O)-Iicteroaryl-Rs, -C(NH)-NH2, -CO2H, -C(O)-O-(Ci^)alkyl-Rs, -C(O)-O-aryl-R8,
-SO2-(Ci„g)alkyl-RS, -SO2-aryl-R8, -N-R7, -(CM)alkyl-N-R7, cyano, halogen, hydroxy, i S S & S nitro, -cycloalkyl-R , -heterocycIyl-R , -aryl-R and-heteroaryl-R .
[0120) In one embodiment, R'1 is one substituent attached to a carbon atom selected from the group consisting of hydrogen, -Ci^alkyl-R10, -Cj^alkenyl-R10, -C?^alkynyl-R10, -Cr4alkoxy-Rl(J, -C(O)H, -CO2H, -NH2, -NH(CMalkyl), -N(CMalkyl)2, cyano, halogen, hydroxy and nitro.
101211 In one embodiment, R3 is one substituent attached to a carbon atom selected from the group consisting of hydrogen, -Cj^alkyl-R10, -NH2, -NH(C|^alkyl), -N(CMalkyl)2, halogen and hydroxy.
[01221 Embodiments of the present invention include compounds of Formula (II) wherein, R4 is to 4 substituents attached to a carbon atom independently selected from the group consisting of hydrogen, -Cj_4alkyl-RIU, -C2^alkenyl-Rlcl, -Cz^alkynyl-R10, -CMalkoxy-R10, -C(O)H, -C(O)-(C, A)alkyl-R\ -C(O)-NH2, -C(O)-NH(Ch4alkyl-Ri>), -C(O)-N(Ciaalkyl-R9)2, -C(O)-cycloalkyl-Rs, -C(O)-heterocyclyl-Rs, -C(O)-aryl-R8, -C(O)-heteroaryl-R8, -C(NH)-NH2, -CO2H, -C(Oj-O-(CM)aIkyI-Rs, -C(O)-O-aryl-Rs, -SH, -S-(CM)alkyl-Ri0, -SO2-(C .ffialkyl-R9, -SO2-aryl-R8, -SOrNH?,
-SO2-NH(Ci_4alkyt-R9),-SO2-N(CMalkyl-R9)2, -N-R7, cyano, halogen, hydroxy, nitro, -cycloalkyl-R8, -heterocyclyl-R8, -aryl-Rs and -heteroaryl-R9,
-252017202571 19 Apr 2017 |01231 1 n one embodiment, R4 is 1 to 4 substituents attached to a carbon atom independently selected from the group consisting of hydrogen, -C, ^alkvl-R10, -CT^alkenyl-R1,
-CMalkynyl-Rlc, -CMalkoxy-Rw, -C(O)H. -COZH, -NHZ, -NH(CMalkyl), -N(Cwalkyl)2, cyano, halogen, hydroxy, nitro, -cycloalkyl, -heterocyclyl, -aryl and -heteroaryl.
10124) In one embodiment, R4 is 1 to 4 substituents attached to a carbon atom independently selected from the group consisting of hydrogen, Ci_4alkyl-Rlu, Ci_4alkoxy-R10, -NH2, -NH(C|^alkyl), -N(Ci-4alkyl)2, halogen and hydroxy, |0125) In one embodiment, R4 is 1 to 4 substituents attached to a carbon atom independently selected from the group consisting of hydrogen, CMalkyl-R10, Cj^alkoxy-R10, -NH2, -NH(Ci^alkyl), -N(Cnalkyt)2, chlorine, fluorine and hydroxy, [0126] Embodiments of the present invention include compounds of Formula (Il) wherein, R10 is 1 to 2 substituents independently selected from the group consisting of hydrogen, -NH2, -NH(C iJtalkyl), -N(CM^lkylfe, cyano, (halo)j.3, hydroxy, nitro and oxo,
10127J In one embodiment, R10 is 1 to 2 substituents independently selected from the group consisting of hydrogen and (halo)u.
[0128| In one embodiment, R10 is 1 to 2 substituents independently selected from the group consisting of hydrogen and (fluoro)j.
[01291 Embodiments ofthe present invention include compounds of Formula (II) wherein, Y and Z are independently selected from the group consisting of O, S, (H,OH) and (H,H); with the proviso that one of Y and Z is O and the other is selected from the group consisting of O, S, (H,OH) and (H,H).
|0130| In one embodiment, Y and Z are independently selected from the group consisting of O and with the proviso that one of Y and Z is O, and the other is selected from the group consisting of O and
10131] In one embodiment, Y and Z are independently selected from O.
- 262017202571 19 Apr 2017 [0132| Compounds of Formula (Π) are disclosed in commonly assigned United States Patent
Number 7,125,878, the complete disclosure of which is herein incorporated by reference.
|0133| An example of the invent ion includes a compound of Formula (11) wherein the compound is selected from the group consisting of:
Compound Name
3“(2-chlorophenyl)-4-[]-(3-hydroxyprapyl)-l//-pyrrofo[2,3-/>]pyridin-3yl]-l //-pyrrole-2,5-dione,
3-(2-chloropheny l)-4-[l -[3-(dimethylamino )propy t ]-l//-pyrrolo[2,36]pyridine-3-yl]-l//-pyrrole-2,5-dione,
3-[l-(3-hydroxypropyl)-l//-pyrrolo[2,3-Z>]pyridin-3-yl]-4-(1naphthaieny 1)-1 //-pyrro le-2,5-dione,
3-[ 1 -[3-(dimethylamino)propyl]-l //-pyrrolo[2,3-b]pyridin-3-yl]-4-( I naphthalenyl)-1 //-pyrrole-2,5-dione,
3-(5-chlorobcnzo[0]thien-3-yl)-4-[l-(3-hydroxypropyl)-l//-pynOlo[2.3h]pyrid ine-3-y 1 ] -1 //-pyrrole-2,5 -dione,
3-[ 1 -{3-hydroxypropyl)-l //-pyrrolo[2,3-/j]pyridin-3-yl]-4-( 1 //-indazol-3y 1)-1//-pyrrole-2,5-dione,
3-{l-ethyl-l/7-pyrrolo[2,3-Z?]pyridin-3-yl)-4-[l-(3-hydroxypropyl)-l//pyrrolo[2,3-Z>]pyridin-3-yl]-1 //-pyrrole-2,5-dione,
3-[l-(3-hydiOxypropyl)-l//-pyiTO]o[2,3-5]pyridin-3-yl]-4-(2mcthoxyphenyl)-l//-pyrrole-2,5-dione,
3-[ l-(3-hydroxypropyl)-l//-pyrrolo[2,3-d]pyridin-3-yl]-4-(3methoxyphenyl)-l//-pyrrole-2,5-dione,
- 272017202571 19 Apr 2017
3-(2-chloro-4-fluorophenyl)-4-[l-(3-hydroxyprapyl)-l/7-pyrrolo[2,36]pyridine-3-yl]-1 //-pyrrole-2,5-dione,
3-[l-(3-hydroxypropyl)-l//-pynolo[213-Z?]pyridin-3-yl]-4-[2<trifluoroinetliyr)phenyl]-l/i-pyiTOlc-2,5-dione,
3-[l-{3-hydroxypropyl)-l//-pyiro]o[2,3-0]pyridin-3-yl]-4-(2-pyridiny])1 //-pyrro le-2,5-dione,
3-[3-chloi'o-5-(trifluoromethyl)-2-pyridirLyI]-4-[l-(3-hydroxypropyl)-l// pyrroIo[2,3-0]pyridln-3-yl]-l //-pyrrole-2,5 -dione,
3-[ 1 -(3-hydroxypropyl)-1 //-pyiTolo[2,3-i]pyridin-3-yl]-4-(2-thienyl)I //-pyrrole-2,5-dione,
3-(2,5-dich]oro-3-thienyl)-4-[l-(3-hydiOxypropyl)-l//-pynOlo[2.3Z>]pyridine-3-yl]-l //-pyrrole-2,5-dione,
3-[l-(3-hydroxypropyl)-1 //-pyrazo!-3-ylJ-4-[ 1 -(3-hydroxypropyl)-1//pyrrolo[2,3-Z?]pyridin-3-yl]-1 //-pyrrole-2,5-dione,
3-[l-(3-hydroxypropyl)-l//-pyrrolo[2,3-/)]pyridin-3-yl]-4-(]//-imidazol2-yl)-l //-pyrrole-2,5-dione,
3-[l-(3-hydroxypropyl)-17/-imidazol-4-yt]-4-[t-(3-hydroxypropyl)-17/pyrrolo[2,3-6]pyridm-3-yl]-l//-pyrrole-2,5-dione,
3-[ 1 -(2-hydroxyethyl)-1 //-imidazol-4-yl]-4-[ 1 -(3-hydroxypropyl)-1Hpyrrolo [2,3 -ύ] pyndin-3-y 1]-1 //-pyrro le-2,5 -dione,
3-[l-[3-(dirficthylamino)propyl]-l//-indazol-3-yl]-4-[]-(2-naphthalenyl)· l//-pynOlo[2,3-0]pyridin-3-y[]-l//-pyrrole-2,5-dione,
3-[ 1 -(3-hydroxypropyl)-l i/-indazol-3-yl]-4-[l -(2-naphthalenyl)-1//pyrrolo[2,3-Z)]pyridin-3-yl]-17/-pyrrale-2,5-dione,
-282017202571 19 Apr 2017
3-[(£)-2-(4-fluorophenyl)ethenyl]-4-[l-(3-hydraxypiOpyl)-l//pyrrolo[2,3-Z)]pyridin-3-yl]-I//-pyrrale-2,5-dione,
3-(3,4-dihydro-2//-pyran-6-yl)-4-[ 1 -(3-hydroxypropyl)- l//-pyrrolo[2,30]pyridi nc-3-y I ] -1 //-pyrro le-2,5-dion e,
4-[ l-(3-liydiO.\ypiOpyl)“l//-pynolo[2,3-0]pyridin-3-yl]-[3,3'-bi-l Hpyrrote]-2,5-dione,
3-(2-benzofuranyl)-4-|4-(3-hydroxypropy[)-l//-pyrrolo[2,3-0]pyridm-3yl]-1 //-pyrro le-2,5-di one,
3-(1 -(3-hydroxypropyl)-1 //-pyrrolo[2,3-Z>]pyridin-3-yl]-4-( 1 -methyl-1// pyrazol-3-yl)-] //-pyrrole-2,5-dione,
2,5-dihydro-4-[l-(3-hydroxypropyl)-1//-pyrrolo[2,3-/>]pyridin-3-yl]-2,5dioxo-l//-pyrrole-3-carbonitrile,
3-dibenzo[/?,z/]thicn-4-yl-4-[] -(3-hydroxypropyl)-l//-pyrroio[2,3Z>]pyridine-3-yl]-l//-pyrrole-2,5-dione,
3-(4-dibenzofuranyl )-4-[ 1 -(3-hydroxypropyl)- I //-pyrro lo[2,3-/j]pyrid in3-yl]-l//-pyrrole-2,5-dione,
3-(2-hydroxyphenyl)-4-[ 1-(3-methoxypropyi)-l //-pyrrolo [2,3-/j]pyridin· 3-yl]-l//-pyrrole-2,5-dione,
3-(3,4-dimethoxypheny])-4-[l-(3-methoxypropyl)-l//-pyiTolo[2,3ifipyridi nc-3-y 1] -1 //-pyrro le-2,5 -dione,
3-(3,4-dihydroxypheny I )-4-( I -(3-hydroxypropyl)-1 //-pyrrolo[2,3&]pyridine-3-yl]-1 //-pyrrole-2,5-dione,
3-(2-methoxyphenyl)-4-[ I -(2-naphthalenyl)-1 //-pyrroIo[2,3-0]pyridin-3 yl]-1 //-pyrrole-2,5 -dion e,
- 292017202571 19 Apr 2017 [3-[3-[2,5-dihydro-4-(2-methoxyphenyl)-2,5-dioxo-l//-pyrrol-3-yl]-17/pyrrola[2,3-Z}]pyndin-l-yl]propyl]-carbamic acid 2-methylpropyl ester,
3-[ 1 -(3-aminopropyl)- l/7-pyrralo[2,3-&]pyridin-3-yl]-4-(2mcthoxyphenyl)-17/-pynoIe-2,5-dione, ?7-[3-[3-[2,5-dihydro-4-{2-methoxypheny 1)-2,5-dioxo-1 //-pynol-3-yl]1 7/-pyrrolo[2,3-/j]pyridin-1 -yljpropy 1] -acetamide,
V-[3-[3-[2,5-dihydrori-(2-methoxyplieny 1)-2,5-dioxo-l/7-pytTOl-3-yl]1 Ti-pyrrolo [2,3-ft]pyr id in-1-y Ijpropy 1]-su 1 famide,
3-(2-methoxypheny])-4-[]-[3-(l//-tetrazol-l-yL)propyl]-17/-pyrrolo[2,36]pyridine-3-yl]-177-pyrrole-2,5-dione,
3-(2-metboxyphcny!)-4-[l -[3-(2//-tetrazol-2-yl)propyl]-l//-pynolo[2,3i)]pyridine-3-ylj-l/7-pyrrole-2,5-dione,
3-[ 1 -(3-hydroxy-propyl)-l H-pyrrolo[2,3-b]pyridin-3-yl]-4-pyrazin-2-ylpyrroIe-2,5-dione,
3-(2,4-dimethoxy-pyrimidin-5-yl)-4-[ I -(3-hydroxy-propyl)-l HpynOlo[2,3-bjpyridin-3-yl]-pyiTole-2,5-dione,
4- [3-[4-(2,4-dimethoxy-pyrimidin-5-yI)-2,5-dioxo-2,5-dihydro-l HpyriOl-3-yl]-pyrrolo[2,3 -bjpyridin-1 -ylj -butyronitrile,
4-{3-[4-( 1 -methyl-lH-pyrazol-3-yl)-2,5-dioxo-2,5-dihydro-l H-pyrrol-3yl]-pyrTolo[2,3-b]pyridin-] -yl j -butyronitrile, and
3-(2,4-dimethoxy-pyrimidin-5-yl)-4-( 1 -phenethyl-] H-pyrrolo[2,3b]pyridine-3-yl)-pyrrole-2,5-dione.
|0134| An example of the invention includes a compound of Formula (11) wherein the compound is selected from the group consisting of:
-302017202571 19 Apr 2017
Figure AU2017202571B2_D0011
Compound 44
10135J In one embodiment, the inhibitor of GSK.-3B enzyme activity is a compound of the
Formula (III);
-31 2017202571 19 Apr 2017
Figure AU2017202571B2_D0012
|0136) wherein
10137)
A and E arc independently selected from the group consisting of a hydrogen substituted //x
Figure AU2017202571B2_D0013
carbon atom and a nitrogen atom; wherein N is independently selected from the group consisting of 1/7-indote, ]/7-pyrrolo[2,3-b]pyridine, l//-pyrazolo[3,4ftjpyridine and 1 /7-indazole;
|0138) Z is selected from O; alternatively, Z is selected from dihydro; wherein each hydrogen atom is attached by a single bond;
10139) Ri and Rs are independently selected from C[.«alkyl, Cz-salkenyl and C2_Ralkynyl optionally substituted with oxo;
|0140) R-2 is selected from the group consisting of -Cualkyl-, -CYsalkenyl-, -CAsalkynyl-,
-O-(C|.s)alkyl-O-, -O-iQAalkenyl-O-, -O-(C2_R)alkynyl-O-. -C(O)-(ChS)alkyl-C(O)(wherein any of the foregoing alkyl, alkenyl and alkynyl linking groups are straight carbon chains optionally substituted with one to four substituents independently selected
-322017202571 19 Apr 2017 from the group consisting ofCi.«alkyl, Ci-galkoxy, C|^aIkoxy(Ci-s)alkyl, carboxyl, carboxy 1(Ci_s)alkyl, -C(O)O-(C|.s)alkyl, -Ci.ftalkyl-C(O)O-(Ci.s)alkyl, amino (substituted with a substituent independently selected from the group consisting of hydrogen and Cualkyl), aniino(Cj.s)alkyl (wherein amino is substituted with a substituent independently selected from the group consisting of hydrogen and Ci^allcyl), halogen, (ha!o)].3(CL^)alkyl, (halo)i.3(C^alkoxy, hydroxy, hydroxy(C|.s)alkyl and oxo; and, wherein any of the foregoing alkyl, alkenyl and alkynyl linking groups are optionally substituted with one to two substituents independently selected from the group consisting of heterocyclyl, aryl, heteroaiyl, heterocyclyl(Ci_a)alkyl, atyl(Ci.g)alkyl, hetciOaryl(Cj-s)alkyl, spirocycloalkyl and spiroheteroeyclyl (wherein any of the foregoing cycloalkyi, heterocyclyl, aryl and heteroaryl substituents are optionally substituted with one to four substituents independently selected from the group consisting of C,.«alkyl, Ct-salkoxy, C|.,salkoxy(Ci.«)alkyl, carboxyl, carboxyl(C|.s)alkyl, amino (substituted with a substituent independently selected from the group consisting of hydrogen and Ci^alkyl), amino(Ci-g)alkyl (wherein amino is substituted with a substituent independently selected from the group consisting of hydrogen and Cj^alkyl ), halogen, (halo)[.3(Ci-g)alkyI, (halo)[.3{Ci.g)alkoxy, hydroxy and hydroxy(Ci-s)alkyl; and, wherein any of the foregoing heterocyclyl substituents are optionally substituted with oxo)), cycloalkyi, heterocyclyl, aryl, heteroaryl (wherein cycloalkyi, heterocyclyl, aryl and heteroaryl are optionally substituted with one to four substituents independently selected from the group consisting gf Ci_BaIkyl,C|.«alkoxy, C μ «alkoxy (C|.s)alkyl, carboxyl, carboxy l(C|.s)alkyl1 amino (substituted with a substituent independently selected from the group consisting of hydro gen and Chalky!), amino(Ci_g)alkyl (wherein amino is substituted with a substituent independently selected from the group consisting of hydrogen and Chalky]), halogen, (halo)].3(C|_s)alkyl, (halo)].3(C[_g)alkoxy, hydroxy and hydraxy{C|.s)alkyl; and, wherein heterocyclyl is optionally substituted with oxo), -(0-(CH2)i^)o5'0’, -O-(CH2)j.6-O-(CH2)w-O-, -(HCH2)w-0-(CH2)w.O4CH2)u.0., -(0-(CH2),^)o.5-NRi-, -O-(CH2)i.G-NR<5-(CH2),^O-,-O-(CH2},-6-O-(CH2)l.s-NRi-, -(O-(CHi)t^)0.5-S-. -0<CH2),.6-S-(CH2)^-0-, -O-(CH2)w-O-(CH2)w-S-, -NR,,-, -NRe-NR?-, -NRg-{CH2)i.g-NR7-, -NR-(CH2)i.6-NR7-(CH2)r6-NRR-, -NR^-CfO)-, -C(O)-NR<r, -C(O)-(CH2WNRG-(CH3)0.6-C(O)-,
-33 2017202571 19 Apr 2017
-NR6-(CH2)0.6-C(O)-(CH2)1.6-C(Oh(CH2)c.6-NR7-,-NR6-C(O)-NR7-, -NR6-C(NR7)-NRS-, -O-(CH2)i_6-NRHCH2WS-, -S-iCHjJj.e-NRACH,)-S-(CH2),.6-NR6-(CH2)^-S-, -NR6-(CH2)|.6-S-(CH2)i4i-NR7- and -SO2- (wherein Re, R? and Rk are independently selected from the group consisting of hydrogen, Ct-salkyl, C|.salkoxy(C|.s)alkyl, carboxyl(Cj.8)alkyl, amino(Ci_s)alkyl (wherein amino is substituted with a substituent independently selected from the group consisting of hydrogen and Cj.4a.lkyl ), hydroxy(Ci_is)alkyl, heterocyclyl(C't^)alkyl, aryl(C].»)alkyI and heteroaryl(Ci_K)alkyl (wherein the foregoing heterocyclyl, aryl and heteroaryl substituents are optionally substituted with one to four substituents independently selected from the group consisting ofCrsalkyl, Ci^alkoxy, Ci.Ralkoxy(Cj_8)alkyl, carboxyl, carboxyl(Ci.g)alkyl, amino (substituted with a substituent independently selected from the group consisting of hydrogen and Ci^alkyl), amino(Ci-8)alkyl (wherein amino is substituted with a substituent independently selected from the group consisting of hydrogen and Chalky I), halogen, (halo)i_i(Cj.is)aJkyl, (halo)iACi-s)alkoxy, hydroxy and hydroxy(C)^)alkyl; and, wherein heterocyclyl is optionally substituted with oxo)); with the proviso that, if A and E are selected from a hydrogen substituted carbon atom, then R2 is selected from the group consisting of -CAalkynyl-, -O-(Ci-8)alkyl-O-, -O-(C2.s)alkenyl-O-,
-O-(C2_s)alkynyl-O-, -C(O)-(C|,s)alkyl-C(O)- (wherein any of the foregoing alkyl, alkenyl and alkynyl linking groups are straight carbon chains optionally substituted with one to four substituents independently selected from the group consisting of Ct-galkyl, C^alkoxy, Ci.salkoxy(Ci-s)alkyl, carboxyl, carboxylfCi.sjalkyt, -C(O)O-(C|.B)alkyl,
-Ci salkyl-C(O.)O-(C| s)alkyl, amino (substituted with a substituent independently selected from the group consisting of hydrogen and Chalky I), amino(Cfrs)alkyl (wherein amino is substituted with a substituent independently selected from the group consisting ofhydrogen and Chalky 1), halogen, (halo)].i(Cns)alkyl, (halo)].2(C|_s)alkoxy, hydroxy, hydroxy(Ci.fi)alkyl and oxo; and, wherein any of the foregoing alkyl, alkenyl and alkynyl linking groups are optionally substituted with one to two substituents independently selected from the group consisting of heterocyclyl, aryl, heteroaryl, heterocyclyl(C|-s)alkyl, aryl(Ci.s)alkyl, heteroaryl(Ci.g)alkyl, spirocycioalkyl and spiroheterocyclyl (wherein any of the foregoing cycloalkyl, heterocyclyl, aryl and hetcroaryl substituents are optionally substituted with one to four substituents
-342017202571 19 Apr 2017 independently selected from the group consisting of Ci/alkyl, Ci/alkoxy,
C|,salkoxy(Ci_f!)alkyl, carboxyl, carboxy I (C|.s)alkyl, amino (substituted with a substituent independently selected from the group consisting of hydrogen and C|/alkyi), amino(Ci/)alkyl (wherein amino is substituted with a substituent independently selected from the group consisting of hydrogen and Ci/alkyl), halogen, (halo)i/(C| .gjalkyl, (halo)i/(Ci/)alkoxy, hydroxy and hydroxy(C].g)alkyl; and, wherein any of tire foregoing heterocyclyl substituents are optionally substituted with oxo)), cycloalkyl (wherein cycloalkyl is optionally substituted with one to four substituents independently selected from the group consisting ofCj-galkyl, Ci/alkoxy, Ci/aIkoxy(’Ci/)alkyl, carboxyl, carboxyl(Ci/)alkyl, amino (substituted with a substituent independently selected from the group consisting of hydrogen and Ci/alkyl), amino(Ci/)alkyl (wherein amino is substituted with a substituent independently selected from the group consisting of hydrogen and Cj/alkyl), halogen, (halo)i/(Ci/)alkyl, (halo)i/(C|.s)alkoxy, hydroxy and hydroxy(Ci_g)alkyl),-(O-(CH2)i/)t/-O-, -0-(CH2)I/r0-(CH2),.ii-O-, -O-(CH2)1.6-O-(CH2)1/-O-(CH2)i.6-O-, -(O-CCtkh.eh.s-NRi-,
-O-(CH2)^-NRi-(CH2)1/rO-)-0-(CH2)J/-O-(CH2)i/-NR6-, -(O-(CH2),/)Q/-S-, -0-((^)^-8-(013^/-0-, -O-(CH2)i/-O-(CH2)i/-S-, -NRs-W, -NR(i-(CH3),/-NR7-, -NRHCHzKe-NRriCHs^-NRs-, -NR9-C(O)-5 -C(O)-NRy-,
-C(O)-(CH2)0.6’NRii-(CH2)0.6-C(O)-, -NR6-(CH2F.fi-C(O)-(CH2),.6-C(O)-(CH2WNR7-, ,NR^C(0)-NR7-, -NRfi-C(NR7)-NRs-, -O-(CH2)i_s-NR6-(CH2)]/-S-, -STCHOiz-NRi-tCH^M-O-, -S-(CH2)|.6-NRf,-(CH2)i/-S- and
-NR6-(CH2)i/-S-(CH2)i/-NR7- (wherein Rs, R7 and Rs are independently selected from the group consisting of hydrogen, Ct_salkyl, G/alkoxy(Ci/)alkyl, carboxy l(Ci_8)alkyl, amino(CL-s)alkyl (wherein amino is substituted with a substituent independently selected from the group consisting of hydrogen and Cj/alkyl), hy droxy (C//)alkyl, heterocyclyl(Ci-s)alkyl, aryl(Ci/)alkyl and heteroaryl(Ci-s)aIkyt (wherein the foregoing heterocyclyl, aryl and heteroaryl substituents are optionally substituted with one to four substituents independently selected from the group consisting of Ci^alkyl, C i/alkoxy, C|_salkoxy(Ci_s)alkyl, carboxyl, carboxyl(Ci_g)alkyl, amino (substituted with a substituent independently selected from tire group consisting of hydrogen and C|/alkyl), amino(Ci/)alkyl (wherein amino is substituted with a substituent independently selected
-352017202571 19 Apr 2017 from the group consisting of hydrogen and C].4alkyl), halogen, (halo)i^(C i-sjalkyl, (halo)!.3(C[_ft)alkoxy3 hydroxy and hydroxy(CpS)alkyJ; and, wherein heterocyclyl is optionally substituted with oxo); and, wherein Rg is selected from the group consisting of Ci-salkyl, C|.salkoxy(Ci,s)alkyl, carboxyl(Ci,s)alkyl, amino(C).R)alkyl (wherein amino is substituted with a substituent independently selected from the group consisting of hydrogen and Cj.4alkyl), hydroxy(Ci,g)atkyl, hetcrocyclyl(Ci-s)ajkyt, aiyl(C[^)alky 1 and heteroaryl(Ci_8)alkyl (wherein the foregoing heterocyclyl, aryl and heteroaryi substituents are optionally substituted with one to four substituents independently selected from the group consisting of Ci-gaLkyl, Ci_8alkoxy, Ci.salkoxy(Cb8)alkyl, carboxyl, carboxyI(Cj.:))alkyl, amino (substituted with a substituent independently selected from the group consisting of hydrogen, and C i_4alkyl), amino(C|_s)alkyl (wherein amino is substituted with a substituent independently selected from the group consisting of hydrogen and Chalky 1), halogen, (halo)i-j(Ci^)alkyl, (halo)]-jt(C|^)alkoxy, hydroxy and hydroxy(Cjji)alky!; and, wherein heterocyclyl is optionally substituted with oxo)); and, [0141] R| and Ri are independently selected from the group consisting of hydrogen, Cj.galkyl, Cz-salkenyl, Cj.palkynyl (wherein alkyl, aLkenyl and alkynyl are optionally substituted with a substituent selected from the group consisting of C’i_8alkoxy, alkoxy(C i_s)alkyl, carboxyl, carboxyl(Ci.B)alkyl, amino (substituted with a substituent independently selected from the group consisting of hydrogen and C|.4alkyl), amino(C| .slalky 1 (wherein amino is substituted with a substituent independently selected from the group consisting of hydrogen and Cualkyl), (halo)i_3, (haloh-aCCi-sMkyl, (halofiXCrslalkoxy, hydroxy, hydroxy(C|.s)alkyl and oxo). C i.«alkoxy, Ci^alkoxycarbonyl, (lialo)).«(C).«)alkoxy. Crsalkylthio, aryl, heteroaryi (wherein aryl and heteroaryi are optionally substituted with a substituent selected from the group consisting of Chalky!, Cigalkoxy, alkoxy(Ci_g)alkyl, carboxyl, carboxyl(Ci-s)alkyl, amino (substituted with a substituent independently selected from the group consisting of hydrogen and C|.4alkyl), amino(C|.s)alkyl (wherein amino is substituted with a substituent independently selected from the group consisting of hydrogen and Cualkyl), halogen, (halo)i-.i(C i Aalkyl, (halo)j j(C!_s)aIkoxy, hydroxy and hydroxy(Ci.g)alkyl), amino (substituted with a substituent independently selected from the group consisting of hydrogen and Chalky!), cyano, halogen, hydroxy and nitro; and pharmaceutically acceptable salts thereof.
-36|01421
In one embodiment, a compound of Formula (III) is a compound selected from the group
2017202571 19 Apr 2017 consisting of:
Figure AU2017202571B2_D0014
Figure AU2017202571B2_D0015
Figure AU2017202571B2_D0016
Figure AU2017202571B2_D0017
Formula (Ule)
Formula (Illf)
-372017202571 19 Apr 2017
Figure AU2017202571B2_D0018
Figure AU2017202571B2_D0019
Figure AU2017202571B2_D0020
Formula (Illk)
Figure AU2017202571B2_D0021
Formula (Illi)
-382017202571 19 Apr 2017
Figure AU2017202571B2_D0022
Figure AU2017202571B2_D0023
10143] wherein all other variables are as previously defined; and, pharmaceutically acceptable salts thereof.
[0144| In one embodiment, a compound of Formula (Π1) is a compound selected from the group consisting of:
Figure AU2017202571B2_D0024
Figure AU2017202571B2_D0025
-392017202571 19 Apr 2017
Figure AU2017202571B2_D0026
Figure AU2017202571B2_D0027
Η
Figure AU2017202571B2_D0028
Formula (lllj) [0145] wherein all other variables are as previously defined; and, pharmaceutically acceptable salts thereof.
|0146| Compounds of Formula (Ill) are disclosed hr commonly assigned United States Patent Number 6,828,327, the complete disclosure of which is herein incorporated by reference
10147) An example ofthe invention includes a compound of Formula (ΠΊ) wherein the compound is selected from the group consisting of:
-402017202571 19 Apr 2017
Compound Name
Ί 6,7,9,10,12,13,15,16-octahydm-23//-5^26:17,22-dimetheno-5/7dipyrido[2,3-£:3',2'-ij]pyrroIo[3,4“
n][1,4,7,10,19]trioxadjazacyclohenicosinc-23,25(24//)-dione,
10,11, J 3,14,16,17,19,20,22,23-decahydro-9,4:24,29-dimetheno-) Hdipyrido [2,3-tt: 3 ',2'-f]pyrro lo[3,41,4,7,10,13,22]tetraoxadiazacyclotetracosine-1,3(2//)-dione,
10,11,13,14,16,17,19,20,22,23s25,26-dodecahydro-9,4:27,32-dimethenol/7-dipyrida[2,3-<y:3',2'-«/|pyrrolo[3,4r] [ 1,4,7,10,13,16,25 Jpentaoxadiazacy cloheptacosine-1,3 (2//)-dione,
6,7,9,10,12, l3-hcxahydiO-20//-5,23:I4,19-dimetheno-5//dibsnzo[A,«]pyiTolo[3,4-Ar] [1,4,7,16]dioxadiazacyclooctadecine20,22(2 l//)-dione,
6,7,9,10,12,13,15,16-octahydro-23//-5,26:17,22-dimetheno-5/7dibenzo[4,g]pyrrolo[3,4'rt][l,4,7,10,19]trioxadiazacycloheneicosine23,25(24//)-dione,
10,ll,13,14,I6,17,19,20^2,23-decahydro-9,4:2429-dimetheno-l//dibenzo[«, i]pyrrolo[3,4-</][I,4,7,10,13,22]tetraoxadiazacyclotetracosinel,3(2//)-dione,
10,11,13,14,16,17,19,20,22,23125,26-dodecahydro-9,4;27,32-dimetheno1//-d ibenzo[i/,Hj]pyn:oIa [ 3,4r] [1,4,7,10,13,16,25]pentaoxadiazacycloheptacosine-1,3(2//)-dione,
12-hydro-6//, 19//-5,22:13,18:7,1 l-trimethenopyrido[2,37]pyrrolo[3,4m][l ,9]benzodiazacycloheptadecine-l 9,21 (20//)-dione,
-41 2017202571 19 Apr 2017
12-hydro-6//,l 9//-5,22:13,18-dimetheno-7,11 -nitrilopyrido[2,3/]pyiTolo[3,4-ni][l,9]benzodiazacyctoheptadecine-19,21(20//)-dione,
6,7,9,10,12, l3-hexahydro-20//-5,23:I4,19-dimetheno-5//-pyrido[2,3£]pyrrolo[3,4-/i][4,7, l,10]benzodioxadiazacyclooctadccine-20,22(21//)dione,
6,7,9,10,12,13,15,) 6-octahydro-23//-5,26;l 7,22-dimetheno-5//-pyrido[2,3 njpyrrolo [3,4-c/][4,7,10,1,13]benzotrioxadiazacycioficnei cosine23, 25(24/7)-dione,
11 -ethyl-6,7,10,11,12,13,15,16-octahydro-23//-5,26:17,22-dimetheno5//,9//-dibenzo[A*,^]pyrrolo[3,4«][ 1,7,4,10,19] dioxatri azacycloheneicosinc-23,25(24//)-dione,
6,7,10,1 lj 12,.13,15,16-octahydro-l I-methy1-23/7-5,26:17,22-dirnetherio5//,9//-dibenzo[A',^]pyrrolo[3,4n][ 1,7,4,10,19]dioxatriazacycloheneicosine-23,25(24//)-dione,
6,7,10,11,12,13,15,16-octahydro-l 1 -(1 -methy lethy1)-23//-5,26:17,22dimetheno-5//,9//'dibenzo[A,7]pyiTolo[3,4n] [ 1,7,4,10,19] dioxatri azacyc loheneicosine-23,25(24Z/)-d tone,
7,8,9,10,11,12,13,14,15, l6-decahydro-8,11,14-trimethy 1-6//, 23//5,26:17,22-dimethenodibenzo[/j,f]pyiTolo[3,4g][l ,4,7,10,13]pentaazacyctoheneicosine-23,25(24//)-dione,
6,7,10,11,12,13,15,16-octahydro-l l-mcthyI-23//-5,26-metheno-17,22mtrilo-5//.9//-dibenzo[/i,i/]pyrro[o[3,4n][l ,7,4,10,19]dioxatriazacycIohcneicosine-23,25(24//)-dione,
11-ethyl-6,7,10,1I,12,13,I5,16-oetahydro-23//-5,26-metheno-17,22-nitrilo 5//,.9//-dibenzo[£,i/]pyna]o]3,4n][l,7,4,10,19]dioxatriazacycloheneicosine-23,25(24//)-dione,
- 42 2017202571 19 Apr 2017
11-ethyl-6,7,10,11,12,13,15,16-oetahydro-23//-5,26:17,22-dimetheno5 H, 9/i-dipyrido[2,3-U3' ,2 '-G'pyrro lo [3,4n] [ 1,7,4,10,19]dioxatriazacycloheneicosine-23,25(247/)-dione,
6,7,9,10,12,13,15,16-octahydro-237/-5,26:17,22-dihictheno-57/dipyrido[2,3-7:3',2'-gJpyrrolo[3,4n] [ 1,7,4,10,19]dioxathiadiazacyclohenci cosine-23,25(247/)-dione,
7,8,9,10,11,12,13,14,15,16-decahydro-(67/,237/-5,26:17,22dimethenodipyrido[2,3-rt:3',2'-f]pyriO]o[3,4<7 ] [ 1,7,13] triazacyc loheneicosine-23,25(247/)-dicme,
11 -ethy 1-7,8,9,10,11,12,13,14,15,16-decahydro-677,237/-5,26:17,22dimethenodipyrido[2,3-«:3',2'-i]pyiTolo[3,4g][ 1,7,13]triazacycloheneicosine-23,25(247/)-dione,
6,7,8,9,10,11,12,13,14,15-dccahydro-227/-5,25:16,21 -dimetheno-57/dipyrido[2,3-wi ;3',2'-y]pyrrolo[3,4-p][ 1,6,12]triazacycloeicosine22,24(23/7)-dione,
10-ethy 1-6,7,8,9,10,11,12,13,14,15 -decahy dro-22/7-5.25:16,21 -dimetheno57/-dipyrido[2,3-7«:3’,2'-s]pyn,olo[3,4’/?][ 1,6,12]triazacycloeicosine22,24(237/)-dione,
7,8,9,15,16,17,18-heptahydro-67/,2577-5,28:19,24-dimetheno-10,14nitrilodipyrido[2,3-6:3',2'-7]pyrrolo[3,4-e][ 1,1 Ojdiazacyclotricosine25,27(267/)-dione,
7,8,9,10,11,13,14,15,16-nonahydro-6//,23//-5,26:17,22dimethenodipyrido[2,3-6:3l,2'-6]pyn,olo[3,4-c][],10]diazacycloheneic0sinc 12,23,25 (247/)- trione,
7,8,9,11,12,13,14-heptahydro-6/7,2]/7-5,24:15,20-dimetliertc)dipyrido[2,36:3',2'-6]pyrrolo[3,4-t'][l,10]dia2acyclononadecine-10,2l,23(22T/)-trione,
-43 2017202571 19 Apr 2017
6,7,8,9,10,11,12,13,14,15-decahydro-7,14-dihydroxy-(7A147f)-22/75,25:16,21-dimetlieno-5/7-dipyrido[2,3-Z):3,,2'-/j]pyrrolo[3,4e][1,1 0]diazacyclocicosine-22,24(23/7)-dione,
6,7,9,10,12,13-hcxahydro-2077-5,23:14,19-dimetheno-5/7-dipyrido[2,3h :3',2'-«]pyiTolo[3,4-E][ 1,4,7,16]dioxadiazacyclooctadecine-20,22(21/7)dione,
6,7,10,11,12,13,15,16-octahydro-l l-(2-methoxyethyl)-23/7-5I26-metheno 17,22-nitrilo-5//,9//-dibenzo[£,(y]pyrrolo[3,4n][ 1,7,4,10,19]dioxatriazacycIoheneicosine-23,25(24/7)-dione,
6,7,10,11,12,13,15,16-octahydro-l I-(2-hydroxyethy1)-23/7-5,26:17,22dimctheno-5/7,9/7-dibenzo[A\^]pyrrolo[314n] [I,7,4,10,19]dioxatriazacycIohencicosine-23,25(24/7)-dione, and
6,7,9,10,12,13,14,15,16,17-dccahy dro-14-mcthy1-2477-5,27 :18,23dimetheno-5/7-dibenzo[/,r]pyn'olo[3,4o] [ 1,4,7,11,20] dioxatriazacycIodocosine-24,26(25/7)-dione.
|0148] An example of the invention includes a compound of Formula (III) wherein the compound is selected from the group consisting of:
Figure AU2017202571B2_D0029
Figure AU2017202571B2_D0030
Compound 1 Compound 2 Compound 5
-442017202571 19 Apr 2017
Figure AU2017202571B2_D0031
|Θ149| Other examples of the invention include a compound selected from die group consisting of:
Compound Name la To be provided
2a 3-[l-[3-[(2-hydroxyethy])methylamino]propyl]-lH-indazol-3-yl]4-[l-(3-pyridinyl)-lH-indot-3-yl]-lH-pyrrole-2,5-dione,
3a 3,5-dichloro-N-[3-chloro-4-[(3,4,32,12a-tetraliydro-IH[ 1,4]thiazino[3,4-c] [ 154]benzodiazcpin-l I (6H)yl)carbonyl]phcnyl]-benzamide,
4a 3 -[ 1 -(2-hydroxy -ethyl)-1 H-i ndo l-3-yI]-4-( 1 -pyridin-3-yl-1 H-in dol 3-yl)-pyrrole-2,5-dione,
5a 3-{2-methoxy-pheny 1)-4-(1 -pyridin-3-yl-I H-indol-3-yl)-pyrrole2,5-dione,
6a 6-[[2-[[4-(2,4-dichloropheny l)-5-(4-methy 1-1 H-imidazol-2-yl )-2pyrimidinyl]amino]ethyl]amino]-3-pyr]dinccarbonitrile,
-452017202571 19 Apr 2017
7a 3 -(5-ch loro-1 -methyl-1 H-indo l-3-yl)-4-[ 1 -(3-imidazol-l -y lpropyl)-lH-indazol-3-yl]-pyrrole-2,5-dione,
8a 3-(5-chloro- 1-methyl-I H-indol-3-yl)-4-[l-(3-[ 1,2,3 ]triazol-l-ylpropyl)-1 H-indazoI-3-yl]-pyrroIc-2,5-dione,
9a 3-[l-(3-hydiOxy-propyl)-IH-pynolo[2,3-b]pyridin-3-yl]-4-( 1methy 1-1H -pyrazol-3 -y 1 )-pyrro le-2,5-dione,
10a To be provided lla 3-[ 1 -(3-hydroxy-3-methyl-buty I)-1 H-indazol-3-yl]-4-( 1 -pyridin-3 y 1-1 H-indol-3-yl)-pyrrote-2,5-dione,
12a 3-[I-(24iydroxy-ethyl)-lH-tndazol-3-yI]-4-(l-pyrimidin-5-yl-lHtindol-3-yl)-pyrrole-2,5-dione,
13a 3 -[ I -(2-hydroxy-ethyl)-1H -in dol -3-yl]-4-( 1 -pyriraiding -yl-1Hindol-3-yl)-pyrrole-2,5-dione,
14a (] lZ)-8,9,10,13,14,l5-hexahydro-2,6:17,2Idi(metheno)pyrrolo[3,4-h][I,15,7]dioxazacyclotricosine22,24( I H,23H)-dione,
15a 3 -{5-chloro-1 -pyridin-3 -y 1-1 H-indol -3-y 1 )-4-[ 1 -(3 -hydroxypropyl)- 1 H-indazol-3-yl]-pyrroIe-2,5-dione,
16a 3-(2-methoxy-phenyl)-4-[l-(3-methoxy-propyl)-lH-pyrrolo[3,2c]pyridin-3-yl]-pyrroIe-2,5-dione,
17a 3-[l-(3-hydroxy-propyl)-lH-indazor-3-yl]-4-[ l-(tetrahydro-pyran·
-y I)-1 H-indo I -3-y I ]-pyrro le-2,5-dione,
18a 2-{3-[4-(5-chlora-1-methyl-1 H-indol-3-yl)-2,5-dioxo-2,5-dihydro
H-pyrrol-3-yl]-indazol-1 -yl} -N-(2-hydroxy-ethyl)-acetamide,
-464-(3-ch loro-phenyl )-6-(3-di methy lamino-propy I )-5,6-dihydro-4H2,4,0-triaza-cyclopenta[c]fluQiine-1,3-dione,
14-cthyl-6,7,9,10,13,14,15,16-octahydro-12H,23 H-5,26:17,22dimethenodibenzo[k,q]pyrrolof3,4n J [ 1,4,7,10,19]dioxatriazacyclohen ei cos ine-23,25 (24H)-dione,
14-benzyl-6,7,9,10,13,14,15,16-octahydro-12H.23H-5.26:17,22di(metheno)dibenzo[k,q]pyrralo[3,4n][l,4,7,10,19]dioxatriazacyclohenicosine-23,25(24H)-dione,
3-( l-{2-[2-(2-hydroxy-ethoxy)-ethoxy]-ethyl}-1 H-indol-3-yl)-4-[l (2-hydroxy-ethyl)-lH-indol-3-yI]-pyrrole-2,5-dione,
6,7,8,9,10,11,12,13-octahydro-8,1 I -dimethyl-5,23:14,19dimetheno-20H-dibenzo[k,q]pyrroIo[3,4n][ 1,4,7,10]tetraazacyclooctadeeine-20,22(21 H)-dione,
7,8,9,10,12,13,16,17,18,19-decahydro-8,17-dimethyl-15H,26H5.29:20,25-dirricthcno-6H-dibcrLzofk,q]pyrrolo[3,4n][l ,4,7,10,19,22]dioxatetraazacyclotetracosme-26,28(27H)-dione,
J 4-(2-fury lmethyl )-6.7,9,10,13,14,15,16-octahydro- 12H,23H5,26:17,22-di(metheno)dibenzo[k,q]pyrrolo[3,4n][l,4,7,10,19]dioxatriazacyclohenicosine-23,25(24H)-dione,
14-(2-thienylmethyl )-6,7,9,10,13,14,15,16-octahydro-12H.23H5 /26:17,22-di(metheno)dibenzo[k,q]pyrroto[3,4n][ 1,4,7,10,19]dioxatriazaeyclohenicosine-23,25(24H)-dione,
-472017202571 19 Apr 2017
27a 14-( 1 -naphthylmethy 1)-6,7,9,10 J 3,14,15,16-octahydro-i 2H,23H5,26:17,22-dt(metlieno)dibenzo[k,q]pyrrolo[3,4n][1,4,7,10,19]dioxatriazacyclohenicosine-23,25(24H)-dione,
28a 14-(pyridin-4-y lmethyI)-6,7,9,10,13,14,15,16-oetahydro-12H,23H5,26:17,22-di(metheno)djbenzo[k,q]pyrrolo[3,4n ][ 1,4,7,10,19]dioxatriazacyclohenicosinc-23,25(24H)-dione,
29a 3-[ I -(2-{2-[2-(1,2,3,4-tctrahydro-naphthalcn-l-ylamino)-ethoxy]ethoxy}-cthyl)-lH-indol-3-yl]-4-{ l-[2-(I,2,3,4-tetrahydronaphthalen-]-ylamino)-ethyl]- lH-indol-3-ylf-pyrrole-2,5-dionc,
30a 3-[l-(3-dimethylamino-phenyl)-lH-indol-3-yl]-4-[l-(2-bydroxye thy!1 H-indazol-3-y I] -pyrrole-2,5-dione,
31a 3-[5-cbloro-]-(6-dimethylamino-pyridin-3-yl)-]H-indol-3-y]]-4-[l(2-hydroxy-ethyl)-lH-indazol-3-yI]-pyrrole-2,5-dione, and
32a 5-i5-chloro-3-{4-[l-(2-hydroxy-ethyl}-lH-indazol-3-yi]-2,5-dioxo2,5-dihydro-IH-pyrrol-3-ylf-indol-l-yl)-nicotinic acid methyl ester.
10150| Other examples of the invention include a compound selected from the group consisting of:
-482017202571 19 Apr 2017
Figure AU2017202571B2_D0032
Compound 4a
Compound 5a
Compound 6a
Figure AU2017202571B2_D0033
Compound 7a
Compound 8a
Compound 9a
-492017202571 19 Apr 2017
Figure AU2017202571B2_D0034
Compound 16a
Compound 17a
Compound 18a
-502017202571 19 Apr 2017
Figure AU2017202571B2_D0035
Figure AU2017202571B2_D0036
Figure AU2017202571B2_D0037
Compound 19a
Figure AU2017202571B2_D0038
Figure AU2017202571B2_D0039
Figure AU2017202571B2_D0040
Compound 22a
Figure AU2017202571B2_D0041
Compound 23a
Figure AU2017202571B2_D0042
Compound 25 a
Compound 26a
Figure AU2017202571B2_D0043
-51 2017202571 19 Apr 2017
Figure AU2017202571B2_D0044
Compound 3 J a
Compound 32a
Cells suitable for treatment according to the methods of the present invention [0151] Pluripotent cells, suitable for use in the present invention express at least one of the following pluripotency markers selected from the group consisting of: ABCG2, cripto, FoxD3, Connexin43, Connexin45, Oct4, SOX-2, Nanog, hTERT, UTF-1, ZFP42, SSEA3, SSEA-4, Tral-60, and TraI-81.
[0152] 1 n one embodiment, the pluripotent cells are embryonic stem cells. In an alternate embodiment, the pluripotent cells are cells expressing pluripotency markers derived from embryonic stem cells. In one embodiment, the embryonic stem cells are human.
-52Isolation, expansion and culture of human embryonic stem cells
2017202571 19 Apr 2017 [0153)
10154] [0155] [01561
Characterization of human embryonic stem cells: Human embryonic stem cells may express one or more of the stage-specific embryonic antigens (SSEA) 3 and 4, and markers detectable using antibodies designated Tra-1-60 and Tra-1-81 (Thomson etal., Science 282:1145, 1998). Differentiation of human embryonic stem cells in vitro results in the loss of SSEAA, Tra- ] -60, and Tra-1 -81 expression (if present) and increased expression of SSEA-1. Undifferentiated human embryonic stem cells typically have alkaline phosphatase activity, which can be detected by fixing the cells with 4% paraformaldehyde, and then developing with Vector Red as a substrate, as described by the manufacturer (Vector Laboratories, Burlingame Calif.) Undifferentiated pluripotent stem cells also typically express Oct-4 and TERT, as detected by RT-PCR.
Another desirable phenotype of propagated human embryonic stem cells is a potential to differentiate into cells of all three germinal layers: endoderm, mesoderm, and ectoderm tissues. Pluripotency of human embryonic stem cells can be confirmed, for example, by injecting cells into SCID mice, fixing the teratomas that form using 4% paraformaldehyde, and then examining them histologically for evidence of cell types from the three germ layers. Alternatively, pluripotency may be determined by the creation of embryoid bodies and assessing the embryoid bodies forthe presence of markers associated with the three germinal layers.
Propagated human embryonic stem cell lines may be karyotyped using a standard Gbanding technique and compared to published karyotypes of the corresponding primate species. It is desirable to obtain cells that have a normal karyotype, which means that the cells are euploid, wherein al] human chromosomes are present and not noticeably altered.
Sources of human embryonic stem cells: Types of human embryonic stem cells that may he used include established lines of human embryonic cells derived from tissue formed after gestation, including pre-embryonic tissue (such as, for example, a blastocyst), embryonic tissue, or fetal tissue taken any time during gestation, typically but not necessarily before approximately 10-12 weeks gestation. Non-limiting examples are
-53 2017202571 19 Apr 2017 established lines of human embryonic stem cells or human embryonic germ cells, such as, for example the human embryonic stem cell lines Hl, H7, and H9 (WiCell). Also contemplated is use of the compositions of this disclosure during the initial establishment or stabilization of such cells, in which case the source cells would be primary pluripotent cells taken directly from the source tissues. Also suitable arc cells taken from a pluripotent stem cell population already cultured in the absence of feeder cells. Also suitable are mutant human embryonic stem cell lines, such as, for example, BGOI v (BresaGen, Athens, GA).
10157) In one embodiment. Human embryonic stem cells are prepared as described by Thomson etai. (U.S. Pat. No. 5,843,780, Science 282:1145, 1998; Curr. Top, Dev. Biol. 38:133 ff„ 1998; Proc. Natl. Acad. Sci. H.S.A. 92:7844, 1995).
|015Sj Culture of human embryonic stem cells: In one embodiment, human embryonic stem cells are cultured in a culture system that is essentially free of Feeder cells, but nonetheless supports proliferation of human embryonic stem cells without undergoing substantial differentiation. The growth of human embryonic stem cells in feeder-free culture without difFerentiation is supported using a medium conditioned by culturing previously with another cell type. Alternatively, the growth of human embryonic stem cells in feeder-free culture without differentiation is supported using a chemically defined medium.
[0159) In an alternate embodiment, human embryonic stem cells are initially cultured layer of feeder cells that support the human embryonic stem Cells in various ways. The human embryonic are then transferred to a culture system that is essentially free of feeder cells, but nonetheless supports proliferation of human embryonic stem cells without undergoing substantial differentiation.
[01601 Examples of conditioned media suitable for use in the present invention are disclosed in US20020072117, US6642048, W02005014799, and Xu et al (Stem Cells 22: 972-980, 2004).
-542017202571 19 Apr 2017
101611 An example of a chemically defined medium suitable for use in the present invention may be found in US2007001001 L |0162| Suitable culture media may be made from the following components, such as, for example, Dulbecco's modified Eagle's medium (DMEM), Gibco # 11965-092; Knockout Dulbecco's modified Eagle's medium (KO DMEM), Gibco # 10829-018; Ham's F12/50% DMEM basal medium; 200 mM L-glutamine, Gibco # 15039-027; non-essential amino acid solution, Gibco 11140-050; β- mercaptoetbanol, Sigma # M7522; human recombinant basic fibroblast growth factor (bFGE), Gibco # 13256-029.
|01631 1 n one embodiment, the human embryonic stem cells are plated onto a suitable culture substrate that is treated prior to treatment according to the methods of the present invention, tn one embodiment, the treatment is an extracellular matrix component, such as, for example, those derived from basement membrane or that may form part of adhesion molecule receptor-ligand couplings. In one embodiment, a the suitable culture substrate is Matrigel® (Becton Dickenson), Matrigel® is a soluble preparation from Engelbreth-Holm-Swarm tumor cells that gels at room temperature to form a reconstituted basement membrane,
101641 Other extracellular matrix components and component mixtures are suitable as an alternative. This may include laminin, fibronectin, proteoglycan, entactin, heparan sulfate, and the like, alone or in various combinations.
10165| The human embryonic stem cells are plated onto the substrate in a suitable distribution and in the presence of a medium that promotes cell survival, propagation, and retention of the desirable characteristics. All these characteristics benefit from careful attention to the seeding distribution and can readily be determined by one of skill in the art.
Isolation, expansion and culture ol cells expressing pluripotency markers that are derived from human embryonic stem cells [0166] In one embodiment, cells expressing pluripotency markers are derived from human embryonic stem cells by a method comprising the steps of:
-552017202571 19 Apr 2017 |0167| |0168)
10169] |0170|
a. Culturing human embryonic stem cells,
b. Differentiating the human embryonic stem cells into cells expressing markers characteristic of definitive endoderm cells, and
c. Removing the cells, and subsequently culturing them under hypoxic conditions, on a tissue culture substrate that is not pre-treated with a protein or an extracellular matrix prior to culturing the cells.
In one embodiment, cells expressing pturipotency markers are derived from human embryonic stem cells by a method comprising the steps of:
a. Culturing human embryonic stem cells, and'
b. Removing the cells, and subsequently culturing them under hypoxic conditions, on a tissue culture substrate that is not pre-treated with a protein or an extracellular matrix.
Cell culture under hypoxic conditions on a tissue culture substrate that is not pretreated with a protein or an extracellular matrix
In one embodiment, the cells are cultured under hypoxic conditions, on a tissue culture substrate that is not coated with an extracellular matrix for about 1 to about 20 days. In an alternate embodiment, the cells are cultured under hypoxic conditions, on a tissue culture substrate that is not coated with an extracellular matrix for about 5 to about 20 days. In an alternate embodiment, the cells are cultured under hypoxic conditions, on a tissue culture substrate that is not coated with an extracellular matrix for about 15 days.
In one embodiment, the hypoxic condition is about 1% Cf to about 20% Cf. In an alternate embodiment, the hypoxic condition is about 2% Cf to about 10% Cf. In an alternate embodiment, the hypoxic condition is about 3% Cf.
The cells may be cultured, under hypoxic conditions on a tissue culture substrate that is not pre-treated with a protein or an extracellular matrix, in medium containing serum, activin A, and a Wnt ligand. Alternatively, the medium may also contain IGF-1,
-562017202571 19 Apr 2017 |0171| |0172|
10173)
10174J |01751
10176) [01771
The culture medium may have a serum concentration in the range of about 2% to about
5%. In an alternate embodiment, the serum concentration may be about 2%.
Activin A may be used at a concentration from about 1 pg/ml to about 1 00pg/ml. In an alternate embodiment, the concentration may be about 1 pg/ml to about 1 pg/ml. In another alternate embodiment, the concentration may be about 1 pg/ml to about [OOng/ml In another alternate embodiment, the concentration may be about 50ng/ml to about 1 OOng/ml. In another alternate embodiment, the concentration may be about 1 OOng/ml.
The Wnt ligand may be selected from the group consisting of Wnt-1, Wnt-3a, Wnt-5a and Wnt-7a. In one embodiment, the Wnt ligand is Wnt-1. In an alternate embodiment, the Wnt ligand is Wnt-3a.
The Wnt ligand may be used at a concentration of about 1 ng/ml to about lOOOng/ml. In an alternate embodiment, the Wnt ligand may be used at a concentration of about IQng/ml to about 1 OOng/ml. In one embodiment, the concentration of the Wnt ligand is about 20ng/ml.
1GF-1 may be used at a concentration of about 1 ng/ml to about 1 OOng/ml. In an alternate embodiment, the IGF-lmay be used at a concentration of about lOng/ml to about lOOng/ml. In one embodiment, the concentration of IGF-I is about 50ng/ml.
The cells expressing pluripotency markers derived by the methods of the present invention are capable of expansion in culture under hypoxic conditions, on tissue culture substrate that is not pre-treated with a protein or an extracellular matrix.
The cells expressing pluripotency markers derived by the methods of the present invention express at least one of the following pluripotency markers selected from the group consisting of: ABCG2, cripto, FoxD3. Connexin43, Cortnexin45, Oct4, SOX-2, Nanog, hTERT, UTF-1, ZFP42, SSEA-3, SSEA-4, Tral-60, and Tral-81.
Further differentiation of cells expressing markers characteristic of the definitive endoderm lineage
-572017202571 19 Apr 2017
101781 Cells expressing markers characteristic of the definitive endoderm lineage may he differentiated into cells expressing markers characteristic of the pancreatic endoderm lineage by any method in the art.
10179] For example, cells expressing markers characteristic of the definitive endoderm lineage may be differentiated into cells expressing markers characteristic of the pancreatic endoderm lineage according to the methods disclosed in D’Amour etal, Nature Biotechnology 24, 1392 - 1401 (2006).
101801 For example, cells expressing markers characteristic of the definitive endoderm lineage are further differentiated into cells expressing markers characteristic of the pancreatic endoderm lineage, by treating the cells expressing markers characteristic of the definitive endoderm Uncage with a fibroblast growth factor and KAAD-cyclopamine, then removing the medium containing the fibroblast growth factor and KAAD-cyclopamine and subsequently culturing the cells in medium containing retinoic acid, a fibroblast growth factor and KAAD-cyclopamine. An example of this method is disclosed in D’ Amour et al, Nature Biotechnology, 24: 1392-1401, (2006).
|(I1811 Markers characteristic of the pancreatic endoderm lineage are selected from the group consisting of Pdxl, HNF-lbeta, PTFla, HNF-6, HB9 and PROX1, Suitable for use in the present invention is a cell that expresses at least one of the markers characteristic of the pancreatic endoderm lineage. In one aspect of the present invention, a cell expressing markers characteristic of the pancreatic endoderm lineage is a pancreatic endoderm cell.
Further differentiation of cells expressing markers characteristic of the pancreatic endoderm lineage
10182J Cells expressing markers characteristic of the pancreatic endoderm lineage may be differentiated into cells expressing markers characteristic of the pancreatic endocrine lineage by any method in the art.
[0183] For example, cells expressing markers characteristic of the pancreatic endoderm lineage may be differentiated into cells expressing markers characteristic of the pancreatic
-582017202571 19 Apr 2017 endocrine lineage according to the methods disclosed in D1 Amour at ai. Nature Biotechnology 24, 1392 - 1401 (2006).
|0184| Markers characteristic of the pancreatic endocrine lineage are selected from the group consisting of NGN-3, NeuroD, Islet-1, Pdx-1, NKX6.1, Pax-4, Ngn-3, and PTF-1 alpha. In one embodiment, a pancreatic endocrine cell is capable of expressing at least one of the following hormones: insulin, glucagon, somatostatin, and pancreatic polypeptide. Suitable for use in the present invention is a cell that expresses at least one of the markers characteristic of the pancreatic endocrine lineage. In one aspect of the present invention, a cell expressing markers characteristic of the pancreatic endocrine lineage is a pancreatic endocrine cell. The pancreatic endocrine cell may be a pancreatic hormone expressing cell. Alternatively, the pancreatic endocrine cell may be a pancreatic hormone secreting cell.
101851 In one aspect of the present invention, the pancreatic endocrine cell is a cell expressing markers characteristic of the β cell lineage. A cell expressing markers characteristic of the β cell lineage expresses Pdxl and at least one of the following transcription factors: NGN-3, Nkx2.2, Nkx6.1, NeuroD. Isl-1, HNF-3 beta. MAFA, Pax4, and Pax6. In one aspect of the present invention, a cell expressing markers characteristic of the β cell lineage is a β cell.
Detection of cells expressing markers characteristic of the definitive endoderm linage |0186| Formation of cells expressing markers characteristic of the definitive endoderm lineage may be determined by testing for the presence of the markers before and after following a particular protocol. Pluripotent stem cells typically do not express such markers. Thus, differentiation of pluripotent cells is detected when cells begin to express them.
|0187| The efficiency of differentiation may be determined by exposing a treated cell population to an agent (such as an antibody) that specifically recognizes a protein marker expressed by cells expressing markers characteristic of the definitive endoderm lineage.
-592017202571 19 Apr 2017 [0188| Methods for assessing expression of protein and nucleic acid markers in cultured or isolated cells are standard in the art. These include quantitative reverse transcriptase polymerase chain reaction (RT-PCR), Northern blots, in situ hybridization (see, e.g., Current Protocols in Molecular Biology (Ausubel et al., eds, 2001 supplement)), and immunoassays such as immunohistochemical analysis of sectioned material, Western blotting, and for markers that are accessible in intact cells, flow cytometry analysis (FACS) (see, e.g., Harlow and Lane, Using Antibodies: A Laboratory Manual, New York: Cold Spring Harbor Laboratory Press (1998)).
10189] Examples of antibodies useful for detecting certain protein markers are listed in Table IA. It should be noted that alternate antibodies directed to the same markers that are recognized by the antibodies listed in Table IA are available, or can be readily developed. Such alternate antibodies can also be employed for assessing expression of markers in the cells isolated in accordance with the present invention.
|0190] For example, characteristics of pluripotent stem cells are well known to those skilled in the art, and additional characteristics of pluripotent stem cells continue to be identified. Pluripotent stem cell markers include, for example, the expression of one or more of the following: ABCG2, cripto, FoxD3, Connexin43, Connexin45, Oct4, Sox2, Nanog, hTERT, UTF-l, ZFP42, SSEA-3, SSEA-4, Tral-60, Tral-81.
|01911 After treating pluripotent stem cells with the methods of the present invention, the differentiated cells may be purified by exposing a treated cell population to an agent (such as an antibody) that specifically recognizes a protein marker, such as CXCR4, expressed by cells expressing markers characteristic of the definitive endoderm lineage.
Detection of cells expressing markers characteristic of the pancreatic endoderm linage [01921 Markers characteristic of the pancreatic endoderm lineage are well known to those skilled in the art, and additional markers characteristic of the pancreatic endoderm lineage continue to be identified. These markers can be used to confirm that the cells treated in accordance with the present invention have differentiated to acquire the properties
-602017202571 19 Apr 2017 characteristic of the pancreatic endoderm lineage. Pancreatic endoderm lineage specific markers include the expression of One or more transcription factors such as, for example,
Hlxh9, PTF-la, PDX-I, HNF-6, HNF-lbeta.
10193J The efficiency of differentiation may be determined by exposing a treated cell population to an agent (such as an antibody) that specifically recognizes a protein marker expressed by cells expressing markers characteristic of the pancreatic endoderm lineage.
[0194| Methods for assessing expression of protein and nucleic acid markers in cultured or isolated cells are standard in the art. These include quantitative reverse transcriptase polymerase chain reaction (RT-PC'R), Northern bLots, ift situ hybridization (see, e.g., Current Protocols in Molecular Biology (Ausubel et a/., eds. 2001 supplement)), and immunoassays such as immunohistochemical analysis of sectioned material, Western blotting, and for markers that are accessible in intact cells, flow cytometry analysis (FACS) (see, e.g., Harlow and Lane, Using Antibodies: A Laboratory Manual, New York: Cold Spring Harbor Laboratory Press (1998)).
[0195] Examples of antibodies useful for detecting certain protein markers are listed in Table IA. It should be noted that alternate antibodies directed to the same markers that are recognized by the antibodies listed in Table IA are available, or can be readily developed. Such alternate antibodies can also be employed for assessing expression of markers in the cells isolated in accordance with the present invention.
Detection of cells expressing markers characteristic of the pancreatic endocrine linage |0196| Markers characteristic of cells of the pancreatic endocrine lineage are well known to those skilled in the art, and additional markers characteristic of the pancreatic endocrine lineage continue to be identified. These markers can be used to confirm that the cells treated in accordance with the present invention have differentiated to acquire the properties characteristic of the pancreatic endocrine lineage. Pancreatic endocrine lineage specific markers include the expression of one or more transcription factors such as, for example, NGN-3, NeuroD, lslet-1.
-61 2017202571 19 Apr 2017 [01971 [0198|
101991 [02001
Markers characteristic of cells of the β cell lineage are well known to those skilled in the art, and additional markers characteristic of the β cell lineage continue to be identified. These markers can be used to confirm that the cells treated in accordance with the present invention have differentiated to acquire the properties characteristic of the β-cell lineage, β cell lineage specific characteristics include the expression of one or more transcription factors such as, for example, Pdxl (pancreatic and duodenal homeobox gene-1), Nkx2.2, Nkx6.1, Isll, Pax6, Pax4, NeuroD, Hnflb, Hnf-6, Hnf-3beta, and MafA, among others. These transcription factors are well established in the art for identification of endocrine cells. See, e.g., Edlund (Nature Reviews Genetics 3: 524-632 (2002)).
The efficiency of differentiation may be determined by exposing a treated cell population to an agent (such as an antibody) that specifically recognizes a protein marker expressed by cells expressing markers characteristic of the pancreatic endocrine lineage. Alternatively, the efficiency of differentiation may be determined by exposing a treated cell population to an agent (such as an antibody) that specifically recognizes a protein marker expressed by cells expressing markers characteristic of the β cell lineage.
Methods for assessing expression of protein and nucleic acid markers in cultured or isolated cells are standard in the art. These include quantitative reverse transcriptase polymerase chain reaction (RT-PCR), Northern blots, in situ hybridization (see, e.g., Current Protocols in Molecular Biology (Ausubel et al., eds. 2001 supplement)), and immunoassays such as immunohistochemical analysis of sectioned material, Western blotting, and for markers that are accessible in intact cells, flow cytometry analysis (FACS) (see, e.g., Harlow and Lane, Using Antibodies; A Laboratory Manual, New York: Cold Spring Harbor Laboratory Press (1998)).
Examples of antibodies useful for detecting certain protein markers are listed in Table IA. It should be noted that alternate antibodies directed to the same markers that are recognized by the antibodies listed in Table IA are available, or can be readily developed. Such alternate antibodies can also be employed for assessing expression of markers in the cells isolated in accordance with the present invention.
The present invention is further illustrated, but not limited by, the following examples.
10201J
-622017202571 19 Apr 2017
Example t
Human Embryonic Stem Cell Culture
Stem cells arc undifferentiated cells defined by their ability at the single cell level to both seif-renew and differentiate to produce progeny cells, including self-renewing progenitors, non-renewing progenitors, and terminally differentiated cells. Stem cells are also characterized by their ability to differentiate in vitro into functional cells of various cell lineages from multiple germ layers (endoderm, mesoderm and ectoderm), as well as to give rise to tissues of multiple germ layers following transplantation and to contribute substantially to most, if not all, tissues following injection into blastocysts.
)0202) The human embryonic stem cell lines H1, H7 and H9 were obtained from WiCell
Research Institute, Inc.j (Madison, WI) and cultured according to instructions provided by the source institute. Briefly, cells were cultured on mouse embryonic fibroblast (MEF) feeder cells in ES cell medium consisting of DMEM/F12 (Invitrogen/GIBCO) supplemented with 20% knockout serum replacement, 100 nM MEM noncssential amino acids, 0.5 mM beta-mercaptoethanol, 2mM L-glutamine with 4ng/ml human basic Fibroblast growth factor (bFGF) (all from Invitrogen/GIBCO), MEF cells, derived from El3 to 13.5 mouse embryos, were purchased from Charles River, MEF cells were expanded in DMEM medium supplemented with 10% FBS (Hyclone), 2mM glutamine, and 100 mM MEM nonessential amino acids. Sub-confluent MEF cell cultures were treated with 10ug/ml mitomycin C (Sigma, St, Louis, MO) for 3h to arrest cell division, then trypsinized and plated at 2x 104/cm2 on 0,1 % bovine gelatin-coated dishes. MEF cells from passage two through four were used as feeder layers. Human embryonic stem cells plated on MEF cell feeder layers were cultured at 37°C in an atmosphere of 5% CO?/ within a humidified tissue culture incubator. When confluent (approximately 5-7 days after plating), human embryonic stem cells were treated with Img/ml collagenase type IV (Invitrogen/GIBCO) for 5-10 min and then gently scraped off the surface using a
5-ml pipette. Cells were spun at 900 rpm for 5 min, and the pellet was resuspended and re-plated at a 1:3 to 1:4 ratio of cells in fresh culture medium.
-63 In parallel, Hl, H7, and H9 human embryonic stem ceils were also seeded on plates coated with a 1:30 dilution of growth factor reduced MATRIGEL™ (BD Biosciences) and cultured in MEF-conditioned media supplemented with & ng/ml bFGF. The cells cultured on MATRIGEL™ were routinely passaged with collagenase IV (Invitrogen/GIBCO), Dispase (BD Bioscienccs) or Liberase enzyme (Source). Some of the human embryonic stem cell cultures were incubated under hypoxic conditions (approximately 3% O2).
2017202571 19 Apr 2017
102031 |0204|
102051 |0206]
Example 2
Derivation and Culture of Cells Expressing Pluripotency Markers, Derived from Human Embryonic Stem Cells
Cells from the human embryonic stem cell lines Hl and H9 various passages (Passage 30-54) were cultured under hypoxic conditionsi(approximatcly 3% Cf ) for at least three passages. The cells were cultured in MEF-CM supplemented with 8 ng/ml of bFGF and plated on MATRIGEL coated plates according to Example 1,
Cells were then treated with DMEM/FI2 medium supplemented with 0.5% FBS, 20 ng/ml WNT-3a (Catalog# 1324-WN-002, R&D Systems, MN), and 100 ng/ml Activin-A (R&D Systems, MN) for two days followed by treatment with DMEM/F12 media supplemented with 2% FBS and 100 ng/ml Activin-A (AA) for an additional 3 to 4 days. This protocol resulted in significant upregulation of definitive endoderm markers.
The cells were then treated with TrypLE™Express solution (Invitrogen, CA) for 5 mins. Released cells were resuspended in DMEM-F12 + 2% FBS medium, recovered by centrifugation, and counted using a hcmocytometer. The released cells were seeded at 1000-10,000 cclls/cm2on tissue culture polystyrene (TCPS) treated flasks and cultured in DMEM-F 12 + 2% FBS + 100 ng/ml activin-A + 20 ng/ml WNT-3A under hypoxic conditions (approximately 3% Cf) at 37 °C in standard tissue culture incubator. The TCPS flaks were not coated with MATRIGEL or other extarcellular matrix proteins. The media was changed daily. In some cultures, the media was further supplemented with 10-50 ng/ml of IGF-1 (insulin growth factor-f from R&D Systems, MN) or IX ITS
-642017202571 19 Apr 2017 (Insulin, transferrin, and selenium from Invitrogen, Ca). In some of the culture conditions the basal media (DM-F12 + 2% FBS) was further supplemented with 0,1 mM mcrcaptoethanol (Invitrogen, CA) and non-essential amino acids (IX, NEAA from
Invitrogen, CA),
10207] Following 5 to 15 days of culturing, distinct cell colonies appeared surrounded by a large number of enlarged cells that appear to be in senescence. At approximately 50 to 60% confluency, the cultures were passaged by exposure to TrypLE™ Express solution for 5 mins at room temperature. The released cells were resuspended in DMEM-F12 + 2% FBS medium, recovered by centrifugation, and seeded at 10,000 cells/cm2 on tissue culture polystyrene (TCPS) treated flasks in DMEM-F12 + 2%FBS + 100 ng/ml activinA + 20 ng/ml WNT-3A +/- 50 ng/ml of IGF-I. This media will be further referred to as the “growth media”.
Example 3
Derivation of Ceils Expressing Pluripotency Markers from a Single Ceil Suspension of Human Embryonic Stem Cells
10208] Cells from the human embryonic stem cell tines Hl P33 and H9 P45 were cultured under hypoxic conditions (approximately 3% O2) for at least three passages. The cells were cultured in MEF-CM supplemented with 8 ng/ml of bFGF and plated on MATRIGEL coated plates according to Example I. At approximately 60% confluency, the cultures were exposed to TrypLE ™ Express solution (Invitrogen, CA) for 5 mins. Released cells were resuspended in DMEM-FI2 + 2% FBS medium, recovered by centrifugation, and counted using a hemocytometer, The released cells were seeded at 1000 to 10,000 cells/cm2 on tissue culture polystyrene (TCPS) treated flasks and cultured in DM-F12 + 2% FBS + 100 ng/ml activin-A + 20 ng/ml WNT-3A + 50 ng/ml of IGF-I + 0.1 mM mercaptoethanol (Invitrogen, CA) and non-essential amino acids (IX, NEAA from Invitrogen, CA) under hypoxic conditions (approximately 3% O2) at 37 °C in standard tissue culture incubator. The TCPS flasks were not coated with MATRIGEL or other extarcellular matrix proteins. The media was changed daily. The first passage cells are referred to as P1.
-652017202571 19 Apr 2017
Example 4
Various Growth Media Useful for Expansion of Cells Expressing Pluripotency Markers Derived from Human Embryonic Stem Cells
10209) Cells expressing pluripotency markers derived from human embryonic stem cells have been successfully cultured in the following media compositions for at least 2-30 passages:
1. DM-F12 + 2% FBS + 100 ng/ml AA + 20 ng/ml WNT-3A
2. DM-F12 + 2% FBS + 100 ng/ml AA + 20 ng/ml WNT-3A + 50 ng/ml 1GF-1
3. DM-F12 + 2% FBS + 100 ng/ml AA + 20 ng/ml WNT-3 A + 10 ng/ml IGF-1
4. DM-F12 + 2% FBS + 50 ng/ml AA + 20 ng/ml WNT-3A + 50 ng/ml IGF-I
5. DM-F12 + 2% FBS + 50 ng/ml AA + 10 ng/ml WNT-3A + 50 ng/ml IGF-I
6. DM-F 12 + 2% FBS + 50 ng/ml AA + 20 ng/ml WNT-3A + 10 ng/ml IGF-I
7. DM-F 12 + 2% FBS + 100 ng/ml AA + 10 ng/ml WNT-3 A + 10 ng/ml IGF-I
8. HEScGRO defined media (Cbemicon, CA)
The basal component of the above listed media may be replaced with similar media such as, RPMI, DMEM, CRML, Knockout ™DMEM, and FI2.
Example 4
Effects of Inhibitors of GSK-3p Enzyme Activity on the Viability of Cells Expressing Pluripotency Markers [0210) Derivation and maintenance of cells expressing pluripotency makers was conducted as has been described in Example 2. Cells were grown in DMEM:F12 supplemented with 2% FCS (Invitrogen), 100 ng/ml Activin A, 20 ng/ml Wnt-3a, and 50 ng/ml IGF(R&D Biosystems). Cells were seeded at a density of 10,000 cells/cm“ on Falcon polystyrene
-662017202571 19 Apr 2017 flasks and grown in monolayer culture at 37CC’, 5% CO2, low oxygen. After reaching 6070% confluence, cells were passed by washing the monolayer with PBS and incubating with TrypLE (Invitrogen) for 3-5 minutes to allow detachment and single cell dispersal.
[02111 Screening was conducted using test compounds from a proprietary library of small molecules selected for their ability to inhibit GSK-3B enzyme activity. Compounds from this library were made available as 1 mM stocks, in a 96-well plate format in 50mM HEPES, 30% DMSO. For assay, cells expressing pluripotency markers were washed, counted, and plated in normal culture medium at a seeding density of 20,000 cells per well in 96-well clear-bottom, dark-well plates (Costar). This seeding density was previously determined to yield optimal monolayer formation in overnight culture. On the following day, culture medium was removed, cell monolayers were rinsed three times with PBS, and test compounds were added to the wells in 80μ1 aliquots, each diluted into assay medium at a final assay concentration of ΙΟμΜ. On day 2 of the assay, medium was removed from each well and replaced with a fresh aliquot of test compounds diluted into assay medium. Assay medium on days 1 and 2 of culture consisted of DMEM :F 12 supplemented with 0.5% FCS and 1 OOng/ml Activin A. On days 3 and 4 of culture, medium was removed from each well and replaced with DMEM:F12 supplemented with 2% FCS and 1 OOng/ml Activin A (no test compound). On day 4 of assay, 15μΙ of MTS (Promega) was added to each well and plates were incubated af 37°C for 1.5 to 4 hours prior to reading optical density at 490 nm on a SpectraMax (Molecular Devices) instrument. Statistical measures con sisting of mean, standard deviation , and coefficient of variation were calculated for each duplicate set. Toxicity was calculated for each test well relative to a positive control (wells treated with Activin A and Wnt3a on days 1 and 2 of culture).
102121 Table II is a compilation of all screening results. Cells expressing pluripotency markers were plated initially as a confluent monolayer in this assay; hence, the results are representative of a toxicity measure over the four-day culture period. Results are expressed as percentage viability of control, and demonstrate variable toxicity for some compounds at the ΙΟμΜ screening concentration used. A larger proportion of the compounds have minimal or no measurable toxicity in this cell-based assay.
-672017202571 19 Apr 2017 [02131 A small panel of select compounds was repeat tested over a narrow dose titration range, again using cells expressing pluripotency markers in a simitar assay as described above.
Table 111 is a summary of these results, demonstrating variable dose titration effects for a range of toxic and non-toxic compounds.
Example 5
Effects of Inhibitors of GSK-3fi Enzyme Activity on the Differentiation and Proliferation of Human Embryonic Stem Cells Determined using a High Content
Screening Assay [0214| Maintenance of human embryonic stem cells (H9 Line) was conducted as described in Example 1. Colonies of cells were maintained in ail undifferentiated, pluripotent state with passage on average every four days. Passage was performed by exposing cell cultures to a solution of collagenase (1 mg/ml; Sigma-Aldrich) for 10 to 30 minutes at 37°C followed by gentle scraping with a pipette tip to recover cell clusters. Clusters were allowed to sediment by gravity, followed by washing to remove residual collagenase.
Cell clusters were split at a 1:3 ratio for routine maintenance culture or a 1:1 ratio for immediate assay. The human embryonic stem cell lines used were maintained at passage numbers less than passage 50 and routinely evaluated for normal karyotypic phenotype and absence of mycoplasma contamination.
|02l5| Cell clusters used in the assay were evenly resuspended in normal culture medium and plated onto MATRIGEL-coated 96-well Packard VIEWPLATES (PerkinElmer) in volumes of ΙΟΟμΙ/welL MEF conditioned medium supplemented with 8ng/ml bFGF was used for initial plating and recovery. Daily feeding was conducted by aspirating spent culture medium from each well and replacing with an equal volume of fresh medium. Plates were maintained at 37°C, 5% CO? in a humidified box throughout the duration of assay.
|0216] Screening was conducted using test compounds from a proprietary library of small molecules selected for their ability to inhibit GSK-3B enzyme activity. Compounds from this library were made available as 1 mM stocks, in a 96-well plate format in 50mM
-682017202571 19 Apr 2017
HEPES, 30% DMSO. Screening compounds were tested in triplicate or duplicate sets. Primary screening assays were initiated by aspirating culture medium from each well followed by three washes in PBS to remove residual growth factors and serum. Test volumes of 80 to 100μ1 per well were added back containing DMEM:F12 base medium (tnvitrogen) supplemented with 0.5% FCS (HyClone) and lOOng/ml activin A (R&D Biosystems) plus 10μΜ test compound. Positive control wells contained the same base medium, substituting 10-20ng/ml Wnt3a (R&D Biosystems) for the test compound. Negative control wells contained base medium with 0.5% FCS and activin A atone (AA only) or alternatively, 0.5% FCS without activin A or Wnt3a (no treatment). Wells were aspirated and fed again with identical solutions on day 2 of assay. On days 3 and 4, all assay wells were aspirated and converted to DMEM:F12 supplemented with 2% FCS and lOOng/ml activin A (without test compound or Wnt3a); parallel negative control wells were maintained in DMEM:F12 base medium with 2% FCS and activin A (AA only) or alternatively, 2% FCS without activin A (no treatment).
|0217| At the end of culture, cells in 96-well plates were fixed with 4% paraformaldehyde at room temperature for 20 minutes, washed three times with PBS, and then permcabilized with 0.5%i Triton X-100 for 20 minutes at room temperature. Alternatively, cells were fixed with ice cold 70% ethanol overnight at -20°C, washed three times with PBS, and then permcabilized with Triton X-100 for 5 minutes at 4°C. After fixing and permeabilizing, cells were washed again three times with PBS and then blocked with 4% chicken serum (Invitragen) in PBS for 30 minutes at room temperature. Primary antibodies (goat anti-human Sox 17 and goat anti-human HNF-3beta; R&D Systems) were diluted 1:100 in 4% chicken serum and added to cells for one hour at room temperature. Alexa Fluor 488 conjugated secondary antibody (chicken anti-goat IgG; Molecular Probes) was diluted 1:200 in PBS and added after washing the cells three times with PBS. To counterstain nuclei, 5 mM Draq5 (Alexis Biochemicals) was added for five minutes at room temperature. Cells were washed once with PBS and left in 100 ml/wcll PBS for imaging.
[0218| Cells were imaged using an IN Cell Analyzer 1000 (GE Healthcare) utilizing the 51008bs dichroic for cells stained with Draq5 and Alexa Fluor 488. Exposure times were
-692017202571 19 Apr 2017 optimized using a positive control wells and wells with secondary only for untreated negative controls. Twelve fields per well were obtained to compensate for any cell loss during the treatment and staining procedures. Total cell numbers and total cell intensity for Sox-17 and HNF-3beta were measured using the IN Cell Developer Toolbox 1.6 (GE Healthcare) software. Segmentation for the nuclei was determined based on grey-scale levels {baseline range 100-300) and nuclear size. Averages and standard deviations were calculated for replicates. Total protein expression was reported as total intensity or integrated intensity, defined as total fluorescence of the cell times area of the cell. Background was eliminated based on acceptance criteria of grey-scale ranges between 300 to 3000 and form factors greater than or equal to 0.4. Total intensity data were normalized by dividing the total intensities for each well by the average total intensity for the Wnt3a/Activin A positive control. Normalized data was calculated for averages and standard deviation for each replicate set, [0219) Table IV is a representative summary of all screening results. Table V is a list of hits from this screening. Strong hits are defined as greater than or equal to 120% of control values; moderate hits are defined as falling within the interval of 60-120% of control values. A significant number of compounds induce both a proliferative response in this assay. In parallel, a significant number of compounds induce differentiation in this assay, as measured by the protein expression of Sox 17 and Hnf-3b transcription factors.
Example 6
Effects of Inhibitors of GSK-3P Enzyme Activity on the Proliferation of Human Embryonic Stem Cells Determined using a Plate Reader Assay |0220| Maintenance of human embryonic stem Cells (H9 or Η1 lines) was conducted as described in Example 1. Colonics of cells were maintained in an undifferentiated, pluripotent state with passage on average every four days. Passage was performed by exposing cell cultures to a solution of collagenase (1 mg/ml; Sigma-Aldrich) for 10 to 30 minutes at 37°C followed by gentle scraping with a pipette tip to recover cell clusters. Clusters were allowed to sediment and washed to remove residual collagenase. Cell clusters were split at a ratio of 1:3 monolayer area for routine culture or a 1:1 ratio for
- 702017202571 19 Apr 2017 [0221| |0222[ |02231 immediate assay. The human embryonis stem cell· tines used for these examples were maintained at passage numbers less than 50 and routinely evaluated for normal karyotypic phenotype as well as absence of mycoplasm contamination.
Cell clusters used in assay were evenly resuspended in norma] culture medium and plated into MATRIGEL-coatcd 96-well Packard VIEWRLATES (PerkinElmer) in volumes of I ΟΟμΙ/well. MEF conditioned medium supplemented with 8ng/ml bFGF) was used tor initial plating and recovery. Daily feeding was conducted by aspirating spent culture medium from each well and replacing with an equal volume of fresh medium. Plates were maintained at 37°C in a humidified box, 5% CO? throughout the duration of assay.
Primary screening assays were initiated by aspirating culture medium from each well followed by three washes in PBS to remove residual growth factors and serum. Test volumes of 80-100 ul per well were added back containing DMEM :F 12 base medium (Invitrogen) supplemented with 0.5% FCS (HyCJone) and lOOng/ml activin A (R&D Biosystems) and 10μΜ test compound. Positive control wells contained the same medium substituting 10-20ng/ml Wnt3a (R&D Biosystems). Negative control wells contained base medium with 0.5% FCS without activin A or Wnt3a. Screening compounds were tested in triplicate. Wells were aspirated and fed again with identical solutions on day 2 of the assay. On days 3 and 4, all assay wells were aspirated and converted to DMEM:F12 supplemented with 2% FCS and lOOng/ml activin A with the exception of negative control wells which were maintained in DMEM:FI2 base medium with 2% FCS.
On day 4 of assay, 15-20μΙ of MTS (Promega) was added to each well and plates were incubated at 37QC for 1.5 to 4 hours. Densitometric readings at OD490 were determined using a Molecular Devices spectrophotometer plate reader. Average readings for replicate sets were calculated along with standard deviation and coefficient of variation. Experimental wells were compared to the Activin A/Wnt3a positive control to calculate a percent control value as a measure of proliferation.
-71 2017202571 19 Apr 2017 |02241
I0225I [0226)
10227)
Table VI is a representative summary of all screening resuits. Table VH is a list of hits from this screening. Strong hi ts are defined as greater than or equal to 120% of control values; moderate hits are defined as falling within the interval of 60-120% of control values, A significant number of compounds induce a proliferative response in this assay.
Example 7
Effects of GSK-3p Enzyme Inhibitors on the Differentiation and Proliferation of Human Embryonic Stem Cells: Dose Titration of Lead Compounds
It was important to confirm the activity of hits identified from primary screening and further analyze the range of activity by dose titration. New samples of a selective subset of primary screening hits were obtained as dry powders, solubilized to make fresh stock reagents, and diluted into secondary confirmation assays to evaluate effects on human embryonic stem cells.
Culture of two human embryonic stem cells (Η 1 and H9) was conducted as described in Example I. Colonies of cells were maintained in an undifferentiated, pluripotent state or Matrigel™ (Invitrogen)-coated polystyrene plastic, using a 1:30 dilution of Matrigel™ in DMEM:F12 to coat the surface. Cells were split by enzymatic passage every four days on average. Passage was performed by exposing cell monolayers to a solution of collagenase (1 mg/ml; Sigma-Aldrich) for 10 to 60 minutes at 37°C followed by gentle scraping with a pipette tip to recover cell clusters. Clusters were allowed to sediment by gravity, then washed to remove residual collagenase. Celt clusters were split at a 1:3 ratio for maintenance culture or a 1:1 ratio for subsequent assay. The human embryonic stem cell lines were maintained at less than passage 50 and routinely evaluated for normal karyotypic phenotype and absence of mycoplasma contamination.
Preparation of cells for assay: Cell clusters of the Hl or H9 human embryonic stem cell lines used in the assay were evenly resuspended in culture medium and plated onto Matrigel™-coated 96-well Packard VIEWPLATES (PerkinElmer) in volumes of 1 ΟΟμΙ'/well. MEF conditioned medium supplemented with 8ng/ml bFGF was used for initial plating and expansion. Daily feeding was conducted by aspirating spent culture
-722017202571 19 Apr 2017 medium From each wel! and replacing with an equal volume of fresh medium. Cultures were allowed to expand one to three days after plating prior to initiating assay. Plates were maintained at 37°C, 5% CO2 in a humidified box for the duration of assay.
[0228] Preparation of compounds and assay medium: A subset of hits resulting from primary screening was used for follow-up study and subsequent secondary assays. Twenty compounds available as dry powders were solubilized as lOmM stocks in DMSO and stored dessicated at -20°C until use. Immediately prior to assay, compound stocks were diluted 1:1000 to make 10μΜ test compound in DMEM:F12 base medium (Invitrogen) supplemented with 0.5% FCS (HyClone) and lOOng/ml Activin A (R&D Biosystcms). This was further diluted two-fold in series to make a seven point dilution curve for each compound, also in DMEM:F12 base medium with 0.5% FCS and lOOng/ml Activin A.
10229) Secondary screening assay: Assay was initiated by aspirating culture medium from cell monolayers in each well followed by three washes in PBS to remove residual growth factors and serum. Test volumes of 100μΙ per well were added back, containing medium with 0.5% FCS and different concentrations of inhibitor compounds with lOOng/ml Activin A, without Wnt3a. Positive control wells contained the same base medium with 0.5% FCS and with 20ng/ml Wnt3a (R&D Biosystems) in the absence of test compound. Negative control wells contained the same base medium with 0.5% FCS, in the absence of Activin A, Wnt3a, or test compound. Assay wells were aspirated and fed again with identical concentrations of test compound or control solutions on day 2 of assay. On days 3 and 4, all assay wells were aspirated and fed with DMEM:F12 supplemented with 2% FCS and lOOng/ml Activin A in the absence of both test compound or Wnt3a. Parallel negative control wells were maintained on days 3 and 4 in DMEM:F12 base medium with 2% FCS.
|0230] Assay evaluation: At the end of culture, cells in 96-well plates were washed twice with PBS then fixed with 4% paraformaldehyde at room temperature for 20 minutes, washed three times more with PBS, and then permeabilized with 0.5% Triton X-I00 for 20 minutes at room temperature. After fixing and permeabilizing, cells were washed again three times with PBS and then blocked with 4% chicken serum (Invitrogen) in PBS for
- 73 2017202571 19 Apr 2017 minutes at room temperature. Primary antibodies (goat anti-human Sox!7; R&D Systems) were diluted 1:100 in 4% chicken serum and added to the cells for one hour at room temperature. Alexa Fluor 488 conjugated secondary antibody (chicken anti-goat IgG; Molecular Probes) was diluted 1:200 in PBS and added to each well after washing the cells three times with PBS. To counterstain nuclei, 2gg/ml Hocchst 33342 (Invitrogen) was added for ten minutes at room temperature. Cells were washed once with PBS and left in 100 μΙ/well PBS for imaging.
|0231) Cells were imaged using an IN Cell Analyzer 1000 (GE Healthcare) utilizing the 51008bs dichrolc for cells stained with Hoechst 33342 and Alexa Fluor 488. Exposure times were optimized using positive control wells and wells stained with secondary antibody alone as an untreated negative control. Images from 15 fields per well1 were acquired to compensate for any cell loss during the treatment and staining procedures.
Measurements for total cell number and total Sox-17 intensity were obtained for each well using IN Cell Developer Toolbox 1.7 (GE Healthcare) software. Segmentation for the nuclei was determined based on grey-scale levels (baseline range 100-300) and nuclear size. Averages and standard deviations were calculated for each replicate data set. Total Soxl7 protein expression was reported as total intensity or integrated intensity, defined as total fluorescence of the cell times area of the cell. Background was eliminated based on acceptance criteria of grey-scale ranges between 300 to 3000 and form factors greater than or equal to 0.4, Total intensity data were normalized hy dividing the total intensities for each well by the average total intensity for the Wnt3a/Activin A positive control. Normalized data were calculated for averages and standard deviations for each replicate set.
Results
10232) Results arc shown for eight GSK.-3B enzyme inhibitors where activity was confirmed and potency was determined by titration in this secondary assay. Data presented show compound effects on cell number and Sox 17 intensity where respective data points were averaged from a duplicate set and mined for each parameter from identical fields and wells. In this example, Sox 17 expression is indicative of definitive endoderm
- 742017202571 19 Apr 2017 differentiation. Results for cell number and Sox 17 intensity, respectively, using the Hl human embryonic stem cell line are shown in Tables VIII and IX. Results for the H9 human embryonic stem cell line are shown in Tables X and XI. Positive control values were normalized to 1.000 for cell number and Sox 17 intensity. Negative control values were less-than 0.388 for cell number and less-than 0.065 for Soxl7 intensity with both cell lines. A graphic portrayal of these data, comparing both human embryonic stem cell lines and including a dose titration of each compound, is provided in Figures 1 to 8. Cell number is presented in panel A; Sox 17 intensity is shown in panel B. These data confirm that each compound can promote hES cell proliferation and definitive endoderm differen tiation and identify an optimal range of activity.
Examples
Effects of GSK-3 β Enzyme Inhibitors on the Expression of Additional Markers Associated with Definitive Endoderm [0233| It was important to demonstrate that lead compounds could also induce other markers indicative of definitive endoderm differentiation, in addition to the transcription factor Sox 17. A select subset of hits was tested for their ability to promote expression of CXCR4, a surface receptor protein, and HNF-3 beta, a transcription factor also associated with definitive endoderm differentiation.
[02341 Preparation of cells for assay: Cell clusters from the Hl human embryonis stem cell line used in the assay were evenly resuspended in culture medium and plated onto MATRrGEL™-coated (1:30 dilution) 6-wcll plates (Coming) in volumes of 2 mEwell. MEF conditioned medium supplemented with 8ng/ml bFGF was used for initial plating and expansion. Daily feeding was conducted by aspirating spent culture medium from each well and replacing with an equal volume of fresh medium. Cultures were allowed to expand one to three days after plating prior to initiating assay. Plates were maintained at 37°C, 5% CO2 for the duration of assay,
10235] Preparation of compounds and assay medium: A subset of seven hits resulting from primary screening was used for follow-up study and subsequent secondary assays. Neat
-752017202571 19 Apr 2017 compounds were solubilized as LOmM stocks in DMSO and stored dessicated at -20°C until use. Immediately prior to assay, compound stocks were diluted to a final concentration ranging between ΙμΜ and 5μΜ in DMEM:Fl2 base medium (Invitrogen) supplemented with 0.5% FCS (HyCIone) and lOOng/ml Activin A (R&D Biosystems).
10236] Assay: The assay was initiated by aspirating culture medium from cell monolayers in each well followed by three washes in PBS to remove residual growth factors and serum. Test volumes of 2ml per well were added back containing medium with 0.5% FCS and different concentrations of inhibitor compounds with lOOng/ml Activin A, without Wnt3a. Positive control wells contained the same base medium and 0.5% FCS with lOOng/ml Activin A and 20ng/ml Wnt3a (R&D Biosystems) in the absence of test compound. Negative control wells contained base medium with 0.5% FCS, in the absence of Activin A, Wnt3a, or test compound. Assay wells were aspirated and fed again with identical concentrations of test compound or control solutions on day 2 of assay. On days 3 and 4, all assay wells were aspirated and fed with DMEM:FI2 supplemented with 2% FCS and lOOng/ml Activin A in the absence of both test compound or Wnt3a. Parallel negative control wells were maintained on days 3 and 4 in DMEM:F12 base medium with 2% FCS,
10237] Assay evaluation: At the end of culture, cell monolayers were washed with PBS and harvested from culture plates by incubating 5 minutes with TrypLE™ Express solution (Invitrogen, CA). Cells were resuspended in MEF conditioned medium and split into two equal samples. One set of samples was further stained with various fluorescent labeled antibodies and subjected to flow cytometric (FACS) analysis. A second parallel set of samples was subjected to quantitative PCR.
|0238) Cells for FACS analysis were washed into PBS and blocked for 15 minutes at 4°C in 0. 1*25% human gamma-globulin (Sigma cat# G-4386) diluted in PBS and BD FACS staining buffer, Aliquots of cells (approximately 105 cells each) were stained for 30 minutes at 4“C with antibodies directly conjugated to a fluorescent tag and having specificity for CD9 PE (BD#555372), CD99 PE (CaItag#MHCD9904), or CXCR-4 APC (R&D Systems cat# FAB 173 A). After a series of washes in BD FACS staining buffer,
- 762017202571 19 Apr 2017 cells were stained with 7-AAD (BD# 559925) to assess viability and analyzed on a BD
FACS Array instrument (BD Biosciences), collecting at least 10,000 events. Mouse lgG|k isotype control antibodies for both PE and APC were used to gate percent positive cells.
10239] Cells For quantitative PCR were processed for RNA extraction, purification, and cDNA synthesis. RNA samples were purified by binding to a silica-gel membrane (Rneasy Mini Kit, Qiagen, CA) in the presence of an ethanol-containing, high-salt buffer followed by washing to remove contaminants. The RNA was further purified using a TURBO DNAfree kit (Ambion, Inc.), and high-quality RNA was eluted in water. Yield and purity were assessed by A260 and A280 readings on a spectrophotometer. cDNA copies were made from purified RNA using an Applied Biosystems, Inc. (ABI. CA) high capacity cDNA archive kit.
|0240| Unless otherwise staled, all reagents for real-time PCR amplification and quantitation were purchased from ABI. Real-time PCR reactions were performed using the ABI PRISM 7900 Sequence Detection System. TAQMAN UNIVERSAL PCR MASTER MIX (ABI, C A) was used with 20 ng of reverse transcribed RNA in a total reaction volume of 20 μΐ. Each cDNA sample was run in duplicate to correct for pipetting errors. Primers and FAM-labeled TAQMAN probes were used at concentrations of200 nM.
The level of expression for each target gene was normalized using a human glyceraldehyde-3-phosphate dehydrogenase (GAPDH) endogenous control previously developed by ABI, Primer and probe sets are listed as follows: CXCR4 (Hs00237052), GAPDH (4310884E), HNF3b (Hs00232764), SOX 17 (probe part # 450025, forward and reverse part # 4304971).
10241] After an initial incubation at 50°C for 2 min followed by 95°C for 10 min, samples were cycled 40 times in two stages, a denaturation step at 95°C for 15 see followed by an annealing/extension step at 60sC for 1 min. Data analysis was carried out using GENE AMP 7000 Sequence Detection System software. For each primer/probe set, a Ct value was determined as the cycle number at which the fluorescence intensity reached a specific value in the middle of the exponential region of amplification. Relative gene
-77expression levels were calculated using the comparative Ct method. Briefly, for each cDNA sample, the endogenous control Ct value was subtracted from the gene of interest
Ct to give the delta Ct value (ACt). The normalized amount of target was calculated as 2ACt, assuming amplification to he 100% efficiency. Final data were expressed relative to a calibrator sample.
2017202571 19 Apr 2017
Results [0242) Figure 9 displays the FACS analysis of percent positive cells expressing CXCR4 surface receptor after treatment with various GSK3 inhibitors. Two concentrations of each compound, ranging between 1 uM and 5μΜ, are shown relative to an untreated population of cells (negative control) or cells treated with Activin A and Wnt3 (positive control). Figure 10 panels a, b, anti c show real-time PCR data for CXCR4, Sox 17, and HNF3beta, which are also considered to be markers of definitive endoderm. Both FACS and real-time PCR analysis demonstrate a significant increase in each of these markers observed in differentiated cells relative to untreated control cells. Expression levels of these definitive endoderm markers were equivalent in some cases to the positive control, demonstrating that a GSK3 inhibitor can substitute for Wnt3a at this stage of differentiation.
Example 9
Effects of GSK-33 Enzyme inhibitors on the Formation of Pancreatic Endoderm
10243| It was important to demonstrate that treatment with GSK.3P inhibitors during induction of definitive endoderm did not prevent the subsequent differentiation of oilier cell types, such as pancreatic endoderm, for example. A select subset of hits was tested for their ability to promote expression of PDX1 and HNF6, key transcription factors associated with pancreatic endoderm.
[»2441 Maintenance of human embryonic stem cells (Hl and H9 lines) was conducted as described in Example 1. Colonies of cells were maintained in an undifferentiated, pluripotent state with passage on average every four days. Passage was performed by
-782017202571 19 Apr 2017 exposing cell cultures to a solution of collagenase (1 mg/ml; Sigma-Aldrich) for 10 to 30 minutes at 37°C, followed by gentle scraping with a pipette tip to recover cell clusters. Clusters were allowed to sediment by gravity, followed by washing to remove residual collagenase. Cell clusters were split at a 1:3 ratio for routine maintenance culture or a 1:1 ratio for subsequent assay. The human embryonic stem cell lines used were maintained at less than passage 50 and routinely evaluated for normal karyotypic phenotype and absence of mycoplasma contamination.
[0245) Cell preparation of assay: Cell clusters of the Η1 human embryonis stem cell line used in the assay were evenly resuspended in culture medium and plated onto MATR1GEL™coated (1:30 dilution) 24-welJ plates (black well; Arctic White) in volumes of 1 ml/well. MEF conditioned medium supplemented with 8ng/ml bFGF was used for initial plating and expansion, in a second experiment, clusters of hES celts from the H9 line were plated in 96-well plates on mouse embryonic feeder (MEF) layers, previously inactivated by treating with mitomycin C (Sigma Chemical Co), Culture medium for hES cells on MEF monolayers consisted of DMEM:FI2 with 20% Knockout Serum Replacer (Invitrogen) supplemented with minimal essential amino acids (Invitrogen), L-glutamine, and 2-mercaptoethanol. Daily feeding was conducted by aspirating spent culture medium from each well and replacing with an equal volume of fresh medium. Cultures were allowed to expand one to three days after plating prior to initiating assay. Plates were maintained at 37°C, 5% CO2 for the duration of assay.
10246) Preparation of compounds and assay medium: A subset of eight hits resulting from primary screening was used for follow-up study and subsequent secondary assays. Neat compounds were solubilized as lOmM stocks in DMSO and stored dessicated at 20°C until use. Immediately prior to assay, compound stocks were diluted to a final concentration ranging between 1 liM and 5μΜ in base medium with additives, [0247) Assay: In this assay, GSK3 inhibitors were included only on days 1 and 2 of the definitive endoderm differentiation step, substituting for Wnt3a. Embryonic stem cell cultures on MATRIGEL™ were initiated as described in Examples 7 and 8 above by aspirating culture medium from cell monolayers in each welt followed by three washes in
- 792017202571 19 Apr 2017
PBS to remove residual growth factors and serum. For differentiation to definitive endoderm, test volumes (0.5 ml per well for 24-well plates, 100 μΙ per well for 96-well plates) were added containing DMEM:F12 medium with ) 0.5% FCS and different concentrations of inhibitor compounds with 100 ng/ml Activin A, without Wnt3a.
Positive control wells contained the same base medium with 0.5% FCS and with 1 OOng/ml Activin A and 20ng/ml Wnt3a (R&D Biosystems) in the absence of test compound. Negative control wells contained the same base medium with 0.5% FCS, in the absence of Activin A, Wnt3a, or test compound. Assay wells were aspirated and fed again with identical concentrations of test compound or control solutions on day 2 of assay. On days 3 and 4, all assay wells were aspirated and fed with DMEM:F12 supplemented with 2% FCS and lOOng/ml Activin A in the absence of both test compound or Wnt3a. Parallel negative control wells were maintained on days 3 and 4 in DMEM:F12 base medium with 2% FCS. For differentiation to pancreatic endoderm, cells were treated for three days, feeding daily with DMEM:F12 base medium containing 2% FCS with 0.25 μΜ KAAD cyclopamine (EMD Biosciences) and 20 ng/ml FGF7 (R&D Biosystems). Cells were then treated for an additional four days, feeding daily with DMEM:F12 containing 1% B27 (lnvitrogen), 0.25 μΜ KAAD cyclopamine, 2 μΜ Retinoic Acid (RA; Sigma-AIdrich) and 20 ng/ml’FGF7, Parallel negative control wells were maintained throughout in DMEM:F12 base medium with 2% FCS (stage 2) or 1% B27 (stage 3) and without any other additives, |0248| Parallel cultures of H9 human embryonic cells were grown on MEF feeder layers, and differentiated to pancreatic endoderm. Definitive endoderm differentiation was achieved by culturing the cells in medium consisting of RPMI-1640 (lnvitrogen) containing no serum on day 1 and 0.2% FCS on days 2 and 3 along with different concentrations of inhibitor compounds and 100 ng/ml Activin A. Positive control wells contained the same base medium (with or without serum) with 1 OOng/ml Activin A and 20ng/ml Wnt3a (R&D Biosystems) in the absence of test compound. Negative control wells contained the same base medium with or without serum, in the absence of Activin A, Wnt3a, or test compound. Assay wells were aspirated and fed again with identical concentrations of test compound or control solutions on day 2 of assay. On day 3, all assay welts were
- 802017202571 19 Apr 2017 aspirated and fed with RPMI-1640 supplemented with 2% FCS and lOOng/ml Activin A in the absence of both test compound and Wnt3a. Parallel negative control wells were maintained on day 3 in RPMI-1640 base medium with 2% FCS. Cells were differentiated into pancreatic endoderm by treating the cells for four days, feeding daily with RPMI-1640 base medium containing 2% FCS with 0.25 mM KAAD cyelopaminc (EMD Biosciences) and 50 ng/ml FGF 10 (R&D Biosystems). Subsequently, cells were treated for three days duration, feeding daily with RPMI-1640 containing 1% B27 (Invitrogen), 0.25 mM KAAD cyclopamine, 2 mM Retinoic Acid (RA; Sigma-Aldrich) and 50 ng/ml FGF10. Parallel negative control welts were maintained throughout in RPMI-1640 base medium with 2% FCS (stage 2) or 1% B27 (stage 3) and without any other additives.
10249| Assay evaluation: At the end the differentiation, cells were examined as described in Example 8 for gene expression by real-time PCR. For high content fluorescence staining, cells in 96-well plates were washed twice with PBS then fixed with 4% paraformaldehyde at room temperature for 20 minutes, washed three times more with PBS, and then permeabilized with 0.5% Triton X-l 00 for 20 minutes at room temperature. After fixing and permeabilizing, cells were washed again three times with PBS and blocked with 4% chicken serum (Invitrogen) in PBS for 30 minutes at room temperature. Primary antibody (goat anti-human Pdxl; Santa Cruz) was diluted 1:100 in 4% chicken serum and added to cells for two hours at room temperature. Alexa Fluor 488 conjugated secondary antibody (chicken anti-goat IgG; Molecular Probes) was diluted 1:200 in PBS and added to each well after washing the cells three times with PBS. To counterstain nuclei, 2gg/ml Hoechst 33342 (Invitrogen) was added for ten minutes at room temperature. Cells were washed once with PBS and left in 100 μΙ/well PBS for imaging.
10250| Cells were imaged using an IN Cell Analyzer 1000 (GE Healthcare) utilizing the 51008bs diehroic for cells stained with Hoechst 33342 and Alexa Fluor 488. Exposure times were optimized using positive control wells and wells stained with secondary antibody alone. Images from 15 fields per well were acquired to compensate for any cell toss during the treatment and staining procedures. Measurements for total cell number and total Pdx 1
- 81 2017202571 19 Apr 2017 intensity were obtained for each well using IN Cell Developer Toolbox 1.7 (GE Healthcare) software. Segmentation for the nuclei was determined based on grey-scale levels (baseline range 100-300) and nuclear size. Averages and standard deviations were calculated for each replicate data set. Total Pdx 1 protein expression was reported as total intensity or integrated intensity, defined as total fluorescence of the cell times area of the cell. Background was eliminated based on acceptance criteria of grey-scalc ranges between 300 to 3000. Total intensity data were normalized by dividing the total intensities for each well by the average total intensity for the Wnt3a/Activin A positive control. Normalized data were calculated for averages and standard deviations for each replicate set.
|02511 Cells for quantitative PCR were lysed in RLT buffer (Qiagen) and then processed for RNA extraction, purification, and cDNA synthesis. RNA samples were purified by binding to a silica-gel membrane (Rneasy Mini Kit, Qiagen, CA) in the presence of an ethanol-containing, high-salt buffer followed by washing to remove contaminants. The RNA was further purified using a TURBO DNA-free kit (Ambion, inc,), and high-quality RNA was then eluted in water. Yield and purity were assessed by A260 and A280 readings on a spectrophotometer. cDNA copies were made from purified RNA using an Applied Biosystems, Inc, (AB1, C'A) high capacity cDNA archive kit.
10252) Unless otherwise stated, all reagents for real-time PCR amplification and quantitation were purchased from AB1. Real-time PCR reactions were performed using the AB1 PRISM 7900 Sequence Detection System. TAQMAN UNIVERSAL PCR MASTER MIX was used with 20 ng of reverse transcribed RNA in a total reaction volume of 20 μΙ. Each cDNA sample was run in duplicate to correct for pipetting errors. Primers and FAM-labcled TAQMAN probes were used at concentrations of 200 nM. The level of expression for each target gene was normalized using a human glyceraldehyde-3phosphate dehydrogenase (GAPDH) endogenous control previously developed by AB1. Primer and probe sets are listed as follows: PDX1 (Hs00236830__ml), GAPDH (4310884E), and HNF6 (Hs00413554_ml).
- 822017202571 19 Apr 2017
10253) [02541
I0255J
After an initial incubation at 50QC for 2 min followed by 95CC for 10 min, samples were cycled 40 times in two stages, a denaturation step at 95 °C for 15 sec followed by an annealing/extension step at 60°C for 1 min. Data analysis was carried out using GENEAMP0700G Sequence Detection System software, For each primcr/probe set, a Ct value was determined as the cycle number at which the fluorescence intensity reached a specific value in tire middle of the exponential region of amplification. Relative gene expression levels were calculated using the comparative Ct method. Briefly, for each cDNA sample, the endogenous control Ct value was subtracted from the gene of interest Ct to give the delta Ct value (ACt). The normalized amount of target was calculated as 2ACt, assuming amplification to be ] 00% efficiency. Final data were expressed relative to a calibrator sample.
Results
Results are shown for eight GSK.-3p enzyme inhibitors. Data presented in Figure 11 from high content analysis show effects on cell number (panel A) and Pdxl intensity (panel B) for the Hl hES cell line, where respective data points were averaged from a duplicate sample set and mined for each parameter from identical fields and wells. Data presented in Figure 12 from real-time PCR show effects of these small molecule inhibitors on induced expression of two transcription factors, Pdxl and HNF6. In these examples, Pdxl and HNF6 expression are indicative ofpanereatic endoderm differentiation. GSK33 inhibitor compounds in these assays can substitute for Wnt3a during early stages of cell lineage commitment; resulting cells sustain a capacity to form pancreatic endoderm during later sequential stages of differentiation.
Example 10
Effects of GSK-30 Enzyme Inhibitors on the Formation of Pancreatic Endocrine Cells
It was important to demonstrate that treatment with GSK3 inhibitors during induction of definitive endoderm did not prevent the subsequent differentiation of other cell types.
- 83 2017202571 19 Apr 2017 such as pancreatic endocrine cells, or insulin producing celts, for example. A select subset of hits was tested for their ability to promote expression of pancreatic hormones.
10256J Cell preparation far assay: Pancreatic endoderm cells obtained according to the methods described in Example 9 (cultured on 96-wellplates and 24-wcll plates) were subsequently subjected to agents that cause the cells to differentiate into pancreatic hormone expressing cells.
|0257] Assay for cultures of the Η1 human embryonic stem cell line on MATRIGEL™ was initiated as described in Examples 7-9 above by aspirating culture medium from cell monolayers in each well followed by three washes in PBS to remove residual growth factors and serum. For differentiation to definitive endoderm, test volumes (0.5 ml per well for 24-well plates, 100 μΙ per well for 96-well plates) were added containing medium with 0.5% FCS and different concentrations of inhibitor compounds with 100 ng/ml Activin A, without Wnt3a. Positive control wells contained the same base medium and 0.5% FCS with lOOng/ml Activin A and 20ng/mI Wnt3a (R&D Biosystems) in the absence of test compound. Negative control wells contained the same base medium with 0.5% FCS, in the absence of Activin A, Wnt3a, or test compound. Assay wells were aspirated and fed again with identical concentrations of test compound or control solutions on day 2 of assay. On days 3, 4, and 5, all assay wells were aspirated and fed with DMEM:FI2 supplemented with 2% FCS and lOOng/ml Activin A in the absence of both test compound or Wnt3a. Parallel negative control welts were maintained on days 3, 4, and 5 in DMEM:F12 base medium with 2% FCS. For differentiation to pancreatic endoderm, cells were treated for three days, feeding daily with DMEM:F12 base medium containing 2% FCS with 0.25 μΜ KAAD cyclopamine (EMD Biosciences) and 20 ng/ml FGF7 (R&D Biosystems). Cells were subsequently treated for four days, feeding daily with DMEM:F 12 containing 1% B27 (Invitrogen), 0.25 μΜ KAAD cyclopamine, 2 μΜ Retinoic Acid (RA; Sigma-Aldrich) and 20 ng/ml FGF7. Parallel negative control wells during stages 2 and 3 were maintained throughout in DMEM:F12 base medium with 2% FCS or 1 % B27 and without any other additives. After formation of pancreatic endoderm, cells were treated further for six days duration, feeding daily with DMEM:F12 base medium containing 1% B27 with 1 μΜ DAPT (gamma secretase inhibitor: EMD
- 842017202571 19 Apr 2017
Biosciences) and 50 ng/ml Exendin 4 (Sigma-Aldrich). Cells were then treated for another three days duration, feeding daily with DMEM:FI2 base medium containing 1%
B27, 50 ng/ml Exendin 4, 50 ng/ml IGF (R&D Biosystems) and 50 ng/ml HGF (R&D
Biosystems). Parallel negative control wells were maintained throughout in DMEM;F12 base medium with 1% B27 and without any other additives.
10258J Assay evaluation: At the end of culture, cells were treated as in Examples 7 and 8 above for evaluation by high content analysis or real-time,PCR.
|02591 For high content fluorescence staining, cells in 96-well plates were washed twice with PBS then fixed with 4% paraformaldehyde at room temperature for 20 minutes, washed three times more with PBS, and then permeabilized with 0.5% Triton X-100 for 20 minutes at room temperature. After fixing and permeabilizing, cells were washed again three times with PBS and blocked with 4% chicken serum (Invitrogen) in PBS for 30 minutes at room temperature. Primary antibody (guinea pig anti-swine insulin, crossreactive with human insulin; DakoCytomation) was diluted 1:500 in 4% goat serum and added to cells for one hour at room temperature. Cells were washed three times with PBS and then stained with Alexa Fluor 488 conjugated secondary antibody (goat antiguinea pig IgG; Molecular Probes) diluted 1:100 in 4% goat serum, To counterstain nuclei, 2,ug/ml Hoechst 33342 (Invitrogen) was added for ten minutes at room temperature. Cells were washed once with PBS and left in 100 μΙ/well PBS for imaging.
10260) Cells were imaged using an IN Cell Analyzer 1000 (GE Healthcare) utilizing the 51008bs dichroic for cells stained with Hoechst 33342 and Alexa Fluor 488. Exposure times were optimized using positive control wells and wells stained with secondary antibody alone. Images from 15 fields per well were acquired to compensate for any cell loss during the treatment and staining procedures. Measurements for total cell number and total insulin intensity were obtained for each well using IN Cell Developer Toolbox 1,7 (GE Healthcare) software. Segmentation for the nuclei was determined based on grey-scale levels (baseline range 100-300) and nuclear size. Averages and standard deviations were calculated for each replicate data set. Total insulin protein expression was reported as total intensity or integrated intensity, defined as total fluorescence of the cell times area
-852017202571 19 Apr 2017 of the cell. Background was eliminated based on acceptance criteria of grey-scale ranges between 300 to 3000. Total intensity data were normalized by dividing the total intensities for each well by the average total intensity for the Wnt3a/Activin A positive control, Normalized data were calculated for averages and standard deviations for each triplicate set.
[02611 Cells for quantitative PCR were lysed in RLT buffcr(Qiagen) and then processed for RNA extraction, purification, and cDNA synthesis. RNA samples were purified by binding to a silica-gel membrane (Rneasy Mini Kit, Qiagen, CA) in the presence of an ethanol-containing, high-salt buffer followed by washing to remove contaminants. The RNA was further purified using a TURBO DNA-free kit (Ambion, INC), and highquality RNA was eluted in water. Yield and purity were assessed by A260 and A280 readings on a spectrophotometer. cDNA copies were made from purified RNA using an Applied Biosystems, Inc. (ABl, CA) high capacity cDNA archive kit.
[0262) Unless otherwise stated, all reagents for real-time PCR amplification and quantitation were purchased from ABL Real-time PCR reactions were performed using the ABl PRISM® 7900 Sequence Detection System. TAQMAN® UNIVERSAL PCR MASTER ΜIX® (ABl, CA) was used with 20 ng of reverse transcribed RNA in a total reaction volume of 20 μΙ. Each cDNA sample was run in duplicate to conect for pipetting errors. Primers and FAM-labcled TAQMAN®probes were used at concentrations of 200 nM. The level of expression for each target gene was normalized using a human glyceraldehyde-3-phosphate dehydrogenase (GAPDH) endogenous control previously developed by ABl. Primer and probe sets are listed as follows: PDX1 (Hs00236830_m1), Insulin (Hs00355773), and GAPDH (4310884E).
102631 After an initial incubation at 50cC for 2 min followed by 95°C for 10 min, samples were cycled 40 times in two stages, a denaturation step at 95°C for 15 sec followed by an anneal ing/ex tension step at 60°C for 1 min. Data analysis was carried out using GENEAMP®7000 Sequence Detection System software. For each primer/probe set, a Ci value was determined as the cycle number at which the fluorescence intensity reached a specific value in the middle of the exponential region of amplification, Relative gene
- 86expression levels were calculated using the comparative Ct method. Briefly, for each cDNA sample, the endogenous control Ct value was subtracted from the gene of interest
Ct to give the delta Ct value (ACL). The normalized amount of target was calculated as 2' Λ°, assuming amplification to be 100% efficiency. Final data were expressed relative to a calibrator sample.
2017202571 19 Apr 2017
Results [0264| Results are shown for eight GSK-3B enzyme inhibitors. Data presented in Figure 13 from high content analysis show compound effects on cell number (panel A) and insulin intensity (panel B) forthe Hl hES cell line where respective data points were averaged from a triplicate set and mined for each parameter from identical fields and wells. Data presented in Figure 14 from real-time PCR show compound effects for Pdxl and insulin In these examples, Pdxl and insulin expression are indicative of pancreatic endoderm differentiation and generation of hormonal positive cells. Selective GSK3p inhibitor compounds in these assays can substitute for Wnt3a during early stages of cell lineage commitment and can induce and sustain pancreatic beta cell formation during later sequential stages of differentiation, as evident from both insulin immunostaining and real-time PCR.
Example 11
Additive Effects of GSK-3P Enzyme Inhibitors on the Formation of Pancreatic Endocrine Cells
It was important to demonstrate that treatment with GSKJp inhibitors could improve pancreatic beta cell differentiation if added during multiple phases of cell fate commitment. A select subset of hits was tested by sequential timed addition to enhance insulin expression associated with pancreatic hormonal positive cells.
Preparation ofcells far assay: Cell preparation far assay: Pancreatic endoderm cells obtained according to the methods described in Example 9 and Id (cultured on 96- 872017202571 19 Apr 2017 wellplates) were subsequently subjected to agents that cause the cells to differentiate into pancreatic hormone expressing cells.
Assay for cultures of the Hl human embryonic stem cell line on MATRIGEL™ was initiated as described in Examples 7-9 above by aspirating culture medium from cell monolayers in each well followed by three washes in PBS to remove residual growth factors and serum. For differentiation to definitive endoderm, test volumes ¢100 μΙ per well for 96-well plates) were added containing medium with 0,5% FCS and different concentrations of inhibitor compounds with 100 ng/ml Activin A, without Wnt3a.
Positive control wells contained the same base medium and 0.5% FCS with 1 OOng/ml Activin A and 20ng/ml Wnt3a (R&D Biosystems) in the absence of test compound. Negative control wells contained the same base medium with 0.5% FCS, in the absence of Activin A, Wnt3a, or test compound. Assay wells were aspirated and fed again with identical concentrations of test compound or control solutions on day 2 of assay. On days 3,4, and 5, all assay wells were aspirated and fed with DMEM:FI2 supplemented with 2% FCS and 1 OOng/ml Activin A in the absence of both test compound or Wnt3a.
Parallel negative control wells were maintained on days 3, 4, and 5 in DMEM:FI2 base medium with 2% FCS. For differentiation to pancreatic endoderm, cells were treated for three days, feeding daily with DMEM:F12 base medium containing 2% FCS with 0.25 μΜ KAAD cyclopamine (EMD Biosciences) and 20 ng/ml FGF7 (R&D Biosystems). Cells were subsequently treated for four days, feeding daily with DMEM:F12 containing 1% B27 (Invitrogen), 0.25 μΜ KAAD cyclopamine, 2 μΜ Retinoic Acid (RA; SigmaAldrich) and 20 ng/ml FGF7, Parallel negative control wells were maintained throughout in DMEM:F12 base medium with 2% FCS or 1% B27 and without any other additives. After formation of pancreatic endoderm, cells were treated further for six days duration, feeding alternating days with DMEM:F 12 base medium containing 1% B27 with I μΜ DAPT (gamma sccrctase inhibitor; EMD Biosciences) and 50 ng/ml Excndin 4 (SigmaAldrich) and 1 μΜ TGFbeta RI inhibitor II (ALK5 inhibitor; EMD Biosciences). During this six day period, GSK3P inhibitors were added back to respective wells, using the same concentration as previous treatment at the initiation of differentiation. Cells were then treated for another three days duration, feeding alternating days with DMEM :F 12
-882017202571 19 Apr 2017 base medium containing 1% B27, 50 ng/ml Exendin 4, 50 ng/ml IGF (R&D Biosystems) and 50 ng/ml HGF (R&D Biosystems), and 1 μΜ TGFbeta Rl inhibitor II (ALK5 inhibitor; EMD Biosciences). During this three day period, GSK3P inhibitors were added back to respective wells, using the same concentration as previous treatment at the initiation of differentiation. Parallel sets of positive control wells were treated in the presence or absence of 20ng/ml Wnt3a. Parallel negative control wells were maintained throughout in DMEM:F12 base medium with 1% B27 and without any other additives.
10265] Assay evaluation: At the end of culture, cells were treated as in Examples 10 above for evaluation by high content analysis,
10266] For high content fluorescence staining, cells in 96-well plates were washed twice with
PBS then fixed with 4% paraformaldehyde at room temperature for 20 minutes, washed three times more with PBS, and then permeabilized with 0.5% Triton X-100 for 20 minutes at room temperature. After fixing and permeabilizing, cells were washed again three times with PBS and blocked with 4% chicken scrum (Invitrogen) in PBS for 30 minutes at room temperature. Primary antibody (guinea pig anti-swine insulin, crossreactive with human insulin; DakoCytomation) was diluted 1:500 in 4% goat scrum and added to cells for one hour at room temperature. Cells were washed three times with PBS and then stained with Alexa Fluor 488 conjugated secondary antibody (goat anti guinea pig IgG; Molecular Probes) diluted 1:100 in 4% goat serum. To counterstain nuclei, 2pg/ml Hoechst 33342 (Invitrogen) was added for ten minutes at room temperature. Cells were washed once with PBS and left in 100 ul/well PBS for imaging.
10267] Cells were imaged using an IN Cell Analyzer 1000 (GE Healthcare) utilizing the 51008bs dichroic for cells stained with Hoechst 33342 and Alexa Fluor 488. Exposure times were optimized using positive control wells and wells stained with secondaiy antibody alone. Images from 15 fields per well were acquired to compensate for any cell loss during the treatment and staining procedures. Measurements for total cell number and total insulin intensity were obtained for each well using IN Cell Developer Toolbox 1,7 (GE Healthcare) software. Segmentation for the nuclei was determined based on grey-scale levels (baseline range 100-300) and nuclear size. Averages and standard deviations were
- 892017202571 19 Apr 2017 calculated for each replicate data set. Total insulin protein expression was reported as total intensity or integrated intensity, defined as total fluorescence of the cell times area of the cell. Background was eliminated based on acceptance criteria of grey-scale ranges between 300 to 3000. Total intensity data were normalized by dividing the total intensities for each well by the average total intensity for the Wnt3a/Activin A positive control, Normalized data were calculated for averages and standard deviations for each triplicate set.
Results
1112681 Results are shown for eight GSK.-3B enzyme inhibitors. Data presented in Figure 15 from high content analysis show compound effects on cell number (panel A) and insulin intensity (panel B) for the Hl hES cell line, where respective data points were averaged from a triplicate set and mined for each parameter from identical fields and wells. In this example, insulin expression is indicative of differentiation to hormonal positive pancreatic cells. Selective GSK.3P inhibitor compounds in these assays can substitute for Wnt3a during early stages of cell lineage commitment and, when added at later stages of differentiation, appear to promote enhanced insulin expression relative to a positive control sample.
[0269] Publications cited throughout this document are hereby incorporated by reference in their entirety. Although the various aspects of the invention have been illustrated above by reference to examples and preferred embodiments, it will be appreciated that the scope of the invention is defined not by the foregoing description but by the following claims properly construed under principles of patent law.
-902017202571 19 Apr 2017
Table IA: List of primary antibodies used for FACS and immunostaimninganalysis.
Antibody Supplier I so type Clone
SSEA-1 Chemicon (CA) Mouse IgM MC-480
SSEA-3 Chemicon (CA) Mouse lgG3 MC-631
SSEA-4 Chemicon (CA) Rat IgM MC-813-70
TRA 1-60 Chemicon (CA) Mouse IgM TRA 1-60
TRA 1-81 Chemicon (CA) Mouse IgM TRA 1-81
TRA 1-85 Chemicon (CA) Mouse IgGl TRA 1-85
AP R&D Systems Mouse IgGl B4-78
HNF3p R&D Systems Goat IgG
PDX1 Santa Cruz Biotechnology, INC Goat tgG A-l 7
GATA4 R&D Systems Goat IgG
Sox 17 R&D Systems Goat IgG
CD 9 BD Mouse IgGl M-L 13
-91 Table lb: List of secondary conjugated antibodies used for FACS and immunostainininganalysis.
2017202571 19 Apr 2017
Secondary Conjugated Antibody Supplier Dilution
Goat Anti-Mouse IgG APC conjugated Jackson ImmunoResearch (PA) 1:200
Goat Anti-Mouse IgG PE conjugated Jackson ImmunoResearch (PA) 1:200
Donkey anti-rabbit PE or- APC conjugated Jackson ImmunoResearch (PA) 1:200
Donkey anti-goat PE or — APC conjugated Jackson ImmunoResearch (PA) 1:200
Goat anti-mouse IgM PE SouthemBiotech (AL) 1:200
Goat anti-Rat IgM PE SouthemBiotech (AL) 1:200
Goat anti-mouse IgG3 PE SouthemBiotech (AL) 1:200
-92Table II: Effects of Inhibitors of GSK.-3B Enzyme Activity on the Viability of Cells
Expressing Pluripotency Markers.
2017202571 19 Apr 2017
Raw data (duplicate) Average S.D. % cv % Control
JNJ5226780 0.785 0.790 0.788 0.00382 0.48 94.0
JNJ10179026 0.148 0.152 0.150 0.00247 1.65 4.8
JNJ17154215 0.427 0.462 0.444 0.02496 5.62 46.0
JNJ17205955 0.643 0.638 0.641 0.00368 0.57 73.5
JNJ180125 0.762 0.762 0.762 0.00007 0.01 90.4
JNJ18157546 0.850 0.824 0.837 0.01824 2.18 101.0
JNJ19370026 0.911 0.884 0.898 0.01881 2.10 109.5
JNJ19567340 0.723 0.743 0.733 0.01421 1.94 86.4
JNJ7830433 0.161 0.169 0.165 0.00559 3.39 6.9
JNJ10179130 0.767 0.789 0.778 0.01556 2.00 92.6
JNJ17154215 0.512 0.555 0.533 0.03048 5.72 58.4
JNJ17205955 0.282 0.293 0.288 0.00792 2.75 24.1
JNJ18014061 0.764 0,723 0.743 0.02892 3.89 87.9
JNJ18157698 0.853 0.858 0.855 0.00382 0.45 103.5
JNJ19376240 0.832 0.837 0.834 0.00361 0.43 100.6
JNJ195674O5 0.726 0.725 0.725 0.00042 0.06 85.3
JNJ8706646 0.132 0.137 0.134 0.00368 2.74 2.6
JNJ10182562 0.797 0.793 0.795 0.00346 0.44 95.1
JNJ17157659 0.776 0.787 0.782 0.00792 1.01 93.2
JNJ17205994 0.164 0:148 0.156 0.01131 7.24 5.6
JNJ18014074 0.475 0.383 0.429 0.06548 15.26 43.8
JNJ18157698 0.823 0.774 Q.79B 0.03444 4.31 95.8
JNJ19386042 0.781 0.729 0.755 0.03649 4.83 89.5
JNJ19573541 0.143 0.149 0.146 0.00396 2.72 4.2
JNJ8710481 0.716 0.716 0.716 0.00014 0.02 84.1
JNJ10182562 0.804 0.802 0.803 0.00148 0.18 96.2
JNJ17163042 0.900 0.877 0.888 0.01626 1.83 108.2
JNJ17226703 0.824 0.799 0.812 0.01725 2.13 97.4
JNJ18018338 0.744 0.819 0.781 0.05261 6.73 93.2
JNJ18157711 0.952 0.966 0.959 0.00933 0.97 118.1
JNJ19410833 0.952 0.919 0.935 0.02277 2.43 114.8
JNJ19574867 0.776 0.777 0.777 0.00042 0.05 92.5
JNJ8710481 0.691 0.617 0.654 0.05254 8.03 75,4
JNJ10184655 0.162 0.134 0.148 0.02022 13.66 4.5
JNJ10166565 0.791 0.608 0.700 0.12947 18.50 81.8
JNJ17982133 0.153 0.129 0.141 0.01676 11.87 3.5
JNJ18018351 0.731 0.585 0.658 0.10317 15.68 75.9
DMSO 0.789 0.700 0.744 0.06279 8.44 88Ό
JNJ19410859 0.909 0.675 0.792 0.16546 20.88 94.7
JNJ19574880 0.164 0.151 0.157 0.00926 5.89 5.8
JNJ10148307 0.706 0.672 0.689 0.02404 3.49 83.9
-93 2017202571 19 Apr 2017
JNJ10222784 0.641 0.601 0.621 0.02878 4.63 73.7
JNJ17174664 0.882 0.748 0.815 0.09504 11.66 102.5
JNJ17989049 0.822 0.802 0.812 0.01400 1.72 102.1
JNJ18047991 0.777 0,764 0.771 0.00919 1.19 95.9
DMSO 0,798 0.771 0.735, 0.01916 2.44 98.0
JNJ19410872 0.791 0.789 0.790 0.00134 0.17 98.7
JNJ20948798 0.628 0.640 0.634 0.00806 1,27 75.6
JNJ10164830 0.149 0.135 0.142 0.00969 6.81 2.7
JNJ10222927 0.803 0.782 0.792 0.01492 1.88 99.1
JNJ17187027 0.125 0.129 0.127 0.00318 2.51 0.4
JNJ17994873 0.315 0.542 0.428 0.15995 37.34 45.2
JNJ18055726 0.820 0.748 0.784 0.05091 6.49 97.9
JNJ18157711 0.154 0.165 0.160 0.00806 5.05 5.3
JNJ19558929 0.737 0.730 0.734 0.00481 0.66 90.4
JNJ21192730 0,659 0.647 0.653 0.00813 1,25 78.5
JNJ10164895 0.165 0.154 0.159 0.00785 4.93 5.2
JNJ10231273 0.637 0.554 0.595 0.05876 9.87 69.9
JNJ17187053 0.684 0.588 0.636 0.06809 10.71 76.0
JNJ17994899 0.750 0.624 0.687 0.08945 13.02 83.5
JNJ18077800 0.678 0.618 0.648 0.04285 6.61 77.8
JNJ19363357 0.777 0.667 0.722 0.07757 10.74 88.7
DMSO 0.799 0.649 0.724 0.10564 14.59 89.0
JNJ21194667 0.648 0.625 0.636 0.01662 2.61 76.0
JNJ10172058 0.601 0.620 0.611 0.01308 2.14 72.2
JNJ10259847 0.695 0.702 0.698 0.00552 0.79 85.2
JNJ17193774 0.568 0.709 0.639 0.09956 15.59 76.4
JNJ17994912 0.623 0.765 0.694 0.10041 14.46 84.6
JNJ18157074 0.758 0.762 0.760 0.00297 0.39 94.3
JNJ19369233 0.487 0.434 0.461 0,03769 8.18 49.9
JNJ19567314 0,690 0.686 0.688 0.00262 0.38 83.7
JNJ21196227 0.535 0.550 0.543 0.01089 2.01 62.1
JNJ10178727 0.743 0.638 0.691 0.07446 10.78 84.1
JNJ10259847 0.694 0.603 0.649 0.06449 9.94 77.8
JNJ17200976 0,160 0,186 0.173 0.01824 10.56 7.2
JNJ17994925 0.662 0.566 0.614 0.06788 11.05 72.7
JNJ18157087 0.600 0.514 0.557 0.06102 10.96 64.2
JNJ19369246 0,685 0.524 0.605 0.11427 18.90 71.3
JNJ19567327 0.731 0.525 0.628 0.14552 23.18 74.7
JNJ24843611 0.715 0.596 0.655 0.08436 12.87 78.8
JNJ24843611 0.592 0.572 0.582 0.01393 2.39 70.0
JNJ25758785 0.614 0.611 0.613 0.00177 0.29 74.6
JNJ26064571 0.766 0.849 0.807 0.05869 7.27 104,3
JNJ26130403 0.830 0.813 0.822 0.01195 1.45 106.5
JNJ26170794 0.727 0.730 0.728 0.00198 0.27 92.2
JNJ26241774 0.713 0.836 0.774 0.08733 11,28 99.3
JNJ26367991 0.726 0.719 0.722 0.00523 0.72 91.3
JNJ26483310 0.646 0.681 0.663 0,02510 3.78 82.4
-942017202571 19 Apr 2017
JNJ243261B5 0.651 0.649
JNJ25758850 0.642 0.622
JNJ26067626 0.843 0.672
JNJ26134771 0.734 0.815
JNJ26J70820 0,823 0.743
JNJ26241917 0.871 0.874
JNJ26714220 0.652 0.642
JNJ26483223 0.617 0.633
JNJ24843572 0.657 0.555
JNJ25758863 0.684 0.809
JNJ26067652 0.901 0.735
JNJ26150202 0.791 0.768
JNJ26170833 0.948 0,764
JNJ2G2432O4 0.821 0.608
JNJ26399906 0.745 0.685
JNJ26483236 0.624 0.618
JNJ24843585 0.652 0.624
JNJ25873419 0.773 0.662
JNJ26069901 0.856 0.834
JNJ26153647 0.828 0.800
JNJ26177086 0.821 0.841
JNJ26247143 0.816 0.787
JNJ26399906 0.744 0.737
JNJ26483249 0.699 0.679
JNJ25753520 0.186 0.208
JNJ25887537 0.665 0.699
JNJ26077883 0.810 0.683
JNJ26158015 0.141 0.162
DMSO 0.784 0.605
JNJ26248729 0.726 0.590
JNJ26399945 0.635 0.620
JNJ26483249 0.697 0.695
JNJ25753403 0.154 0.153
JNJ25900641 0.616 0.645
JNJ22791671 0.909 0.830
JNJ26158054 0.150 0.150
JNJ26177762 0.981 1.056
JNJ26261105 0.166 0.189
JNJ26399971 0.718 0.451
JNJ26483262 0.652 0.647
JNJ25757173 0.503 0.529
JNJ25900654 0,603 0.609
JNJ26116922 0.856 0.793
JNJ26893438 0.883 0.848
JNJ26184457 0.779 0.784
JNJ26361712 0.892 0.914
JNJ263999S4 0.544 0.537
0.650 0.00120 0.19 80.3
0.632 0.01407 2.23 77.5
0.758 0.12099 15.97 96.7
0.774 0.05728 7.40 99.3
0.783 0.05699 7.28 100.6
0.872 0.00219 0.25 114.2
0.647 0.00721 1.12 79.8
0.625 0.01174 1.88 76.5
0.656 0.00134 0.20 81.2
0.746 0.08803 11.80 95.0
0.818 0.11731 14.34 106.0
0.779 0.01591 2.04 100.1
0.856 0.12982 15.17 111.7
0.714 0.15033 21.05 90.1
0.715 0.04243 5.94 90.2
0.621 0.00417 0.67 76.0
0.638 0.01916 3.00 78.5
0.718 0.07792 10.86 90.6
0.845 0.01570 1.86 110.1
0.814 0.02008 2.47 105.4
0.831 0.01421 1.71 108.0
0.802 0.02072 2.58 103.5
0.741 0.00453 0.61 94.1
0.689 0.01464 2.12 86.3
0.197 0.01541 7.83 11.3
0.682 0.02432 3.57 85.2
0.746 0.09030 12.10 95.0
0.151 0.01506 9.95 4.3
0.695 0.12671 18.25 87.1
0.658 0.09624 14.63 81.5
0.628 0.01068 1.70 76.9
0.696 0.00113 0.16 87.3
0.154 0.00042 0.28 4.5
0.630 0.02072 3.29 82.1
0.869 0.05614 6.46 121.0
0.150 0.00028 0.19 3.9
1.018 0.05303 5.21 145.3
0.177 0.01626 9.19 8.3
0.584 0.18887 32.34 74.6
0.649 0.00389 0.60 85.2
0.516 0.01860 3.61 63.5
0.606 0.00424 0.70 78.1
0.824 0.04419 5.36 113.7
0.866 0.02503 2.89 120.5
0.781 0.00368 0.47 106.7
0.903 0.01591 1.76 126.6
0.540 0.00460 0.85 67.5
-952017202571 19 Apr 2017
JNJ265119O1 0.532 0.682 0.607 0.10543 17.37 78.3
JNJ25757173 0.665 0.645 0.655 0.01400 2.14 86.1
JNJ25900706 0.676 0.677 0.677 0.00035 0.05 89.7
JNJ26120601 0.935 0.807 0.871 0.09115 10.47 121.3
JNJ26158093 0.916 0.859 0.887 0.03981 4.49 124.0
JNJ26219050 0.907 0.891 0.899 0.01124 1.25 125.9
JNJ26361725 0.909 0.896 0.902 0.00919 1.02 126.4
JNJ26399997 0.682 0.797 0.740 0.08118 10.98 99.9
JNJ26511927 0.679 0.644 0.661 0.02510 3.80 87.2
JNJ25757238 0.300 0.223 0.261 0.05452 20.88 22.0
JNJ26047723 0.183 0.175 0.179 0.00573 3.20 8.6
JNJ26120614 0.741 0.728 0.734 0.00884 1.20 99.1
JNJ26158106 0,935 0,906 0.921 0.02051 2.23 129.4
JNJ26219063 0.131 0.128 0.129 0.00212 1.64 0.5
JNJ26366730 0.138 0.137 0.138 0,00092 0.67 1.9
JNJ26400049 0.241 0.227 0.234 0.01032 4.41 17.6
JNJ26941226 0.604 0.639 0.622 0.02475 3.98 80.7
JNJ257587O7 0.247 0.182 0.215 0.04617 21.52 14.4
JNJ26054912 0.659 0.634 0.647 0.01718 2.66 84.8
JNJ26128726 0.758 0.575 0.667 0.12961 19.44 88.1
JNJ26161343 0.166 0.170 0.168 0.00276 1.64 6.9
JNJ26220454 0.651 0.559 0.605 0.06541 10.81 78.0
JNJ26367991 0.803 0.694 0.748 0.07693 10.28 101.3
JNJ26483197 0.823 0.634 0.728 0.13378 18.37 98.1
JNJ26511953 0.624 0.618 0.621 0.00431 0.69 80.6
RWJ351001 0.639 0.603 0.621 0.02553 4.11 73.6
RWJ382867 0.143 0.149 0.146 0.00403 2.76 2.9
RWJ682205 0.817 0.818 0.818 0.00071 0.09 102.8
RWJ665862 0,742 0.752 0.747 0.00679 0.91 92.2
RWJ670804 0.856 0.905 0.881 0.03479 3.95 112.1
RWJ673829 0.650 0.576 0.613 0.05268 8.59 72.4
RWJ675260 0.768 0.724 0.746 0.03097 4.15 92.2
RWJ675946 0.556 0.549 0.553 0.00537 0.97 63.4
RWJ351958 0.227 0.242 0.235 0.01103 4.70 16.1
RWJ395477 0.634 0.663 0.649 0.02044 3.15 77.7
RWJ447228 0.141 0.128 0.135 0.00919 6.83 1.3
RWJ666167 0.847 0.832 0.840 0.01110 1.32 106.0
RWJ670908 0.803 0.845 0.824 0.02998 3.64 103.7
RWJ67383O 0.860 0.860 0.860 0.00035 0.04 109.1
RWJ675261 0.528 0.497 0.513 0.02227 4.34 57.5
RWJ675948 0,683 0.688 0.686 0.00332 0.48 83.1
RWJ447228 0.611 0.628 0.620 0.01202 1.94 73.3
RWJ414342 0.719 0.749 0.734 0.02143 2.92 90.3
RWJ5537Q9 0.916 0.838 0.877 0.05487 6.26 111,6
RWJ666168 0.771 0.740 0.755 0.02178 2.88 93.5
RWJ670984 0.820 0.852 0.836 0.02305 2.76 105.5
RWJ674239 0.971 0.913 0.942 0.04137 4.39 121.2
-962017202571 19 Apr 2017
RWJ67543O 0.839 0.743 0.791 0.06746 8.53 98.8
RWJ676061 0.562 0.527 0.544 0.02440 4.48 62.2
RWJ35219O 0.678 0.661 0.670 0.01195 1.78 80.8
RWJ414984 0.722 0.713 0.717 0.00658 0.92 87.9
RWJ65978O 0,802 0.801 0.802 0.00106 0.13 100.4
RWJ666205 0.854 0.857 0.855 0.00205 0.24 108.4
RWJ671232 0,767 0.798 0.782 0.02157 2.76 97.5
RWJ57424O 0.789 0.776 0.782 0.00870 1.11 97.5
RWJ675266 0,720 0.709 0.714 0.00764 1.07 87.4
RWJ676Q85 0.641 0.618 0.630 0.01619 2.57 74.9
RWJ352244 0.603 0.584 0.593 0.01372 2.31 69.4
RWJ425264 0.135 0.158 0.146 0.01633 11.18 3.0
RWJ66244O 0.792 0.572 0.682 0.15563 22.83 82.6
RWJ666213 0.752 0.593 0.673 0,11292 16.79 81.2
RWJ672667 0.805 0.598 0.702 0.14644 20.87 85.5
RWJ674241 0.599 0.504 0.552 0.06682 12.11 63.2
RWJ675366 0.714 0.593 0.654 0.08549 13.08 78.4
RWJ676137 0,699 0.698 0.698 0.00099 0.14 85.0
RWJ352628 0.690 0.674 0.682 0.01131 1.66 83-3
RWJ4252S8 0.616 0.634 0.625 0,01301 2:08 74.8
RWJ66386O 0.809 0.817 0.813 0.00552 0.68 103.0
RWJ667045 0.128 0,133 0.131 0,00361 2.76 0.7
RWJ672932 0.821 0.811 0.816 0.00721 0.88 103.4
RWJ674320 0.456 0.474 0.465 0.01223 2.63 50.8
RWJ675369 0.762 0.766 0.764 0.00304 0.40 95.7
RWJ676139 0.680 0.663 0.671 0.01195 1.78 81.8
RWJ353258 0.615 0.635 0.625 0.01400 2.24 74.8
RWJ355923 0,681 0.698 0.689 0.01266 1.84 84.5
RWJ664545 0.830 0.807 0.818 0.01584 1.94 103.8
RWJ667046 0.869 0.849 0.859 0.01442 1.68 109.9
RWJ672934 0.821 0.841 0.831 0.01428 1.72 105.7
RWJ674817 0.819 0.840 0.830 0.01485 1.79 105.5
RWJ675430 0.795 0.793 0.794 0.00078 0.10 100.1
RWJ676431 0.640 0.636 0.638 0.00283 0.44 76.7
RWJ355131 0.610 0.628 0.619 0.01266 2.05 73.9
RWJ425271 0.143 0.144 0.144 0.00035 0.25 2.6
RWJ353709 0.804 0.903 0.853 0.07000 8.20 109.0
RWJ667069 0.918 0.854 0.886 0.04483 5.06 113.9
RWJ673313 0.105 1.080 0.593 0.68971 116.37 70.0
RWJ674855 0.877 0.860 0.868 0.01209 1.39 111.3
RWJ675578 0.808 0.695 0.751 0.07941 10,57 93.8
RWJ676432 0.720 0.697 0.709 0.01648 2.33 87.3
RWJ355923 0.636 0.621 0.629 0.01054 1.68 75.4
RWJ425348 0.640 0.634 0.637 0.00474 0.74 76.6
RWJ665436 0.833 0.833 0.833 0.00000 0.00 106.0
RWJ6691S2 0.887 0.846 0.866 0.02934 3.39 111,0
RWJ673515 0.845 0.877 0.861 0.02326 2.70 110.2
-972017202571 19 Apr 2017
RWJ674855 0.794 0.784
RWJ675605 0.770 0.786
RWJ67657 0.629 0.659
RWJ356205 0.584 0.558
RWJ445224 0.707 0.679
RWJ665588 0.727 0.578
RWJ669327 0.742 0.629
DMSO 0.653 0.507
RWJ675104 0.722 0.568
RWJ675881 0.643 0.581
RWJB76639 0.608 0.590
JNJ26511966 0,597 0.610
JNJ26511979 0.687 0.668
JNJ26512005 0.840 0.832
JNJ26533065 0.831 0.822
JNJ26533091 0.863 0.856
JNJ265331O4 0,886 0.802
JNJ26533156 0.753 0.687
JNJ26714181 0.455 0.463
JNJ26714194 0,668 0.678
JNJ26714207 0.181 0.171
JNJ26714220 0.832 0.842
JNJ26875563 0.795 0.802
JNJ22791671 0.157 0.140
JNJ26893438 0.153 0.153
JNJ26941226 0.168 0.154
JNJ28572128 0.670 0.641
RWJ67694 0.706 0.679
RWJ676940 0,788 0.666
RWJ677545 0.879 0.785
RWJ678986 0.168 0.176
RWJ680665 0.946 0.848
RWJ680667 0.187 0.202
RWJ680668 0.906 0.688
RWJ680669 0.715 0.674
RWJ680858 0.695 0.700
RWJ680858 0.665 0.631
RWJ680879 0,590 0.613
RWJ680885 0,681 0.687
RWJ680991 0.829 0.821
RWJ680992 0.822 0.790
RWJ680993 0.671 0.684
RWJ681140 0.686 0.668
RWJ681142 0.212 0.197
RWJB81146 0.666 0.666
RWJ681945 0.736 0.656
RWJ68498 0.726 0.610
0.789 0.00686 0.87 99.4
0.778 0.01138 1.46 97.8
0.644 0.02128 3.30 77.7
0.571 0.01817 3.18 66.8
0.693 0.01987 2.87 85.0
0.652 0.10536 16.15 78.9
0.685 0.07969 11.63 83.8
0.580 0.10310 17.78 65.0
0.645 0.10904 16.90 77.9
0.612 0.04384 7.16 72.9
0.599 0.01245 2.08 70.9
0.603 0.00926 1.54 71.2
0.677 0.01336 1.97 82.4
0.836 0.00594 0.71 106.1
0.826 0.00587 0.71 104.7
0.860 0.00509 0.59 109.7
0.844 0.05954 7.05 107.3
0.720 0.04660 6.47 88.8
0.459 0.00587 1.28 49.6
0.673 0.00764 1.13 81.7
0.176 0.00658 3.74 7.2
0.837 0,00658 0.79 106.3
0.798 0.00445 0.56 100.5
0.148 0.01202 8.11 3.0
0.153 0.00035 0.23 3.7
0.161 0.00969 6.02 4.9
0.655 0.02079 3.17 79.1
0.693 0.01888 2.73 84.7
0.727 0.08627 11.86 89.8
0.832 0.06640 7.98 105.6
0.172 0.00537 3.13 6.6
0.897 0.06972 7.77 115.3
0.194 0.01089 5.61 9.9
0.797 0.15394 19.31 100.3
0.694 0,02850 4.10 84.9
0.697 0.00339 0.49 85.3
0.648 0,02369 3.66 78.0
0.601 0.01655 2.75 71.0
0,684 0.00382 0.56 83.3
0.825 0.00530 0.64 104.5
0.806 0.02270 2.82 101.6
0.677 0.00912 1.35 82.3
0.677 0.01266 1.87 82.3
0.204 0.01047 5.12 11.5
0.666 0.00007 0,01 80.7
0.696 0.05643 8.11 85.1
0.668 0.08217 12.30 81.0
-982017202571 19 Apr 2017
JNJ28850601 0.303 0.310 0.306 0,00488 1.59 26.7
DMSO 0.786 0.659 0.722 0.09001 12.46 89.1
DMSO 0.673 0.649 0.661 0.01676 2.53 79.9
DMSO 0.701 0.686 0.693 0.01D11 1.46 84.8
-99Table III: Effects oflnhibitors oFGSK-3B Enzyme Activity on the Viability of Cells
Expressing Pluripotency Markers,
2017202571 19 Apr 2017
cmpd cone (uM) Raw data (duplicate) Average S.D. %cv % Control
EXPRES 01 medium 0.6379 0.6180 0.6280 0.0141 2.2 74.6
no treatment 0.7412 0.7038 0.7225 0.0264 3.7 88.7
AAonly 0.7674 0.8047 0.7861 0.0264 3.4 98.3
AA + Wnt3a 0.7754 0,8200 0.7977 0.0315 4.0 100.0
JNJ26512005 10 0.1412 0.1515 0.1464 0.0073 5.0 2.4
JNJ26512005 5 0.1501 0.1444 0.1473 0.0040 2.7 2.5
JNJ26512005 2.5 0.1541 0.4254 0.2898 0,1918 66.2 23.9
JNJ26533065 10 0.1272 0.1282 0.1277 0.0007 0.6 -0.4
JNJ26533065 5 0.5862 0.5880 0.5871 0.0013 0.2 68.4
JNJ26533065 2.5 0.7613 0.7603 0.7608 0.0007 0.1 94.5
JNJ26533156 10 0.1481 0.15S2 0.1537 0.0078 5.1 3.5
JNJ26533156 5 0.1479 0.1639 0:1559 0.0113 7.3 3.8
JNJ26533156 2.5 0.2861 0.2477 0.2669 0.0272 10.2 20.4
JNJ26714194 10 0.2092 0.2426 0.2259 0.0236 10.5 14.3
JNJ26714194 5 0.6815 0.7128 0.6972 0.0221 3.2 84.9
JNJ26714194 2.5 0.7389 0.7870 0.7630 0.0340 4.5 94.8
JNJ26150202 10 0.1381 0.1398 0,1390 0.0012 0.9 1.3
JNJ26150202 5 0.7826 0.7578 0.7702 0.0175 2.3 95.9
JNJ26150202 2.5 0.8231 0.7742 0.7987 0.0346 4.3 100.1
JNJ26158015 10 0.1352 0.1326 0.1339 0.0018 1.4 0.5
JNJ26158015 5 0.2632 0.2604 0.2618 0.0020 0.8 19.7
JNJ26158015 2.5 0.4160 0.5314 0.4737 0.0816 17.2 51.4
RWJ670804 10 0.4447 0.4791 0.4619 0.0243 5.3 49.7
RWJ670804 5 0.6902 0.6884 0.6893 0.0013 0.2 83.8
RWJ670804 2.5 0.7476 0.7483 0.7480 0.0005 0.1 92.5
JNJ26170833 10 0.6790 0.6704 0.6747 0.0061 0.9 81.6
JNJ26170833 5 0.7833 0.7924 0.7879 0.0064 0,8 98.5
JNJ26170833 2.5 0.8155 0.8389 0.8272 0.0165 2.0 104.4
JNJ26177086 10 0.6533 0.6884 0,6709 0.0248 3.7 81.0
JNJ26177086 5 0.7697 0.7738 0.7718 0.0029 0.4 96.1
JNJ26177086 2.5 0.8119 0.8219 0.8169 0.0071 0.9 102.9
JNJ26177762 10 0.1242 0.1323 0.1283 0.0057 4.5 -0.4
JNJ26177762 5 0.1263 0,1303 0.1283 0.0028 2.2 -0.3
JNJ26177762 2.5 0.8480 0.7725 0.8103 0.0534 6.6 101.9
RWJ673515 10 0.1695 0.1890 0,1793 0.0138 7.7 7.3
RWJ673515 5 0.7217 0.7435 0.7326 0.0154 2.1 90.2
RWJ673515 2.5 0.7812 0.7221 0.7517 0.0418 5.6 93.1
EXPRES Olmedium 0.6294 0.6363 0.6329 0.0049 0.8 70.3
no treatment 0.7156 0.7356 0.7256 0.0141 1.9 83.3
AA only 0.8732 0.9046 0.8889 0.0222 2,5 106.0
AA + Wnt3a 0.8415 0.8500 0.8458 0.0060 0.7 100.0
- 1002017202571 19 Apr 2017
JNJ19370026 10 0.1403,0.1493 0.1448 0.0064 4.4 2.3
JNJ19370026 5 0.4434 0.3878 0.4156 0.0393 9.5 40.1
JNJ19370026 2.5 0.7734 0.8038 0.7886 0.0215 2.7 92.0
JNJ26483197 10 0.2993 0.3026 0.3010 0.0023 0.8 24.1
JNJ26483197 5 0.7023 0.6299 0.6661 0.0512 7,7 75.0
JNJ26483197 2.5 0.7835 0.8043 0.7939 0.0147 1.9' 92.a
RWJ675605 10 0.7205 0.7369 0,7287 0.0116 1.6 83.7
RWJ575605 5 0.7769 0.8272 0.8021 0.0356 4.4 93.9
RWJ675605 2.5 0.8214 0.8640 0.8427 0.0301 3.6 99.6
RWJ67543Q 10 0.6275 0.5980 0.6128 0.0209 3.4 67.5
RWJ67543O 5 0.7159 0.7222 0.7191 0.0045 0.6 82.3
RWJ675430 2.5 0.9245 0.9403 0.9324 0.0112 1.2 112.1
RWJ675948 10 0.7220 0.6670 0.6945 0.0389 5.6 78,9
RWJ675948 5 0.7526 0.7486 0.7506 0.0028 0.4 86.7
RWJ675948 2.5 0.7557 0.7390 0.7474 0.0118 1.6 86,3
JNJ26483249 10 0.8214 0.8636 0.8425 0.0298 3.5 99.5
JNJ264B3249 5 0.7996 0.7873 0.7935 0.0087 1.1 92.7
JNJ26483249 2.5 0.8669 0.8195 0:8432 0.0335 4.0 99.6
RWJ67657 10 0.6195 0.5908 0.6052 0.0203 3.4 66.5
RWJ67657 5 0.8047 0.8319 0.8183 0.0192 2.4 96.2
RWJ67657 2.5 0.8041 0.7900 0.7971 0.0100 1.3 93.2
RWJ676639 10 0.1261 0.1520 0.1391 0.0183 13.2 1.5
RWJ676639 5 0.1303 0.1263 0.1283 0.0028 2.2 0.0
RWJ676639 2.5 0.4482 0.4051 0.4267 0.0305 7.1 41.6
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L,O
Figure AU2017202571B2_D0048
108
2017202571 19 Apr 2017
Table VI: Effects of lnliibitors of GSK-3B Enzyme Activity on the proliferation of human embryonic stem cells.
JNJ number Raw Data Average S.D. %cv % Control
conditioned medium 1.1348 1.0099 1.1092 1,0846 0,0660 6,1 116,5
no treatment 0.9344 0.5977 0.8454 0.7925 0.1745 22.0 85.2
AA/DMSO 0.3878 0.2434 0.2252 0.2855 0.0891 31.2 30.7
AA/Wnt3a/DM5O 0.6098 1.0804 0.7635 0.8179 0.2403 25.8 100.0
RWJ351001 0.3418 0.4276 0.5751 0.4482 0.1180 26.3 48.2
RWJ351958 0.1362 0,1531 0,1532 0.1475 0.0098 6.6 15.8
RWJ352190 1.3764 1.2753 1.3208 1.3242 0.0506 3.8 142.3
RWJ3S2244 0.6923 0.5994 0.6134 0.6350 0.0501 7.9 68.2
RWJ352628 1.7896 1.4721 2.1908 1.8175 0.3602 19.8 195.3
RWJ353250 1.7591 1.6274 1.6518 1.6794 0.0701 4.2 180.4
RWJ3S5131 0.3702 0.3193 0.3368 0.3421 0.0259 7.6 36.8
RWJ355923 0.5876 0.6384 0,9154 0.7138 0.1764 24.7 76.7
RWJ3562Q5 0.3074 0.2328 0.2920 0.2774 0.0394 14.2 29.8
RWJ382867 0.1311 0.1245 0.1288 0.1281 0.0034 2.6 13.8
RWJ395477 0.1270 0.2778 0.1916 0.1988 0.0757 38.1 21.4
RWJ414342 0.2166 0.3062 0.2915 0.2714 0.0481 17.7 29.2
RWJ414934 0.4362 0.3728 0.2481 0.3524 0.0957 27.2 37.9
RWJ425Z64 0.1560 0.1481 0.1359 0.1467 0.0101 6.9 15.8
RWJ425268 0.2932 0.3883 0.6258 0.4358 0.1713 39.3 46.8
RWJ425271 0.1362 0.1479 0.1298 0.1380 0.0092 6.7 14.8
RWJ425348 0.2198 0.2159 0.2300 0.2219 0.0073 3.3 23.8
RWJ445224 0.7624 0.2705 0.2478 0.4269 0.2908 68.1 45.9
RWJ447228 0.1239 0.1233 0.1269 0.1247 0.0019 1.5 13.4
RWJ553709 0.1277 0.1254 0.6980 0.3170 0.3299 104.1 34.1
RWJ659780 0.2665 0.3215 0.2605 0.2828 0.0336 11.9 30.4
RWJ66244Q 0.2395 0.3235 0.1333 0.2321 0.0953 41.1 24.9
RWJ6638G0 0.2646 0.1873 0.1293 0.1937 0.0679 35.0 20.8
RWJW4545 0.3590 0.2790 0.1515 0.2632 0.1047 39.8 28.3
RW J665436 0.4690 0.5805 0.3349 0.4615 0.1230 26.6 49.6
JNJ number Raw Data Average S.D. %cv % Control
conditioned medium 1.1525 1.1269 1.1140 1.1311 0.0196 1,7 71.0
no treatment 1.2057 1.2358 1.3132 1.2516 0,0555 4.4 78.6
AA/DMSO 0.2622 0.2073 0.2830 0.2508 0.0391 15.6 15.8
AA/Wnt3a/DMSO 1.3943 1.7976 1.8000 1.5922 0.2136 13.4 100.0
RWJ665588 0.1930 0.2223 0,2167 0.2107 0.0156 7.4 13.2
RWJ665862 0.1757 0.1813 0,1835 0.1802 0.0040 2.2 11.3
RWJ666167 0.1473 0.1880 0.1732 0.1695 0.0206 12.2 10.6
RWJ666168 0.1330 0.1362 0.1867 0.1520 0.0301 19.8 9.5
RWJ666205 0.8191 0.5493 0.6526 0.6737 0.1361 20.2 42.3
RW J666213 0.4008 0.2779 0.3869 0.3552 0.0673 18.9 22.3
RWJ667045 0.1220 0.1248 0.1251 0.1240 0.0017 1.4 7.8
RWJ667046 0.2883 0.3308 0.5503 0.3898 0.1406 36.1 24.5
RWJG670G9 0.2835 0.4024 0.5698 0.4186 0.1438 34.4 26.3
RWJGG9t32 0.3704 0.6073 0.5280 0.5019 0.1206 24.0 31.5
RWJ6G9327 0.2266 0.1815 0.2289 0.2123 0.0267 12.6 13.3
- 1092017202571 19 Apr 2017
RWJ670804 1.0820 1.1862 1.1076 1,1253 0.0543 4.8 70,7
RWJ670908 0.3590 0.5457 0,6123 0.5057 0.1313 26Ό 31.8
RWJ670934 0.2198 0.3564 0.3202 0.2988 0.0708 23.7 18.8
RWJ671232 0.2928 0.2920 0.3659 0.3169 0.0424 13.4 19.Θ
RWJ672667 0.3349 0.3013 0.3507 0.3290 0.0252 7.7 20.7
RWJ672332 0.1852 0.1924 0.2349 0.2042 0.0269 13.2 12.8
RWJ672934 0.2170 0.3003 0.1877 0.2350 0.0584 24.9 14.8
RWJ673313 0.3094 0.2515 0.1881 0.2497 0.0607 24.3 15.7
RWJ673515 1.8452 1.7710 1.5591 1.7251 0,1485 8.6 108.3
RWJ673829 0.7305 0.7067 0.6250 0.6874 0.0553 8.0 43.2
RWJ673830 0.2113 0.1800 0.1547 0.1820 0.0284 15.6 11.4
RWJ674233 1.5225 1.5912 0.1081 1.0739 0.8371 78.0 67.4
RWJ674240 0.4006 1.2807 0.1162 0.5992 0.6071 101.3 37.6
RWJ674241 0.1972 0.1839 0.1162 0.1658 0.0434 26.2 10.4
RWJ674320 0.1351 0.1318 0.1169 0.1279 0,0097 7.6 8.0
JNJ number Raw Data Average S.D. %CV % Control
conditioned medium 1.0568 1.0604 1.0586 0.0025 0.2 71.9
no treatment 1.1544 0.9576 1.0560 0.1392 13.2 71.7
AA only * DMSO 0.6329 0.8434 0.7382 0.1488 20.2 47.1
AA + Wnt3a + DMSO 1.2704 1.8669 1.4229 0.2960 20.8 100.0
RWJ674817 1 0.5617 0.2098 0.3858 0.2488 64.5 19.9
RWJ674855 0.6850 0.5853 0.6352 0.0705 11.1 39.2
RWJ674355 0.7496 0.9187 0.8342 0.1196 14.3 54.5
RWJ675104 0.2320 0.2124 0.2222 0.0139 6.2 7.3
RWJ675260 0.8079 1.4391 1.1235 0.4463 39.7 76.9
RWJ6752G1 0.8310 0.7318 0.7814 0.0701 9.0 50.5
RWJ675Z66 1.0646 1.1384 1.1015 0.0522 4.7 75.2
RWJ675366 0.6344 1.0400 0.8372 0.2868 34.3 54.8
no cells 0.1335 0.2070 0.1703 0.0520 30.5 3.3
RWJ67S369 0.8643 0.4060 0.6352 0.3241 51.0 39.2
RWJ67543Q 1,7922 1.8533 1.8228 0.0432 2.4 130.9
RWJ67557B 0.1914 0.2371 0.2143 0.0323 15.1 6,7
RWJ675605 1.8401 1.7563 1.7982 0.0593 3.3 129.0
RWJ675881 1.0301 1.0356 1.0329 0.0039 0.4 69.9
RWJ675946 0.1306 0.1338 0.1322 0.0023 1.7 0.3
RWJ675948 1.7143 1.6506 1.6825 0.0450 2.7 120.0
RWJ6760E1 0.4170 0.4956 0.4563 0.0556 12.2 25.4
RWJ676085 0.1772 0.2348 0.2060 0.0407 19.8 6.0
RWJ676137 1.0231 1.2392 1.1312 0.1528 13.5 77.5
RWJ676139 1.9718 2.0997 2,0358 0,0904 4.4 147.3
RWJ676431 1.5168 1.6872 1.6020 0.1205 7.5 113.8
RWJG76432 1.6935 1.9710 1.8323 0,1962 10.7 131.6
RWJ67657 1.2655 1.1829 1.2242 0.0584 4.8 84.7
RWJ676639 1.3481 1.3168 1.3325 0.0221 1.7 93.0
JNJ26511966 0,6444 0.7239 0.6842 0,0562 8.2 43.0
JNJ2E511979 0.2046 0.3076 0.2561 0.0728 28.4 9.9
JNJ26512005 1.3627 1.0693 1.2160 0.2075 17.1 84.0
JN J26533065 0.8722 0.9660 0.9191 0.0663 7.2 61.1
JNJ26533091 1.0332 0.4554 0.7443 0.4086 54.9 47.6
JNJ26533104 0.8775 0.7347 0.8061 0.1010 12.5 52.4
- 1102017202571 19 Apr 2017
JNJ2653315G 1.7865 1.2008 1.4937 0.4142 27.7 105.5
JNJ26714181 0.2396 0.1584 0.1990 0.0574 28.9 5.5
JNJZ6714194 0.8122 1.0827 0.9475 0.1913 20.2 63.3
JNJ26714207 0.1342 0.1363 0.1353 0.0015 1.1 0.6
JNJ26714220 1.0462 0.5838 0.8150 0.3270 40.1 53.1
JNJ26875563 0.4586 0.2903 0.3745 0.1190 31.8 19.0
JNJ22791671 0.1277 0.1402 0.134Q 0.0088 6.6 0.5
JNJ26893438 0.1258 0.1324 0.1291 0.0047 3,6 0.1
JNJZ6941226 0.1219 0.1216 0.1218 0.0002 0.2 -0.5
JNJ28572128 0.4223 0.4721 0.4472 0.0352 7.9 24.7
JNJ2S850601 0.1514 0.1396 0.1455 0.0083 5.7 1.4
JNJ number Raw Data Average S.D. %CV % Control
conditioned medium 0.7423 0.7081 0.7252 0.0242 3,3 87.7
no treatment 0.4936 0.5689 0.5313 0.0532 10.0 59.8
AA only + DMSO 0.1433 0.1939 0.1686 0.0358 21.2 7.6
AA + Wnt3a + DMSO 0,6808 0.9406 0.8107 0.1837 22.7 100,0
JNJ17994873 0.2447 0.1331 0.1889 0.0789 41.8 10.6
JNJ17994899 0.1537 0.1302 0.1420 0.0166 11.7 3.8
no Cells 0.1163 0.1147 0.1155 0.0011 1.0
JNJ17994912 0.2994 0.2592 0,2793 0.0284 10.2 23.6
JNJ17994925 0,1353 0.2121 0.1737 0.0543 31.3 8.4
JNJ180125 0.1267 0.1419 0.1343 0.0107 8.0 2.7
JNJ18014061 0.1376 0.1676 0.1526 0.0212 13.9 5.3
JNJ18014074 0,1134 0.1103 0.1119 0.0022 2.0 -0.5
JNJ1S018338 0.1318 0.1478 0.1398 0.0113 8.1 3.5
JNJ18018351 0.2569 0.2124 0.2347 0.0315 13.4 17.1
JNJ18047991 0.2674 0.2636 0.2655 0.0027 1.0 21.6
JNJ1805572G 0.4357 0.3467 0.3912 0.0629 16.1 39.7
JNJ1B077800 0.1265 0.1588 0.1427 0.0228 16.0 3.9
JNJ18157074 0.1662 0.2521 0.2092 0.0607 29.0 13,5
JNJ18157087 0,1596 0.1566 0.1531 0.0021 1.3 6.1
JNJ18157646 0.2725 0.1636 0.2181 0.0770 35.3 14.8
JNJ18157711 1.2256 1.0636 1.1446 0.1146 10.0 148.0
JNJ18157711 0.1134 0.1070 0.1102 0.0045 4.1 -0.8
JNJ19363357 0.1469 0.1495 0.1482 0.0018 1.2 4.7
JNJ19369233 0.1169 0.1122 0.1146 0.0033 2.9 -0.1
JNJ19369248 0.1595 0.1422 0,1509 0.0122 8.1 5.1
JNJ19370026 1.0484 1.0749 1.0617 0.0187 1.8 136.1
JNJ19376240 0.3012 0.2347 0.2680 0.0470 17,5 21.9
JNJ19386042 0.1267 0.1510 0.1389 0.0172 12.4 3.4
JNJ19410833 1.1902 1.1487 ΐ,1'695 0.0293 2.5 151.6
JNJ19410859 0.6400 0.7076 0.6738 0,0478 7,1 80.3
JNJ19410872 0.1701 0.1752 0.1727 0.0036 2.1 8.2
JNJ19558929 0.3435 0.3488 0.3462 0.0037 1,1 33.2
JNJ19567314 0.4032 0.3548 0.3790 0,0342 9.0 37.9
JNJ19587327 0.1602 0.1502 0.1552 0.0071 4.6 5.7
JNJ19567340 0.1604 0.2079 0.1842 0.0336 18.2 9.9
JNJ19567405 0.1646 0.1592 0.1619 0.0038 2.4 6.7
JNJ19573541 0,1779 0.2273 0.2026 0.0349 17.2 12.5
JNJ19574867 0.1225 0.1443 0.1334 0.0154 11.6 2.6
- Ill 2017202571 19 Apr 2017
JNJ19S74BS0 0,1300 0.1291 0.1296 0.0006 0.5 2.0
JNJ20&4&73& 0.1263 0.1336 0.1300 0.0052 4.0 2.1
JNJ21192730 0.2778 0.1326 0.2052 0.1027 50.0 12.9
JNJ21194667 0.2569 0.1219 0.1894 0.0955 50.4 10.6
JNJ21196227 0.1640 0.1158 0.1399 0,0341 24.4 3.5
JNJ24843611 1.1486 0.8970 1.0228 0.1779 17.4 130.5
JNJ24B43611 0.1358 0.1201 0.1280 0.0111 8.7 1.8
JNJ24326135 0.1257 0.1257 0.1257 0.0000 0.0 1.5
JNJ24B43S72 0.4676 0.4803 0.4740 0.0090 1.9 51.6
JNJ number Raw Data Average S.O. %cv % Control
conditioned medium 0.6935 0.7803 0,7369 0.0614 8.3 104.8
no treatment 0.4735 0.6069 0.5402 0.0943 17.5 71.5
AA only + DMSO 0.1428 0.1656 0.1542 0.0161 10.5 6.3
AA + Wnt3a + DMSO 0.5702 0.8468 0.7085 0.1956 27.6 100.0
JNJ24S435B5 0.1599 0.2380 0.1990 0.0552 27.8 13.8
JNJ25753520 0,1287 0.1244 0,1266 0.0030 2.4 1.6
no cells 0.1241 0.1100 0.1171 0.0100 8.5 0.0
JNJ25753403 0.1235 0.1152 0.1194 0.0059 4.9 0.4
JNJ25757173 0.1199 0.1278 0.1239 0,0056 4.5 1.1
JNJ257S7173 0.1174 0.1162 0.1168 0.0008 0.7 -0,1
JNJ25757238 1.1100 0.9464 1.0282 0.1157 11.3 154,1
JNJ25758707 0.1247 0.1115 0.1181 0.0093 7.9 0.2
JNJ257ES785 0.2640 0.1688 0.2164 0.0673 31.1 16.8
JNJ257S8350 0.2313 0.1307 0.1810 0.0711 39.3 10.8
JNJ25758863 0.8639 0.9218 0.8929 0.0409 4.6 131.2
JNJ25873419 0.2540 0.2320 0.2430 0.0156 6.4 21.3
JNJ2S88T537 0.1809 0.3077 0.2443 0.0897 36.7 21.5
JNJ259DO641 0,1892 0.1872 0.1882 0.0014 0.8 12.0
JNJ2590O654 0.1967 0.2492 0.2230 0.0371 16.7 17.9
JNJ25900706 0.3346 0.1619 0.2483 0.1221 49.2 22.2
JNJ26047723 0.1106 0.1138 0.1122 0.0023 2.0 -0.8
JKJ26054912 0.1224 0.1445 0.1335 0,0156 11.7 2.8
JNJ26064S71 0.1312 0.1270 0.1291 0.0030 2.3 2.0
JNJ26067626 0.1653 0.2114 0.1884 0.0326 17.3 12.0
JNJ260676S2 0.1732 0.1467 0.1600 0,0187 11.7 7.2
JNJ26069901 0.1618 0.2754 02186 0.0803 36.7 17.2
JNJ26077883 1.0006 0.9631 0.9819 0.0265 2.7 146.2
JNJ26116922 0.6472 0.4319 0.5396 0.1522 28.2 71.4
JNJ26120601 0.1539 0.1469 0.1504 0.0049 3.3 5.6
JNJZ612O614 0.1127 0.1309 0.1218 0.0129 10.6 0.6
JNJ26128726 0.6887 0.5860 0.6374 0.0726 11.4 88.0
JNJ2G1304Q3 0.1141 0.1094 0.1118 0,0033 3.0 -O’;9
JWJ26134771 0.2774 0.1690 0.2232 0.0767 34.3 17.9
JNJ26150202 0.9482 1.1150 1.0316 0.1179 11.4 154.6
JN J26153647 0.7687 0.6804 0.7246 0.0624 8.6 102.7
JNJ2615B015 0.7125 0.3347 0.5236 02671 51.0 68.7
JNJ26158054 0.1446 0.1221 0.1334 0.0159 11.9 2.7
JNJ26158093 1.0968 1.3108 1.2038 0.1513 12.6 183.8
JNJ26158108 0.3167 0.3415 0.3291 0.0175 5.3 35.8
JNJ26161343 0.1261 0.1144 0.1203 0.0083 6.9 0.5
-1122017202571 19 Apr 2017
JNJ26170794 0.2223 0.2930 0.2577 0.0500 19.4 23.8
JNJ26170S20 0.1265 0.1236 0.1251 0,0021 1.6 1.3
JNJZ6170833 1.1940 0.9431 1.0686 0.1774 16.6 160.9
JNJZ61770B6 1.0689 0.6879 0.8784 0.2694 30.7 128.7
JNJ26177762 1.0444 0.7603 0.9024 0.2009 22.3 132.8
JNJ261B4457 0.1443 0.1209 0.1326 0.0165 12.5 2.6
JNJZ6219050 0.1152 0.1309 0.1231 0.0111 9.0 1.0
JNJ number Raw Data Average S.D. %CV % Control
conditioned medium 0.7590 0.7451 0.7521 0.0098 1.3 98.0
no treatment 0.5687 0.4490 0.5089 0.0846 16.6 60.4
AA only + DMSO 0.1988 0.1522 0.1755 0,0330 18.8 8.9
AA + Wnt3a + DMSO 0.6837 0.8460 0,7649 0.1148 15.0 100.0
JNJZ6219063 0.1911 0.1101 0.1506 0.0573 38.0 5.0
JNJ26220454 0.2772 0.1151 0.1962 0.1146 58.4 12.1
no celts 0.1278 0.1084 0.1181 0.0137 11.6 0.0
JNJ26241774 0.1443 0.2120 0.1782 0.0479 26.9 9.3
JNJ26241917 0.4413 0.2238 0.3326 0.1538 46.2 33.2
JNJ26243204 0.1098 0.1085 0.1092 0.0009 0.8 -1.4
JNJ26247143 0.1389 0.2147 0.1768 0.0536 30.3 9.1
JNJ2624S729 0.1852 0.1342 0.1597 0.0361 22.6 6.4
JNJ26261105 0,1114 0.1295 0.1205 0.0128 10.6 0.4
JNJ26361712 0.5375 0.6158 0.5767 0.0554 9.6 70.9
JNJ26361725 0.1259 0.1441 0.1350 0.0129 9.5 2.6
JNJ263E6730 0.1206 0.1312 0,1259 0.0075 6.0 1,2
JNJ26367991 0.2269 0.2857 0.2563 0.0416 16.2 21.4
JNJ2E3C7931 0.1140 0.1079 0.1110 0.0043 3,9 -1.1
JNJ26399906 0.9589 0.8868 0.9229 0.0510 5.5 124.4
JNJ2G399906 1.0442 0.9622 1.0032 0.0580 5.8 136.8
JNJ26339945 0.1961 0.1735 0.1848 0.0160 8.6 10.3
JNJ26399971 0.5732 0.5216 0.5474 0.0365 6.7 66.4
JNJ2E399984 0.1273 0.1217 0.1245 0.0040 3.2 1.0
JKJ26399997 0.5932 0.6671 0.6302 0.0523 8.3 79.2
JNJ26400049 0.1444 0.1368 0.1406 0.0054 3.8 3.5
JNJ264E3197 1.0786 1.0891 1.0839 0.0074 0.7 149.3
JNJ264B3310 0.5418 0.2338 0.3878 0.2178 56.2 41.7
JNJ26483223 0.1268 0.2052 0,1660 0.0554 33.4 7.4
JNJ264S3236 0.1169 0.1184 0.1177 0.0011 0.9 -0.1
JNJ26483249 0.8618 1.0400 0.9509 0.1260 13.3 128.8
JNJ26483249 0.8430 1.0187 0.9309 0.1242 13.3 125.7
JNJ264S3262 0.3659 0.3168 0.3414 0.0347 10.2 34.5
JNJ26511901 0.9184 0.8116 0.8650 0.0755 8.7 115.5
JNJ26511927 0.2384 0.3156 0.2770 0,0546 19.7 24.6
JNJ26511953 0.2297 0.1469 0.1883 0.0585 31.1 10.9
RWJB7694 0.1955 0.1256 0.1606 0.0494 30.8 6.6
RWJ676940 0.1658 0.1704 0.1681 0.0033 1.9 7.7
RWJ677545 0.1399 0.1303 0.1351 0.0068 5.0 2.6
RWJ678936 0.1234 0.1236 0.1235 0.0001 0.1 0.8
RWJ680665 0.1397 0.2147 0.1772 0.0530 29.9 9,1
RWJ6B0667 0.1218 0.1310 0,1264 0.0065 5.1 1.3
RWJ6fiOG68 0.1456 0.1981 0.1719 0.0371 21.6 8.3
- 113 2017202571 19 Apr 2017
RWJ6B06G9 0.5412 0.1898 0.3655 0.2485 68.0 38.2
RWJ68085B 0.1996 0.1245 0.1621 0,0531 32.8 6.8
RWJeaoBso 0.1418 0.2014 0.1716 0.0421 24.6 8.3
RWJ6B0S79 0,1106 0.1197 0.1152 0.0064 5.6 -0,5
RWJ680885 0.1159 0.1272 0.1216 0.0080 6.6 0.5
JNJ number Raw Data Average S.D. %cv % Control
conditioned medium 0.8077 0.7210 0.7644 0.0613 8.0 74.7
no treatment + DMSO 0.4638 0,4073 0,4356 0,0400 9,2 36.7
AA/Wnt3a 0.8466 0.9935 0.9830 0.2592 26.4 100.0
JNJ10222784 0.8095 0.9055 0.8575 0.0679 7.9 85.5
JNJ10222927 0.3519 0.4708 0.4114 0,0841 20.4 33.9
JNJ1 0231273 0.1609 0.1275 0.1442 0.0236 16.4 3.1
JNJ10259847 0.5020 0.2733 0.3877 0.1617 41.7 31.2
JNJ10259847 0.3413 0.4146 0.3780 0.0518 13.7 30.1
JNJ17154215 0.1176 0.1174 0.1175 0.0001 0.1 0.0
JNJ17154215 0.1148 0.1410 0.1279 0,0185 14.5 1,2
JNJ17157659 0.2394 0.2450 0.2422 0,0040 1.6 14.4
JNJ17163042 0.3672 0.3098 0.3385 0.0406 12.0 25.5
JNJ10166565 0.2722 0.1593 0.2158 0.0798 37Ό 11.3
JNJ17174664 0.5079 0,4349 0.4714 0.0516 11.0 40.9
JNJ17187027 0,1076 0.1168 0.1122 0.0065 5.8 -0.6
JNJ17187053 0.2569 0.2151 0.2360 0.0296 12.5 13.7
JNJ17193774 0.2846 0.4376 0.3611 0.1082 30.0 28,1
JNJ17200976 0.1168 Q.1136 0.1152 0.0023 2.0 -0.3
JNJ17205955 0.1168 0.1152 0.1160 0.0011 1.0 -0.2
JNJ17205955 0.1137 0.1195 0.1166 0.0041 3.5 -0.1
JNJ17205994 0.1154 0.1152 0.1153 0.0001 0.1 -0.3
JNJ17226703 0.2188 0.2353 0.2271 0.0117 5.1 12.6
JNJ17982133 0,4588 0.2521 0,3555 0.1462 41.1 27.5
JNJ17989049 0.3081 0.1961 0.2521 0.0792 31.4 15.5
JNJ number Raw Data Average S.D. %cv % Control
conditioned medium 0.7914 1.1189 0.9552 0,2316 24.2 93.3
no treatment 0.4215 0.5259 0.4737 0.0738 15.6 39.8
no cells 0.1152 0.1160 0.1156 0.0006 0.5 0.0
AA/Wnt3a 0.7168 0.8836 1.0151 0.2016 19.9 100Ό
RWJ680991 0.2882 0.2308 0.2844 0,0499 17.6 18.8
RWJ680992 0.3049 0.2845 0.3127 0.0282 9.0 21.9
RWJ6B0993 0.5403 0.2570 0.3855 0.1332 34.6 30.0
RWJ681140 0.7323 0.3034 0.4388 0,2041 46.5 35,9
RWJ681142 0.1185 0.1216 0.1199 0.0018 1,5 0.5
RWJ681146 0.2496 0.2683 0,2302 0.0376 16.3 12.7
RWJ631945 0.1548 0.1356 0,1513 0.0134 8.8 4.0
RWJ6819A 0.1555 0.1450 0.1581 0.0161 10.2 4.7
RWJ682205 0.2347 0.1920 0.3785 0.2589 68.4 29.2
RWJ447228 0.1842 0.2093 0.3793 0.2585 68.2 29.3
RWJ675430 0.7223 0.8707 0.4291 0.2452 57.2 34.8
RWJ355923 0.6268 0.3192 0.3354 0.1667 49.7 24.4
- 1142017202571 19 Apr 2017
Table VII: Effects of Inhibitors of GSK-3B Enzyme Activity on the proliferation of human embryonic stem cells,
List Strong Hits >=120% control
JNJ Number % Control Value
RWJ352628 195.3
JNJ26158093 183.8
RWJ35325B 180.4
JNJ26170833 160.9
JNJ2G150202 154.6
JNJ257S7238 154.1
JNJ19410833 151.6
JNJ264S3197 149.3
JNJ18157711 148.0
RWJ676139 147.3
JNJ26077883 146.2
RWJ352190 142.3
JNJ2639990G 136.8
JNJ19370026 136.1
JNJ26177762 132.8
RWJG7643Z 131.6
JNJ257588&3 131.2
RWJ67543Q 130.9
JNJ24843G11 130.5
RWJ675605 129.0
JNJ264S3249 128.8
JNJ26177086 128.7
JNJ2G483249 125.7
JNJ2639990G 124.4
RWJ675948 120,0
List Moderate Hits
60-120% control
JNJ Number % Control Value
JNJ26511901 115.5
RWJG76431 113,8
RWJB73515 108.3
JNJ26533156 105.5
JNJ26153647 102.7
RWJ676639 93.0
JNJ26128726 88Ό
JNJ10222784 85.5
RWJ67657 84.7
JNJ26512005 84Ό
JNJ19410859 80.3
JNJ26399997 79.2
RWJ676137 77.5
RWJG752G0 76.9
RWJ355923 76.7
RWJ675266 75.2
JNJ26116922 71.4
JNJ2G3G1712 70.9
RWJG70804 70.7
RWJ675B81 69.9
JNJ26153015 68.7
RWJ352244 68.2
RWJS74239 67.4
JNJ2G399971 66.4
JNJ2B714134 63.3
JNJ26533065 61.1
- 115 Table VIII: Dose-DEPENDANT Effects of Inhibitors of GSK-3B Enzyme
Activity on the proliferation of CELLS OF THE human embryonic stem cell
LINE Hl.
JNJ 18157638
2017202571 19 Apr 2017
CencelitlatipU
JNJ17189731
JNJ1722»Z5
10'
......’sr
Ϊ.25
0.625
0313
0.156 ; Concentration luKII
'.s'
2.5 .
0.625
0.313
0.166
I Cents ill ratio ii l»M|
1 25
0.625 0.313 .11‘6 i Concentration feBL
.....'S’.....
2.6 .1.35
0625 ¢313
B..-15B
Cell numbs) SP ore C.CS1
W
W
SOT ' 042 law :0.047
o.'rei
CC40 twigs ficiti
0¾¾ 0.074
JNJ?C156t)15
Cell number SD
0.001'
OQ34‘ 'IW ®97
0.921
1.028
1.027 .0,001
0.035
461 ' o,'ira 0.122 0.0B9 0.067
JNJ193?(M26
Cell number ! SD
0.000 0.024 1.097 1 446 1.296 1.034
0.600
0,034
0.294
0.076
D.1B3
0.197
0-826 0.,030
JNJffiSWOS
Cell numbei I SD
0.000 □.□OQ
i. ... 1. i I □'
......
ΜϊΜ
OMD ¢458
0054
O.LL
¢.078
D.DB ''W ' Loss' 'T®'
Ϊ ,i$2 0 041
W.....
nsm ociciz
1013
JNJ264H3157
Cell numberl SD
0,096 0103
0/2K U2E3
1159?..... D O 19
Li24.......d.'ioi
1.106 0.056
0.BS9 0,213
0.6S0 0.079
JN12&150702
Cell number I SD
0.436 0.690
0.7ΕΘ 0.490
1001 0129
1.150 0.043
0639 0 240
0617 ..D232 iio·? ήί.'ϊχί
JNJ2t533065
Cell nunilrerl SD
U.UJ1 ,0,027 ......fiiO'......‘;CL354.
tt.*1 ’“I r·'' “•f-l·
16S3 :0.170
.....‘ΐ.|$.......0.101
BBSS '' 'Tp 207 MBBI 0 463
Cell number! so ttttg;' '0.147 'ίί$&’''''’ΪΪΒ39 0',W......0.035
.......'Ϊ07........trip?
.......
LosfirijLi'i
Call number | SO
t.300 <346 We f.15S IWS i.ote 0,776
OCTI 0007 0.020 '0041 0 018 oOS ¢054
Cell ntmihei | SD
1.049 .0.063
ΤΪ04......Jo.'tiii
0932......70-067 ί'.οοε.......:'αϊκ3
O'.'asa.......jofae
0.742
0.7Ϊ2
10.127
20.020
JNJ26433219
JNJ17225e?1
JNJI7229453
Cell nmiihor SD
06B 0.074 ¢173.......0.207 ' ίί420......o.32E ¢850........0 736
0.910 D.0S1
0,860 0,131
0.742 0.051
JNJ26170B33
Cell number SD
0.129 0.170
D.530 0.030
1174 GDIS
113 0.057
IBS 0 041
1,-153 0.102
9M 'doss
JHJ28533156
Cell liiinibei j SD
D.QOg dri© izzCWjije 1,652·.· 0 03?
3S7 Π 0?3 1213 __ 0177 1,.706 0.142
Cell number | SO
Cell number | SD
0.290 0.307 /0,458 /',U3^3' □ 000 oosg □ CEO □.067
0002 ' Uli
0640
0,739
0605
0,705
0.774
0.104 aim
0.036
0,034
0.027
438
0636
0.736
0.731
0.932
□.□SO
Ο,ΟΪΕ
0.D25
0,038
0.005
JNJ261770BS
JHJZ6177762
Cell number SD
0,412 0.0Θ1
1.128 0,026
1.031 0.217
0.914 0 100
0601 0.136
0.785 0.121
0559 0 060
JNJ2C714194
Cell number SD ,,,0.052.......U.OcZ
Ϊ'.ΪΒΙ “J,B.J34 T ?53 ' Otcti Liia'.......n.W
1741 0.031
1.041 0 007
Cell number [ Sil
996 '0.908 1 005 1.200 1 111 0.859 '0612 :0.246 :0.179
6.066 :0.085 =0.300 iO.DS4 io.059
JNJ3026562
Cell immbei | SD
053 □ 024 .0.905. ,0.036
Tiff
Liei'. ';'O062 ί?3Ϊ'-'Ϋθΐ52
1.216 0.007
IOi ,0065
- 116Activity on the DIFFERENTIATION of CELLS OF THE human embryonic stem cell LINE Hl.
jHjiaisreaa
2017202571 19 Apr 2017
Table IX: Dose-DEPENDANT Effects of Inhibitors of GSK.-3B Enzyme
CancMttfiifltUt
ID
........|.......
11313
0.156 got! centratfon
JSSL
ID
S'' 2.5 ' '
25
0,625
0313
0456 ;Con ccfltrallQf I
J«WL s
2.S „1.25 ' 0+25
0.313
9:17 : Concent ration
IhMI
A-„. 2S·1.05 θ'&5 0.313 0.156
Sax47 itliteWiSO
O.6S9 ,.004'
0.144 acii
1.023 0C£2
354.........'ai'go '07*93........'ifisS
O.B03 onia
0.341 0.105
JHJ2S15TO15
Snx17 intensity | SD
0200 0.732 0324 0+3) bis
0+01 + C20 0157 0.065 6.113 □42Z 'ΟΌ+Γ
S4«i7'lh»^SrSD oooor 0.010
0+35 0.049
1336 aisg
.......Ϊ2'-·ϊ3.........0.030
0.997
731 o+a
JHJ2S512O05
0CS5 0.172
0Γ27
Snx17 Intensity SO
0+0Q
DOOQ
0270'
0+70
0970*
0.742
0.533
0.000
0.000
0382
6.434
0.021
0.043
0.643
SoitiT lritjanfeHB l' SO aos itust .......Tig% <$£@6 '’'W'.......® mjaassiar “Qffii
0.W
0.497 ' 0.993 1 061 0.937
863
Mrtnasffl
Soit171nt6n«1te[~SB
Figure AU2017202571B2_D0049
w
1.0EB
CO43 'aion am?· '0,015
Saxff InfeieBy I SO
C0E4 0.063
Sajtff JnmgHvI SBlies w
Lttj.......:ο:ΰιΰ’
ϊ.-ite 'o,D3i i ii»' +.006
0.031 '+033 0.043 :0 0=6
0,739 +,074
JHJ17725871
Scx17 Imfcrtajty | SP
SanK HKaTeajij SB +W
TffiS......Ϊ0.002
'.38 - <063 /+071 [ o ni
..0.167
70.032
0.767
0.692 +651
JHJ177a45g
0.076 0 14.4 0.065 0 136
062
JHJ2615O2A2
Sax17 iMtfeasity | SO
0.491
0.150
0,800
0310
0+67
0.516 a/ta [□.681 +224 :+,201„,gM, .pi® ’tSW
SoirtT intauHte so
„.....mjlJM
14+15 '+,174
+.233
1055
0.569
0.655
0.451
046 0,124 0 118 0.443 +jwi ^169:
1.?¥3' 3 282 :+8^: ''+062 trass' +.176
O.E%B ; 0.015
0.267 :0230
Snx17 InlgnUty | SO
S^inriftiid^rSP
028.1 :0350:
0.46.0 +.183
1.019' 2.132
0960.'......++06 i'.'oso'
SSsF^i+Sb:
-100255331¾
Spxt7lnteii8lty I SD .0+02.^., +H}1 ' .........0<ϊ i:azs· 0.078 i .172 0.01 =
1.107 016$
1.060 0.125
0.402 '+005
586
0,786
0,700
O.TBZ :0229 + 041 + 185 +,051 +,132 '0 061
JNJ2&177OOT
SnifIT Interwjtyl SD '0 059· 0 036 + ‘31 jS® _ άζ» ιά« +W j&lis
.......+¾.......W
.....0.000.. 0-001
o.g ' O+ffl”
587 0.655 0.753 n’mc
W2617776?
0.035
0.034
0.023 : 0.001 '0+98 6.043
0.330
0,916 vast +3iS
S714194 §2ϊί g’-ipBiwiafa j W
Sitx17 Intensity I SD
0.701
Τ’!
o ?2a ...... 1.+59
+.136 i.Sfis' ......iasa
0.307 0.146 0 + 19 +.003
70186 + +Γ
......nits»......'..SOT'250· O'77 rise.........“lafifif
1ΛΪ2
SUXHT lHtetliity j 50
0,313
1.140
0.998 +'oce +036 + 006
- n+fiL TwiT *20 i.tzi 1.241 1.23, 1.034 , :0+46 +0,070 [0038 ..0.010-7 To+ai
0014
+.008
- 117Activity on the proliferation of CELLS OF THE human embryonic stem cell
LINE H9.
JNJ1S15769S
2017202571 19 Apr 2017
Table X: Dosc-DEPENDANT Effects of Inhibitors of GSK-3B Enzyme i Ctneenftatlbn
JHJ17153796.
JhSL
ί.........f.....
........3^'
1.25 /'''0.636' 0 313 0.156
Cuncentraflon
IiiMI s'
25
0.625
0313
Soil cflntraBbrT
JH*L
£.
3i
LSS
......’WT ~
.......BW'
ICencerTtrirtlon
B>2L tfl.
:.......
p.3',3 ΐ 0.156
CeUtlurnlier I 5D
0,131 0.209 aur.......b.141 /0.140 0 112
0.307' '' o.isa' π Via
o.os3 acts
0.3® 0.B01
JHJ2S1W15
Cell number SD
0:001
0023 ' o eai toil oi®y D-W.
0.000 bi;?4i
0.223
0.4B1
o.ioa
0.L33
JHJ13OTI076
Cellntnnbcr .| SD
0.033 O,£OO
0.032 OCH lissa.........OJ '
.................0032
Sir
0.330 ,,,,,,,,¾¾..
jifcaesiaiiB
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' nS? inn ,0:0)1 fegsi
0.090. ''ftW
8.8»”' ®
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O.T® 0009
Figure AU2017202571B2_D0050
Cell number SD
JHJ17189731 Cell number | 5ΪΓ ___-ttIL,
Έΐ®;......
USS. :iW7
3.86-7 0.070 ole® 0.109
JNJ17223375
number I SD Cell number I SD
0.123 e loe 0.770 0.077
0,954 :0 146 0.456 o.on
0.796 0 101 0 384 0 247
0 54) ;0.Q51 0,325 ;O.oq:
0332 ‘0/049 0.009
0.206 10,005 0 172 0.071
0.142 10,039 0.138 0,048
J HJ 76483197
Call number | SD
0.785 10.192
1.067 ' ϊ .369
1.477
0.099
0.540
0.206
JHJ2615O2D2
Cell bum her
JHJ2S483249
Cell number
SD :0336 :6:025 io 1.47 Ϊ0 108 :0094 :0069 ,0.134 0 087
SO
0462 .:0.094
0.433 .0050 £21 :0.229
O&3........00.030
JK& /Q,tg2 S,t§2 0 025 +03057.......j0M
JHJ26573065
Sell number ttOqtp .......af
Figure AU2017202571B2_D0051
0.2CB' +01320
0388-..........0'.0t9
0.304 :0.113
12E7 ills
□.ί® 'aose
0X47 0.067
J »426170833
Cell numhei~Γ$5~
0CC2 :0.001,
1.325 0015
i.a&
.kWi ______
3®, Jy2
.................ii
JHJ26S33156
Cell number
JHJ17275B71
Cell Biimher | S0~
JNJ172J445B
Cell number
SD
377 0,336+ οϊέκ 0.222 0.2® 0,200 0 174 _:D 040 |'.1081 iooie 0035 :0,096 IDS®,
.....icosT
0.000 0 052 ' 0003 ' 0.1DS 0 169 0.119 0.067
0.000
O.OlB 0303 0.003
0.041 :0,02b ' 0-110
JHjg81T7O»___
Cell ΰϊιι~Μΐ>βϊ~ Τ$ΪΓ
JNJ26177762
Cell number SD
1Λ17
D.733 t&c
Figure AU2017202571B2_D0052
JNJ26711194
10,043 1.022 0.422
:0 030 1.201 0 1Π9
:□ .122 ,.197 0.D6B
.ί.ρ.θ’β 1039 0,213
:0,072 0,086 n mi
'0,000 0.437 LkUbb
•0 015 0.276 0 043
Figure AU2017202571B2_D0053
0.042
0.862
0.098
0.012
Cell number I SP
JNJ3026S82
Cell number I SO
W IqM O&5
0.2&f io.® 0.914-
0 086 :0033 0.267
□.063 : 0.004 0.210-
4G,EW4, t ..j®®® «Ma ..J.ER· 0 0,7 :0.001 J“‘i0.TO
0 033 :0.037
cSsK ifl.OTG 0044 :0.028
W*S#T 4&,0ffi1 0.100 :0.033
03i7 ta 0.057 0-032
0,132 '0,014 0 070 0.043
- 118Activity oil the DIFFERENTIATION of CELLS OF THE human embryonic stem cell LINE H9.
JH.H8157698
2017202571 19 Apr 2017
Table XI: Dose-DEPENDANT Effects of Inhibitors of GSK-3B Enzyme
Conceftitation atUiijante?
awayttam
JNJi72233?5
IgM] SowtT IhtetBriW | 5D 3t»17 Intensity [ SB
o.isz
:........0213.....
:......ΉΜ.....
' 1 <5,.....
75·
S : Con ceiiitrirthHi a 157 ; orb : ' 0 625......
25 : 2.5
i.........A...............
: ID ' ' |g»l
Figure AU2017202571B2_D0054
0:315 0355 u tai 0,105 0.121
JHJ26158015
o.oeg
0.141 o 153
0.311 0453 ' 1.012 OJ9B6 ' 0.430 0.002
W8 *t(.0C5
0.076'
DW
0423
0.HS
JKJ2HE31S7 :5^17 Intensity f SD SoxlZ Intensity] 50
0:354 0.044
5-1 01.:62
0.505.......jr.2
D.943 0.419
0.659 0.23B
0.019 0C19 ttiioi acai
JHJ1B37M26
Sw17 lctetW~r^P
SoxIT IHffeiwIly | SD~ Sexi? Intinirily I SD~ ; 0,093 εοοϊσ' Τι® ftLtiia
1017,
0:158 :3.432 0.111'
3,022 0,005
001254*3249
0.149 0399 0.673 1 110 0.857 0,134 ''□129
J141211150202
0.063 bibs o'.IS?
01W2
0.012
0.0b?
0.037
SaxlZ Intensity SO
..0116
0.459 “otSt Ti 14 0.140 :0,047 .cozi w
TIDES .10079 ;ooee :0,110
JHJ17225B71
4ox11 Intensity I so Sum? IntsTijfty | SD i}.135 3 0511 ' ':Ef:O :0.01S
'.O2; 2 0.134
Εζ.2Ε2 :0.,03
0,209 00«
0.,£4 :,023
JHJ261703»
Sax171ntawt}tvl SO
Snx17 Intensity | SD
096 0.025
........b.'nb......:'o,'b3b
l.'jy&t :0.013 '02MT.....:0J»2
0297' Π 235
353 0.030
0694 0.123
JHJ1722445B
132 0146 Γ 196 0129 0177 0174 0200
DOES
0,0(6
0084'
0.029
0,030
0070
0022
Sexi/ Intensity [ SO
0.039 0 070 0137' 0.075 0 053 0,038 boob
0.D10 :0.027 :0.049 0.017 :0.005 ;ο,οΰι a'.roo
JNJ26T77O8S SohT?1 «itsre^ty l SO* _ - ....
~SnxT7~l'niansitvlSD*
Figure AU2017202571B2_D0055
0:001
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0.202
D.2S9
0.300.
O.DCD inee io,tob 'flW |Β®
Π234 10,076
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p.ppl abba up® aza1 □.'crzS' ' b.izS 0087 □.000
0.002
0.019
0-®5
0.000:
11759 :0.051
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b.o'73......:o.oes ' 0.053 ...... 0.775 ' 0.2 VJ :0.001 ! 0.003
- 119- 120 -

Claims (23)

  1. CLAIMS:
    1. A method for differentiating pluripotent stem cells into definitive endoderm cells comprising treating the pluripotent stem cells with medium supplemented with a compound of formula (III)
    2017202571 20 Apr 2017 wherein the compound is selected from the group consisting of:
    a. 6-[[2-[[4-(2,4-dichlorophenyl)-5-(4-methyl-1H-imidazol-2-yl)-2pyrimidinyl]amino]ethyl]amino]-3-pyridinecarbonitrile;
    b. 3-[1-(3-hydroxy-3-methyl-butyl)-1H-indazol-3-yl]-4-(1-pyridin-3-yl-1H-indol-3-yl)-pyrrole2,5-dione;
    c. 3-[1-[3-[(2-hydroxyethyl)methylamino]propyl]-1H-indazol-3-yl]-4-[1-(3-pyridinyl)-1 H-indol3-yl]-1 H-pyrrole-2,5-dione;
    d. 14-ethyl-6,7,9,10,13,14,15,16-octahydro-12H,23H-5,26:17,22dimethenodibenzo[k,q]pyrrolo[3,4-n][1,4,7,10,19]dioxatriazacycloheneicosine-23,25(24H)dione;
    e. 14-(2-thienylmethyl)-6,7,9,10,13,14,15,16-octahydro-12H,23H-5,26:17,22di(metheno)dibenzo[k,q]pyrrolo[3,4-n][1,4,7,10,19]dioxatriazacyclohenicosine-23,25(24H)dione; and
    f. 14-(1-naphthylmethyl)-6,7,9,10,13,14,15,16-octahydro-12H,23H-5,26:17,22di(metheno)dibenzo[k,q]pyrrolo[3,4-n][1,4,7,10,19]dioxatriazacyclohenicosine-23,25(24H)dione.
  2. 2. The method of claim 1, wherein the method further comprises culturing pluripotent stem cells prior to treating the cells with the compound of formula (III).
  3. 3. The method of claim 1 or claim 2, wherein the pluripotent stem cells are treated with the compound of formula (III) for 12 to 48 hours.
  4. 4. The method of claim 1 or claim 2, wherein the pluripotent stem cells are treated with the compound of formula (III) for 1 to 72 hours.
    - 121 2017202571 20 Apr 2017
  5. 5. The method of any one of claims 1 to 4, wherein the compound of formula (III) is used at a concentration of 100 nM to 100 μΜ.
  6. 6. The method of any one of claims 1 to 4, wherein the compound of formula (III) is used at a concentration of 1 μΜ to 10 pM.
  7. 7. The method of any one of claims 1 to 6, wherein the pluripotent stem cells are human stem cells.
  8. 8. The method of claim 7, wherein the human stem cells are human embryonic stem cells.
  9. 9. The method of any one of claims 1 to 8, wherein the compound of formula (III) is 6-((2[[4-(2,4-dichlorophenyl)-5-(4-methyl-1 H-imidazol-2-yl)-2-pyrimidinyl]amino]ethyl]amino]-3pyridine-carbonitrile.
  10. 10. The method of any one of claims 1 to 8, wherein the compound of formula (III) is 3-(1-(3[(2-hydroxyethyl)methylamino]propyl]-1 H-indazol-3-yl]-4-[1 -(3-py rid i ny I)-1 H-i n dol-3-y I]-1 hlpyrrole^,5-dione.
  11. 11. The method of any one of claims 1 to 8, wherein the compound of formula (III) is 3-(1-(3hydroxy-3-methyl-butyl)-1 H-indazol-3-yl]-4-(1 -pyridin-3-yl-1 H-indol-3-yl)-pyrrole-2,5-dione.
  12. 12. The method of any one of claims 1 to 8, wherein the compound of formula (III) is 14ethyl-6,7,9,10,13,14,15,16-octahydro-12H,23H-5,26:17,22-dimethenodibenzo[k,q]pyrrolo[3,4n][1,4,7,10,19]dioxatriazacycloheneicosine-23,25(24H)-dione.
  13. 13. The method of any one of claims 1 to 8, wherein the compound of formula (III) is 14-(2thienylmethyl)-6,7,9,10,13,14,15,16-octahydro-12H,23H-5,26:17,22di(metheno)dibenzo[k,q]pyrrolo[3,4-n][1,4,7,10,19]dioxatriazacyclohenicosine-23,25(24H)dione.
  14. 14. The method of any one of claims 1 to 8, wherein the compound of formula (III) is 14-(1naphthylmethyl)-6,7,9,10,13,14,15,16-octahydro-12H,23H-5,26:17,22di(metheno)dibenzo[k,q]pyrrolo[3,4-n][1,4,7,10,19]dioxatriazacyclohenicosine-23,25(24H)dione.
    - 122 2017202571 20 Apr 2017
  15. 15. The method of any one of claims 1 to 14, wherein the medium is further supplemented with activin A.
  16. 16. The method of claim 15, wherein the medium is supplemented with 1 pg/ml to about 100pg/ml of activin A.
  17. 17. The method of claim 15, wherein the medium is further supplemented with serum.
  18. 18. The method of claim 17, wherein the medium is supplemented with 2% to 5% of serum.
  19. 19. The method of any one of claims 1 to 8, wherein the compound of formula (III) is an inhibitor of glycogen synthase kinase 3β enzyme activity.
  20. 20. A method of differentiating pluripotent stem cells into pancreatic endoderm or pancreatic endocrine comprising differentiating pluripotent stem cells into definitive endoderm cells using the method of any one of claims 1 to 19 and differentiating the definitive endoderm cells into pancreatic endoderm or pancreatic endocrine cells.
  21. 21. The method of claim 20, wherein the method comprises differentiating pluripotent stem cells into pancreatic endocrine and wherein the method further comprises differentiating pancreatic endoderm cells into pancreatic endocrine cells.
  22. 22. Definitive endoderm cells when produced by the method of any one of claims 1 to 19.
  23. 23. Pancreatic endoderm or pancreatic endocrine when produced by the method of claim 20 or claim 21.
    1/20
    2017202571 19 Apr 2017
    Figure IA
    1.5 φ > o 1.0
    S 'T u £ ti in c 2 o o . . φ α o 0,0 O'
    Cell number min iu.
    0.157 0.313 0.625 1.25 2.5 5 10
    Concentration of JNJ17189731 [μΜ]
    Figure IB
    Sox17 Expression ms * « c <2 8 o
    Ο Q. 0 £
    1.5
    1.0
    0.5
    0.0 nnim di
    0.157 0.313 0.625 1.25 2.5 5 10
    Concentration of JNJ17189731 [μΜ]
    2/20
    2017202571 19 Apr 2017
    Figure 2A
    Cell number
    Φ > 2 ·- Γ « £ 0 o φ α o φ
    >
    (0
    J
    0.157 0.313 0.625 1.25 2.5 5 10
    Concentration of JNJ17163796 [μΜ]
    Figure 2B *w £ o Φ Q. X.
    Φ > 2
    Sox11 Expression .11.
    ί
    0.157 0.313 0.625 1.25 2.5 5 10
    Concentration of JNJ17163796 [μΜ]
    3/20
    2017202571 19 Apr 2017
    Figure 3A
    Cell number ^21.0 ο α o 0.0
    QC
    Figure 3B
    0.157 0.313 0.625 1.25 2.5 5
    Concentration of JNJ17223375 [μΜ]
    Sox17 Expression >£$ 10
    2*0 0.5 ο α o
    0.0
    γΕί E-ι ri E-i - r, r ι 1 1 _
    0.157 0.313 0.625 1.25 2.5 5 10
    Concentration of JNJ17223375 [μΜ]
    4/20
    Figure 4A
    Cell number
    2017202571 19 Apr 2017 * ·-1.5
    1-0 * « c 0.5
    - 0 0 nn
    Φ 0. 0 U.U £
    it ~L PI
    0.157 0.313 0.625 1.25 2.5 5
    Concentration of JNJ18157698 [μΜ]
    Figure 4B
    Φ >
    m * = ί 0 o ®Q,0 £
    1.5
    1.0
    0.5
    0.0
    Sox17 Expression
    5 Η ή γΞπ ι_
    0.157 0.313 0.625 1.25 2.5
    Concentration of JNJ18157698 [μΜ]
    5/20
    2017202571 19 Apr 2017
    Figure 5A
    Figure 5B
    Sox17 Expression o
    * u Φ > p
    2 5 £
    12 ο o o a υ £
    1.5
    1.0
    0.5
    0.0
    14 a i j
    0.157 0.313 0.625 1.25 2.5
    Concentration of JNJ26158015 [μΜ]
    6/20
    2017202571 19 Apr 2017
    Figure 6A
    Cell number
    5».
    > .t £
    Hi po
    2.0
    1.5
    1.0
    0.5
    0.0 fb fl 1 r!J J
    0.157 0.313 0.625 1.25 2.5 5 10
    Concentration of JNJ26483197 [μΜ]
    Figure 6B * Φ = >2 ra £ +> w E o o 0 ΐαϋ X
    Sox'! 7 Expression
    1.5 -, 1.0 0.5- 0.0 fk- 1 □lj 1
    0.157 0.313 0.625 1.25 2.5 5 10
    Concentration of JNJ26483197 [μΜ]
    7/20
    2017202571 19 Apr 2017
    Figure 7 A
    Cell number s„_1·5 > 5 S1'° • o o0.5
    Φ Q. 0 * 0.0 l El LA ί·
    0.157 0.313 0,625 1.25 2.5 5
    Concentration of JNJ26483249 [μΜ]
    Figure 7B
    Sox17 Expression ** fl) _ Φ > 0 >5$ * tt C 12 ο o Φ Q, o Οΐ
    1.5 1.0 0.5 0.0 rn *
    I 1¾ A
    I I
    0.157 0.313 0.625 1.25 2.5 5
    Concentration of JNJ26483249 [μΜ]
    8/20
    2017202571 19 Apr 2017
    Figure 8A
    S.J·5 >S^°
    5 ο O0.5 Φ Q. 0
    1C 0.0
    Cell number
    0.157 0.313 0.625 1.25 2,5 5
    Concentration of JNJ 10220067 [μΜ]
    Figure 8B
    Sox17 Expression o
    * ¢Φ > 0 t « c
    JS ο o
    0 QO
    1.5
    1.0
    0,5
    0,0
    -E- r? I* -Ϊ- ή L Π
    0.157 0.313 0.625 1.25 2,5 5 10
    Concentration of JNJ10220067 [μΜ]
    9/20
    2017202571 19 Apr 2017
    Figure 9
    CXCR4 Expression
    10/20
    2017202571 19 Apr 2017
    Figure 10-A
    CXCR4 mRNA level
    11/20
    2017202571 19 Apr 2017
    Figure 10-B
    12/20
    2017202571 19 Apr 2017
    Figure 10-C
    Soxi 1 mRNA level
    5μΜ
    13/20
    2017202571 19 Apr 2017
    Figure 11-A
    Oonlroi
    ΙμΜ' 3μΜ ΙμΜ 3μΜ ΙμΜ 3μΜ ΙμΜ 3μΜ 1μΜ 3μΜ ΙμΜ' ϊμΜ ΙμΜ
    JNJ1W5 1 0
    1D2OT JI
    14/20
    2017202571 19 Apr 2017
    Figure 11-B
    Pdx1 expression
    15/20
    Ο (Μ
    Lh
    Ph
    Ο
    Figure 12
    IT) (Μ
    Ο (Μ
    Ο (Μ
    -2.5
    S2.0 »15 « ΙΛ “05 ο
    OmiLMhJ
    NegaSve tefte 3μΜ ΙμΜ 3μΜ ΙμΜ 3μΜ ί ΙμΜ 3μΜ' ΙμΜ 3μΜ 1μΜ 3μΜ ΙμΜ 3μΜ 1μΜ ra <υ
    LT
    Cffliifol
    058015 «3137 «2Μ
    3μΜ >163756
    16/20
    2017202571 19 Apr 2017
    Figure 13-A
    Cell number
    17/20
    2017202571 19 Apr 2017
    Figure 13-B
    Insulin expression
    2 2.5 j 2.0 £ 1.5 S 1,0 oQ.5 ζο.ο >
    +- ω
    cc a
    >
    ra co
    a)
    Li I.____Ll .1 ii
    Φ >
    <0
    O
    CL
    3.
    1 I i ϊ co τ co -3.
    1 μΜ
    Control JNJ17189731
    JNJ18i57698! ' JNJ17223375 «19? JNJW?
    JNJ17163796
    MM
    18/20
    JW17163796 «53249
    19/20
    20/20
    2017202571 19 Apr 2017
    Figure 15-B
    Insulin expression
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* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
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