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NZ733789B2 - Binding-triggered transcriptional switches and methods of use thereof - Google Patents

Binding-triggered transcriptional switches and methods of use thereof

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Publication number
NZ733789B2
NZ733789B2 NZ733789A NZ73378916A NZ733789B2 NZ 733789 B2 NZ733789 B2 NZ 733789B2 NZ 733789 A NZ733789 A NZ 733789A NZ 73378916 A NZ73378916 A NZ 73378916A NZ 733789 B2 NZ733789 B2 NZ 733789B2
Authority
NZ
New Zealand
Prior art keywords
nucleic acid
cell
isolated nucleic
notch
chimeric
Prior art date
Application number
NZ733789A
Other versions
NZ733789A (en
Inventor
Wendell A Lim
Leonardo Morsut
Kole T Roybal
Original Assignee
The Regents Of The University Of California
Filing date
Publication date
Application filed by The Regents Of The University Of California filed Critical The Regents Of The University Of California
Priority to NZ773109A priority Critical patent/NZ773109B2/en
Priority claimed from PCT/US2016/019188 external-priority patent/WO2016138034A1/en
Publication of NZ733789A publication Critical patent/NZ733789A/en
Publication of NZ733789B2 publication Critical patent/NZ733789B2/en

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    • AHUMAN NECESSITIES
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    • A61K2039/515Animal cells
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    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
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    • A61K39/00Medicinal preparations containing antigens or antibodies
    • A61K2039/51Medicinal preparations containing antigens or antibodies comprising whole cells, viruses or DNA/RNA
    • A61K2039/515Animal cells
    • A61K2039/5158Antigen-pulsed cells, e.g. T-cells
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K2239/00Indexing codes associated with cellular immunotherapy of group A61K40/00
    • A61K2239/27Indexing codes associated with cellular immunotherapy of group A61K40/00 characterized by targeting or presenting multiple antigens
    • A61K2239/29Multispecific CARs
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K2239/00Indexing codes associated with cellular immunotherapy of group A61K40/00
    • A61K2239/31Indexing codes associated with cellular immunotherapy of group A61K40/00 characterized by the route of administration
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K2239/00Indexing codes associated with cellular immunotherapy of group A61K40/00
    • A61K2239/38Indexing codes associated with cellular immunotherapy of group A61K40/00 characterised by the dose, timing or administration schedule
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K35/00Medicinal preparations containing materials or reaction products thereof with undetermined constitution
    • A61K35/12Materials from mammals; Compositions comprising non-specified tissues or cells; Compositions comprising non-embryonic stem cells; Genetically modified cells
    • A61K35/14Blood; Artificial blood
    • A61K35/17Lymphocytes; B-cells; T-cells; Natural killer cells; Interferon-activated or cytokine-activated lymphocytes
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K40/00Cellular immunotherapy
    • A61K40/10Cellular immunotherapy characterised by the cell type used
    • A61K40/11T-cells, e.g. tumour infiltrating lymphocytes [TIL] or regulatory T [Treg] cells; Lymphokine-activated killer [LAK] cells
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K40/00Cellular immunotherapy
    • A61K40/30Cellular immunotherapy characterised by the recombinant expression of specific molecules in the cells of the immune system
    • A61K40/31Chimeric antigen receptors [CAR]
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    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K40/00Cellular immunotherapy
    • A61K40/30Cellular immunotherapy characterised by the recombinant expression of specific molecules in the cells of the immune system
    • A61K40/32T-cell receptors [TCR]
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K40/00Cellular immunotherapy
    • A61K40/40Cellular immunotherapy characterised by antigens that are targeted or presented by cells of the immune system
    • A61K40/41Vertebrate antigens
    • A61K40/42Cancer antigens
    • A61K40/4202Receptors, cell surface antigens or cell surface determinants
    • A61K40/421Immunoglobulin superfamily
    • A61K40/4211CD19 or B4
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K40/00Cellular immunotherapy
    • A61K40/40Cellular immunotherapy characterised by antigens that are targeted or presented by cells of the immune system
    • A61K40/41Vertebrate antigens
    • A61K40/42Cancer antigens
    • A61K40/4254Adhesion molecules, e.g. NRCAM, EpCAM or cadherins
    • A61K40/4255Mesothelin [MSLN]
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    • A61K48/00Medicinal preparations containing genetic material which is inserted into cells of the living body to treat genetic diseases; Gene therapy
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    • C07K14/435Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from animals; from humans
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    • C07K14/485Epidermal growth factor [EGF], i.e. urogastrone
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    • C07K14/435Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from animals; from humans
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    • C07K16/00Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies
    • C07K16/18Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies against material from animals or humans
    • C07K16/28Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies against material from animals or humans against receptors, cell surface antigens or cell surface determinants
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    • C07KPEPTIDES
    • C07K16/00Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies
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    • C07K16/28Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies against material from animals or humans against receptors, cell surface antigens or cell surface determinants
    • C07K16/2803Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies against material from animals or humans against receptors, cell surface antigens or cell surface determinants against the immunoglobulin superfamily
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    • C07ORGANIC CHEMISTRY
    • C07KPEPTIDES
    • C07K16/00Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies
    • C07K16/18Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies against material from animals or humans
    • C07K16/28Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies against material from animals or humans against receptors, cell surface antigens or cell surface determinants
    • C07K16/30Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies against material from animals or humans against receptors, cell surface antigens or cell surface determinants from tumour cells
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    • C07ORGANIC CHEMISTRY
    • C07KPEPTIDES
    • C07K2317/00Immunoglobulins specific features
    • C07K2317/20Immunoglobulins specific features characterized by taxonomic origin
    • C07K2317/22Immunoglobulins specific features characterized by taxonomic origin from camelids, e.g. camel, llama or dromedary
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    • C07KPEPTIDES
    • C07K2317/00Immunoglobulins specific features
    • C07K2317/50Immunoglobulins specific features characterized by immunoglobulin fragments
    • C07K2317/56Immunoglobulins specific features characterized by immunoglobulin fragments variable (Fv) region, i.e. VH and/or VL
    • C07K2317/569Single domain, e.g. dAb, sdAb, VHH, VNAR or nanobody®
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    • C07KPEPTIDES
    • C07K2317/00Immunoglobulins specific features
    • C07K2317/60Immunoglobulins specific features characterized by non-natural combinations of immunoglobulin fragments
    • C07K2317/62Immunoglobulins specific features characterized by non-natural combinations of immunoglobulin fragments comprising only variable region components
    • C07K2317/622Single chain antibody (scFv)
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    • C07KPEPTIDES
    • C07K2319/00Fusion polypeptide
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07KPEPTIDES
    • C07K2319/00Fusion polypeptide
    • C07K2319/01Fusion polypeptide containing a localisation/targetting motif
    • C07K2319/03Fusion polypeptide containing a localisation/targetting motif containing a transmembrane segment
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07KPEPTIDES
    • C07K2319/00Fusion polypeptide
    • C07K2319/32Fusion polypeptide fusions with soluble part of a cell surface receptor, "decoy receptors"
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07KPEPTIDES
    • C07K2319/00Fusion polypeptide
    • C07K2319/33Fusion polypeptide fusions for targeting to specific cell types, e.g. tissue specific targeting, targeting of a bacterial subspecies
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    • C07K2319/00Fusion polypeptide
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    • C07KPEPTIDES
    • C07K2319/00Fusion polypeptide
    • C07K2319/70Fusion polypeptide containing domain for protein-protein interaction
    • C07K2319/74Fusion polypeptide containing domain for protein-protein interaction containing a fusion for binding to a cell surface receptor
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    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
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    • C12N2510/00Genetically modified cells
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    • C12N5/00Undifferentiated human, animal or plant cells, e.g. cell lines; Tissues; Cultivation or maintenance thereof; Culture media therefor
    • C12N5/06Animal cells or tissues; Human cells or tissues
    • C12N5/0602Vertebrate cells
    • C12N5/0634Cells from the blood or the immune system
    • C12N5/0636T lymphocytes
    • GPHYSICS
    • G01MEASURING; TESTING
    • G01NINVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N33/00Investigating or analysing materials by specific methods not covered by groups G01N1/00 - G01N31/00
    • G01N33/48Biological material, e.g. blood, urine; Haemocytometers
    • G01N33/50Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing
    • G01N33/53Immunoassay; Biospecific binding assay; Materials therefor
    • GPHYSICS
    • G01MEASURING; TESTING
    • G01NINVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
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    • G01N33/48Biological material, e.g. blood, urine; Haemocytometers
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    • G01N33/53Immunoassay; Biospecific binding assay; Materials therefor
    • G01N33/566Immunoassay; Biospecific binding assay; Materials therefor using specific carrier or receptor proteins as ligand binding reagents where possible specific carrier or receptor proteins are classified with their target compounds
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    • G01MEASURING; TESTING
    • G01NINVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
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    • G01N33/48Biological material, e.g. blood, urine; Haemocytometers
    • G01N33/50Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing
    • G01N33/68Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing involving proteins, peptides or amino acids
    • G01N33/6863Cytokines, i.e. immune system proteins modifying a biological response such as cell growth proliferation or differentiation, e.g. TNF, CNF, GM-CSF, lymphotoxin, MIF or their receptors
    • GPHYSICS
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    • G01NINVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N33/00Investigating or analysing materials by specific methods not covered by groups G01N1/00 - G01N31/00
    • G01N33/48Biological material, e.g. blood, urine; Haemocytometers
    • G01N33/50Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing
    • G01N33/68Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing involving proteins, peptides or amino acids
    • G01N33/6872Intracellular protein regulatory factors and their receptors, e.g. including ion channels

Abstract

The prevent invention relates to an isolated nucleic acid encoding chimeric Notch receptor polypeptides defined by an extracellular domain comprising a single-chain Fv (scFv) or a nanobody that specifically binds to an antigen; a Notch regulatory region comprising a Lin 12-Notch repeat, a heterodimerization domain comprising an S2 proteolytic cleavage site, a transmembrane domain comprising an S3 proteolytic cleavage site; and an intracellular domain, heterologous to the Notch polypeptide regulatory region wherein the chimeric Notch polypeptide does not bind its naturally-occurring ligand Delta. Further included are vectors encoding said chimeric Notch polypeptide, cells comprising said vectors and use in treatment of cancer.

Claims (25)

1. An isolated nucleic acid comprising a nucleotide ce encoding a chimeric polypeptide comprising, from N-terminal to C-terminal and in covalent linkage: a) an extracellular domain comprising a single-chain Fv (scFv) or a nanobody that specifically binds to an antigen; b) a Notch regulatory region comprising a Lin 12-Notch repeat, a heterodimerization domain comprising an S2 proteolytic cleavage site, and a transmembrane domain comprising an S3 proteolytic cleavage site; and c) an intracellular domain, heterologous to the Notch polypeptide regulatory region, comprising a transcriptional activator comprising a DNA binding domain, wherein the transcriptional activator replaces a naturally-occurring intracellular notch domain, and wherein g of the scFv or the nanobody to an antigen in trans induces cleavage at the S2 and S3 cleavage sites, thereby releasing the intracellular domain and wherein the chimeric Notch polypeptide does not bind its naturally-occurring ligand Delta.
2. The isolated nucleic acid of claim 1, wherein release of the intracellular domain causes the transcriptional activator to induce sion of an endogenous gene product in a cell comprising the c acid.
3. The isolated nucleic acid of claim 1 or 2, wherein release of the intracellular domain causes the transcriptional activator to induce expression of a heterologous gene product in a cell sing the nucleic acid.
4. The isolated nucleic acid of any one of claims 1 to 3, wherein the nucleic acid further ses a transcriptional control element, responsive to the transcriptional activator, operably linked to a nucleotide ce encoding a chimeric antigen receptor (CAR).
5. The isolated nucleic acid of any one of claims 1 to 4, n the nucleic acid further comprises a transcriptional control t, responsive to the transcriptional activator, operably linked to a nucleotide sequence encoding a therapeutic antibody for the treatment of .
6. The ed c acid of claim 5, wherein the therapeutic antibody for the treatment of cancer is selected from pembrolizumab and tremelimumab.
7. The isolated nucleic acid of any one of claims 1 to 6, wherein the Notch regulatory region has at least 85% amino acid sequence identity to any one of the Notch regulatory regions of SEQ ID NO:131, 132 and 135-137.
8. The isolated nucleic acid of any one of claims 1 to 7, wherein the Notch regulatory region further comprises, at its N-terminus, one or more epidermal growth factor (EGF) s.
9. The ed nucleic acid of claim 8, wherein the Notch regulatory region comprises, at its inus, 2 to 11 EGF repeats.
10. The isolated nucleic acid of any one of claims 1 to 9, wherein the chimeric Notch polypeptide comprises a synthetic linker.
11. The isolated nucleic acid of claim 8, wherein the chimeric Notch polypeptide comprises a synthetic linker between the one or more EGF repeats.
12. The isolated nucleic acid of any one of claims 1 to 11, wherein the antigen is a cancer associated n.
13. The isolated nucleic acid of claim 12, wherein the S2 proteolytic cleavage site is an ADAMtype protease cleavage site comprising an Ala-Val dipeptide sequence.
14. The isolated nucleic acid of claim 12 or 13, wherein the S3 lytic cleavage site is a gamma-secretase (?-secretase) cleavage site comprising a Gly-Val dipeptide sequence.
15. The isolated nucleic acid of any one of claims 1 to 14, wherein the chimeric Notch polypeptide further comprises an S1 proteolytic cleavage site.
16. The isolated nucleic acid of claim 15, wherein the S1 proteolytic ge site is a furin like se ge site comprising the amino acid sequence Arg-X-(Arg/Lys)-Arg, where X is any amino acid.
17. The isolated nucleic acid of any one of claims 1 to 14, wherein the chimeric Notch polypeptide lacks an S1 proteolytic cleavage site.
18. A recombinant expression vector comprising the nucleic acid of any one of claims 1 to
19. The inant expression vector of claim 18, wherein the recombinant expression vector further ses a transcriptional control element, responsive to the transcriptional activator, operably linked to a nucleotide sequence encoding a chimeric antigen receptor (CAR).
20. The recombinant expression vector of claim 18 or 19, wherein the recombinant expression vector further comprises a transcriptional control element, responsive to the transcriptional activator, ly linked to a nucleotide sequence encoding a therapeutic antibody for the treatment of cancer.
21. An in vitro or ex vivo cell comprisingthe nucleic acid of any one of claims 1 to 17 or the recombinant expression vector of any one of claims 18 to 20.
22. The in vitro or ex vivo cell of claim 21, wherein the cell is an immune cell, a , an epithelial cell, and endothelial cell, or a stem cell.
23. The in vitro or ex vivo cell of claim 22, wherein the immune cell is a T cell, a B cell, a monocyte, a natural killer cell, a dendritic cell, a macrophage, a regulatory T cell, a helper T cell, or a cytotoxic T cell.
24. The in vitro or ex vivo cell of claim 23, wherein the immune cell is a T cell.
25. Use of the nucleic acid of any one of claims 1 to 17 or the recombinant sion vector of any one of claims 18 to 20 or in vitro or ex vivo cell of any one of claims 21 to 24 in the manufacture of a medicament for treating cancer in an individual, wherein the antigen to which the extracellular domain of the chimeric polypeptide specifically binds is a cancer-associated antigen.
NZ733789A 2016-02-23 Binding-triggered transcriptional switches and methods of use thereof NZ733789B2 (en)

Priority Applications (1)

Application Number Priority Date Filing Date Title
NZ773109A NZ773109B2 (en) 2016-02-23 Binding-triggered transcriptional switches and methods of use thereof

Applications Claiming Priority (4)

Application Number Priority Date Filing Date Title
US201562120256P 2015-02-24 2015-02-24
US201562257153P 2015-11-18 2015-11-18
US201562269758P 2015-12-18 2015-12-18
PCT/US2016/019188 WO2016138034A1 (en) 2015-02-24 2016-02-23 Binding-triggered transcriptional switches and methods of use thereof

Publications (2)

Publication Number Publication Date
NZ733789A NZ733789A (en) 2025-02-28
NZ733789B2 true NZ733789B2 (en) 2025-06-04

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