[go: up one dir, main page]

AU2001287010A1 - Statistical modeling to analyze large data arrays - Google Patents

Statistical modeling to analyze large data arrays

Info

Publication number
AU2001287010A1
AU2001287010A1 AU2001287010A AU8701001A AU2001287010A1 AU 2001287010 A1 AU2001287010 A1 AU 2001287010A1 AU 2001287010 A AU2001287010 A AU 2001287010A AU 8701001 A AU8701001 A AU 8701001A AU 2001287010 A1 AU2001287010 A1 AU 2001287010A1
Authority
AU
Australia
Prior art keywords
large data
data arrays
statistical modeling
analyze large
analyze
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Abandoned
Application number
AU2001287010A
Inventor
Linda Breedan
Ross Prentice
Lue P. Zhao
Current Assignee (The listed assignees may be inaccurate. Google has not performed a legal analysis and makes no representation or warranty as to the accuracy of the list.)
Fred Hutchinson Cancer Center
Original Assignee
Fred Hutchinson Cancer Center
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Fred Hutchinson Cancer Center filed Critical Fred Hutchinson Cancer Center
Publication of AU2001287010A1 publication Critical patent/AU2001287010A1/en
Abandoned legal-status Critical Current

Links

Classifications

    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B25/00—ICT specially adapted for hybridisation; ICT specially adapted for gene or protein expression
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B25/00—ICT specially adapted for hybridisation; ICT specially adapted for gene or protein expression
    • G16B25/10—Gene or protein expression profiling; Expression-ratio estimation or normalisation
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B40/00—ICT specially adapted for biostatistics; ICT specially adapted for bioinformatics-related machine learning or data mining, e.g. knowledge discovery or pattern finding
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B40/00—ICT specially adapted for biostatistics; ICT specially adapted for bioinformatics-related machine learning or data mining, e.g. knowledge discovery or pattern finding
    • G16B40/10—Signal processing, e.g. from mass spectrometry [MS] or from PCR
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B40/00—ICT specially adapted for biostatistics; ICT specially adapted for bioinformatics-related machine learning or data mining, e.g. knowledge discovery or pattern finding
    • G16B40/30—Unsupervised data analysis
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16H—HEALTHCARE INFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR THE HANDLING OR PROCESSING OF MEDICAL OR HEALTHCARE DATA
    • G16H10/00—ICT specially adapted for the handling or processing of patient-related medical or healthcare data
    • G16H10/20—ICT specially adapted for the handling or processing of patient-related medical or healthcare data for electronic clinical trials or questionnaires
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16H—HEALTHCARE INFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR THE HANDLING OR PROCESSING OF MEDICAL OR HEALTHCARE DATA
    • G16H10/00—ICT specially adapted for the handling or processing of patient-related medical or healthcare data
    • G16H10/60—ICT specially adapted for the handling or processing of patient-related medical or healthcare data for patient-specific data, e.g. for electronic patient records

Landscapes

  • Health & Medical Sciences (AREA)
  • Engineering & Computer Science (AREA)
  • Physics & Mathematics (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Medical Informatics (AREA)
  • General Health & Medical Sciences (AREA)
  • Spectroscopy & Molecular Physics (AREA)
  • Theoretical Computer Science (AREA)
  • Evolutionary Biology (AREA)
  • Biotechnology (AREA)
  • Epidemiology (AREA)
  • Bioinformatics & Computational Biology (AREA)
  • Biophysics (AREA)
  • Public Health (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Data Mining & Analysis (AREA)
  • Computer Vision & Pattern Recognition (AREA)
  • Software Systems (AREA)
  • Bioethics (AREA)
  • Artificial Intelligence (AREA)
  • Evolutionary Computation (AREA)
  • Molecular Biology (AREA)
  • Databases & Information Systems (AREA)
  • Genetics & Genomics (AREA)
  • Primary Health Care (AREA)
  • Signal Processing (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
  • Complex Calculations (AREA)
  • Investigating Or Analysing Biological Materials (AREA)
  • Measurement Of Mechanical Vibrations Or Ultrasonic Waves (AREA)
AU2001287010A 2000-09-01 2001-08-30 Statistical modeling to analyze large data arrays Abandoned AU2001287010A1 (en)

Applications Claiming Priority (5)

Application Number Priority Date Filing Date Title
US22986600P 2000-09-01 2000-09-01
US60/229,866 2000-09-01
US28224501P 2001-04-06 2001-04-06
US60/282,245 2001-04-06
PCT/US2001/027273 WO2002019602A2 (en) 2000-09-01 2001-08-30 Statistical modeling to analyze large data arrays

Publications (1)

Publication Number Publication Date
AU2001287010A1 true AU2001287010A1 (en) 2002-03-13

Family

ID=26923683

Family Applications (1)

Application Number Title Priority Date Filing Date
AU2001287010A Abandoned AU2001287010A1 (en) 2000-09-01 2001-08-30 Statistical modeling to analyze large data arrays

Country Status (5)

Country Link
US (1) US20030219797A1 (en)
JP (1) JP2004521407A (en)
AU (1) AU2001287010A1 (en)
CA (1) CA2421221A1 (en)
WO (1) WO2002019602A2 (en)

Families Citing this family (38)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
EP1476748A2 (en) * 2002-02-11 2004-11-17 Syngenta Participations AG Gene function inferring using gene expression data
US7242989B2 (en) 2003-05-30 2007-07-10 Fisher-Rosemount Systems, Inc. Apparatus and method for batch property estimation
US20050010541A1 (en) * 2003-07-07 2005-01-13 Rietman Edward A. Method and system for computing categories and prediction of categories utilizing time-series classification data
JP4536445B2 (en) * 2004-07-26 2010-09-01 三菱電機株式会社 Data classification device
JP2006347701A (en) * 2005-06-16 2006-12-28 Komori Corp Sheet material presser
US20070226099A1 (en) * 2005-12-13 2007-09-27 General Electric Company System and method for predicting the financial health of a business entity
US20070136115A1 (en) * 2005-12-13 2007-06-14 Deniz Senturk Doganaksoy Statistical pattern recognition and analysis
EP2578702A1 (en) * 2006-02-16 2013-04-10 454 Life Sciences Corporation System and method for correcting primer extension errors in nucleic acid sequence data
US8364417B2 (en) * 2007-02-15 2013-01-29 454 Life Sciences Corporation System and method to correct out of phase errors in DNA sequencing data by use of a recursive algorithm
JP4555256B2 (en) * 2006-05-24 2010-09-29 Ｎｅｃソフト株式会社 Analysis method aiming at feature extraction and comparative classification of time-series gene expression data, and analysis apparatus based on the analysis method
US9330127B2 (en) * 2007-01-04 2016-05-03 Health Care Productivity, Inc. Methods and systems for automatic selection of classification and regression trees
US7412356B1 (en) * 2007-01-30 2008-08-12 Lawrence Livermore National Security, Llc Detection and quantification system for monitoring instruments
FI20085302A0 (en) * 2008-04-10 2008-04-10 Valtion Teknillinen Correction of measurements of biological signals from parallel measuring devices
US8090558B1 (en) * 2008-06-09 2012-01-03 Kla-Tencor Corporation Optical parametric model optimization
WO2011156707A2 (en) 2010-06-11 2011-12-15 Life Technologies Corporation Alternative nucleotide flows in sequencing-by-synthesis methods
US20130096878A1 (en) * 2010-06-24 2013-04-18 Valtion Teknillinen Tutkimuskeskus State inference in a heterogeneous system
US8666678B2 (en) 2010-10-27 2014-03-04 Life Technologies Corporation Predictive model for use in sequencing-by-synthesis
US10273540B2 (en) 2010-10-27 2019-04-30 Life Technologies Corporation Methods and apparatuses for estimating parameters in a predictive model for use in sequencing-by-synthesis
EP2659408B1 (en) 2010-12-29 2019-03-27 Life Technologies Corporation Time-warped background signal for sequencing-by-synthesis operations
US10241075B2 (en) 2010-12-30 2019-03-26 Life Technologies Corporation Methods, systems, and computer readable media for nucleic acid sequencing
US20130060482A1 (en) 2010-12-30 2013-03-07 Life Technologies Corporation Methods, systems, and computer readable media for making base calls in nucleic acid sequencing
US10146906B2 (en) 2010-12-30 2018-12-04 Life Technologies Corporation Models for analyzing data from sequencing-by-synthesis operations
EP3878975A1 (en) 2011-04-08 2021-09-15 Life Technologies Corporation Phase-protecting reagent flow orderings for use in sequencing-by-synthesis
US20150087537A1 (en) 2011-08-31 2015-03-26 Life Technologies Corporation Methods, Systems, Computer Readable Media, and Kits for Sample Identification
US10704164B2 (en) 2011-08-31 2020-07-07 Life Technologies Corporation Methods, systems, computer readable media, and kits for sample identification
US9646132B2 (en) 2012-05-11 2017-05-09 Life Technologies Corporation Models for analyzing data from sequencing-by-synthesis operations
US10329608B2 (en) 2012-10-10 2019-06-25 Life Technologies Corporation Methods, systems, and computer readable media for repeat sequencing
US20140296080A1 (en) 2013-03-14 2014-10-02 Life Technologies Corporation Methods, Systems, and Computer Readable Media for Evaluating Variant Likelihood
US11011273B2 (en) * 2013-06-28 2021-05-18 Nantomics, Llc Pathway analysis for identification of diagnostic tests
US10410739B2 (en) 2013-10-04 2019-09-10 Life Technologies Corporation Methods and systems for modeling phasing effects in sequencing using termination chemistry
US10676787B2 (en) 2014-10-13 2020-06-09 Life Technologies Corporation Methods, systems, and computer-readable media for accelerated base calling
EP4220645A3 (en) 2015-05-14 2023-11-08 Life Technologies Corporation Barcode sequences, and related systems and methods
US10619205B2 (en) 2016-05-06 2020-04-14 Life Technologies Corporation Combinatorial barcode sequences, and related systems and methods
WO2018217499A1 (en) 2017-05-24 2018-11-29 Covidien Lp Determining a limit of autoregulation
US11026586B2 (en) 2018-04-25 2021-06-08 Covidien Lp Determining changes to autoregulation
US10610164B2 (en) 2018-04-25 2020-04-07 Covidien Lp Determining changes to autoregulation
US10660530B2 (en) 2018-04-25 2020-05-26 Covidien Lp Determining changes to autoregulation
US10674964B2 (en) 2018-04-25 2020-06-09 Covidien Lp Determining changes to autoregulation

Family Cites Families (2)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US5639619A (en) * 1994-10-13 1997-06-17 Regents Of The University Of California Screening assay for anti-HIV drugs using the Vpr gene
US5909278A (en) * 1996-07-29 1999-06-01 The Regents Of The University Of California Time-resolved fluorescence decay measurements for flowing particles

Also Published As

Publication number Publication date
WO2002019602A3 (en) 2004-11-25
CA2421221A1 (en) 2002-03-07
JP2004521407A (en) 2004-07-15
US20030219797A1 (en) 2003-11-27
WO2002019602A2 (en) 2002-03-07

Similar Documents

Publication Publication Date Title
AU2001287010A1 (en) Statistical modeling to analyze large data arrays
AU2001241848A1 (en) Methods for manipulating data in multiple dimensions
AU2001231064A1 (en) Data analysis software
AU2000264879A1 (en) Reconfigurable computer networks
AU2001272014A1 (en) Distributed simulation
AU4125001A (en) Computer case
AU2003207784A1 (en) Market response modeling
AU2002228739A1 (en) Integrating heterogeneous data and tools
AU2003276456A1 (en) Optimizing well system models
AU2003263867A1 (en) Free fall simulator
AU2003266320A1 (en) Secure access to a subscription module
GB0027301D0 (en) Data management system
AU2003295260A1 (en) Memory management in a computer system using different swapping criteria
AU2001242865A1 (en) Motion simulator with exchangeable unit
AU2002348568A8 (en) Statistical data analysis tool
AU2002217952A1 (en) Offline data collection
AU2002219116A1 (en) Data bus
AU2002219817A1 (en) Relevance networks for visualizing clusters in gene expression data
AU2003264781A1 (en) Dynamic access to data
GB2368390B (en) Analysing data
AU2002212323A1 (en) Computer mouse
AU2000226677A1 (en) Configurable statistical data structure
AU2001296039A1 (en) Computer
AU2003223076A1 (en) Linking data objects to a project development system
AUPR892001A0 (en) Analysing spots in a 2-d array