AU2001276606A1 - Pseudo-metalloproteins, corresponding preparation and use as biosensors - Google Patents
Pseudo-metalloproteins, corresponding preparation and use as biosensorsInfo
- Publication number
- AU2001276606A1 AU2001276606A1 AU2001276606A AU2001276606A AU2001276606A1 AU 2001276606 A1 AU2001276606 A1 AU 2001276606A1 AU 2001276606 A AU2001276606 A AU 2001276606A AU 2001276606 A AU2001276606 A AU 2001276606A AU 2001276606 A1 AU2001276606 A1 AU 2001276606A1
- Authority
- AU
- Australia
- Prior art keywords
- amino acid
- natural
- compound according
- group
- another
- Prior art date
- Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
- Granted
Links
- 238000002360 preparation method Methods 0.000 title claims description 9
- 229940024606 amino acid Drugs 0.000 claims description 82
- 235000001014 amino acid Nutrition 0.000 claims description 81
- 150000001413 amino acids Chemical class 0.000 claims description 80
- 150000001875 compounds Chemical class 0.000 claims description 41
- 238000000034 method Methods 0.000 claims description 32
- 108090000765 processed proteins & peptides Proteins 0.000 claims description 32
- DHMQDGOQFOQNFH-UHFFFAOYSA-N Glycine Chemical compound NCC(O)=O DHMQDGOQFOQNFH-UHFFFAOYSA-N 0.000 claims description 21
- AYFVYJQAPQTCCC-UHFFFAOYSA-N THREONINE Chemical compound CC(O)C(N)C(O)=O AYFVYJQAPQTCCC-UHFFFAOYSA-N 0.000 claims description 18
- AYFVYJQAPQTCCC-GBXIJSLDSA-N L-threonine Chemical compound C[C@@H](O)[C@H](N)C(O)=O AYFVYJQAPQTCCC-GBXIJSLDSA-N 0.000 claims description 17
- MTCFGRXMJLQNBG-REOHCLBHSA-N (2S)-2-Amino-3-hydroxypropansäure Chemical compound OC[C@H](N)C(O)=O MTCFGRXMJLQNBG-REOHCLBHSA-N 0.000 claims description 16
- WHUUTDBJXJRKMK-UHFFFAOYSA-N Glutamic acid Natural products OC(=O)C(N)CCC(O)=O WHUUTDBJXJRKMK-UHFFFAOYSA-N 0.000 claims description 16
- CKLJMWTZIZZHCS-REOHCLBHSA-N L-aspartic acid Chemical compound OC(=O)[C@@H](N)CC(O)=O CKLJMWTZIZZHCS-REOHCLBHSA-N 0.000 claims description 16
- WHUUTDBJXJRKMK-VKHMYHEASA-N L-glutamic acid Chemical compound OC(=O)[C@@H](N)CCC(O)=O WHUUTDBJXJRKMK-VKHMYHEASA-N 0.000 claims description 15
- KDXKERNSBIXSRK-YFKPBYRVSA-N L-lysine Chemical compound NCCCC[C@H](N)C(O)=O KDXKERNSBIXSRK-YFKPBYRVSA-N 0.000 claims description 14
- KZSNJWFQEVHDMF-UHFFFAOYSA-N Valine Chemical compound CC(C)C(N)C(O)=O KZSNJWFQEVHDMF-UHFFFAOYSA-N 0.000 claims description 14
- 230000002209 hydrophobic effect Effects 0.000 claims description 14
- 102000004196 processed proteins & peptides Human genes 0.000 claims description 14
- 125000000524 functional group Chemical group 0.000 claims description 13
- -1 Allo-lle Chemical compound 0.000 claims description 12
- KDXKERNSBIXSRK-UHFFFAOYSA-N Lysine Natural products NCCCCC(N)C(O)=O KDXKERNSBIXSRK-UHFFFAOYSA-N 0.000 claims description 12
- 239000002253 acid Substances 0.000 claims description 12
- 239000012491 analyte Substances 0.000 claims description 11
- 235000018102 proteins Nutrition 0.000 claims description 11
- 102000004169 proteins and genes Human genes 0.000 claims description 11
- 108090000623 proteins and genes Proteins 0.000 claims description 11
- 239000000427 antigen Substances 0.000 claims description 10
- 108091007433 antigens Proteins 0.000 claims description 10
- 102000036639 antigens Human genes 0.000 claims description 10
- DCXYFEDJOCDNAF-REOHCLBHSA-N L-asparagine Chemical compound OC(=O)[C@@H](N)CC(N)=O DCXYFEDJOCDNAF-REOHCLBHSA-N 0.000 claims description 9
- 238000005859 coupling reaction Methods 0.000 claims description 9
- YBJHBAHKTGYVGT-ZKWXMUAHSA-N (+)-Biotin Chemical compound N1C(=O)N[C@@H]2[C@H](CCCCC(=O)O)SC[C@@H]21 YBJHBAHKTGYVGT-ZKWXMUAHSA-N 0.000 claims description 8
- 230000008878 coupling Effects 0.000 claims description 8
- 238000010168 coupling process Methods 0.000 claims description 8
- 239000003814 drug Substances 0.000 claims description 8
- OUYCCCASQSFEME-QMMMGPOBSA-N L-tyrosine Chemical compound OC(=O)[C@@H](N)CC1=CC=C(O)C=C1 OUYCCCASQSFEME-QMMMGPOBSA-N 0.000 claims description 7
- 229940079593 drug Drugs 0.000 claims description 7
- 229910021645 metal ion Inorganic materials 0.000 claims description 7
- XUJNEKJLAYXESH-REOHCLBHSA-N L-Cysteine Chemical compound SC[C@H](N)C(O)=O XUJNEKJLAYXESH-REOHCLBHSA-N 0.000 claims description 6
- COLNVLDHVKWLRT-QMMMGPOBSA-N L-phenylalanine Chemical compound OC(=O)[C@@H](N)CC1=CC=CC=C1 COLNVLDHVKWLRT-QMMMGPOBSA-N 0.000 claims description 6
- 229910052799 carbon Inorganic materials 0.000 claims description 6
- 239000000126 substance Substances 0.000 claims description 6
- 239000000758 substrate Substances 0.000 claims description 6
- QNAYBMKLOCPYGJ-REOHCLBHSA-N L-alanine Chemical compound C[C@H](N)C(O)=O QNAYBMKLOCPYGJ-REOHCLBHSA-N 0.000 claims description 5
- ROHFNLRQFUQHCH-YFKPBYRVSA-N L-leucine Chemical compound CC(C)C[C@H](N)C(O)=O ROHFNLRQFUQHCH-YFKPBYRVSA-N 0.000 claims description 5
- 239000004473 Threonine Substances 0.000 claims description 5
- 235000004279 alanine Nutrition 0.000 claims description 5
- 229960002685 biotin Drugs 0.000 claims description 5
- 239000011616 biotin Substances 0.000 claims description 5
- 210000004899 c-terminal region Anatomy 0.000 claims description 5
- 125000002887 hydroxy group Chemical group [H]O* 0.000 claims description 5
- 239000000543 intermediate Substances 0.000 claims description 5
- 229910052742 iron Inorganic materials 0.000 claims description 5
- 125000001360 methionine group Chemical group N[C@@H](CCSC)C(=O)* 0.000 claims description 5
- OUYCCCASQSFEME-UHFFFAOYSA-N tyrosine Natural products OC(=O)C(N)CC1=CC=C(O)C=C1 OUYCCCASQSFEME-UHFFFAOYSA-N 0.000 claims description 5
- WOXWUZCRWJWTRT-UHFFFAOYSA-N 1-amino-1-cyclohexanecarboxylic acid Chemical compound OC(=O)C1(N)CCCCC1 WOXWUZCRWJWTRT-UHFFFAOYSA-N 0.000 claims description 4
- OKTJSMMVPCPJKN-UHFFFAOYSA-N Carbon Chemical compound [C] OKTJSMMVPCPJKN-UHFFFAOYSA-N 0.000 claims description 4
- 102000004190 Enzymes Human genes 0.000 claims description 4
- 108090000790 Enzymes Proteins 0.000 claims description 4
- PMMYEEVYMWASQN-DMTCNVIQSA-N Hydroxyproline Chemical compound O[C@H]1CN[C@H](C(O)=O)C1 PMMYEEVYMWASQN-DMTCNVIQSA-N 0.000 claims description 4
- ZDXPYRJPNDTMRX-VKHMYHEASA-N L-glutamine Chemical compound OC(=O)[C@@H](N)CCC(N)=O ZDXPYRJPNDTMRX-VKHMYHEASA-N 0.000 claims description 4
- LRQKBLKVPFOOQJ-YFKPBYRVSA-N L-norleucine Chemical compound CCCC[C@H]([NH3+])C([O-])=O LRQKBLKVPFOOQJ-YFKPBYRVSA-N 0.000 claims description 4
- 125000000174 L-prolyl group Chemical group [H]N1C([H])([H])C([H])([H])C([H])([H])[C@@]1([H])C(*)=O 0.000 claims description 4
- MTCFGRXMJLQNBG-UHFFFAOYSA-N Serine Natural products OCC(N)C(O)=O MTCFGRXMJLQNBG-UHFFFAOYSA-N 0.000 claims description 4
- 235000020958 biotin Nutrition 0.000 claims description 4
- 229910052802 copper Inorganic materials 0.000 claims description 4
- UHBYWPGGCSDKFX-VKHMYHEASA-N gamma-carboxy-L-glutamic acid Chemical compound OC(=O)[C@@H](N)CC(C(O)=O)C(O)=O UHBYWPGGCSDKFX-VKHMYHEASA-N 0.000 claims description 4
- 229910052748 manganese Inorganic materials 0.000 claims description 4
- 239000002184 metal Substances 0.000 claims description 4
- 229910052751 metal Inorganic materials 0.000 claims description 4
- 239000000203 mixture Substances 0.000 claims description 4
- 229910052759 nickel Inorganic materials 0.000 claims description 4
- 108020003175 receptors Proteins 0.000 claims description 4
- 102000005962 receptors Human genes 0.000 claims description 4
- BVAUMRCGVHUWOZ-ZETCQYMHSA-N (2s)-2-(cyclohexylazaniumyl)propanoate Chemical compound OC(=O)[C@H](C)NC1CCCCC1 BVAUMRCGVHUWOZ-ZETCQYMHSA-N 0.000 claims description 3
- WAMWSIDTKSNDCU-ZETCQYMHSA-N (2s)-2-azaniumyl-2-cyclohexylacetate Chemical compound OC(=O)[C@@H](N)C1CCCCC1 WAMWSIDTKSNDCU-ZETCQYMHSA-N 0.000 claims description 3
- PAJPWUMXBYXFCZ-UHFFFAOYSA-N 1-aminocyclopropanecarboxylic acid Chemical compound OC(=O)C1(N)CC1 PAJPWUMXBYXFCZ-UHFFFAOYSA-N 0.000 claims description 3
- OMGHIGVFLOPEHJ-UHFFFAOYSA-N 2,5-dihydro-1h-pyrrol-1-ium-2-carboxylate Chemical compound OC(=O)C1NCC=C1 OMGHIGVFLOPEHJ-UHFFFAOYSA-N 0.000 claims description 3
- KFLKTDAONDZLAN-UHFFFAOYSA-N 2-(n-phenylanilino)acetic acid Chemical compound C=1C=CC=CC=1N(CC(=O)O)C1=CC=CC=C1 KFLKTDAONDZLAN-UHFFFAOYSA-N 0.000 claims description 3
- CZHCGMZJLLOYJW-UHFFFAOYSA-N 2-amino-2-propylpentanoic acid Chemical compound CCCC(N)(C(O)=O)CCC CZHCGMZJLLOYJW-UHFFFAOYSA-N 0.000 claims description 3
- 239000004475 Arginine Substances 0.000 claims description 3
- DCXYFEDJOCDNAF-UHFFFAOYSA-N Asparagine Natural products OC(=O)C(N)CC(N)=O DCXYFEDJOCDNAF-UHFFFAOYSA-N 0.000 claims description 3
- 239000004471 Glycine Substances 0.000 claims description 3
- AHLPHDHHMVZTML-BYPYZUCNSA-N L-Ornithine Chemical class NCCC[C@H](N)C(O)=O AHLPHDHHMVZTML-BYPYZUCNSA-N 0.000 claims description 3
- ONIBWKKTOPOVIA-BYPYZUCNSA-N L-Proline Chemical compound OC(=O)[C@@H]1CCCN1 ONIBWKKTOPOVIA-BYPYZUCNSA-N 0.000 claims description 3
- AGPKZVBTJJNPAG-UHNVWZDZSA-N L-allo-Isoleucine Chemical compound CC[C@@H](C)[C@H](N)C(O)=O AGPKZVBTJJNPAG-UHNVWZDZSA-N 0.000 claims description 3
- ODKSFYDXXFIFQN-BYPYZUCNSA-P L-argininium(2+) Chemical compound NC(=[NH2+])NCCC[C@H]([NH3+])C(O)=O ODKSFYDXXFIFQN-BYPYZUCNSA-P 0.000 claims description 3
- HNDVDQJCIGZPNO-YFKPBYRVSA-N L-histidine Chemical compound OC(=O)[C@@H](N)CC1=CN=CN1 HNDVDQJCIGZPNO-YFKPBYRVSA-N 0.000 claims description 3
- HXEACLLIILLPRG-YFKPBYRVSA-N L-pipecolic acid Chemical compound [O-]C(=O)[C@@H]1CCCC[NH2+]1 HXEACLLIILLPRG-YFKPBYRVSA-N 0.000 claims description 3
- DZLNHFMRPBPULJ-VKHMYHEASA-N L-thioproline Chemical compound OC(=O)[C@@H]1CSCN1 DZLNHFMRPBPULJ-VKHMYHEASA-N 0.000 claims description 3
- KZSNJWFQEVHDMF-BYPYZUCNSA-N L-valine Chemical compound CC(C)[C@H](N)C(O)=O KZSNJWFQEVHDMF-BYPYZUCNSA-N 0.000 claims description 3
- ROHFNLRQFUQHCH-UHFFFAOYSA-N Leucine Natural products CC(C)CC(N)C(O)=O ROHFNLRQFUQHCH-UHFFFAOYSA-N 0.000 claims description 3
- 239000004472 Lysine Substances 0.000 claims description 3
- SGXDXUYKISDCAZ-UHFFFAOYSA-N N,N-diethylglycine Chemical compound CCN(CC)CC(O)=O SGXDXUYKISDCAZ-UHFFFAOYSA-N 0.000 claims description 3
- ONIBWKKTOPOVIA-UHFFFAOYSA-N Proline Natural products OC(=O)C1CCCN1 ONIBWKKTOPOVIA-UHFFFAOYSA-N 0.000 claims description 3
- QIVBCDIJIAJPQS-UHFFFAOYSA-N Tryptophan Natural products C1=CC=C2C(CC(N)C(O)=O)=CNC2=C1 QIVBCDIJIAJPQS-UHFFFAOYSA-N 0.000 claims description 3
- 150000001412 amines Chemical class 0.000 claims description 3
- ODKSFYDXXFIFQN-UHFFFAOYSA-N arginine Natural products OC(=O)C(N)CCCNC(N)=N ODKSFYDXXFIFQN-UHFFFAOYSA-N 0.000 claims description 3
- 235000009582 asparagine Nutrition 0.000 claims description 3
- 229960001230 asparagine Drugs 0.000 claims description 3
- 235000003704 aspartic acid Nutrition 0.000 claims description 3
- KVVMXWRFYAGASO-UHFFFAOYSA-N azetidine-1-carboxylic acid Chemical compound OC(=O)N1CCC1 KVVMXWRFYAGASO-UHFFFAOYSA-N 0.000 claims description 3
- OQFSQFPPLPISGP-UHFFFAOYSA-N beta-carboxyaspartic acid Natural products OC(=O)C(N)C(C(O)=O)C(O)=O OQFSQFPPLPISGP-UHFFFAOYSA-N 0.000 claims description 3
- 239000013060 biological fluid Substances 0.000 claims description 3
- 238000006243 chemical reaction Methods 0.000 claims description 3
- PMMYEEVYMWASQN-UHFFFAOYSA-N dl-hydroxyproline Natural products OC1C[NH2+]C(C([O-])=O)C1 PMMYEEVYMWASQN-UHFFFAOYSA-N 0.000 claims description 3
- 239000003344 environmental pollutant Substances 0.000 claims description 3
- 230000002255 enzymatic effect Effects 0.000 claims description 3
- 239000012634 fragment Substances 0.000 claims description 3
- 235000013922 glutamic acid Nutrition 0.000 claims description 3
- 239000004220 glutamic acid Substances 0.000 claims description 3
- ZDXPYRJPNDTMRX-UHFFFAOYSA-N glutamine Natural products OC(=O)C(N)CCC(N)=O ZDXPYRJPNDTMRX-UHFFFAOYSA-N 0.000 claims description 3
- 235000004554 glutamine Nutrition 0.000 claims description 3
- HNDVDQJCIGZPNO-UHFFFAOYSA-N histidine Natural products OC(=O)C(N)CC1=CN=CN1 HNDVDQJCIGZPNO-UHFFFAOYSA-N 0.000 claims description 3
- 235000014304 histidine Nutrition 0.000 claims description 3
- 229960002591 hydroxyproline Drugs 0.000 claims description 3
- 238000000338 in vitro Methods 0.000 claims description 3
- HXEACLLIILLPRG-RXMQYKEDSA-N l-pipecolic acid Natural products OC(=O)[C@H]1CCCCN1 HXEACLLIILLPRG-RXMQYKEDSA-N 0.000 claims description 3
- 230000037353 metabolic pathway Effects 0.000 claims description 3
- 229930182817 methionine Natural products 0.000 claims description 3
- 102000039446 nucleic acids Human genes 0.000 claims description 3
- 108020004707 nucleic acids Proteins 0.000 claims description 3
- 150000007523 nucleic acids Chemical class 0.000 claims description 3
- COLNVLDHVKWLRT-UHFFFAOYSA-N phenylalanine Natural products OC(=O)C(N)CC1=CC=CC=C1 COLNVLDHVKWLRT-UHFFFAOYSA-N 0.000 claims description 3
- 231100000719 pollutant Toxicity 0.000 claims description 3
- 239000003755 preservative agent Substances 0.000 claims description 3
- 235000013930 proline Nutrition 0.000 claims description 3
- 239000000018 receptor agonist Substances 0.000 claims description 3
- 229940044601 receptor agonist Drugs 0.000 claims description 3
- 239000002464 receptor antagonist Substances 0.000 claims description 3
- 229940044551 receptor antagonist Drugs 0.000 claims description 3
- 239000000523 sample Substances 0.000 claims description 3
- 231100000331 toxic Toxicity 0.000 claims description 3
- 230000002588 toxic effect Effects 0.000 claims description 3
- FGMPLJWBKKVCDB-UHFFFAOYSA-N trans-L-hydroxy-proline Natural products ON1CCCC1C(O)=O FGMPLJWBKKVCDB-UHFFFAOYSA-N 0.000 claims description 3
- 239000004474 valine Substances 0.000 claims description 3
- XLYOFNOQVPJJNP-UHFFFAOYSA-N water Substances O XLYOFNOQVPJJNP-UHFFFAOYSA-N 0.000 claims description 3
- UKAUYVFTDYCKQA-UHFFFAOYSA-N -2-Amino-4-hydroxybutanoic acid Natural products OC(=O)C(N)CCO UKAUYVFTDYCKQA-UHFFFAOYSA-N 0.000 claims description 2
- 125000001622 2-naphthyl group Chemical group [H]C1=C([H])C([H])=C2C([H])=C(*)C([H])=C([H])C2=C1[H] 0.000 claims description 2
- SNDPXSYFESPGGJ-BYPYZUCNSA-N L-2-aminopentanoic acid Chemical compound CCC[C@H](N)C(O)=O SNDPXSYFESPGGJ-BYPYZUCNSA-N 0.000 claims description 2
- QUOGESRFPZDMMT-UHFFFAOYSA-N L-Homoarginine Natural products OC(=O)C(N)CCCCNC(N)=N QUOGESRFPZDMMT-UHFFFAOYSA-N 0.000 claims description 2
- 125000000998 L-alanino group Chemical group [H]N([*])[C@](C([H])([H])[H])([H])C(=O)O[H] 0.000 claims description 2
- QUOGESRFPZDMMT-YFKPBYRVSA-N L-homoarginine Chemical compound OC(=O)[C@@H](N)CCCCNC(N)=N QUOGESRFPZDMMT-YFKPBYRVSA-N 0.000 claims description 2
- UKAUYVFTDYCKQA-VKHMYHEASA-N L-homoserine Chemical compound OC(=O)[C@@H](N)CCO UKAUYVFTDYCKQA-VKHMYHEASA-N 0.000 claims description 2
- AGPKZVBTJJNPAG-WHFBIAKZSA-N L-isoleucine Chemical compound CC[C@H](C)[C@H](N)C(O)=O AGPKZVBTJJNPAG-WHFBIAKZSA-N 0.000 claims description 2
- FFEARJCKVFRZRR-BYPYZUCNSA-N L-methionine Chemical compound CSCC[C@H](N)C(O)=O FFEARJCKVFRZRR-BYPYZUCNSA-N 0.000 claims description 2
- SNDPXSYFESPGGJ-UHFFFAOYSA-N L-norVal-OH Natural products CCCC(N)C(O)=O SNDPXSYFESPGGJ-UHFFFAOYSA-N 0.000 claims description 2
- QIVBCDIJIAJPQS-VIFPVBQESA-N L-tryptophane Chemical compound C1=CC=C2C(C[C@H](N)C(O)=O)=CNC2=C1 QIVBCDIJIAJPQS-VIFPVBQESA-N 0.000 claims description 2
- 125000000510 L-tryptophano group Chemical group [H]C1=C([H])C([H])=C2N([H])C([H])=C(C([H])([H])[C@@]([H])(C(O[H])=O)N([H])[*])C2=C1[H] 0.000 claims description 2
- 108091034117 Oligonucleotide Proteins 0.000 claims description 2
- 229910052771 Terbium Inorganic materials 0.000 claims description 2
- 229910052769 Ytterbium Inorganic materials 0.000 claims description 2
- 238000005903 acid hydrolysis reaction Methods 0.000 claims description 2
- 239000013626 chemical specie Substances 0.000 claims description 2
- 229910052804 chromium Inorganic materials 0.000 claims description 2
- XUJNEKJLAYXESH-UHFFFAOYSA-N cysteine Natural products SCC(N)C(O)=O XUJNEKJLAYXESH-UHFFFAOYSA-N 0.000 claims description 2
- 235000018417 cysteine Nutrition 0.000 claims description 2
- 239000003112 inhibitor Substances 0.000 claims description 2
- 229910052741 iridium Inorganic materials 0.000 claims description 2
- 238000002955 isolation Methods 0.000 claims description 2
- AGPKZVBTJJNPAG-UHFFFAOYSA-N isoleucine Natural products CCC(C)C(N)C(O)=O AGPKZVBTJJNPAG-UHFFFAOYSA-N 0.000 claims description 2
- 229960000310 isoleucine Drugs 0.000 claims description 2
- 229910052750 molybdenum Inorganic materials 0.000 claims description 2
- 229910052757 nitrogen Inorganic materials 0.000 claims description 2
- 229910052762 osmium Inorganic materials 0.000 claims description 2
- 229910052760 oxygen Inorganic materials 0.000 claims description 2
- 229910052763 palladium Inorganic materials 0.000 claims description 2
- 229910052697 platinum Inorganic materials 0.000 claims description 2
- 229910052703 rhodium Inorganic materials 0.000 claims description 2
- 125000006850 spacer group Chemical group 0.000 claims description 2
- 229910052717 sulfur Inorganic materials 0.000 claims description 2
- 150000003573 thiols Chemical group 0.000 claims description 2
- 229910052719 titanium Inorganic materials 0.000 claims description 2
- 229910052720 vanadium Inorganic materials 0.000 claims description 2
- FFFHZYDWPBMWHY-VKHMYHEASA-N L-homocysteine Chemical class OC(=O)[C@@H](N)CCS FFFHZYDWPBMWHY-VKHMYHEASA-N 0.000 claims 1
- 125000000393 L-methionino group Chemical group [H]OC(=O)[C@@]([H])(N([H])[*])C([H])([H])C(SC([H])([H])[H])([H])[H] 0.000 claims 1
- 239000002516 radical scavenger Substances 0.000 claims 1
- 150000003355 serines Chemical class 0.000 claims 1
- 230000015572 biosynthetic process Effects 0.000 description 21
- 238000003786 synthesis reaction Methods 0.000 description 19
- 239000000047 product Substances 0.000 description 13
- 238000004458 analytical method Methods 0.000 description 12
- ZMXDDKWLCZADIW-UHFFFAOYSA-N N,N-Dimethylformamide Chemical compound CN(C)C=O ZMXDDKWLCZADIW-UHFFFAOYSA-N 0.000 description 11
- 239000000243 solution Substances 0.000 description 11
- 238000010647 peptide synthesis reaction Methods 0.000 description 8
- 239000007790 solid phase Substances 0.000 description 8
- XEEYBQQBJWHFJM-UHFFFAOYSA-N iron Substances [Fe] XEEYBQQBJWHFJM-UHFFFAOYSA-N 0.000 description 7
- 238000001514 detection method Methods 0.000 description 6
- 239000011347 resin Substances 0.000 description 6
- 229920005989 resin Polymers 0.000 description 6
- 125000003088 (fluoren-9-ylmethoxy)carbonyl group Chemical group 0.000 description 5
- YMWUJEATGCHHMB-UHFFFAOYSA-N Dichloromethane Chemical compound ClCCl YMWUJEATGCHHMB-UHFFFAOYSA-N 0.000 description 5
- 108010063312 Metalloproteins Proteins 0.000 description 5
- 102000010750 Metalloproteins Human genes 0.000 description 5
- JGFZNNIVVJXRND-UHFFFAOYSA-N N,N-Diisopropylethylamine (DIPEA) Chemical compound CCN(C(C)C)C(C)C JGFZNNIVVJXRND-UHFFFAOYSA-N 0.000 description 5
- 238000005516 engineering process Methods 0.000 description 5
- 125000000999 tert-butyl group Chemical group [H]C([H])([H])C(*)(C([H])([H])[H])C([H])([H])[H] 0.000 description 5
- FUOOLUPWFVMBKG-UHFFFAOYSA-N 2-Aminoisobutyric acid Chemical compound CC(C)(N)C(O)=O FUOOLUPWFVMBKG-UHFFFAOYSA-N 0.000 description 4
- 229940126062 Compound A Drugs 0.000 description 4
- NLDMNSXOCDLTTB-UHFFFAOYSA-N Heterophylliin A Natural products O1C2COC(=O)C3=CC(O)=C(O)C(O)=C3C3=C(O)C(O)=C(O)C=C3C(=O)OC2C(OC(=O)C=2C=C(O)C(O)=C(O)C=2)C(O)C1OC(=O)C1=CC(O)=C(O)C(O)=C1 NLDMNSXOCDLTTB-UHFFFAOYSA-N 0.000 description 4
- 239000007864 aqueous solution Substances 0.000 description 4
- 239000012043 crude product Substances 0.000 description 4
- 238000004128 high performance liquid chromatography Methods 0.000 description 4
- 230000026683 transduction Effects 0.000 description 4
- 238000010361 transduction Methods 0.000 description 4
- DTQVDTLACAAQTR-UHFFFAOYSA-N trifluoroacetic acid Substances OC(=O)C(F)(F)F DTQVDTLACAAQTR-UHFFFAOYSA-N 0.000 description 4
- 239000007821 HATU Substances 0.000 description 3
- NQRYJNQNLNOLGT-UHFFFAOYSA-N Piperidine Chemical compound C1CCNCC1 NQRYJNQNLNOLGT-UHFFFAOYSA-N 0.000 description 3
- HEMHJVSKTPXQMS-UHFFFAOYSA-M Sodium hydroxide Chemical compound [OH-].[Na+] HEMHJVSKTPXQMS-UHFFFAOYSA-M 0.000 description 3
- UCMIRNVEIXFBKS-UHFFFAOYSA-N beta-alanine Chemical compound NCCC(O)=O UCMIRNVEIXFBKS-UHFFFAOYSA-N 0.000 description 3
- 125000003178 carboxy group Chemical group [H]OC(*)=O 0.000 description 3
- 238000013461 design Methods 0.000 description 3
- 238000002848 electrochemical method Methods 0.000 description 3
- RAXXELZNTBOGNW-UHFFFAOYSA-N imidazole Natural products C1=CNC=N1 RAXXELZNTBOGNW-UHFFFAOYSA-N 0.000 description 3
- 230000007246 mechanism Effects 0.000 description 3
- 230000003647 oxidation Effects 0.000 description 3
- 238000007254 oxidation reaction Methods 0.000 description 3
- 230000001012 protector Effects 0.000 description 3
- 239000000700 radioactive tracer Substances 0.000 description 3
- 238000006467 substitution reaction Methods 0.000 description 3
- VHJLVAABSRFDPM-UHFFFAOYSA-N 1,4-dithiothreitol Chemical compound SCC(O)C(O)CS VHJLVAABSRFDPM-UHFFFAOYSA-N 0.000 description 2
- JJMDCOVWQOJGCB-UHFFFAOYSA-N 5-aminopentanoic acid Chemical compound [NH3+]CCCCC([O-])=O JJMDCOVWQOJGCB-UHFFFAOYSA-N 0.000 description 2
- QOSSAOTZNIDXMA-UHFFFAOYSA-N Dicylcohexylcarbodiimide Chemical compound C1CCCCC1N=C=NC1CCCCC1 QOSSAOTZNIDXMA-UHFFFAOYSA-N 0.000 description 2
- RTZKZFJDLAIYFH-UHFFFAOYSA-N Diethyl ether Chemical compound CCOCC RTZKZFJDLAIYFH-UHFFFAOYSA-N 0.000 description 2
- 108091093037 Peptide nucleic acid Proteins 0.000 description 2
- XUIMIQQOPSSXEZ-UHFFFAOYSA-N Silicon Chemical compound [Si] XUIMIQQOPSSXEZ-UHFFFAOYSA-N 0.000 description 2
- 238000010521 absorption reaction Methods 0.000 description 2
- 230000010933 acylation Effects 0.000 description 2
- 238000005917 acylation reaction Methods 0.000 description 2
- 150000001371 alpha-amino acids Chemical class 0.000 description 2
- 235000008206 alpha-amino acids Nutrition 0.000 description 2
- 125000003277 amino group Chemical group 0.000 description 2
- 238000012512 characterization method Methods 0.000 description 2
- 238000010276 construction Methods 0.000 description 2
- 239000013058 crude material Substances 0.000 description 2
- 238000000835 electrochemical detection Methods 0.000 description 2
- 238000001840 matrix-assisted laser desorption--ionisation time-of-flight mass spectrometry Methods 0.000 description 2
- 238000005259 measurement Methods 0.000 description 2
- 230000003287 optical effect Effects 0.000 description 2
- 229920002401 polyacrylamide Polymers 0.000 description 2
- 239000000843 powder Substances 0.000 description 2
- 238000004007 reversed phase HPLC Methods 0.000 description 2
- FSYKKLYZXJSNPZ-UHFFFAOYSA-N sarcosine Chemical group C[NH2+]CC([O-])=O FSYKKLYZXJSNPZ-UHFFFAOYSA-N 0.000 description 2
- 230000035945 sensitivity Effects 0.000 description 2
- 229910052710 silicon Inorganic materials 0.000 description 2
- 239000010703 silicon Substances 0.000 description 2
- 239000007787 solid Substances 0.000 description 2
- 238000010189 synthetic method Methods 0.000 description 2
- 238000000870 ultraviolet spectroscopy Methods 0.000 description 2
- QDZOEBFLNHCSSF-PFFBOGFISA-N (2S)-2-[[(2R)-2-[[(2S)-1-[(2S)-6-amino-2-[[(2S)-1-[(2R)-2-amino-5-carbamimidamidopentanoyl]pyrrolidine-2-carbonyl]amino]hexanoyl]pyrrolidine-2-carbonyl]amino]-3-(1H-indol-3-yl)propanoyl]amino]-N-[(2R)-1-[[(2S)-1-[[(2R)-1-[[(2S)-1-[[(2S)-1-amino-4-methyl-1-oxopentan-2-yl]amino]-4-methyl-1-oxopentan-2-yl]amino]-3-(1H-indol-3-yl)-1-oxopropan-2-yl]amino]-1-oxo-3-phenylpropan-2-yl]amino]-3-(1H-indol-3-yl)-1-oxopropan-2-yl]pentanediamide Chemical compound C([C@@H](C(=O)N[C@H](CC=1C2=CC=CC=C2NC=1)C(=O)N[C@@H](CC(C)C)C(=O)N[C@@H](CC(C)C)C(N)=O)NC(=O)[C@@H](CC=1C2=CC=CC=C2NC=1)NC(=O)[C@H](CCC(N)=O)NC(=O)[C@@H](CC=1C2=CC=CC=C2NC=1)NC(=O)[C@H]1N(CCC1)C(=O)[C@H](CCCCN)NC(=O)[C@H]1N(CCC1)C(=O)[C@H](N)CCCNC(N)=N)C1=CC=CC=C1 QDZOEBFLNHCSSF-PFFBOGFISA-N 0.000 description 1
- QHSCIWIRXWFIGH-LURJTMIESA-N (2s)-2-amino-2-methylpentanedioic acid Chemical group OC(=O)[C@](N)(C)CCC(O)=O QHSCIWIRXWFIGH-LURJTMIESA-N 0.000 description 1
- VVQIIIAZJXTLRE-QMMMGPOBSA-N (2s)-2-amino-6-[(2-methylpropan-2-yl)oxycarbonylamino]hexanoic acid Chemical compound CC(C)(C)OC(=O)NCCCC[C@H](N)C(O)=O VVQIIIAZJXTLRE-QMMMGPOBSA-N 0.000 description 1
- OIOAKXPMBIZAHL-LURJTMIESA-N (2s)-2-azaniumyl-5-[(2-methylpropan-2-yl)oxy]-5-oxopentanoate Chemical compound CC(C)(C)OC(=O)CC[C@H](N)C(O)=O OIOAKXPMBIZAHL-LURJTMIESA-N 0.000 description 1
- TYAFIFFKPSWZRM-HYXAFXHYSA-N (z)-2-amino-4-methylpent-2-enoic acid Chemical group CC(C)\C=C(/N)C(O)=O TYAFIFFKPSWZRM-HYXAFXHYSA-N 0.000 description 1
- DHBXNPKRAUYBTH-UHFFFAOYSA-N 1,1-ethanedithiol Chemical compound CC(S)S DHBXNPKRAUYBTH-UHFFFAOYSA-N 0.000 description 1
- ADFXKUOMJKEIND-UHFFFAOYSA-N 1,3-dicyclohexylurea Chemical group C1CCCCC1NC(=O)NC1CCCCC1 ADFXKUOMJKEIND-UHFFFAOYSA-N 0.000 description 1
- AZUYLZMQTIKGSC-UHFFFAOYSA-N 1-[6-[4-(5-chloro-6-methyl-1H-indazol-4-yl)-5-methyl-3-(1-methylindazol-5-yl)pyrazol-1-yl]-2-azaspiro[3.3]heptan-2-yl]prop-2-en-1-one Chemical compound ClC=1C(=C2C=NNC2=CC=1C)C=1C(=NN(C=1C)C1CC2(CN(C2)C(C=C)=O)C1)C=1C=C2C=NN(C2=CC=1)C AZUYLZMQTIKGSC-UHFFFAOYSA-N 0.000 description 1
- XHWDVRRNQHMAPE-UHFFFAOYSA-N 2-[[2-[[2-[[2-[[2-[[5-amino-2-[[5-amino-2-[[1-[6-amino-2-[[1-[2-amino-5-(diaminomethylideneamino)pentanoyl]pyrrolidine-2-carbonyl]amino]hexanoyl]pyrrolidine-2-carbonyl]amino]-5-oxopentanoyl]amino]-5-oxopentanoyl]amino]-3-phenylpropanoyl]amino]-3-phenylpro Chemical compound C=1C=CC=CC=1CC(NC(=O)C(CCC(N)=O)NC(=O)C(CCC(N)=O)NC(=O)C1N(CCC1)C(=O)C(CCCCN)NC(=O)C1N(CCC1)C(=O)C(N)CCCN=C(N)N)C(=O)NC(C(=O)NCC(=O)NC(CC(C)C)C(=O)NC(CCSC)C(O)=O)CC1=CC=CC=C1 XHWDVRRNQHMAPE-UHFFFAOYSA-N 0.000 description 1
- ARSWQPLPYROOBG-ZETCQYMHSA-N 2-methylleucine Chemical group CC(C)C[C@](C)(N)C(O)=O ARSWQPLPYROOBG-ZETCQYMHSA-N 0.000 description 1
- SLXKOJJOQWFEFD-UHFFFAOYSA-N 6-aminohexanoic acid Chemical compound NCCCCCC(O)=O SLXKOJJOQWFEFD-UHFFFAOYSA-N 0.000 description 1
- 241001136792 Alle Species 0.000 description 1
- QNAYBMKLOCPYGJ-UHFFFAOYSA-N D-alpha-Ala Natural products CC([NH3+])C([O-])=O QNAYBMKLOCPYGJ-UHFFFAOYSA-N 0.000 description 1
- 239000004593 Epoxy Substances 0.000 description 1
- BZIBRGSBQKLEDC-UHFFFAOYSA-N Hexahydro-3-pyridazinecarboxylic acid Natural products OC(=O)C1CCCNN1 BZIBRGSBQKLEDC-UHFFFAOYSA-N 0.000 description 1
- ZGUNAGUHMKGQNY-ZETCQYMHSA-N L-alpha-phenylglycine zwitterion Chemical compound OC(=O)[C@@H](N)C1=CC=CC=C1 ZGUNAGUHMKGQNY-ZETCQYMHSA-N 0.000 description 1
- NHTGHBARYWONDQ-JTQLQIEISA-N L-α-methyl-Tyrosine Chemical group OC(=O)[C@](N)(C)CC1=CC=C(O)C=C1 NHTGHBARYWONDQ-JTQLQIEISA-N 0.000 description 1
- AHLPHDHHMVZTML-UHFFFAOYSA-N Orn-delta-NH2 Natural products NCCCC(N)C(O)=O AHLPHDHHMVZTML-UHFFFAOYSA-N 0.000 description 1
- UTJLXEIPEHZYQJ-UHFFFAOYSA-N Ornithine Natural products OC(=O)C(C)CCCN UTJLXEIPEHZYQJ-UHFFFAOYSA-N 0.000 description 1
- 229910019142 PO4 Inorganic materials 0.000 description 1
- 239000004372 Polyvinyl alcohol Substances 0.000 description 1
- 108010077895 Sarcosine Proteins 0.000 description 1
- 102400000096 Substance P Human genes 0.000 description 1
- 101800003906 Substance P Proteins 0.000 description 1
- 239000003929 acidic solution Substances 0.000 description 1
- 230000003213 activating effect Effects 0.000 description 1
- 125000001203 alloisoleucine group Chemical group 0.000 description 1
- 150000001408 amides Chemical group 0.000 description 1
- 229960002684 aminocaproic acid Drugs 0.000 description 1
- 230000003321 amplification Effects 0.000 description 1
- 238000003491 array Methods 0.000 description 1
- 229940000635 beta-alanine Drugs 0.000 description 1
- 150000001576 beta-amino acids Chemical class 0.000 description 1
- 230000001588 bifunctional effect Effects 0.000 description 1
- 230000029918 bioluminescence Effects 0.000 description 1
- 238000005415 bioluminescence Methods 0.000 description 1
- 229920001222 biopolymer Polymers 0.000 description 1
- 150000001732 carboxylic acid derivatives Chemical class 0.000 description 1
- 239000003795 chemical substances by application Substances 0.000 description 1
- 238000004040 coloring Methods 0.000 description 1
- 230000002860 competitive effect Effects 0.000 description 1
- 238000010668 complexation reaction Methods 0.000 description 1
- 238000004132 cross linking Methods 0.000 description 1
- 150000001945 cysteines Chemical class 0.000 description 1
- 230000001419 dependent effect Effects 0.000 description 1
- MHDVGSVTJDSBDK-UHFFFAOYSA-N dibenzyl ether Chemical compound C=1C=CC=CC=1COCC1=CC=CC=C1 MHDVGSVTJDSBDK-UHFFFAOYSA-N 0.000 description 1
- 238000003891 environmental analysis Methods 0.000 description 1
- 238000000605 extraction Methods 0.000 description 1
- 239000010408 film Substances 0.000 description 1
- 238000007306 functionalization reaction Methods 0.000 description 1
- 125000000291 glutamic acid group Chemical group N[C@@H](CCC(O)=O)C(=O)* 0.000 description 1
- 125000003630 glycyl group Chemical group [H]N([H])C([H])([H])C(*)=O 0.000 description 1
- YMAWOPBAYDPSLA-UHFFFAOYSA-N glycylglycine Chemical compound [NH3+]CC(=O)NCC([O-])=O YMAWOPBAYDPSLA-UHFFFAOYSA-N 0.000 description 1
- PCHJSUWPFVWCPO-UHFFFAOYSA-N gold Chemical compound [Au] PCHJSUWPFVWCPO-UHFFFAOYSA-N 0.000 description 1
- 229910052737 gold Inorganic materials 0.000 description 1
- 239000010931 gold Substances 0.000 description 1
- 229940088597 hormone Drugs 0.000 description 1
- 239000005556 hormone Substances 0.000 description 1
- 230000003100 immobilizing effect Effects 0.000 description 1
- 230000000984 immunochemical effect Effects 0.000 description 1
- 150000002500 ions Chemical class 0.000 description 1
- 125000001909 leucine group Chemical group [H]N(*)C(C(*)=O)C([H])([H])C(C([H])([H])[H])C([H])([H])[H] 0.000 description 1
- 239000003446 ligand Substances 0.000 description 1
- 229920002521 macromolecule Polymers 0.000 description 1
- 238000004519 manufacturing process Methods 0.000 description 1
- 239000000463 material Substances 0.000 description 1
- OFYAYGJCPXRNBL-LBPRGKRZSA-N naphthalen-2-yl-3-alanine Chemical compound C1=CC=C2C(C[C@H](N)C(O)=O)=CC=CC2=C1 OFYAYGJCPXRNBL-LBPRGKRZSA-N 0.000 description 1
- 238000003199 nucleic acid amplification method Methods 0.000 description 1
- 150000002894 organic compounds Chemical class 0.000 description 1
- 229960003104 ornithine Drugs 0.000 description 1
- 239000000575 pesticide Substances 0.000 description 1
- 239000012071 phase Substances 0.000 description 1
- NBIIXXVUZAFLBC-UHFFFAOYSA-K phosphate Chemical compound [O-]P([O-])([O-])=O NBIIXXVUZAFLBC-UHFFFAOYSA-K 0.000 description 1
- 239000010452 phosphate Substances 0.000 description 1
- 229920002451 polyvinyl alcohol Polymers 0.000 description 1
- 230000004224 protection Effects 0.000 description 1
- 125000004076 pyridyl group Chemical group 0.000 description 1
- 239000010453 quartz Substances 0.000 description 1
- 238000003380 quartz crystal microbalance Methods 0.000 description 1
- 229940043230 sarcosine Drugs 0.000 description 1
- 239000013545 self-assembled monolayer Substances 0.000 description 1
- 125000003607 serino group Chemical group [H]N([H])[C@]([H])(C(=O)[*])C(O[H])([H])[H] 0.000 description 1
- VYPSYNLAJGMNEJ-UHFFFAOYSA-N silicon dioxide Inorganic materials O=[Si]=O VYPSYNLAJGMNEJ-UHFFFAOYSA-N 0.000 description 1
- 238000010532 solid phase synthesis reaction Methods 0.000 description 1
- 238000001179 sorption measurement Methods 0.000 description 1
- 125000004213 tert-butoxy group Chemical group [H]C([H])([H])C(O*)(C([H])([H])[H])C([H])([H])[H] 0.000 description 1
- 238000012360 testing method Methods 0.000 description 1
- 239000010409 thin film Substances 0.000 description 1
- 150000003568 thioethers Chemical class 0.000 description 1
- 125000003396 thiol group Chemical group [H]S* 0.000 description 1
- 125000000341 threoninyl group Chemical group [H]OC([H])(C([H])([H])[H])C([H])(N([H])[H])C(*)=O 0.000 description 1
- 125000002088 tosyl group Chemical group [H]C1=C([H])C(=C([H])C([H])=C1C([H])([H])[H])S(*)(=O)=O 0.000 description 1
- 239000003053 toxin Substances 0.000 description 1
- 231100000765 toxin Toxicity 0.000 description 1
- 108700012359 toxins Proteins 0.000 description 1
- 238000012546 transfer Methods 0.000 description 1
- 238000011282 treatment Methods 0.000 description 1
- ZGYICYBLPGRURT-UHFFFAOYSA-N tri(propan-2-yl)silicon Chemical compound CC(C)[Si](C(C)C)C(C)C ZGYICYBLPGRURT-UHFFFAOYSA-N 0.000 description 1
- 125000002221 trityl group Chemical group [H]C1=C([H])C([H])=C([H])C([H])=C1C([*])(C1=C(C(=C(C(=C1[H])[H])[H])[H])[H])C1=C([H])C([H])=C([H])C([H])=C1[H] 0.000 description 1
- 125000000430 tryptophan group Chemical group [H]N([H])C(C(=O)O*)C([H])([H])C1=C([H])N([H])C2=C([H])C([H])=C([H])C([H])=C12 0.000 description 1
- 125000001493 tyrosinyl group Chemical group [H]OC1=C([H])C([H])=C(C([H])=C1[H])C([H])([H])C([H])(N([H])[H])C(*)=O 0.000 description 1
- JPZXHKDZASGCLU-LBPRGKRZSA-N β-(2-naphthyl)-alanine Chemical compound C1=CC=CC2=CC(C[C@H](N)C(O)=O)=CC=C21 JPZXHKDZASGCLU-LBPRGKRZSA-N 0.000 description 1
Description
PSEUDO-METALLOPROTEINS, THEIR PREPARATION AND USE
Field of the invention
The present invention relates to pseudo-metalloproteins, i.e., peptide-based compounds of synthesis, complexed with metal ions, capable of bringing about association, either covalent or non-covalent, with biomolecules such as antibodies, antigens, enzymes, receptors, nucleic acids, peptides and proteins. The invention also regards their preparation and al their use as biosensors, in combination with appropriate electrodes in voltmetric or amperometric measurements. Prior art
Pseudo-metalloproteins, which form the subject of the present invention, are synthetic models of complex natural systems [Cunningham, B. C, & Wells J. A. (1997) "Minimized Proteins" Curr. Opin. Struct. Biol. 7, 457; DeGrado, W. F.f Summa, C. M., Pavone, V., Nastri, F., & Lombardi, A. (1999) "De Novo Design and Structural Characterization of Proteins and Metalloproteins" Annu. Rev. Biochem. 68, 779]. They are of a peptide nature and have dimensions intermediate between models of low molecular weight, containing ligands generally of an organic nature, and the natural proteins and their mutants, previously used in many fields [DeGrado, W. F., Summa, C. M., Pavone, V., Nastri, F., & Lombardi, A. (1999) "De Novo Design and Structural Characterization of Proteins and Metalloproteins" Annu. Rev. Biochem. 68, 779; Nastri F., Lombardi A., D'Andrea L. D., Sanseverino M., Maglio O., and Pavone V. (1998) "Miniaturized hemoproteins", Biopolymers, 47, 5; Lombardi A., Summa C, Geremia S., Randaccio L., Pavone V. and DeGrado W. F (2000) "Retrostructural Analysis of Metalloproteins; Application to the Design of a Minimal Model for Diiron Proteins", Proc. Natl. Acad. Sci., 97, 6298]. The pseudo-metalloproteins that form the subject of the present invention present such a peculiarity of behaviour to make them extremely competitive as compared to other products appearing in the literature, for the reasons described in what follows [DeGrado, W. F., Summa, C. M., Pavone, V., Nastri, F., & Lombardi, A. (1999) Annu. Rev. Biochem. 68, 779; Nastri F., Lombardi A., D'Andrea L. D., Sanseverino M., Maglio O., and Pavone V. (1998) "Miniaturized hemoproteins", Biopolymers, 47, 5]. They
are in fact simpler systems than their natural counterparts (metalloproteins), but at the same time have a sufficient size and chemical diversity to enable the construction of appropriate functional sites. In particular, the molecules that form the subject of the present invention are particularly suited for making biosensors. As regards biosensors, those of affinity are analytical instruments that use elements of recognition (for example, antigens, receptor agonists or antagonists) interfaced to a signal transducer which measures the binding of these elements to their specific targets (the analyte). The elements of recognition may be interfaced to different types of transducers of the signal (as described herein), provided that the mechanism of transduction is effective and the corresponding signal can be easily detected. [Turner A.P.F. et a/., 1987, Biosensors: Fundamentals and applications, Oxford University Press, N.Y.; Marco M.P. et al., 1995, Immunochemical techniques for environmental analysis: Immunosensors, Trends Anal. Chem. 14, 341; Morgan C.L. et al., 1996, Immunosensors: technology and opportunities in laboratory medicine. Clin. Chem. 42, 193; Skladal P., 1997, Advances in electrochemical immunosensors. Electroanalysis, 9, 737; Rogers K.R. and Mulchandani A., 1998, Affinity Biosensors: Techniques and Protocols, 3, in Methods in Biotechnology, Humana Press, Totowa N.J.]. Up to the present day, different biosensors of affinity have been described (as emerges from the literature cited above), but all of these present considerable applicational limitations. The main elements of a biosensor are the element of recognition and the transducer. In these, the element of recognition is generally a biological macromolecule, such as an antibody or a receptor, which recognizes specific analytes, such as antigens, toxins, drugs, hormones, pesticides and so forth. On account of the stoichiometric relation between elements of recognition and analytes, and of the finite surface area of the transducer of the signal, both the immobilization and the orientation of the element of recognition are critical, in the construction of such biosensors, in order to enable an adequate accessibility of the recognition site for the analyte [Taylor R.F. (1996) Immobilization Methods, pp. 203-219, in Handbook of Chemical and Biological Sensors, IOP, Philadelphia P.A.]. For this purpose reported in the literature is a wide variety of methods, which include: covalent bonding, trapping, "cross-linking", adsorption. For
instance, proteins are utilized that are capable of binding in a specific way particular analytes, such as the protein A, the avidin-biotin system [Nakanishi K. et al., 1996, A novel method of immobilizing antibodies in a quartz crystal microbalance using plasma-polymerized films of immunosensors, Anal. Chem. 68, 1695], terminal thiol groups, and so forth. Elements of recognition have also been trapped in materials, such as polyacrylamide, polyvinyl alcohol, epoxy gel among others [Bhatia S.K. et al., 1989, Anal. Biochem. 178, 408]. Finally, also reported in the literature are bifunctional elements of recognition which present new arrangements of metallic complexes of proteins and peptides on surfaces of gold [Shanzer A. et al. 1999, Functional Monolayers with Coord i natively Embedded Metalloporphyrins, Angew. Chem., 38, 1257; Vogel H. et al., 1999, Functional Molecular Thin Films: Topological Template for the Chemioselective Ligation of Antigens Peptides to Self-Assembled Monolayers, Angew. Chem., 38, 696]. Two methods are known for detecting the phenomenon of recognition of the analyte by the biosensor of affinity: the direct method and the indirect method. These are strictly dependent upon the type of transducer used. The former method involves the detection of the analyte by means of the use of a marked analyte as tracer, whereas the latter method may involve both the use of a tracer, detectable by means of optical or electrochemical methods, and the combined use of an enzyme that converts catalytically a substrate into a product which is subsequently detected by the transducer.
Different types of transducers of the signal have been interfaced with the elements of recognition. These envisage mechanisms of transduction of an optical type (fluorescence, bioluminescence), electrochemical type (potenziometric, amperometric, conductimetric), or acoustic type (quartz microbalance). More recently micro-biosensors have also been developed, which make use of electrodes based upon silicon technology [Uhlig A., et al., 1997, Miniaturized ion- selective chip electrode for sensor application, Anal. Chem., 69, 4032; Hintsche R. et al., 1997, Microbiosensor using electrodes made in Si-technology, EXS, 80, 267; Scheller F.W., et al., 1991 , Second generation biosensors, 6, 245; Paeschke M., et al., 1996, Voltmetric Multichannel Measurement Using Silicon Fabricated Microelectrode Arrays, 8, 891]. The latter technology involves a cascading of
events which markedly limits its use, in so far as it requires the biosensor to be made purposely for the specific analyte, the particular event of recognition, the possible use of mediators, or for the enzymatic amplification.
From this reference panorama there emerges the need to develop new biosensors capable of overcoming the limitations encountered in the ones currently available and referred to in what follows: 1) low levels of sensitivity linked to the indirect methods of detection, which involve a large number of manipulations; 2) difficulty of automation in the indirect methods of detection; 3) availability of the tracer itself. In addition, the use of direct methods of detection is markedly limited by the need to orient the element of bioaffinity, which is frequently not effective in transferring the information of the recognition to the electrode.
The pseudo-metalloproteins of the present invention enable the problems indicated above to be solved with the major advantage of enabling direct electrochemical detection.
Summary of the invention
An object of the present invention is the creation of pseudo-metalloproteins according to formula (I) indicated herein.
Another object is the method of preparation of said pseudo-metalloproteins. Yet another object is the use of said pseudo-metalloproteins as biosensors.
A further object is the creation of biosensors with the pseudo-metalloproteins according to formula (I) indicated herein, which among other things, enable direct electrochemical detection.
Yet a further object is the use of said biosensors for the following applications: in vitro diagnostics, immunodiagnostics, determination of pollutant substances in water, determination of preservatives in foodstuffs, determination of drugs and/or toxic products in biological fluids, determination of the metabolic pathways of drugs, such as electrochemical probes of biomolecules.
Other objects will emerge clearly from the following detailed description of the invention.
Detailed description of the invention
A complete list of the abbreviations and symbols used in the text is provided at the
end of the present description.
In the present invention molecules are described that are represented by the following general formula (I):
X1 -S 1 -A1 -A2-C 1 -A3-A4-C2-A5-A6-A7-A8-A9-A10-Y1 -Y2 \ /
\ /
M (I)
/ \
/ \ X2-S2-B1 -B2-C3-B3-B4-C4-B5-B6-B7-B8-B9-B10-Y3-Y4 in which:
M is a metal selected in the group made up of Fe, Mn, Ti, Mo, Co, Ni, Cu, Pd, Pt, Au, Ru, Cr, V, Tb, Yb, Rh, Ir, Os, in any of the possible states of oxidation; X1 is an antigen, or any functional group that enables the association, either covalent or non-covalent, to a biomolecule, by "biomolecule" being meant a molecule of biological interest, such as antibodies, antigens, enzymes, receptors, nucleic acids, peptides and proteins;
X2 is any functional group that enables the association, either covalent or non- covalent, to an electrode; S1 and S2, which are the same as or different from one another, are spacer groups which, in the main chain, are made up of 3 to 12 atoms chosen in the group of the chemical species C, N, O, S and corresponding mixtures; C1 , C2, C3, C4, which are the same as or different from one another, are natural or synthetic amino acids capable of co-ordinating the metal ion M; A1 , A2, A9, B1 , B2, B9, which are the same as or different from one another, are any natural or synthetic hydrophilic amino acid;
A3, A4, A7, A8, A10, B3, B4, B7, B8, B10, which are the same as or different from one another, are any natural or synthetic amino acid; A5 and B5, which are the same as or different from one another, are Gly or else any amino acid of configuration D on the alpha carbon;
A6 and B6, which are the same as or different from one another, are any amino acid selected in the group made up of Ala, Abu, Val, lie, allo-lle;
Y1 is any natural or synthetic hydrophobic amino acid, and Y2 is Gly, or else Asp, or else Glu, Y3 is any natural or synthetic basic amino acid, and Y4 is NH2; or else Y1 is any natural or synthetic basic amino acid, and Y2 is NH2, Y3 is any natural or synthetic hydrophobic amino acid, and Y4 is Gly, or else Asp, or else Glu; or else Y1 and Y3, which are the same as or different from one another, are any natural or synthetic hydrophobic amino acid, and Y2 and Y4 are NH2. Amongst the compounds of formula (I) as indicated above particularly preferred are those in which: M is a metal selected in the group made up of Fe, Mn, Co, Ni, Cu in any of the possible states of oxidation;
X1 is an antigen, or else any functional group that enables the association, either covalent or non-covalent, to a biomolecule, such as amine, sulphidryl, hydroxyl, and biotin; X1 in particular may be a receptor agonist or antagonist, an amino acid functionalized with biotin, an enzymatic inhibitor, an oligonucleotide, or a peptide nucleic acid (PNA).
X2 is any functional group, such as sulphidryl and hydroxyl, that enables the association, either covalent or non-covalent, to an electrode; S1 and S2, which are the same as or different from one another, are (Gly)n with n = 1-4; C1 , C2, C3, C4, which are the same as or different from one another, are amino acids selected amongst natural or synthetic ones which contain on the side chain a functional group, such as amine, carboxyl, hydroxyl, thiol, thioether, imidazole, or pyridyl, which are capable of co-ordinating the metal ion M; A1 , A2, B1 , B2, which are the same as or different from one another, are any amino acid selected in the group made up of Gin, Asn, Thr, allo-Thr, Ser;
A3 and B3, which are the same as or different from one another, are any amino acid selected in the group made up of Ser, Thr, Val, Pro, lie, allo-Thr, Allo-lle; A4 and B4, which are the same as or different from one another, are an amino acid selected in the group made up of Ser, Thr, Val, Pro, lie, ailo-Thr, allo-lle, Lys; A5 and B5, which are the same as or different from one another, are Gly, or else any amino acid of configuration D on the alpha carbon;
A6 and B6, which are the same as or different from one another, are any amino acid selected in the group made up of Ala, Abu, Val, lie, allo-lle; A7, A10, B7, B10, which are the same as or different from one another, are any natural or synthetic amino acid; A8 and B8, which are the same as or different from one another, are any C- alpha.alpha-dialkylated amino acid;
A9 and B9, which are the same as or different from one another, are any natural or synthetic hydrophilic amino acid; Y1 is any natural or synthetic hydrophobic amino acid, and Y2 is Gly, or else Asp, or else Glu, Y3 is any natural or synthetic basic amino acid, and Y4 is NH2; or else Y1 is any natural or synthetic basic amino acid, and Y2 is NH2, Y3 is any natural or synthetic hydrophobic amino acid, and Y4 is Gly, or else Asp, or else Glu; or else Y1 and Y3, which are the same as or different from one another, are any natural or synthetic hydrophobic amino acid, and Y2 and Y4 are NH2. By "amino acid" is meant one of the organic compounds containing at least one amine group and one carboxyl group. According to the position of the amine group with respect to the carboxyl group, alpha-amino acids, beta-amino acids, gamma- amino acids, etc., are distinguished. The term "any amino acid" here used refers to the L and D isomers both of natural amino acids and of "non-proteic" amino acids (also referred to as "synthetic amino acids") which are commonly used in the chemistry of peptides for the preparation of synthetic analogues of natural peptides. Alpha-amino acids, whether substituted or non-substituted in the alpha and beta positions both of the L configuration and of the D configuration are indicated among the non-proteic amino acids.
The natural amino acids are glycine, alanine, valine, leucine, isoleucine, serine, methionine, threonine, phenylalanine, tyrosine, tryptophan, cysteine, proline, histidine, aspartic acid, asparagine, glutamic acid, glutamine, gamma- carboxyglutamic acid, arginine, omithine, and lysine. Examples of "non-proteic" amino acids are norleucine, norvaline, alloisoleucine, allothreonine homoarginine, thioproline, dehydroproline, hydroxyproline, pipecolic acid, azetidinic acid, homoserine, cyclohexylglycine, alpha-amino-n-butyrric acid,
cyclohexylalanine, aminophenylbutyrric acid, beta-(1- or 2-naphthyl) alanine, O- alkylated derivates of serine, threonine and tyrosine, S-alkylated cysteine, S- alkylated homocysteine, epsilon-alkylated lysine, delta-alkylated ornithine. Examples of C-alpha,alpha-dialkylated amino acids are: alpha, alpha- dimethylglycine, alpha-aminocyclopropane carboxylic acid, alpha- aminocyclobutane carboxylic acid, alpha-aminocyclopentane carboxylic acid, alpha-aminocyclohexane carboxylic acid, diethylglycine, dipropylglycine, diphenylglycine. Other non-proteic amino acids are those reported in: "Diversity of synthetic peptides", Konishi et al., First International Peptide Symposium, Kyoto, Japan, 1997.
Examples of hydrophilic amino acids are: Glu, Asp, Asn, Gin, Thr, allo-Thr, h-Ser, Ser, Lys, Arg, His, Orn, Dab, Dap.
Examples of hydrophobic amino acids are: Ala, Val, Leu, He, allo-lle, Met, Phe, Tyr, Trp, Cha, Chg, Abu, n-Val, t?-Leu, beta-1-Nal, beta-2-Nal. Examples of basic amino acids are: Lys, Arg, His, Orn, Dab, Dap.
Examples of amino acids capable of co-ordinating metal ions are: Cys, His, Met, Asp, Glu, Lys, Ser, Thr, h-Cys, h-Ser, Dap, Dab, Orn, Gaba. The compounds of the general formula (I) may also be used in combination with appropriate counter-ions, provided that they are compatible with the specific applications.
The completely unexpected and unique properties, described in what follows, of the pseudo-metalloproteins of the present invention derive from the structural solutions chosen, such as their low molecular weight, and well-defined secondary and tertiary structures. The compounds of the invention are easy to synthesize and purify and, since they are of low molecular weight, may be obtained on a large scale at lower costs than metalloproteins obtained as products of expression or extraction. The synthetic procedure proposed is based mainly on consolidated methods of solid-phase peptide synthesis, preferably synthesis with protector groups characteristic of Fmoc chemistry [Atherton, E. & Sheppard, R. C, 1989, Solid Phase Peptide Synthesis, IRL Press].
The compounds of formula (I), which form the subject of the present invention, may be synthesized using the various techniques that are known in the literature to the man skilled in the art. These techniques include solid-phase peptide synthesis, peptide synthesis in solution, synthetic methods of organic chemistry, or else any combination of the above. The pre-selected scheme of synthesis will of course depend upon the composition of the particular molecule. Preferably, synthetic methods based upon appropriate combinations of solid-phase techniques are used [Atherton, E. & Sheppard, R. C, 1989, Solid Phase Peptide Synthesis, IRL Press; Gross, E. & Meinhofer, J., 1980, The Peptides: Analysis, Synthesis and Biology, Vol. 2; Merrifield, B., 1986, Science 232, 341] and the classic in-solution methods [Gross, E. & Meinhofer, J., 1980, The Peptides: Analysis, Synthesis and Biology, Vol. 1], which involve low production costs, in particular on an industrial scale. In detail, these methods may be the ones described in what follows. Synthesis in solution [Gross, E. & Meinhofer, J., 1979, The Peptides: Analysis, Synthesis and Biology, Vol. 1] of fragments of the peptide chain through the subsequent coupling of N-protected amino acids, appropriately activated, to an amino acid or to a C-protected peptide chain [Gross, E. & Meinhofer, J., 1981 , The Peptides: Analysis, Synthesis and Biology, Vol. 3; Gross, E. & Meinhofer, J., 1983, The Peptides: Analysis, Synthesis and Biology, Vol. 5], with isolation of the intermediates, subsequent selective de-protection of the N- and C-terminal ends of said fragments, and coupling thereof until the desired peptide is obtained. Solid-phase synthesis of the peptide chain from the C-terminal end towards the N- terminal end on an insoluble polymeric substrate. For completion of the desired peptide chain, there follows the removal of the peptide from the solid substrate, with simultaneous de-protection of the side chains, by acidic hydrolysis, in the presence of appropriate "scavengers" [Atherton, E. & Sheppard, R. C, 1989, Solid Phase Peptide Synthesis, IRL Press; Gross, E. & Meinhofer, J., 1980, The Peptides: Analysis, Synthesis and Biology, Vol. 2; Merrifield, B., 1986, Science 232, 341].
The pseudo-metalloproteins of the present invention may be advantageously used for making biosensors of affinity with great advantages in their use.
In fact, the use of the compounds of formula (I), as essential elements of an electrochemical device, makes it possible to avoid recourse to marked analytes or to complicated intermediate manipulations. The recognition of the analyte by the element of recognition may be directly detected by means of a variation in the redox potential of the pseudo-metalloprotein, to which the element of recognition binds in a covalent or non-covalent way.
According to the present invention, a biosensor is constructed by binding the pseudo-metalloproteins which form the object of the present invention to an electrode, through the group X2. The group X1 is capable of recognizing an analyte, and this recognition causes a variation in the redox potential of M. This variation may be measured using electrochemical methods, such as potentiometric or voltmetric methods.
The technology based upon the pseudo-metalloproteins of the invention does not involve a cascading of events in the transduction of the signal, which may, instead, be transferred directly, and possibly amplified, to the detection system. This aspect is particularly important because it enables ease of automation and hence high levels of reproducibility, sensitivity and speed of analysis. In addition, the solution proposed for the functionalization of the electrode makes it possible to overcome the problems connected with the orientation of the element of recognition with respect to the electrode and ensures an efficient and fast transfer of the information to the electrode.
When the analyte binds to the element of recognition, there is a variation in the redox potential of the pseudo-metalloprotein. This variation of the redox potential represents a new type of mechanism of transduction of the signal, which enables a direct detection, by means of electrochemical methods, also of active non-redox analytes. The variations in the redox potential may be easily detected and amplified, also by coupling multiple scans of the potential. An electrode made with the compounds of the invention may be advantageously used for the following purposes: in vitro diagnostics, immunodiagnostics, determination of pollutant substances in water, determination of preservatives in foodstuffs, determination of drugs and/or toxic products in biological fluids, and determination of the metabolic pathways of drugs. In addition, the biosensors
comprising the pseudo-metalloproteins of the invention may be used as electrochemical probes of biomolecules.
The following examples are given to provide a better illustration of the invention and are not to be considered in any way limiting of the scope thereof. Example 1
Preparation of the compound of the general formula (I) in which: M is the Fe3+ion, X1 is the substance P (H-Arg-Pro-Lys-Pro-Gln-Gln-Phe-Phe-Gly- Leu-Met-OH), X2 is Cys, S1 and S2 are Gly-Gly, C1 , C2, C3 and C4 are Cys, A1 and B1 are Gin, A2 and B2 are Gin, A3 and B3 are Thr, A4 and B4 are lie, A5 and B5 are Gly, A6 and B6 are Ala, A7 and B7 are Pro, A8 and B8 are Aib, A9 and B9 are Ser, A10 and B10 are lie, Y1 and Y3 are lie, Y2 and Y4 are NH2. The various phases of the synthesis of the compound Fe3+-(Arg-Pro-Lys-Pro-Gln- Gln-Phe-Phe-Gly-Leu-Met-Gly-Gly-Gln-Gln-Cys-Thr-lle-Cys-Gly-Ala-Pro-Aib-Ser- lle-lle-NH2)(Cys-Gly-Gly-Gln-Gln-Cys-Thr-lle-Cys-Gly-Ala-Pro-Aib-Ser-lle-lle-NH2) are given in what follows. Example 1a
Synthesis of the compound A: (Seq. 1): Arg-Pro-Lys-Pro-Gln-Gln-Phe-Phe-Gly- Leu-Met-Gly-Gly-Gln-Gln-Cys-Thr-lle-Cys-Gly-Ala-Pro-Aib-Ser-lle-lle-NH2. The synthesis of the compound A was performed using the strategy of solid-phase peptide synthesis, and using an automatic peptide synthesizer, which operates in continuous flow. In particular, the methodology was used that employs, as protector group of the alpha-amine function, the Fmoc group [Atherton, E. & Sheppard, R. C, 1989, Solid Phase Peptide Synthesis, IRL Press]. The following protections were used on the side chains: Arg(Pmc), Lys(Boc), Gln(Trt), Glu(OtBu), Ser(tBu), Asn(Trt), Cys(Trt), Thr(tBu). The synthesis was conducted using as solid substrate the resin Novasyn PR 500, which enables the peptide to be obtained as C-terminal amide. A scale of synthesis of 0.2 mmol was adopted, using a substitution of the resin of 0.36 mmol/g. For removal of the Fmoc group from the alpha-amine function of each residue, after the coupling, a 20% solution in volume of piperidine in DMF was used. Two successive treatments, one of 3 minutes and the other of 7 minutes, were used for each cycle. The amino acids were inserted in subsequent stages, and the conditions and methodologies used
for each individual residue were the following: all the Fmoc-amino acids, with the exception of Fmoc-lle, Fmoc-Aib and Fmoc-Thr(tBu), were inserted with the procedure of the PyBop: 4 equivalents of the Fmoc-protected amino acid, 4 equivalents of PyBop and 8 equivalents of DIEA in DMF with an acylation time of two hours [Coste, J., Le-Nguyen, D., & Castro, B. (1990) Tetrahedron Lett. 31 , 205]. Each stage of the coupling was repeated twice. Fmoc-lle, Fmoc-Aib and Fmoc-Thr(tBu) were introduced using as activating agent HATU [Abdelmoty, I., Albericio, F., Carpino, L. A., Foxman, B. M., Kates, S.A., 1994, Lett. Pep. Sci. 1 , 57]: 4 equivalents of the Fmoc-protected amino acid, 4 equivalents of HATU and 8 equivalents of DIEA in DMF with an acylation time of two hours. Each stage of the coupling was repeated twice. Controls using the Kaiser test were carried out to evaluate the completeness of each coupling reaction. The detachment of the peptide from the resin and the simultaneous removal of the protector groups of the side chains were carried out using a mixture of ethanedithiol/triisopropylsilane/H2O/TFA in the ratio of 0.25/0.1/0.25/9.4 (in volume) at 0°C for 3 h. The resin was filtered, and the crude peptide was precipitated from the acidic solution with ethyl ether. The crude product was obtained in the form of a powder, with a yield of 80 %, based on the level of substitution of the resin. The crude product was reduced with dithiotreitol, using an excess of 5 times with respect to each SH group present in the amino acid sequence. The reaction was conducted in an aqueous solution at pH 8, for 3 h at 40°C. The homogeneity of the product was obtained from the analysis by analytical HPLC, which showed the presence of a single main peak at a tr = 20.5 min. The crude material was purified by means of preparative RP-HPLC to obtain 0.200 g of pure product. Analysis by means of analytical HPLC confirmed the purity of the product. The identity of the product was confirmed by means of MALDI-TOF mass spectrometry, which confirmed the expected molecular weight of 2762 uma. Example 1b Synthesis of compound B:
Synthesis of compound B. (Seq. 2): Cys-Gly-Gly-Gln-Gln-Cys-Thr-lle-Cys-Gly-Ala- Pro-Aib-Ser-lle-lle-NH2.
Synthesis of compound B was conducted using the strategy described for compound A. The crude product was obtained in the form of a powder, with a yield of 85 %, based on the level of substitution of the resin. The crude product was reduced with dithiotreitol, using an excess of 5 times with respect to each SH group present in the amino acid sequence. The reaction was conducted in an aqueous solution at pH 8, for 3 h at 40°C. The homogeneity of the product was obtained from analysis by means of analytical HPLC, which revealed the presence of a single main peak at tr = 15.5 min. The crude material was purified by means of preparative RP-HPLC to obtain 0.160 g of pure product. Analysis by means of analytical HPLC confirmed the purity of the product. The identity of the product was confirmed by MALDI-TOF mass spectrometry, which confirmed the expected molecular weight of 1535 uma. Example 2 Synthesis of the compound Fe3+-(Arg-Pro-Lys-Pro-Gln-Gln-Phe-Phe-Gly-Leu-Met- Gly-Gly-Gln-Gln-Cys-Thr-lle-Cys-Gly-Ala-Pro-Aib-Ser-lle-lle-NH2)(Cys-Gly-Gly- Gln-Gln-Cys-Thr-lle-Cys-Gly-Ala-Pro-Aib-Ser-lle-lle-NH2). For the preparation of this compound, all the operations were performed in strictly anaerobic conditions, and the following procedure was adopted: Complexation reaction An aqueous solution of 2x10"3 M of Compound A was prepared. An aqueous solution of 2x10"3 M of Compound B was prepared. Equal volumes of the two solutions A and B were mixed together, and to the resulting solution was added Fe(S04)2(NH4)2 in a stoichiometric quantity. The final solution was brought to pH 7.5 by addition of NaOH. The formation of the complex was confirmed by means of uv-vis spectroscopy, for the presence of absorption bands with maxima at 310 and 332 nm [lm, S.-C, & Sykes, A. G., 1996, J. Chem. Soc. Dalton Trans. 2219].
The iron was oxidized to the state of oxidation +3 by means of exposure to air of the solution prepared in stage 3. The solution assumed a red colouring. The formation of the complex was confirmed by uv-vis spectroscopy, for the presence of absorption bands with maxima at 358, 486, 565 nm.
List of abbreviations
For the nomenclature and the abbreviations of the amino acids, reference is made to the recommendations of the IUPAC-IUB Joint Commission on Biochemical Nomenclature (Eur. J. Biochem. 1984, 138, pp 9); the amino acids are understood as in the L configuration if not otherwise specified. The other abbreviations used are:
Orn = ornithine, Gly = glycine, Ala= alanine, Val = valine, Leu = leucine, delta-Leu = dehydroleucine, alpha-Me-Leu = alpha-methylleucine, lie = isoieucine, Pro =proline, Phe = phenylalanine, Trp = tryptophan, Met = methionine, Ser = serine, Thr = threonine, Tyr = tyrosine, delta-Tyr = alpha-beta-dehydrotyrosine, alpha-Me- Tyr = alpha-methyltyrosine, Asn = asparagine, Gin = glutamine, Asp = aspartic acid, Lys = lysine, His = histidine, Glu = glutamic acid, Arg = arginine, Nle= norleucine, Hyp = hydroxyproline, delta-Pro = dehydroproline, delta-Glu = alpha- beta-dehydroglutamic acid, alpha-Me-Glu = alpha-methyl-glutamic acid, Pgl = phenylglycine, 1-Nal = beta-1-naphthylalanine, 2-Nal = beta-2-naphthylalanine, Cha = cyclohexylalanine. alle = allo-isoleucine, Chg = cyclohexylglycine, Sar = sarcosine, Pip = pipecolic acid, Azt = azetidinic acid, Gla = gamma- carboxyglutamic acid, Pap = para-amidino-phenylalanine, Deg = diethylglycine, Dpg = dipropylglycine, aThr = allo-threonine, Aba = alpha-amino-π-butyrric acid, Pba = aminophenylbutyrric acid, S-Pro = thioproline, Aib= alpha-aminoisobutyrric acid (alpha-methyl-alanine), Dap = 2,3 diaminoproprionic acid, Dab = 2,4 diaminobutyrric acid, Gaba = gamma-aminobutyrric acid, epsilon-Aca = epsilon- aminocaproic acid, delta-Ava = delta-aminovaleric acid, beta-Ala = beta-alanine, AC3C = alpha-aminocyclopropane carboxylic acid, AC4C = alpha-amino- cyclobutane carboxylic acid, AC5C = alpha-aminocycfopentane carboxylic acid, Ac6C = alpha-aminocyclohexane carboxylic acid, alpha-Ac5C = alpha- aminocyclopentane carboxylic acid, alpha-Acec = alpha-aminocyclohexane carboxylic acid, Dph = diphenylglycine, Boc = tett-butyloxycarbonyl, Fmoc = fluorenylmethoxycarbonyl, Bzl = benzylester, PAM = phenylacetoxymethyl, TFA = trifluoro acetic acid, DCM = dichloromethane, DIEA = diisopropylethylamine, DMF = dimethylformamide, OBzl = benzylether, PyBop = benzotriazole-1-yl-oxy-tris- pyrrolidine-phosphonium-hexafluorophosphate, DCC = dicyclohexylcarbodiimide,
DCU = dicyclohexylurea, Bom = benzyloxymethyl, Tos = tosyl, HATU = 0-(7- azabenzotriazole)-1,1 ,3,3-tetramethyluroniohexafluoro phosphate; OtBu = tert- butyl ester; tBU = terf-butyl ether; Pmc = pentamethylchromanesulphonyl; Trt: triphenyl-methyl.
Claims
1. A compound of the general formula (I):
X1 -S 1 -A1 -A2-C1 -A3-A4-C2-A5-A6-A7-A8-A9-A10-Y1 -Y2 \ /
\ /
M (I)
/ \
/ \ X2-S2-B1 -B2-C3-B3-B4-C4-B5-B6-B7-B8-B9-B10-Y3-Y4 in which:
M is a metal selected in the group made up of Fe, Mn, Ti, Mo, Co, Ni, Cu, Pd,
Pt, Au, Ru, Cr, V, Tb, Yb, Rh, Ir, Os;
X1 is an antigen, or else a functional group that enables the association, either covalent or non-covalent, to a biomolecule;
X2 is a functional group that enables the association, either covalent or non- covalent, to an electrode;
S1 and S2, which are the same as or different from one another, are spacer groups which, in the main chain, are made up of 3 to 12 atoms selected in the group of the chemical species C, N, O, S and corresponding mixtures;
C1 , C2, C3, C4, which are the same as or different from one another, are natural or synthetic amino acids capable of co-ordinating the metal ion M;
A1 , A2, A9, B1 , B2, B9, which are the same as or different from one another, are a natural or synthetic hydrophilic amino acid; A3, A4, A7, A8, A10, B3, B4, B7, B8, B10, which are the same as or different from one another, are a natural or synthetic amino acid;
A5 and B5, which are the same as or different from one another, are Gly or else an amino acid of configuration D on the alpha carbon;
A6 and B6, which are the same as or different from one another, are an amino acid chosen in the group made up of Ala, Abu, Val, lie, allo-lle;
Y1 is a natural or synthetic hydrophobic amino acid, and Y2 is Gly, or else Asp, or else Glu, Y3 is a natural or synthetic basic amino acid, and Y4 is NH2; or
else Y1 is a natural or synthetic basic amino acid, and Y2 is NH2, Y3 is a natural or synthetic hydrophobic amino acid, and Y4 is Gly, or else Asp, or else
Glu; or else Y1 and Y3, which are the same as or different from one another, are a natural or synthetic hydrophobic amino acid, and Y2 and Y4 are NH2. The compound according to Claim 1 , in which:
M is a metal selected in the group made up of Fe, Mn, Co, Ni, Cu;
X1 is an antigen, or else a functional group that enables the association, either covalent or non-covalent, to a biomolecule;
X2 is a functional group that enables the association, either covalent or non- covalent, to an electrode;
S1 and S2, which are the same as or different from one another, are (Gly)n with n = 1-4;
C1 , C2, C3, C4, which are the same as or different from one another, are amino acids selected amongst natural or synthetic ones containing on the side chain a functional group capable of co-ordinating the metal ion M;
A1 , A2, B1 , B2, which are the same as or different from one another, are an amino acid selected in the group made up of Gin, Asn, Thr, allo-Thr, Ser;
A3 and B3, which are the same as or different from one another, are an amino acid selected in the group made up of Ser, Thr, Val, Pro, He, allo-Thr, Allo-lle; A4 and B4, which are the same as or different from one another, are an amino acid selected in the group made up of Ser, Thr, Val, Pro, He, allo-Thr, Allo-lle,
Lys;
A5 and B5, which are the same as or different from one another, are Gly, or else an amino acid of configuration D on the alpha carbon; A6 and B6, which are the same as or different from one another, are an amino acid in the group made up of Ala, Abu, Val, lie, allo-lle;
A7, A10, B7, B10, which are the same as or different from one another, are a natural or synthetic amino acid;
A8 and B8, which are the same as or different from one another, are a C- alpha, alpha-dialkylated amino acid;
A9 and B9, which are the same as or different from one another, are a natural or synthetic hydrophilic amino acid;
Y1 is a natural or synthetic hydrophobic amino acid, and Y2 is Gly, or else Asp, or else Glu, Y3 is a natural or synthetic basic amino acid, and Y4 is NH2; or else Y1 is a natural or synthetic basic amino acid, and Y2 is NH2, Y3 is a natural or synthetic hydrophobic amino acid, and Y4 is Gly, or else Asp, or else Glu; or else Y1 and Y3, which are the same as or different from one another, are a natural or synthetic hydrophobic amino acid, and Y2 and Y4 are NH2.
3. The compound according to Claim 1 or 2, in which X1 is a functional group selected among amine, sulphidryl, hydroxyl, biotin.
4. The compound according to Claim 1 or 2, in which X1 is a receptor antagonist. 5. The compound according to Claim 1 or 2, in which X1 is a receptor agonist.
6. The compound according to Claim 1 or 2, in which X1 is an amino acid functionalized with biotin.
7. The compound according to Claim 1 or 2, in which X1 is an enzymatic inhibitor.
8. The compound according to Claim 1 or 2, in which X1 is a oligonucleotide. 9. The compound according to Claim 1 or 2, in which X1 is a PNA.
10. The compound according to Claim 1 or 2, in which X2 is a functional group containing at least one thiol.
11. The compound according to Claim 1 or 2, in which X2 is a functional group selected between sulphidryl and hydroxyl. 12. The compound according to Claim 1 or 2, in which the biomolecule is a molecule selected in the group consisting of antibodies, antigens, enzymes, receptors, nucleic acids, peptides, and proteins.
13. The compound according to Claim 1 or 2, in which the natural amino acid is chosen in the group consisting of: glycine, alanine, valine, leucine, isoleucine, serine, methionine, threonine, phenylalanine, tyrosine, tryptophan, cysteine, proline, histidine, aspartic acid, asparagine, glutamic acid, glutamine, gamma- carboxyglutamic acid, arginine, omithine, and lysine.
14. The compound according to Claim 1 or 2, in which the synthetic amino acid is selected in the group consisting of: norleucine, norvaline, alloisoleucine, allothreonine, homoarginine, thioproline, dehydroproline, hydroxyproline, pipecolic acid, azetidinic acid, homoserine, cyclohexylglycine, alpha-amino-π- butyrric acid, cyclohexylalanine, aminophenylbutyrric acid, beta-(1- or 2-
naphthyl)alanine, O-alkylated derivatives of serine, threonine and tyrosine, S- alkylated cysteine, S-alkylated homocysteine, epsilon-alkylated lysine, and delta-alkylated ornithine.
15. The compound according to Claim 1 or 2, in which the hydrophilic amino acid is selected in the group consisting of: Glu, Asp, Asn, Gin, Thr, allo-Thr, h-Ser,
Ser, Lys, Arg, His, Orn, Dab, Dap.
16. The compound according to Claim 1 or 2, in which the hydrophobic amino acid is selected in the group consisting of: Ala, Val, Leu, lie, allo-lle, Met, Phe, Tyr, Trp, Cha, Chg, Abu, n-Val, π-Leu, beta-1-Nal, beta-2-Nal. 17. The compound according to Claim 1 or 2, in which the basic amino acid is selected in the group consisting of: Lys, Arg, His, Orn, Dab, Dap. 18. The compound according to Claim 1 or 2, in which the amino acid capable of co-ordinating metal ions is selected in the group consisting of: Cys, His, Met, Asp, Glu, Lys, Ser, Thr, h-Cys, h-Ser, Dap, Dab, Orn, Gaba. 19. The compound according to Claim 2, in which the C-alpha,alpha-dialkylated amino acid is selected in the group consisting of: alpha.alpha-dimethylglycine, alpha-aminocyclopropane carboxylic acid, alpha-aminocyclobutane carboxylic acid, alpha-aminocyclopentane carboxylic acid, alpha-aminocyclohexane carboxylic acid, diethylglycine, dipropylglycine, diphenylglycine. 20. The compound according to Claims 1-19, in ionic form.
21. The compound according to Claims 1-20, bound, through the thiolic functions, to an electrode.
22. Method for the preparation of the compounds according to Claims 1 -21 , which comprises causing to react in solution fragments of a peptide chain by means of subsequent coupling of N-protected amino acids activated with an amino acid or a C-protected peptide chain, subsequent isolation of the corresponding intermediates, subsequent selective de-protonation of the N- and C-terminal ends of said intermediates and coupling thereof until the desired peptide is obtained. 23. A method for the preparation of the compounds according to Claims 1-21 , comprising the reaction of the peptide chain from the C-terminal end towards the N-terminal end on an insoluble polymeric substrate, for completing which
there follows the removal of the peptide from the substrate, with simultaneous de-protonation of the side chains, by means of acidic hydrolysis in the presence of a scavenger.
24. An electrochemical biosensor of affinity of a direct type which uses as signal transducers the compounds according to Claims 1-21.
25. The biosensor according to Claim 24, obtained by chemical bonding between an electrode and one the compounds of formula (I) through the group X2.
26. A method for the electrochemical determination of an analyte, characterized in that, in the biosensor according to Claim 24, the group X1 recognizes the analyte by a variation in the redox potential of the compound of formula (I).
27. The method according to Claim 26, in which the determination is of a potenziometric type.
28. The method according to Claim 26. in which the determination is of a voltmetric type. 29. Use of the biosensor according to Claim 24 for carrying out: in vitro diagnostics, immunodiagnostics, determination of pollutant substances in water, determination of preservatives in foodstuffs, determination of drugs and/or toxic products in biological fluids, and determination of the metabolic pathways of drugs. 30. Use of the biosensor according to Claim 24 as electrochemical probe of biomolecules.
Applications Claiming Priority (3)
| Application Number | Priority Date | Filing Date | Title |
|---|---|---|---|
| IT2000RM000454A IT1317895B1 (en) | 2000-08-10 | 2000-08-10 | PSEUDO-METALLOPROTEIN, THEIR PREPARATION AND THEIR USE. |
| ITRM200A000454 | 2000-08-10 | ||
| PCT/IB2001/001427 WO2002012278A2 (en) | 2000-08-10 | 2001-08-09 | Pseudo-metalloproteins, corresponding preparation and use as biosensors |
Publications (2)
| Publication Number | Publication Date |
|---|---|
| AU2001276606A1 true AU2001276606A1 (en) | 2002-05-16 |
| AU2001276606B2 AU2001276606B2 (en) | 2007-01-18 |
Family
ID=11454884
Family Applications (2)
| Application Number | Title | Priority Date | Filing Date |
|---|---|---|---|
| AU7660601A Pending AU7660601A (en) | 2000-08-10 | 2001-08-09 | Pseudo-metalloproteins, their preparation and use |
| AU2001276606A Ceased AU2001276606B2 (en) | 2000-08-10 | 2001-08-09 | Pseudo-metalloproteins, corresponding preparation and use as biosensors |
Family Applications Before (1)
| Application Number | Title | Priority Date | Filing Date |
|---|---|---|---|
| AU7660601A Pending AU7660601A (en) | 2000-08-10 | 2001-08-09 | Pseudo-metalloproteins, their preparation and use |
Country Status (7)
| Country | Link |
|---|---|
| US (1) | US20050090649A1 (en) |
| EP (1) | EP1309612A2 (en) |
| AU (2) | AU7660601A (en) |
| CA (1) | CA2419019A1 (en) |
| IT (1) | IT1317895B1 (en) |
| NZ (1) | NZ524643A (en) |
| WO (1) | WO2002012278A2 (en) |
Families Citing this family (1)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| CN110220960B (en) | 2019-07-05 | 2024-02-06 | 长沙理工大学 | L-arginine detection method and sensor |
Family Cites Families (5)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| GB2191200B (en) * | 1986-06-02 | 1990-07-11 | Debiopharm Sa | Process for preparing conjugates of metalloproteins and novel derivatives thereof |
| US5945508A (en) * | 1996-07-23 | 1999-08-31 | Witten; Mark L. | Substance P treatment for immunostimulation |
| AU7715898A (en) * | 1997-05-27 | 1998-12-30 | Duke University | Synthetic metalloproteins and method of preparation thereof |
| EP0949269A1 (en) * | 1998-04-02 | 1999-10-13 | SymBiosis GmbH | Biosensor protein |
| US6787368B1 (en) * | 1999-03-02 | 2004-09-07 | Helix Biopharma Corporation | Biosensor method for detecting analytes in a liquid |
-
2000
- 2000-08-10 IT IT2000RM000454A patent/IT1317895B1/en active
-
2001
- 2001-08-09 EP EP01954265A patent/EP1309612A2/en not_active Withdrawn
- 2001-08-09 AU AU7660601A patent/AU7660601A/en active Pending
- 2001-08-09 WO PCT/IB2001/001427 patent/WO2002012278A2/en not_active Ceased
- 2001-08-09 NZ NZ524643A patent/NZ524643A/en unknown
- 2001-08-09 AU AU2001276606A patent/AU2001276606B2/en not_active Ceased
- 2001-08-09 CA CA002419019A patent/CA2419019A1/en not_active Abandoned
- 2001-08-09 US US10/344,329 patent/US20050090649A1/en not_active Abandoned
Similar Documents
| Publication | Publication Date | Title |
|---|---|---|
| Hermodson et al. | Amino acid sequence of monkey amyloid protein A | |
| Gitlin et al. | Studies on the biotin-binding site of avidin. Tryptophan residues involved in the active site | |
| LABBÉ‐JULLIÉ et al. | Binding and toxicity of apamin: characterization of the active site | |
| Heinemann et al. | The covalent structure of rabbit phenobarbital-induced cytochrome P-450. Partial amino acid sequence and order of cyanogen bromide peptides. | |
| CN110426435B (en) | A kind of arginine biosensor based on peptide aptamer and preparation method thereof | |
| CA2105181C (en) | Compounds and methods for sequencing amino acids | |
| Riester et al. | Racemization of amino acids in solid-phase peptide synthesis investigated by capillary electrophoresis | |
| US7186799B2 (en) | Peptide and amine examination method using the same | |
| Spiess et al. | Sequence analysis of rat hypothalamic corticotropin-releasing factor with the o-phthalaldehyde strategy | |
| CN110220960A (en) | A kind of detection method and sensor of L-arginine | |
| Reynolds Jr et al. | The voltammetry of neuropeptides containing l‐tyrosine | |
| TAKAGI et al. | Amino acid sequence of troponin C obtained from ascidian (Halocynthia roretzi) body wall muscle | |
| CN107703109B (en) | Two-dimensional molybdenum sulfide polypeptide composite material and application thereof in targeting CD47 cancer marker | |
| CN103270040B (en) | Catalyst and preparation thereof and purposes | |
| AU2001276606B2 (en) | Pseudo-metalloproteins, corresponding preparation and use as biosensors | |
| CN114133425B (en) | Method for modifying protein cysteine site by propargyl sulfonium salt and application thereof | |
| AU2001276606A1 (en) | Pseudo-metalloproteins, corresponding preparation and use as biosensors | |
| US5814470A (en) | Melittin-related polypeptides, mixture sets and libraries thereof | |
| US5582997A (en) | Lysine/leucine polypeptides, mixture sets and libraries thereof | |
| WO2005045430A1 (en) | Screening combinatorial bead libraries for cancer ligands | |
| CN210376224U (en) | Sensor for detecting L-arginine | |
| CN106046115B (en) | A kind of novel polypeptide ligand for modifying quantum dot | |
| US20080009070A1 (en) | Amine detecting method | |
| KR102565102B1 (en) | Composition for creatinine detection using interaction between gold nanoparticle and creatinine and method for creatinine detection using the same | |
| Hagenmaier et al. | A Model System for Studying Peptide Synthesis on Polymeric Supports by Ion Exchange Chromatography |