NZ710925B2 - Chimeric antigen receptor and methods of use thereof - Google Patents
Chimeric antigen receptor and methods of use thereof Download PDFInfo
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- NZ710925B2 NZ710925B2 NZ710925A NZ71092514A NZ710925B2 NZ 710925 B2 NZ710925 B2 NZ 710925B2 NZ 710925 A NZ710925 A NZ 710925A NZ 71092514 A NZ71092514 A NZ 71092514A NZ 710925 B2 NZ710925 B2 NZ 710925B2
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Abstract
The present disclosure provides a heterodimeric, conditionally active chimeric antigen receptor (CAR), and a nucleic acid comprising a nucleotide sequence encoding the CAR. The present disclosure provides cells genetically modified to produce the CAR. A CAR of the present disclosure can be used in various methods, which are also provided. The heterodimeric, conditionally active CAR comprises a) a first polypeptide comprising: i) a first member of a specific binding pair; ii) a first co-stimulatory domain; iii) a first member of a dimerization pair; and iv) a transmembrane domain interposed between the first member of a specific binding pair and the first co-stimulatory domain; and b) a second polypeptide comprising: i) a second member of the dimerization pair; and ii) an intracellular signaling domain; optionally further comprising a transmembrane domain and/or a second co-stimulatory domain, wherein the first and second members of the dimerization pair form a homodimer or a heterodimer in the presence of a dimerizing agent. arious methods, which are also provided. The heterodimeric, conditionally active CAR comprises a) a first polypeptide comprising: i) a first member of a specific binding pair; ii) a first co-stimulatory domain; iii) a first member of a dimerization pair; and iv) a transmembrane domain interposed between the first member of a specific binding pair and the first co-stimulatory domain; and b) a second polypeptide comprising: i) a second member of the dimerization pair; and ii) an intracellular signaling domain; optionally further comprising a transmembrane domain and/or a second co-stimulatory domain, wherein the first and second members of the dimerization pair form a homodimer or a heterodimer in the presence of a dimerizing agent.
Description
CHIMERIC ANTIGEN RECEPTOR AND METHODS OF USE THEREOF
CROSS-REFERENCE
This application claims the benefit of US. Provisional Patent Application No. 61/765,585,
filed February 15, 2013, which application is incorporated herein by nce in its
entirety.
STATEMENT REGARDING LLY SPONSORED RESEARCH
This invention was made with government support under Grant Nos. EYOl6546 and
GMlOl782 awarded by the National Institutes of Health. The ment has n rights
in the invention.
INCORPORATION BY REFERENCE OF SEQUENCE LISTING PROVIDED AS A TEXT FILE
A Sequence Listing is provided herewith as a text file, “UCSF—464WO SeqList_ST25.txt”
created on February 13, 2014 and having a size of 153 KB. The contents of the text file are
incorporated by reference herein in their entirety.
INTRODUCTION
In cell—based ve immunotherapy, immune cells isolated from a patient can be
modified to express synthetic proteins that enable the cells to perform new therapeutic
ons after they are subsequently transferred back into the patient. An example of such a
synthetic protein is a chimeric antigen receptor (CAR). An example of a currently used
CAR is a fusion of an extracellular recognition domain (e. g., an antigen—binding domain), a
transmembrane domain, and one or more intracellular signaling domains. Upon n
engagement, the intracellular signaling portion of the CAR can initiate an activation—related
response in an immune cell, such are release of cytolytic molecules to induce tumor cell
death, etc. r, such CARs are not capable of being pharmacologically controlled.
There is a need in the art for a conditionally activatable CAR that can be controlled
pharmacologically.
The present sure provides a heterodimeric, conditionally active chimeric antigen
or (CAR), and a nucleic acid comprising a nucleotide sequence encoding the CAR.
The present disclosure provides cells genetically ed to produce the CAR. A CAR of
the present disclosure can be used in various methods, which are also provided.
BRIEF DESCRIPTION OF THE DRAWINGS
Figures 1A and 1B provide nucleotide and amino acid sequences of the domains of
construct #122.
Figures 2A and 2B provide nucleotide and amino acid sequences of the domains of
construct #123.
Figures 3A and 3B provide nucleotide and amino acid sequences of the domains of
construct #125.
Figure 4 es tide and amino acid sequences of the domains of construct #126.
Figures 5A and 5B provide nucleotide and amino acid ces of the s of
construct #168.
Figures 6A—C provide nucleotide and amino acid sequences of the domains of construct
#169.
Figures 7A and 7B e nucleotide and amino acid sequences of the domains of
construct #170.
Figures 8A and 8B provide nucleotide and amino acid sequences of the domains of
construct #197.
Figures 9A—C provide nucleotide and amino acid sequences of the domains of construct
#206.
s 10A and 10B provide nucleotide and amino acid ces of the domains of
construct #207.
Figures 11A—C provide nucleotide and amino acid sequences of the domains of construct
#199.
Figure 12 depicts IL—2 production triggered by five On—switch CAR variants.
Figure 13 depicts IL—2 production by control Jurkat lines.
Figure 14 depicts a comparison between CAR constructs “122 + 206” and “197 + 206”.
Figure 15 depicts cytotoxicity data with the On—switch CAR “197+206.”
Figure 16 depicts T cell activation data using CAR constructs “122 + 199”; “197 + 199”;
and “122 + 168.”
Figure 17 is a schematic representation of an exemplary tch CAR.
Figures 18A and 18B depict various exemplary On—switch CAR.
Figures l9A—G depict IL—2 production triggered by 3 different On—switch CAR variants
recognizing human mesothelin.
Figures 20A—C depict IL—2 production triggered by an On—switch CAR variant with a
gibberellic acid responsive dimerization pair.
Figures 2lA—D depict exemplary On—switch CARs and conventional CARs with various co—
stimulatory domains.
Figures 22A and 22B provide nucleotide and amino acid sequences of the domains of
construct #270.
Figures 23A and 23B provide nucleotide and amino acid sequences of the domains of
construct #300.
Figures 24A and 24B provide nucleotide and amino acid sequences of the domains of
construct #336.
Figures 25A and 25B provide tide and amino acid sequences of the domains of
construct #337.
Figures 26A and 26B e nucleotide and amino acid sequences of the domains of
construct #357.
Figures 27A and 27B e tide and amino acid sequences of the domains of
construct #365.
Figures 28A and 28B provide nucleotide and amino acid sequences of the domains of
construct #366.
s 29A and 29B provide nucleotide and amino acid sequences of the domains of
construct #367.
Figures 30A and 30B provide nucleotide and amino acid sequences of the domains of
uct #398.
Figures 31A and 31B e tide and amino acid sequences of the domains of
construct #399.
Figures 32A and 32B provide nucleotide and amino acid sequences of the domains of
construct #400.
Figures 33A and 33B provide nucleotide and amino acid sequences of the domains of
uct #358.
DEFINITIONS
The terms ucleotide” and “nucleic acid,” used interchangeably herein, refer to a
polymeric form of nucleotides of any length, either ribonucleotides or
2014/016527
deoxyribonucleotides. Thus, this term includes, but is not limited to, single—, double—, or
stranded DNA or RNA, genomic DNA, cDNA, DNA—RNA hybrids, or a polymer
comprising purine and pyrimidine bases or other natural, ally or biochemically
modified, non—natural, or derivatized nucleotide bases.
The terms "antibodies" and “immunoglobulin” include antibodies or immunoglobulins of
any isotype, fragments of antibodies which retain specific binding to n, including, but
not limited to, Fab, FV, scFV, and Fd fragments, chimeric antibodies, humanized dies,
—chain antibodies, and fusion ns comprising an antigen—binding n of an
antibody and a tibody protein.
"Antibody fragments" comprise a portion of an intact antibody, for e, the antigen
binding or variable region of the intact antibody. Examples of antibody fragments include
Fab, Fab', F(ab')2, and FV fragments; diabodies; linear antibodies (Zapata et al., Protein Eng.
8(10): 1057—1062 (1995)); single—chain antibody molecules; and multispecific antibodies
formed from antibody fragments. Papain ion of antibodies produces two identical
antigen—binding fragments, called "Fab" fragments, each with a single antigen—binding site,
and a residual "Fc" fragment, a designation reflecting the ability to crystallize readily.
Pepsin treatment yields an 2 fragment that has two antigen combining sites and is still
capable of cross—linking antigen.
"Single—chain FV" or "st" antibody fragments se the VH and VL domains of
antibody, wherein these domains are present in a single polypeptide chain. In some
ments, the FV polypeptide further comprises a polypeptide linker between the VH
and VL s, which s the sFV to form the desired structure for antigen binding.
For a reView of sFV, see Pluckthun in The Pharmacology ofMonoclonal Antibodies, vol.
113, Rosenburg and Moore eds., Springer-Verlag, New York, pp. 269-315 (I994).
As used herein, the term "affinity" refers to the equilibrium constant for the reversible
binding of two agents and is expressed as a dissociation constant (Kd). ty can be at
least l—fold greater, at least 2—fold greater, at least 3—fold greater, at least 4—fold greater, at
least 5—fold greater, at least 6—fold greater, at least 7—fold greater, at least 8—fold greater, at
least 9—fold greater, at least lO—fold greater, at least 20—fold r, at least 30—fold greater,
at least 40—fold greater, at least 50—fold greater, at least 60—fold greater, at least 70—fold
greater, at least 80—fold greater, at least 90—fold greater, at least lOO—fold greater, or at least
lOOO—fold greater, or more, than the affinity of an antibody for unrelated amino acid
sequences. Affinity of an antibody to a target protein can be, for example, from about 100
nanomolar (nM) to about 0.1 nM, from about 100 nM to about 1 picomolar (pM), or from
about 100 nM to about 1 femtomolar (fM) or more. As used herein, the term “avidity” refers
to the resistance of a complex of two or more agents to dissociation after dilution. The terms
“immunoreactive” and “preferentially binds” are used interchangeably herein with respect
to antibodies and/or antigen—binding fragments.
The term “binding” refers to a direct association n two molecules, due to, for
example, covalent, electrostatic, hydrophobic, and ionic and/or hydrogen—bond interactions,
including interactions such as salt bridges and water bridges. Non—specific binding would
refer to binding with an affinity of less than about 10'7 M, e. g., binding with an affinity of
'6 M, 10'5 M, 10'4 M, etc.
As used herein, the term “hinge region” refers to a flexible polypeptide connector region
(also referred to herein as “hinge” or “spacer”) providing structural flexibility and g
to flanking polypeptide regions and can consist of natural or synthetic polypeptides. A
"hinge region" d from an immunoglobulin (e.g., IgGl) is generally d as
stretching from Glu216 to Proz30 of human IgGl (Burton (1985) Molec. Immunol., 22: 161—
206). Hinge regions of other IgG isotypes may be aligned with the IgGl sequence by
placing the first and last cysteine residues forming inter—heavy chain ide (S—S) bonds
in the same positions. The hinge region may be of natural occurrence or non—natural
occurrence, including but not limited to an d hinge region as described in US. Pat. No.
,677,425. The hinge region can include complete hinge region derived from an antibody of
a different class or subclass from that of the CH1 . The term “hinge region” can also
include regions derived from CD8 and other receptors that e a r function in
providing flexibility and spacing to flanking regions.
An "isolated" polypeptide is one that has been identified and separated and/or recovered
from a component of its natural nment. Contaminant components of its l
environment are materials that would interfere with diagnostic or therapeutic uses for the
polypeptide, and may include enzymes, hormones, and other proteinaceous or
nonproteinaceous solutes. In some embodiments, the ptide will be purified (l) to
greater than 90%, greater than 95%, or greater than 98%, by weight of antibody as
determined by the Lowry method, for example, more than 99% by , (2) to a degree
sufficient to obtain at least 15 residues of N—terminal or internal amino acid sequence by use
of a spinning cup sequenator, or (3) to homogeneity by sodium l sulfate—
polyacrylamide gel electrophoresis (SDS—PAGE) under reducing or nonreducing conditions
using Coomassie blue or silver stain. Isolated polypeptide includes the polypeptide in situ
within recombinant cells since at least one ent of the polypeptide’s natural
environment will not be present. In some instances, ed polypeptide will be prepared by
at least one purification step.
As used herein, the term “immune cells” generally includes white blood cells (leukocytes)
which are derived from hematopoietic stem cells (HSC) produced in the bone marrow.
“Immune cells” includes, e. g., lymphocytes (T cells, B cells, natural killer (NK) cells) and
myeloid—derived cells (neutrophil, eosinophil, basophil, te, macrophage, dendritic
cells).
“T cell” includes all types of immune cells expressing CD3 including T—helper cells (CD4+
cells), cytotoxic T—cells (CD8+ cells), T—regulatory cells (Treg) and gamma—delta T cells.
A “cytotoxic cell” includes CD8+ T cells, natural—killer (NK) cells, and neutrophils, which
cells are capable of mediating cytotoxicity responses.
As used herein, the term “stem cell” generally includes pluripotent or multipotent stem
cells. “Stem cells” includes, e. g., nic stem cells (ES); mesenchymal stem cells
(MSC); induced—pluripotent stem cells (iPS); and committed progenitor cells (hematopoeitic
stem cells (HSC); bone marrow d cells, etc.).
As used herein, the terms "treatment," "treating," and the like, refer to obtaining a desired
pharmacologic and/or physiologic effect. The effect may be prophylactic in terms of
completely or partially ting a disease or symptom thereof and/or may be therapeutic
in terms of a partial or complete cure for a disease and/or e effect attributable to the
e. ment," as used herein, covers any treatment of a disease in a mammal, e.g., in
a human, and es: (a) preventing the disease from occurring in a subject which may be
posed to the disease but has not yet been diagnosed as having it; (b) inhibiting the
disease, i.e., arresting its development; and (c) relieving the e, i.e., causing regression
of the e.
The terms “individual,” “subject,” “host,” and “patient,” used interchangeably herein, refer
to a mammal, including, but not limited to, s (e. g., rats, mice), lagomorphs (e. g.,
rabbits), non—human primates, humans, canines, felines, ungulates (e. g., equines, bovines,
ovines, porcines, caprines), etc.
A “therapeutically effective amount” or “efficacious amount” refers to the amount of an
agent, or combined amounts of two agents, that, when administered to a mammal or other
subject for treating a disease, is sufficient to effect such treatment for the disease. The
“therapeutically effective amount” will vary ing on the agent(s), the disease and its
severity and the age, weight, etc., of the subject to be treated.
2014/016527
Before the present ion is further described, it is to be understood that this invention is
not limited to particular ments described, as such may, of course, vary. It is also to
be tood that the terminology used herein is for the purpose of describing particular
embodiments only, and is not intended to be limiting, since the scope of the present
invention will be limited only by the appended claims.
Where a range of values is provided, it is tood that each intervening value, to the
tenth of the unit of the lower limit unless the t clearly dictates otherwise, between the
upper and lower limit of that range and any other stated or ening value in that stated
range, is encompassed within the invention. The upper and lower limits of these smaller
ranges may independently be included in the smaller ranges, and are also encompassed
within the invention, subject to any specifically excluded limit in the stated range. Where
the stated range includes one or both of the limits, ranges excluding either or both of those
included limits are also included in the invention.
Unless defined otherwise, all technical and ific terms used herein have the same
meaning as commonly understood by one of ordinary skill in the art to which this invention
belongs. Although any methods and materials similar or equivalent to those described
herein can also be used in the practice or testing of the present invention, the preferred
methods and als are now described. All publications ned herein are
incorporated herein by reference to disclose and describe the methods and/or materials in
connection with which the publications are cited.
It must be noted that as used herein and in the appended claims, the ar forms “a,”
“an,” and “the” include plural referents unless the context clearly dictates otherwise. Thus,
for example, reference to “a chimeric antigen receptor” includes a plurality of such chimeric
antigen receptor and reference to “the dimerizer—binding pair” includes reference to one or
more dimerizer—binding pairs and equivalents thereof known to those skilled in the art, and
so forth. It is further noted that the claims may be drafted to exclude any optional element.
As such, this statement is intended to serve as antecedent basis for use of such exclusive
ology as “solely,77 4‘only” and the like in connection with the recitation of claim
elements, or use of a “negative” limitation.
It is appreciated that certain features of the invention, which are, for clarity, described in the
context of separate embodiments, may also be provided in combination in a single
embodiment. Conversely, various features of the invention, which are, for brevity, described
in the context of a single embodiment, may also be provided tely or in any suitable
sub—combination. All combinations of the embodiments pertaining to the invention are
ically embraced by the present invention and are disclosed herein just as if each and
every combination was individually and explicitly disclosed. In addition, all sub—
combinations of the s embodiments and elements thereof are also ically
embraced by the present invention and are disclosed herein just as if each and every such
sub—combination was individually and explicitly disclosed .
The publications discussed herein are provided solely for their disclosure prior to the filing
date of the present ation. Nothing herein is to be ued as an admission that the
present invention is not entitled to antedate such publication by virtue of prior ion.
Further, the dates of ation provided may be different from the actual publication dates
which may need to be independently confirmed.
DETAILED DESCRIPTION
The present disclosure provides a dimeric, conditionally active chimeric antigen
receptor (CAR), and a nucleic acid comprising a nucleotide ce encoding the CAR.
The present disclosure provides cells genetically modified to produce the CAR. A CAR of
the present disclosure can be used in various methods, which are also provided.
HETERODIMERIC, CONDITIONALLY ACTIVE CHIMERIC ANTIGEN RECEPTOR.
The present disclosure provides a heterodimeric, ionally active chimeric antigen
receptor, which, for simplicity, is referred to herein as “CAR.”
In some embodiments, a CAR of the present disclosure comprises: a) a first polypeptide
comprising: i) a member of a specific binding pair (e. g., an antigen—binding domain); ii) a
first modulatory domain; iii) a first member of a dimerization pair; and iv) a transmembrane
domain interposed between the member of a specific g pair (e. g., an antigen—binding
domain) and the first modulatory domain; and b) a second polypeptide comprising: i) a
transmembrane domain; ii) a second modulatory domain; iii) a second member of the
dimerization pair; and iv) an intracellular signaling domain. The modulatory domain can be
a mulatory domain.
In some embodiments, a CAR of the present disclosure comprises: a) a first polypeptide
comprising: i) a member of a ic binding pair (e. g., an antigen—binding domain); ii) a
first co—stimulatory domain; iii) a first member of a dimerization pair (e.g., a dimerizer—
binding pair); and iv) a transmembrane domain interposed between the member of a specific
binding pair (e. g., an antigen—binding domain) and the first co—stimulatory domain; and b) a
second polypeptide comprising: i) a embrane domain; ii) a second co—stimulatory
domain; iii) a second member of the dimerization pair (e. g., the dimerizer—binding pair); and
iV) an intracellular signaling domain.
In some embodiments, a CAR of the present disclosure comprises: a) a first ptide
comprising: i) a member of a specific binding pair (e. g., an antigen—binding ); ii) a
modulatory domain; iii) a first member of a dimerization pair (e.g., a dimerizer—binding
pair); iV) a transmembrane domain interposed between the member of a specific binding
pair (e. g., an n—binding domain) and the modulatory domain; and b) a second
polypeptide comprising: i) a second member of the zation pair (e. g., the dimerizer—
binding pair); and ii) an intracellular signaling domain. The modulatory domain can be a co—
atory domain.
In some embodiments, a CAR of the present disclosure comprises: a) a first polypeptide
comprising: i) a member of a specific binding pair (e. g., an antigen—binding domain); ii) a
co—stimulatory domain; iii) a first member of a dimerization pair (e.g., a dimerizer—binding
pair); iV) a transmembrane domain interposed between the member of a specific binding
pair (e. g., an antigen—binding domain) and the co—stimulatory domain; and b) a second
polypeptide comprising: i) a second member of the zation pair (e. g., the dimerizer—
binding pair); and ii) an intracellular signaling domain.
An example of a subject CAR is ented schematically in Figure 17. A CAR of the
present disclosure can be t in the plasma membrane of a eukaryotic cell, e. g., a
mammalian cell, where suitable mammalian cells include, but are not limited to, a cytotoxic
cell, a T lymphocyte, a stem cell, a progeny of a stem cell, a progenitor cell, a y of a
itor cell, and an NK cell. When present in the plasma membrane of a eukaryotic cell,
a CAR of the present disclosure is active in the presence of: l) a zing agent binds to
the first and second members of the dimerizer—binding pair in the CAR, or otherwise
induces dimerization of the first and second members of the dimer; and 2) a factor that
binds the member of a specific binding pair (e. g., an antigen—binding domain), e. g., an
antigen that binds the antigen—binding domain of the CAR. The factor that binds the
member of the specific binding pair is a second member of the ic binding pair. The
second member of the specific binding pair can be a soluble (e. g., not bound to a cell)
factor; a factor present on the surface of a cell such as a target cell; a factor presented on a
solid surface; a factor present in a lipid bilayer; and the like. Where the member of a
specific binding pair is an antibody, and the second member of the specific binding pair is
an antigen, the antigen can be a soluble (e. g., not bound to a cell) antigen; an n present
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on the surface of a cell such as a target cell; an antigen presented on a solid surface; an
antigen present in a lipid bilayer; and the like.
In some instances, a CAR of the present disclosure, when present in the plasma membrane
of a eukaryotic cell, and when activated by a second member of a specific binding pair that
binds the member of the specific—binding pair of the CAR (e. g., an n that binds the
antigen—binding domain of the CAR) and a dimerizing agent, increases expression of at least
one nucleic acid in the cell. For example, in some cases, a CAR of the present disclosure,
when present in the plasma ne of a eukaryotic cell, and when activated by an
n that binds the antigen—binding domain of the CAR and a dimerizing agent, increases
expression of at least one nucleic acid in the cell by at least about 10%, at least about 15%,
at least about 20%, at least about 25%, at least about 30%, at least about 40%, at least about
50%, at least about 75%, at least about 2—fold, at least about 2.5—fold, at least about 5—fold,
at least about lO—fold, or more than lO—fold, compared with the level of transcription of the
nucleic acid in the absence of the antigen and/or the dimerizing agent.
As an example, the second polypeptide of a CAR of the present disclosure can include an
immunoreceptor tyrosine—based activation motif (ITAM)—containing intracellular signaling
polypeptide; in such cases, a CAR of the present disclosure, when present in the plasma
ne of a eukaryotic cell, and when activated by an antigen that binds the antigen—
binding domain of the CAR and a dimerizing agent, increases nuclear factor of activated T
cells (NFAT)—dependent transcription. NFAT—dependent transcription es transcription
induced by any member of the NFAT family, ing, e. g., , NFATc2, NFATc3,
NFATc4, NFAT5; AP—l; Spl; NKKB; and the like.
A CAR of the present disclosure, when present in the plasma membrane of a eukaryotic
cell, and when activated by an antigen that binds the n—binding domain of the CAR
and a dimerizing agent, can, in some instances, result in increased production of one or
more cytokines by the cell. For example, a CAR of the present disclosure, when present in
the plasma membrane of a eukaryotic cell, and when activated by an antigen that binds the
antigen—binding domain of the CAR and a dimerizing agent, can increase production of a
ne by the cell by at least about 10%, at least about 15%, at least about 20%, at least
about 25%, at least about 30%, at least about 40%, at least about 50%, at least about 75%, at
least about , at least about 2.5—fold, at least about 5—fold, at least about lO—fold, or
more than d, compared with the amount of cytokine produced by the cell in the
absence of the antigen and/or the dimerizing agent. Cytokines whose tion can be
increased include, but are not limited to, an interferon, e. g., IL—2, interferon gamma (IFN—y),
tumor necrosis factor—alpha (TNF—(x), IL—l5, IL—12, IL—4, IL—5, IL—lO; a chemokine; a
growth factor; and the like.
In some cases, a CAR of the present disclosure, when present in the plasma membrane of a
eukaryotic cell, and when activated by an antigen that binds the antigen—binding domain of
the CAR and a dimerizing agent, can result in both an increase in transcription of a nucleic
acid in the cell and an increase in production of a cytokine by the cell.
In some instances, a CAR of the present disclosure, when present in the plasma ne
of a eukaryotic cell, and when activated by a dimerizing agent, s in cytotoxic activity
by the cell toward a target cell that expresses on its cell e an antigen to which the
antigen—binding domain of the first polypeptide of the CAR binds. For example, where the
eukaryotic cell is a cytotoxic cell (e. g., an NK cell or a cytotoxic T lymphocyte), a CAR of
the present sure, when present in the plasma membrane of the cell, and when activated
by a dimerizing agent, increases cytotoxic activity of the cell toward a target cell that
expresses on its cell surface an antigen to which the n—binding domain of the first
polypeptide of the CAR binds. For example, where the eukaryotic cell is an NK cell or a T
lymphocyte, a CAR of the present disclosure, when present in the plasma membrane of the
cell, and when activated by a dimerizing agent, increases cytotoxic activity of the cell by at
least about 10%, at least about 15%, at least about 20%, at least about 25%, at least about
%, at least about 40%, at least about 50%, at least about 75%, at least about 2—fold, at
least about 2.5—fold, at least about 5—fold, at least about lO—fold, or more than lO—fold,
compared to the cytotoxic activity of the cell in the e of the dimerizing agent.
In some cases, a CAR of the t disclosure, when present in the plasma membrane of a
eukaryotic cell, and when activated by an antigen that binds the antigen—binding domain of
the CAR and a dimerizing agent, can result in other CAR activation d events such as
proliferation and expansion (either due to increased cellular division or anti—apoptotic
ses).
In some cases, a CAR of the present disclosure, when present in the plasma membrane of a
eukaryotic cell, and when activated by an antigen that binds the antigen—binding domain of
the CAR and a dimerizing agent, can result in other CAR tion related events such as
intracellular signaling tion, cellular differentiation, or cell death.
A CAR of the present sure can be present in a otic cell membrane, where the
first and second polypeptides of the CAR are not covalently linked to one another. A CAR
of the present disclosure can be present in a eukaryotic cell membrane as a single
heterodimer that is not covalently linked to any other polypeptide in the membrane.
Alternatively, a first CAR of the t disclosure can be present in a eukaryotic cell
ne as a heterodimer that is covalently or valently linked to a second CAR of
the present disclosure. In some cases, the first and the second CAR are covalently linked via
a disulfide bond formed between cysteines present in a hinge region present in both the first
polypeptide of the first CAR and the first polypeptide of the second CAR.
In some cases, a CAR of the present disclosure can be present in a eukaryotic cell
membrane, where the first polypeptides of the CAR comprise an antibody fragment and the
second polypeptides of the CAR comprise a signal transducing domain derived from a
cytokine receptor, such that, upon zation, the CAR may represent a heterodimeric—
signalobody CAR, e. g., a signalobody composed of at least two independent polypeptides.
A “signalobody”, as it is known in the art, is a single chimeric macromolecule composed of
an antibody fragment and a signal uction domain derived from a cytokine receptor. In
n instances, a heterodimeric—signalobody CAR of the present disclosure, when present
in the cell membrane of a otic cell, dimerized by a dimerizer, and ted by an
antigen, e. g., an oligomerized antigen, may induce the oligomerization of the dimeric—
signalobody CAR. Such ligand—induced oligomerization of a heterodimeric—signalobody
CAR may activate, e. g., increase, or perpetuate, e. g., maintain, signal transduction, e.g.,
ligand—induced oligomerization of a heterodimeric—signalobody CAR may transmit a signal
eliciting a cellular response. In some instances, a ity of dimeric—signalobody
CARs may be utilized combinatorially to elicit a desired cellular response.
Member of a specific binding pair
A CAR of the present disclosure includes a member of a specific binding pair. Specific
binding pairs include, but are not limited to, antigen—antibody binding pairs; ligand—receptor
binding pairs; and the like. Thus, a member of a specific binding pair suitable for use in a
CAR of the present disclosure includes an n; an antibody; a ligand; and a ligand—
binding receptor.
Antigen-binding domain
An antigen—binding domain suitable for use in a CAR of the present disclosure can be any
antigen—binding polypeptide, a wide variety of which are known in the art. In some
instances, the antigen—binding domain is a single chain Fv . Other antibody based
recognition domains (cAb VHH (camelid antibody variable domains) and humanized
versions, IgNAR VH (shark antibody variable domains) and humanized versions, sdAb VH
(single domain antibody variable domains) and “camelized” antibody variable s are
suitable for use. In some instances, T—cell receptor (TCR) based recognition domains such
as single chain TCR (sch, single chain two—domain TCR containing VOLVB) are also
suitable for use.
An antigen—binding domain suitable for use in a CAR of the present disclosure can have a
variety of n—binding specificities. In some cases, the n—binding domain is
specific for an epitope present in an antigen that is expressed by (synthesized by) a cancer
cell, i.e., a cancer cell associated n. The cancer cell ated antigen can be an
antigen associated with, e. g., a breast cancer cell, a B cell ma, a Hodgkin lymphoma
cell, an n cancer cell, a prostate cancer cell, a mesothelioma, a lung cancer cell (e. g., a
small cell lung cancer cell), a non—Hodgkin B—cell lymphoma (B—NHL) cell, an ovarian
cancer cell, a prostate cancer cell, a mesothelioma cell, a lung cancer cell (e.g., a small cell
lung cancer cell), a melanoma cell, a chronic lymphocytic leukemia cell, an acute
lymphocytic leukemia cell, a neuroblastoma cell, a glioma, a glioblastoma, a
medulloblastoma, a colorectal cancer cell, etc. A cancer cell associated antigen may also be
expressed by a non—cancerous cell.
Non—limiting examples of antigens to which an antigen—binding domain of a subject CAR
can bind include, e.g., CD19, CD20, CD38, CD30, Her2/neu, ERBBZ, CA125, MUC—l,
prostate—specific membrane antigen (PSMA), CD44 surface adhesion molecule, mesothelin,
carcinoembryonic antigen (CEA), epidermal growth factor receptor (EGFR), EGFRvIII,
ar endothelial growth factor receptor—2 (VEGFRZ), high molecular weight—melanoma
ated antigen (HMW—MAA), MAGE—Al, IL—l3R—a2, GD2, and the like.
Ligand
In some cases, a member of a specific binding pair suitable for use in a subject CAR is a
ligand for a receptor. Ligands include, but are not limited to, cytokines (e. g., IL—l3, etc.);
growth factors (e. g., heregulin; vascular endothelial growth factor (VEGF); and the like); an
integrin—binding peptide (e. g., a peptide comprising the sequence Arg—Gly—Asp); and the
like.
Where the member of a specific g pair in a subject CAR is a ligand, the CAR can be
activated in the presence of both a dimerizer agent and a second member of the specific
binding pair, where the second member of the specific binding pair is a receptor for the
ligand. For e, where the ligand is VEGF, the second member of the specific binding
pair can be a VEGF receptor, including a e VEGF receptor. As another example,
where the ligand is heregulin, the second member of the specific binding pair can be Her2.
Receptors
As noted above, in some cases, the member of a specific g pair that is included in a
t CAR is a or, e. g., a receptor for a ligand, a co—receptor, etc. The receptor can
be a —binding fragment of a receptor. Suitable receptors include, but are not limited to,
a growth factor receptor (e.g., a VEGF receptor); a killer cell lectin—like receptor subfamily
K, member 1 (NKG2D) polypeptide (receptor for MICA, MICB, and ULB6); a ne
receptor (e. g., an IL—13 receptor; an IL—2 receptor; etc.); Her2; CD27; a natural cytotoxicity
receptor (NCR) (e. g., NKP30 (NCR3/CD337) ptide (receptor for HLA—B—associated
transcript 3 (BAT3) and B7—H6); etc.); etc.
Hinge region
In some cases, the first polypeptide of a subject CAR comprises a hinge region (also
referred to herein as a “spacer”), where the hinge region is interposed between the antigen—
binding domain and the transmembrane domain. In some cases, the hinge region is an
immunoglobulin heavy chain hinge region. In some cases, the hinge region is a hinge region
polypeptide derived from a receptor (e. g., a CD8—derived hinge region).
The hinge region can have a length of from about 4 amino acids to about 50 amino acids,
e.g., from about 4 aa to about 10 aa, from about 10 aa to about 15 aa, from about 15 aa to
about 20 aa, from about 20 aa to about 25 aa, from about 25 aa to about 30 aa, from about
aa to about 40 aa, or from about 40 aa to about 50 aa.
Suitable spacers can be readily selected and can be of any of a number of suitable lengths,
such as from 1 amino acid (e. g., Gly) to 20 amino acids, from 2 amino acids to 15 amino
acids, from 3 amino acids to 12 amino acids, including 4 amino acids to 10 amino acids, 5
amino acids to 9 amino acids, 6 amino acids to 8 amino acids, or 7 amino acids to 8 amino
acids, and can be 1, 2, 3, 4, 5, 6, or 7 amino acids.
Exemplary spacers include glycine polymers (G)n, glycine—serine polymers (including, for
example, (GS)n, (GSGGS)Il (SEQ ID NO:37) and (GGGS)Il (SEQ ID , where n is an
integer of at least one), glycine—alanine polymers, alanine—serine polymers, and other
flexible linkers known in the art. Glycine and glycine—serine polymers can be used; both Gly
and Ser are relatively unstructured, and therefore can serve as a neutral tether between
components. Glycine polymers can be used; glycine es significantly more phi—psi
space than even alanine, and is much less restricted than residues with longer side chains
(see Scheraga, Rev. ational Chem. 11173—142 ). ary spacers can
comprise amino acid sequences including, but not limited to, GGSG (SEQ ID NO:39),
GGSGG (SEQ ID NO:40), GSGSG (SEQ ID NO:41), GSGGG (SEQ ID , GGGSG
(SEQ ID NO:43), GSSSG (SEQ ID NO:44), and the like.
In some cases, the hinge region in the first polypeptide of a subject CAR includes at least
one ne. For example, in some cases, the hinge region can include the sequence Cys—
o—Cys. If present, a cysteine in the hinge region of a first CAR can be available to
form a disulfide bond with a hinge region in a second CAR.
Irnmunoglobulin hinge region amino acid sequences are known in the art; see, e. g., Tan et
al. (1990) Proc. Natl. Acad. Sci. USA 87:162; and Huck et al. (1986) Nucl. Acids Res.
14: 1779. As non—limiting examples, an immunoglobulin hinge region can include one of the
following amino acid sequences: DKTHT (SEQ ID NO:45); CPPC (SEQ ID NO:46);
CDTPPPCPR (SEQ ID NO:47) (see, e. g., Glaser et al. (2005) J. Biol. Chem.
280:41494); ELKTPLGDTTHT (SEQ ID NO:48); KSCDKTHTCP (SEQ ID NO:49);
P (SEQ ID NO:50); KYGPPCP (SEQ ID NO:51); EPKSCDKTHTCPPCP (SEQ
ID NO:52) (human IgGl hinge); ERKCCVECPPCP (SEQ ID NO:53) (human IgG2 hinge);
GDTTHTCPRCP (SEQ ID NO:54) (human IgG3 hinge); SPNMVPHAHHAQ
(SEQ ID NO:55) (human IgG4 hinge); and the like.
The hinge region can comprise an amino acid sequence of a human IgGl, IgG2, IgG3, or
IgG4, hinge region. The hinge region can e one or more amino acid substitutions
and/or insertions and/or deletions compared to a wild—type (naturally—occurring) hinge
region. For example, H18229 of human IgGl hinge can be substituted with Tyr, so that the
hinge region comprises the sequence EPKSCDKTYTCPPCP (SEQ ID NO:52); see, e. g.,
Yan et al. (2012) J. Biol. Chem. 287:5891.
The hinge region can comprise an amino acid sequence derived from human CD8; e. g., the
hinge region can comprise the amino acid sequence:
TTTPAPRPPTPAPTIASQPLSLRPEACRPAAGGAVHTRGLDFACD (SEQ ID NO:56),
or a variant thereof.
Transmembrane domain
The first and the second polypeptides of a CAR of the present disclosure include
transmembrane domains for insertion into a eukaryotic cell membrane. The transmembrane
domain of the first polypeptide is interposed between the antigen—binding domain and the
co—stimulatory domain. Where the first polypeptide includes a hinge region, the
transmembrane domain is interposed between the hinge region and the co—stimulatory
domain, such that the first ptide comprises, in order from the amino us (N—
terrninus) to the carboxyl terminus (C—terminus): an antigen—binding domain; a hinge
region; a transmembrane domain; a first co—stimulatory domain; and a first member of a
dimerizer—binding pair.
The transmembrane domain of the second polypeptide is at or near the N—terminus of the
polypeptide, such that the second polypeptide comprises, in order from N—terminus to C—
terrninus: a transmembrane domain; a second co—stimulatory domain; a second member of
the dimerizer—binding pair; and an intracellular signaling domain.
Any transmembrane (TM) domain that provides for insertion of a polypeptide into the cell
membrane of a eukaryotic (e. g., mammalian) cell is suitable for use. As one non—limiting
example, the TM sequence IYIWAPLAGTCGVLLLSLVITLYC (SEQ ID NO:30) can be
used. Additional non—limiting examples of suitable TM sequences include: a) CD8 beta
derived : LGLLVAGVLVLLVSLGVAIHLCC (SEQ ID NO:57); b) CD4 derived:
ALIVLGGVAGLLLFIGLGIFFCVRC (SEQ ID NO:58); c) CD3 zeta derived:
GILFIYGVILTALFLRV (SEQ ID ; d) CD28 derived:
WVLVVVGGVLACYSLLVTVAFIIFWV (SEQ ID NO:60); e) CD134 (0X40) derived:
VAAILGLGLVLGLLGPLAILLALYLL (SEQ ID ; and f) CD7 derived:
ALPAALAVISFLLGLGLGVACVLA (SEQ ID NO:62).
Linkers
In some cases, a first polypeptide of a subject CAR includes a linker between any two
adjacent domains. For example, a linker can be disposed between the transmembrane
domain and the first co—stimulatory domain of the first polypeptide. As another example, a
linker can be disposed between the first co—stimulatory domain and the first member of a
dimerizer—binding pair of the first polypeptide. As another example, a linker can be disposed
n the embrane domain and the second co—stimulatory domain of the second
polypeptide. As r e, a linker can be disposed between the second co—
stimulatory domain and the second member of the dimerizer—binding pair of the second
polypeptide. As another example, a linker can be disposed n the second member of
the dimerizer—binding pair and the intracellular signaling domain of the second polypeptide.
The linker peptide may have any of a variety of amino acid sequences. Proteins can be
joined by a spacer e, generally of a flexible nature, although other chemical linkages
are not excluded. A linker can be a peptide of between about 6 and about 40 amino acids in
, or between about 6 and about 25 amino acids in length. These linkers can be
produced by using synthetic, linker—encoding oligonucleotides to couple the ns.
Peptide linkers with a degree of flexibility can be used. The linking peptides may have
lly any amino acid sequence, bearing in mind that suitable linkers will have a
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sequence that results in a generally flexible peptide. The use of small amino acids, such as
glycine and alanine, are of use in creating a flexible peptide. The creation of such ces
is routine to those of skill in the art.
Suitable linkers can be y selected and can be of any of a le of different s,
such as from 1 amino acid (e. g., Gly) to 20 amino acids, from 2 amino acids to 15 amino
acids, from 3 amino acids to 12 amino acids, including 4 amino acids to 10 amino acids, 5
amino acids to 9 amino acids, 6 amino acids to 8 amino acids, or 7 amino acids to 8 amino
acids, and may be 1, 2, 3, 4, 5, 6, or 7 amino acids.
Exemplary flexible linkers include glycine polymers (G)n, glycine—serine polymers
ding, for example, (GS)n, GSGGSIl (SEQ ID NO:37) and GGGSIl (SEQ ID NO:38),
where n is an integer of at least one), glycine—alanine polymers, e—serine polymers,
and other flexible linkers known in the art. Glycine and e—serine polymers are of
interest since both of these amino acids are relatively unstructured, and therefore may serve
as a neutral tether between components. Glycine polymers are of particular st since
glycine accesses significantly more phi—psi space than even alanine, and is much less
restricted than residues with longer side chains (see Scheraga, Rev. Computational Chem.
lll73—l42 (1992)). Exemplary flexible linkers include, but are not limited GGSG (SEQ ID
NO:39), GGSGG (SEQ ID NO:40), GSGSG (SEQ ID NO:4l), GSGGG (SEQ ID NO:42),
GGGSG (SEQ ID NO:43), GSSSG (SEQ ID NO:44), and the like. The ordinarily skilled
artisan will recognize that design of a peptide conjugated to any elements described above
can include linkers that are all or partially flexible, such that the linker can include a flexible
linker as well as one or more portions that confer less flexible structure.
Modulatory s
Modulatory domains suitable for use in a CAR of the present disclosure include co—
stimulatory domains.
In some cases, the modulatory domain on the first polypeptide of a subject CAR has
substantially the same amino acid sequence as the tory domain on the second
polypeptide of the CAR. For example, in some cases, the tory domain on the first
polypeptide of a CAR ses an amino acid sequence that is at least about 90%, at least
about 95%, at least about 98%, at least about 99%, or 100%, identical to the amino acid
sequence of the modulatory domain on the second polypeptide of the CAR. The modulatory
domain of the first polypeptide of a subject CAR can have substantially the same length as
the modulatory domain of the second polypeptide of a subject CAR; e. g., the first and
second modulatory domains can differ in length from one another by fewer than 10 amino
acids, or fewer than 5 amino acids. In some cases, the first and second modulatory domains
have the same length.
A modulatory domain suitable for inclusion in the first and the second polypeptide
of a subject CAR can have a length of from about 30 amino acids to about 70 amino acids
(aa), e.g., a modulatory domain can have a length of from about 30 aa to about 35 aa, from
about 35 aa to about 40 aa, from about 40 aa to about 45 aa, from about 45 aa to about 50
aa, from about 50 aa to about 55 aa, from about 55 aa to about 60 aa, from about 60 aa to
about 65 aa, or from about 65 aa to about 70 aa. In other cases, modulatory domain can have
a length of from about 70 aa to about 100 aa, from about 100 aa to about 200 aa, or greater
than 200 aa.
Co—stimulatory domains suitable for use in a CAR of the t disclosure are
generally ptides derived from receptors. In some embodiments, co—stimulatory
domains homodimerize. A t co—stimulatory domain can be an intracellular portion of
a transmembrane protein (i.e., the mulatory domain can be derived from a
transmembrane protein). Non—limiting examples of suitable co—stimulatory polypeptides
e, but are not limited to, 4—lBB (CD137), CD28, ICOS, OX—40, BTLA, CD27, CD30,
GITR, and HVEM.
In some cases, the co—stimulatory domain on the first polypeptide of a t CAR
has substantially the same amino acid sequence as the co—stimulatory domain on the second
polypeptide of the CAR. For e, in some cases, the co—stimulatory domain on the first
polypeptide of a CAR comprises an amino acid sequence that is at least about 90%, at least
about 95%, at least about 98%, at least about 99%, or 100%, identical to the amino acid
ce of the co—stimulatory domain on the second polypeptide of the CAR. The co—
stimulatory domain of the first polypeptide of a subject CAR can have substantially the
same length as the co—stimulatory domain of the second polypeptide of a subject CAR; e.g.,
the first and second co—stimulatory domains can differ in length from one another by fewer
than 10 amino acids, or fewer than 5 amino acids. In some cases, the first and second co—
stimulatory domains have the same length.
A co—stimulatory domain suitable for inclusion in the first and the second
polypeptide of a subject CAR can have a length of from about 30 amino acids to about 70
amino acids (aa), e. g., a co—stimulatory domain can have a length of from about 30 aa to
about 35 aa, from about 35 aa to about 40 aa, from about 40 aa to about 45 aa, from about
45 aa to about 50 aa, from about 50 aa to about 55 aa, from about 55 aa to about 60 aa, from
about 60 aa to about 65 aa, or from about 65 aa to about 70 aa. In other cases, the co—
WO 27261
stimulatory domain can have a length of from about 70 aa to about 100 aa, from about 100
aa to about 200 aa, or greater than 200 aa.
In some cases, the co—stimulatory domain is derived from an intracellular portion of
the transmembrane protein 4—lBB (also known as TNFRSF9; CDl37; 4—lBB; Cle37;
ILA; etc.). For example, a suitable co—stimulatory domain can comprise an amino acid
sequence having at least about 75%, at least about 80%, at least about 85%, at least about
90%, at least about 95%, at least about 98%, or 100% amino acid sequence identity to the
following amino acid sequence:
KRGRKKLLYIFKQPFMRPVQTTQEEDGCSCRFPEEEEGGCEL (SEQ ID NO:24). In
some of these embodiments, the co—stimulatory domain of both the first and the second
polypeptide has a length of from about 30 aa to about 35 aa, from about 35 aa to about 40
aa, from about 40 aa to about 45 aa, from about 45 aa to about 50 aa, from about 50 aa to
about 55 aa, from about 55 aa to about 60 aa, from about 60 aa to about 65 aa, or from about
65 aa to about 70 aa.
In some cases, the co—stimulatory domain is derived from an intracellular portion of
the transmembrane protein CD28 (also known as Tp44). For example, a suitable co—
stimulatory domain can comprise an amino acid sequence having at least about 75%, at least
about 80%, at least about 85%, at least about 90%, at least about 95%, at least about 98%,
or 100% amino acid ce identity to the following amino acid sequence:
RSRLLHSDYMNMTPRRPGPTRKHYQPYAPPRDFAAYRS (SEQ ID NO:63).
In some of these embodiments, the co—stimulatory domain of both the first and the second
polypeptide has a length of from about 30 aa to about 35 aa, from about 35 aa to about 40
aa, from about 40 aa to about 45 aa, from about 45 aa to about 50 aa, from about 50 aa to
about 55 aa, from about 55 aa to about 60 aa, from about 60 aa to about 65 aa, or from about
65 aa to about 70 aa.
In some cases, the co—stimulatory domain is derived from an intracellular portion of
the embrane protein ICOS (also known as AILIM, CD278, and CVIDl). For
example, a suitable co—stimulatory domain can comprise an amino acid sequence having at
least about 75%, at least about 80%, at least about 85%, at least about 90%, at least about
95%, at least about 98%, or 100% amino acid sequence ty to the following amino acid
TKKKYSSSVHDPNGEYMFMRAVNTAKKSRLTDVTL (SEQ ID NO:64). In some of
these embodiments, the co—stimulatory domain of both the first and the second polypeptide
has a length of from about 30 aa to about 35 aa, from about 35 aa to about 40 aa, from about
40 aa to about 45 aa, from about 45 aa to about 50 aa, from about 50 aa to about 55 aa, from
about 55 aa to about 60 aa, from about 60 aa to about 65 aa, or from about 65 aa to about 70
In some cases, the co—stimulatory domain is derived from an intracellular portion of
the transmembrane protein OX—40 (also known as TNFRSF4, RP5—902P8.3, ACT35,
CDl34, 0X40, TXGPlL). For example, a suitable co—stimulatory domain can comprise an
amino acid sequence having at least about 75%, at least about 80%, at least about 85%, at
least about 90%, at least about 95%, at least about 98%, or 100% amino acid ce
identity to the following amino acid sequence:
RRDQRLPPDAHKPPGGGSFRTPIQEEQADAHSTLAKI (SEQ ID NO:65). In some of
these ments, the co—stimulatory domain of both the first and the second polypeptide
has a length of from about 30 aa to about 35 aa, from about 35 aa to about 40 aa, from about
40 aa to about 45 aa, from about 45 aa to about 50 aa, from about 50 aa to about 55 aa, from
about 55 aa to about 60 aa, from about 60 aa to about 65 aa, or from about 65 aa to about 70
In some cases, the co—stimulatory domain is derived from an intracellular portion of
the transmembrane protein BTLA (also known as BTLAl and . For example, a
suitable co—stimulatory domain can comprise an amino acid sequence having at least about
75%, at least about 80%, at least about 85%, at least about 90%, at least about 95%, at least
about 98%, or 100% amino acid sequence identity to the following amino acid ce:
CCLRRHQGKQNELSDTAGREINLVDAHLKSEQTEASTRQNSQVLLSETGIYDNDPD
LCFRMQEGSEVYSNPCLEENKPGIVYASLNHSVIGPNSRLARNVKEAPTEYASICVR
S (SEQ ID NO:66).
In some cases, the co—stimulatory domain is derived from an intracellular portion of
the transmembrane protein CD27 (also known as S 152, Tl4, TNFRSF7, and Tp55). For
example, a suitable co—stimulatory domain can comprise an amino acid ce having at
least about 75%, at least about 80%, at least about 85%, at least about 90%, at least about
95%, at least about 98%, or 100% amino acid sequence identity to the following amino acid
HQRRKYRSNKGESPVEPAEPCRYSCPREEEGSTIPIQEDYRKPEPACSP (SEQ ID
NO:67). In some of these embodiments, the co—stimulatory domain of both the first and the
second polypeptide has a length of from about 30 aa to about 35 aa, from about 35 aa to
about 40 aa, from about 40 aa to about 45 aa, from about 45 aa to about 50 aa, from about
50 aa to about 55 aa, from about 55 aa to about 60 aa, from about 60 aa to about 65 aa, or
from about 65 aa to about 70 aa.
In some cases, the co—stimulatory domain is derived from an intracellular portion of
the transmembrane protein CD30 (also known as 8, DlSl66E, and Ki—l). For
example, a suitable co—stimulatory domain can comprise an amino acid sequence having at
least about 75%, at least about 80%, at least about 85%, at least about 90%, at least about
95%, at least about 98%, or 100% amino acid sequence identity to a contiguous stretch of
from about 100 amino acids to about 110 amino acids (aa), from about 110 aa to about 115
aa, from about 115 aa to about 120 aa, from about 120 aa to about 130 aa, from about 130
aa to about 140 aa, from about 140 aa to about 150 aa, from about 150 aa to about 160 aa, or
from about 160 aa to about 185 aa of the following amino acid sequence:
RIRQKLHLCYPVQTSQPKLELVDSRPRRSSTQLRSGASVTEPVAEERGLMS
QPLMETCHSVGAAYLESLPLQDASPAGGPSSPRDLPEPRVSTEHTNNKIEKIYIMKA
DTVIVGTVKAELPEGRGLAGPAEPELEEELEADHTPHYPEQETEPPLGSCSDVMLSV
EEEGKEDPLPTAASGK (SEQ ID NO:68).
In some cases, the co—stimulatory domain is derived from an ellular portion of
the transmembrane protein GITR (also known as TNFRSFl8, RP5—902P8.2, AITR, CD357,
and GITR—D). For example, a suitable co—stimulatory domain can comprise an amino acid
sequence having at least about 75%, at least about 80%, at least about 85%, at least about
90%, at least about 95%, at least about 98%, or 100% amino acid sequence identity to the
following amino acid sequence:
HIWQLRSQCMWPRETQLLLEVPPSTEDARSCQFPEEERGERSAEEKGRLGDLWV
(SEQ ID NO:69). In some of these embodiments, the co—stimulatory domain of both the
first and the second polypeptide has a length of from about 30 aa to about 35 aa, from about
aa to about 40 aa, from about 40 aa to about 45 aa, from about 45 aa to about 50 aa, from
about 50 aa to about 55 aa, from about 55 aa to about 60 aa, from about 60 aa to about 65
aa, or from about 65 aa to about 70 aa.
In some cases, the co—stimulatory domain derived from an intracellular portion of the
transmembrane protein HVEM (also known as TNFRSFl4, RP3—395M20.6, ATAR,
CD270, HVEA, HVEM, LIGHTR, and TR2). For example, a suitable co—stimulatory
domain can comprise an amino acid sequence having at least about 75%, at least about 80%,
at least about 85%, at least about 90%, at least about 95%, at least about 98%, or 100%
amino acid ce identity to the ing amino acid ce:
CVKRRKPRGDVVKVIVSVQRKRQEAEGEATVIEALQAPPDVTTVAVEETIPSFTGRS
PNH (SEQ ID NO:70). In some of these embodiments, the co—stimulatory domain of both
the first and the second polypeptide has a length of from about 30 aa to about 35 aa, from
about 35 aa to about 40 aa, from about 40 aa to about 45 aa, from about 45 aa to about 50
aa, from about 50 aa to about 55 aa, from about 55 aa to about 60 aa, from about 60 aa to
about 65 aa, or from about 65 aa to about 70 aa.
Dimer pairs
Dimer pairs suitable for use in a subject CAR include dimerizer—binding pairs.
Dimerizer—binding pairs suitable for use in a CAR of the present disclosure are in some
embodiments polypeptides that bind to a different site of the same molecule (referred to
herein as a “dimerizer”). In the presence of a dimerizer, both members of the dimerizer—
binding pair bind to a different site of the dimerizer and are thus t into ity
with one another. In some ments, binding to the dimerizer is reversible. In some
embodiments, g to the zer is irreversible. In some embodiments, binding to the
dimerizer is non—covalent. In some embodiments, binding to the dimerizer is nt.
Other dimer pairs suitable for use e dimerizer—binding pairs that ze upon
binding of a first member of a dimer pair to a dimerizing agent, where the dimerizing agent
induces a conformational change in the first member of the dimer pair, and where the
conformational change allows the first member of the dimer pair to bind ently or non—
covalently) to a second member of the dimer pair.
Other dimer pairs suitable for use include dimer pairs in which exposure to light
(e. g., blue light) induces dimerization of the dimer pair.
Regardless of the mechanism, the dimer pair will dimerize upon exposure to an
agent that induces dimerization, where the agent is in some cases a small molecule, or, in
other cases, light. Thus, for simplicity, the discussion below referring to “dimerizer—binding
pairs” includes dimer pairs that dimerize regardless of the mechanism.
Non—limiting examples of suitable dimers (e. g., dimerizer—binding pairs) include, but
are not limited to:
a) FK506 binding protein (FKBP) and FKBP;
b) FKBP and calcineurin tic subunit A (CnA);
c) FKBP and cyclophilin;
d) FKBP and FKBP—rapamycin associated protein (FRB);
e) gyrase B (GyrB) and GyrB;
f) dihydrofolate reductase (DHFR) and DHFR;
g) DmrB and DmrB;
2014/016527
h) PYL and ABI;
i) Cry2 and CIBl; and
j) GAI and GIDl.
A first or a second member of a dimer (e.g., a dimerizer—binding pair) of a subject
CAR can have a length of from about 50 amino acids to about 300 amino acids or more;
e. g., a first or a second member of a dimer (e.g., a dimerizer—binding pair) of a subject CAR
can have a length of from about 50 aa to about 100 aa, from about 100 aa to about 150 aa,
from about 150 aa to about 200 aa, from about 200 aa toa bout 250 aa, from about 250 aa to
about 300 aa, or more than 300 aa.
In some cases, a member of a dimer (e.g., a dimerizer—binding pair) of a subject
CAR is derived from FKBP. For example, a suitable zer—binding pair member can
comprise an amino acid sequence having at least about 75%, at least about 80%, at least
about 85%, at least about 90%, at least about 95%, at least about 98%, or 100% amino acid
sequence identity to the following amino acid sequence:
MGVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQE
VIRGWEEGVAQMSVGQRAKLTISPDYAYGATGHPGIIPPHATLVFDVELLKLE (SEQ
ID NO: 12).
In some cases, a member of a dimerizer—binding pair of a subject CAR is derived
from calcineurin catalytic subunit A (also known as PPP3CA; CALN; CALNA; CALNAl;
CCNl; CNAl; PPP2B; CAM—PRP catalytic subunit; calcineurin A alpha; calmodulin—
dependent calcineurin A subunit alpha isoform; protein phosphatase 2B, catalytic subunit,
alpha isoform; etc.). For e, a suitable dimerizer—binding pair member can comprise
an amino acid sequence having at least about 75%, at least about 80%, at least about 85%,
at least about 90%, at least about 95%, at least about 98%, or 100% amino acid sequence
identity to the following amino acid sequence (PP2Ac domain):
LRIITEGASILRQEKNLLDIDAPVTVCGDIHGQFFDLMKLFEVGGSPANTRY
VDRGYFSIECVLYLWALKILYPKTLFLLRGNHECRHLTEYFTFKQECKIKY
SERVYDACMDAFDCLPLAALMNQQFLCVHGGLSPEINTLDDIRKLDRFKEPPAYGP
SDPLEDFGNEKTQEHFTHNTVRGCSYFYSYPAVCEFLQHNNLLSILRAHE
AQDAGYRMYRKSQTTGFPSLITIFSAPNYLDVYNNKAAVLKYENNVMNIRQFNCSP
HPYWLPNFM (SEQ ID NO:7l).
In some cases, a member of a dimer (e.g., a dimerizer—binding pair) is derived from
cyclophilin (also known cyclophilin A, PPIA, CYPA, CYPH, PPIase A, etc.). For example,
a suitable dimerizer—binding pair member can se an amino acid sequence having at
least about 75%, at least about 80%, at least about 85%, at least about 90%, at least about
95%, at least about 98%, or 100% amino acid sequence identity to the following amino acid
sequence:
MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRII
PGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFI
CTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQLE (SEQ
ID NO:72).
In some cases, a member of a dimer (e.g., a dimerizer—binding pair) is derived from
MTOR (also known as FKBP—rapamycin associated protein; FK506 binding protein 12—
cin associated protein 1; FK506 binding protein 12—rapamycin associated protein 2;
FK506—binding protein 12—rapamycin x—associated n 1; FRAP; FRAPl;
FRAPZ; RAFTl; and RAPTl). For example, a suitable dimerizer—binding pair member can
comprise an amino acid sequence haVing at least about 75%, at least about 80%, at least
about 85%, at least about 90%, at least about 95%, at least about 98%, or 100% amino acid
sequence identity to the following amino acid sequence (also known as “Frb”: Fkbp—
Rapamycin g Domain):
MILWHEMWHEGLEEASRLYFGERNVKGMFEVLEPLHAMMERGPQTLKETSFNQA
YGRDLMEAQEWCRKYMKSGNVKDLLQAWDLYYHVFRRISK (SEQ ID NO: 14).
In some cases, a member of a dimer (e.g., a dimerizer—binding pair) is derived from
GyrB (also known as DNA gyrase subunit B). For example, a suitable dimerizer—binding
pair member can comprise an amino acid sequence haVing at least about 75%, at least about
80%, at least about 85%, at least about 90%, at least about 95%, at least about 98%, or
100% amino acid sequence identity to a contiguous h of from about 100 amino acids
to about 200 amino acids (aa), from about 200 aa to about 300 aa, from about 300 aa to
about 400 aa, from about 400 aa to about 500 aa, from about 500 aa to about 600 aa, from
about 600 aa to about 700 aa, or from about 700 aa to about 800 aa, of the following GyrB
amino acid sequence from Escherichia coli (or to the DNA gyrase subunit B sequence from
any organism):
MSNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGH
CKEIIVTIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVS
GGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMV
ETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAF
VEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHL
AGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQT
KDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREM
TRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPL
KGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDG
LLTFFYRQMPEIVERGHVYIAQPPLYKVKKGKQEQYIKDDEAMDQYQISIA
LDGATLHTNASAPALAGEALEKLVSEYNATQKMINRMERRYPKAMLKELIYQPTL
TEADLSDEQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQNLFEPIVRVRTHG
VDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAFIERGERRQPVASFEQALDWLV
KESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTTLMG
DAVEPRRAFIEENALKAANIDI (SEQ ID NO:73). In some cases, a member of a
dimerizer—binding pair ses an amino acid sequence having at least about 75%, at least
about 80%, at least about 85%, at least about 90%, at least about 95%, at least about 98%,
or 100% amino acid sequence identity to amino acids 1—220 of the above—listed GyrB amino
acid sequence from Escherichia coli.
In some cases, a member of a dimer (e.g., a dimerizer—binding pair) is derived from
DHFR (also known as dihydrofolate reductase, DHFRPl, and DYR). For example, a
suitable dimerizer—binding pair member can comprise an amino acid sequence having at
least about 75%, at least about 80%, at least about 85%, at least about 90%, at least about
95%, at least about 98%, or 100% amino acid sequence identity to the following amino acid
sequence:
MVGSLNCIVAVSQNMGIGKNGDLPWPPLRNEFRYFQRMTTTSSVEGKQNLVIMGK
KTWFSIPEKNRPLKGRINLVLSRELKEPPQGAHFLSRSLDDALKLTEQPELANKVDM
VWIVGGSSVYKEAMNHPGHLKLFVTRIMQDFESDTFFPEIDLEKYKLLPEYPGVLS
DVQEEKGIKYKFEVYEKND (SEQ ID NO:74).
] In some cases, a member of a dimer (e.g., a dimerizer—binding pair) is derived from
the DmrB binding domain (i.e., DmrB homodimerization domain). For e, a le
dimerizer—binding pair member can comprise an amino acid sequence having at least about
75%, at least about 80%, at least about 85%, at least about 90%, at least about 95%, at least
about 98%, or 100% amino acid sequence identity to the following amino acid sequence:
QVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKVDSSRDRNKPFKFMLG
KQEVIRGWEEGVAQMSVGQRAKLTISPDYAYGATGHPGIIPPHATLVFDVELLKLE
(SEQ ID .
In some cases, a member of a dimer (e.g., a dimerizer—binding pair) is derived from a
PYL protein (also known as abscisic acid receptor and as RCAR). For example a member of
a subject dimerizer—binding pair can be derived from proteins such as those of Arabidopsis
thaliana: PYRl, RCAR1(PYL9), PYLl, PYL2, PYL3, PYL4, PYL5, PYL6, PYL7, PYL8
(RCAR3), PYL10, PYLl 1, PYL12, PYL13. For example, a suitable dimerizer—binding pair
member can comprise an amino acid sequence having at least about 75%, at least about
80%, at least about 85%, at least about 90%, at least about 95%, at least about 98%, or
100% amino acid sequence identity to any of the following amino acid ces:
PYL10:
MNGDETKKVESEYIKKHHRHELVESQCSSTLVKHIKAPLHLVWSIVRRFDEPQKYK
PFISRCVVQGKKLEVGSVREVDLKSGLPATKSTEVLEILDDNEHILGIRIVGGDHRLK
NYSSTISLHSETIDGKTGTLAIESFVVDVPEGNTKEETCFFVEALIQCNLNSLADVTE
RLQAESMEKKI (SEQ ID NO:76).
PYLl 1:
METSQKYHTCGSTLVQTIDAPLSLVWSILRRFDNPQAYKQFVKTCNLSSGDGGEGS
VREVTVVSGLPAEFSRERLDELDDESHVMMISIIGGDHRLVNYRSKTMAFVAADTE
ESYVVDVPEGNSEEETTSFADTIVGFNLKSLAKLSERVAHLKL (SEQ ID
NO:77)
PYL12:
MKTSQEQHVCGSTVVQTINAPLPLVWSILRRFDNPKTFKHFVKTCKLRSGDGGEGS
VREVTVVSDLPASFSLERLDELDDESHVMVISIIGGDHRLVNYQSKTTVFVAAEEEK
TVVVESYVVDVPEGNTEEETTLFADTIVGCNLRSLAKLSEKMMELT (SEQ ID
NO:78).
PYL13:
MESSKQKRCRSSVVETIEAPLPLVWSILRSFDKPQAYQRFVKSCTMRSGGGGGKGG
EGKGSVRDVTLVSGFPADFSTERLEELDDESHVMVVSIIGGNHRLVNYKSKTKVVA
KKTVVVESYVVDVPEGTSEEDTIFFVDNIIRYNLTSLAKLTKKMMK (SEQ
ID NO:79).
PYL1:
MANSESSSSPVNEEENSQRISTLHHQTMPSDLTQDEFTQLSQSIAEFHTYQLGNGRC
SSLLAQRIHAPPETVWSVVRRFDRPQIYKHFIKSCNVSEDFEMRVGCTRDVNVISGL
PANTSRERLDLLDDDRRVTGFSITGGEHRLRNYKSVTTVHRFEKEEEEERIWTVVLE
SYVVDVPEGNSEEDTRLFADTVIRLNLQKLASITEAMNRNNNNNNSSQVR (SEQ ID
PYL2:
MSSSPAVKGLTDEEQKTLEPVIKTYHQFEPDPTTCTSLITQRIHAPASVVWPLIRRFD
NPERYKHFVKRCRLISGDGDVGSVREVTVISGLPASTSTERLEFVDDDHRVLSFRVV
GGEHRLKNYKSVTSVNEFLNQDSGKVYTVVLESYTVDIPEGNTEEDTKMFVDTVV
KLNLQKLGVAATSAPMHDDE (SEQ ID N081).
PYL3:
MNLAPIHDPSSSSTTTTSSSTPYGLTKDEFSTLDSIIRTHHTFPRSPNTCTSLIAHRVDA
PAHAIWRFVRDFANPNKYKHFIKSCTIRVNGNGIKEIKVGTIREVSVVSGLPASTSVE
ILEVLDEEKRILSFRVLGGEHRLNNYRSVTSVNEFVVLEKDKKKRVYSVVLESYIVD
IPQGNTEEDTRMFVDTVVKSNLQNLAVISTASPT (SEQ ID N082).
PYL4:
MLAVHRPSSAVSDGDSVQIPMMIASFQKRFPSLSRDSTAARFHTHEVGPNQCCSAVI
QEISAPISTVWSVVRRFDNPQAYKHFLKSCSVIGGDGDNVGSLRQVHVVSGLPAAS
STERLDILDDERHVISFSVVGGDHRLSNYRSVTTLHPSPISGTVVVESYVVDVPPGNT
FVDVIVRCNLQSLAKIAENTAAESKKKMSL (SEQ ID NO:83).
PYLS:
MRSPVQLQHGSDATNGFHTLQPHDQTDGPIKRVCLTRGMHVPEHVAMHHTHDVG
PDQCCSSVVQMIHAPPESVWALVRRFDNPKVYKNFIRQCRIVQGDGLHVGDLREV
MVVSGLPAVSSTERLEILDEERHVISFSVVGGDHRLKNYRSVTTLHASDDEGTVVV
ESYIVDVPPGNTEEETLSFVDTIVRCNLQSLARSTNRQ (SEQ ID N084).
PYL6:
MPTSIQFQRSSTAAEAANATVRNYPHHHQKQVQKVSLTRGMADVPEHVELSHTHV
VGPSQCFSVVVQDVEAPVSTVWSILSRFEHPQAYKHFVKSCHVVIGDGREVGSVRE
VRVVSGLPAAFSLERLEIMDDDRHVISFSVVGGDHRLMNYKSVTTVHESEEDSDGK
KRTRVVESYVVDVPAGNDKEETCSFADTIVRCNLQSLAKLAENTSKFS (SEQ ID
N085).
PYL7:
MEMIGGDDTDTEMYGALVTAQSLRLRHLHHCRENQCTSVLVKYIQAPVHLVWSL
VRRFDQPQKYKPFISRCTVNGDPEIGCLREVNVKSGLPATTSTERLEQLDDEEHILGI
NIIGGDHRLKNYSSILTVHPEMIDGRSGTMVMESFVVDVPQGNTKDDTCYFVESLIK
ACVSERLAAQDITNSIATFCNASNGYREKNHTETNL (SEQ ID NO:86).
PYL8:
MEANGIENLTNPNQEREFIRRHHKHELVDNQCSSTLVKHINAPVHIVWSLVRRFDQ
FISRCVVKGNMEIGTVREVDVKSGLPATRSTERLELLDDNEHILSIRIVGGD
HRLKNYSSIISLHPETIEGRIGTLVIESFVVDVPEGNTKDETCYFVEALIKCNLKSLAD
ISERLAVQDTTESRV (SEQ ID N087).
PYL9:
MMDGVEGGTAMYGGLETVQYVRTHHQHLCRENQCTSALVKHIKAPLHLVWSLV
RRFDQPQKYKPFVSRCTVIGDPEIGSLREVNVKSGLPATTSTERLELLDDEEHILGIKI
IGGDHRLKNYSSILTVHPEIIEGRAGTMVIESFVVDVPQGNTKDETCYFVEALIRCNL
KSLADVSERLASQDITQ (SEQ ID NO:88).
PYRl:
MPSELTPEERSELKNSIAEFHTYQLDPGSCSSLHAQRIHAPPELVWSIVRRFDKPQTY
KHFIKSCSVEQNFEMRVGCTRDVIVISGLPANTSTERLDILDDERRVTGFSIIGGEHR
LTNYKSVTTVHRFEKENRIWTVVLESYVVDMPEGNSEDDTRMFADTVVKLNLQKL
ATVAEAMARNSGDGSGSQVT (SEQ ID NO:89).
] In some cases, a member of a dimer (e.g., a dimerizer—binding pair) is derived from
an ABI protein (also known as Abscisic Acid—Insensitive). For example a member of a
subject dimerizer—binding pair can be d from proteins such as those of Arabidopsis
thaliana: ABIl (Also known as IC ACID—INSENSITIVE 1, Protein phosphatase
2C 56, AtPP2C56, P2C56, and PP2C ABIl) and/or AB12(also known as P2C77, Protein
phosphatase 2C 77, AtPP2C77, ABSCISIC NSENSITIVE 2, Protein phosphatase
2C ABIZ, and PP2C ABIZ). For example, a suitable dimerizer—binding pair member can
comprise an amino acid sequence having at least about 75%, at least about 80%, at least
about 85%, at least about 90%, at least about 95%, at least about 98%, or 100% amino acid
sequence identity to a contiguous stretch of from about 100 amino acids to about 110 amino
acids (aa), from about 110 aa to about 115 aa, from about 115 aa to about 120 aa, from
about 120 aa to about 130 aa, from about 130 aa to about 140 aa, from about 140 aa to about
150 aa, from about 150 aa to about 160 aa, from about 160 aa to about 170 aa, from about
170 aa to about 180 aa, from about 180 aa to about 190 aa, or from about 190 aa to about
200 aa of any of the following amino acid sequences:
ABIl:
AIAGPFRPFSETQMDFTGIRLGKGYCNNQYSNQDSENGDLMVSLPETSSCS
VSGSHGSESRKVLISRINSPNLNMKESAAADIVVVDISAGDEINGSDITSEKKMISRT
ESRSLFEFKSVPLYGFTSICGRRPEMEDAVSTIPRFLQSSSGSMLDGRFDPQSAAHFF
GVYDGHGGSQVANYCRERMHLALAEEIAKEKPMLCDGDTWLEKWKKALFNSFLR
VDSEIESVAPETVGSTSVVAVVFPSHIFVANCGDSRAVLCRGKTALPLSVDHKPDRE
DEAARIEAAGGKVIQWNGARVFGVLAMSRSIGDRYLKPSIIPDPEVTAVKRVKEDD
CLILASDGVWDVMTDEEACEMARKRILLWHKKNAVAGDASLLADERRKEGKDPA
AMSAAEYLSKLAIQRGSKDNISVVVVDLKPRRKLKSKPLN (SEQ ID NO:90).
ABIZ:
MDEVSPAVAVPFRPFTDPHAGLRGYCNGESRVTLPESSCSGDGAMKDSSFEINTRQ
DSLTSSSSAMAGVDISAGDEINGSDEFDPRSMNQSEKKVLSRTESRSLFEFKCVPLY
GVTSICGRRPEMEDSVSTIPRFLQVSSSSLLDGRVTNGFNPHLSAHFFGVYDGHGGS
QVANYCRERMHLALTEEIVKEKPEFCDGDTWQEKWKKALFNSFMRVDSEIETVAH
APETVGSTSVVAVVFPTHIFVANCGDSRAVLCRGKTPLALSVDHKPDRDDEAARIE
AAGGKVIRWNGARVFGVLAMSRSIGDRYLKPSVIPDPEVTSVRRVKEDDCLILASD
GLWDVMTNEEVCDLARKRILLWHKKNAMAGEALLPAEKRGEGKDPAAMSAAEY
LSKMALQKGSKDNISVVVVDLKGIRKFKSKSLN (SEQ ID NO:9l).
In some cases, a member of a dimer (e.g., a dimerizer—binding pair) is derived from a
Cry2 protein (also known as cryptochrome 2). For example a member of a subject dimer
(e.g., a dimerizer—binding pair) can be derived from Cry2 proteins from any organism (e.g.,
a plant) such as, but not limited to, those of Arabidopsis thaliana. For example, a suitable
dimerizer—binding pair member can comprise an amino acid sequence having at least about
75%, at least about 80%, at least about 85%, at least about 90%, at least about 95%, at least
about 98%, or 100% amino acid ce ty to a uous h of from about 100
amino acids to about 110 amino acids (aa), from about 110 aa to about 115 aa, from about
115 aa to about 120 aa, from about 120 aa to about 130 aa, from about 130 aa to about 140
aa, from about 140 aa to about 150 aa, from about 150 aa to about 160 aa, from about 160
aa to about 170 aa, from about 170 aa to about 180 aa, from about 180 aa to about 190 aa, or
from about 190 aa to about 200 aa of any of the following amino acid sequences:
Cry2 (Arabidopsis thaliana)
MKMDKKTIVWFRRDLRIEDNPALAAAAHEGSVFPVFIWCPEEEGQFYPGRASRWW
MKQSLAHLSQSLKALGSDLTLIKTHNTISAILDCIRVTGATKVVFNHLYDPVSLVRD
LVERGISVQSYNGDLLYEPWEIYCEKGKPFTSFNSYWKKCLDMSIESVML
PPPWRLMPITAAAEAIWACSIEELGLENEAEKPSNALLTRAWSPGWSNADKLLNEFI
EKQLIDYAKNSKKVVGNSTSLLSPYLHFGEISVRHVFQCARMKQIIWARDKNSEGE
ESADLFLRGIGLREYSRYICFNFPFTHEQSLLSHLRFFPWDADVDKFKAWRQGRTG
YPLVDAGMRELWATGWMHNRIRVIVSSFAVKFLLLPWKWGMKYFWDTLLDADL
ECDILGWQYISGSIPDGHELDRLDNPALQGAKYDPEGEYIRQWLPELARLPTEWIHH
PWDAPLTVLKASGVELGTNYAKPIVDIDTARELLAKAISRTREAQIMIGAAPDEIVA
DSFEALGANTIKEPGLCPSVSSNDQQVPSAVRYNGSKRVKPEEEEERDMKKSRGFD
ERELFSTAESSSSSSVFFVSQSCSLASEGKNLEGIQDSSDQITTSLGKNGCK (SEQ ID
NO:92).
In some cases, a member of a dimer (e.g., a dimerizer—binding pair) is derived from
the CIBl Arabidopsis na protein (also known as transcription factor bHLH63). For
example, a le dimer (e.g., a dimerizer—binding pair) member can comprise an amino
acid sequence having at least about 75%, at least about 80%, at least about 85%, at least
about 90%, at least about 95%, at least about 98%, or 100% amino acid sequence identity to
a uous stretch of from about 100 amino acids to about 110 amino acids (aa), from
about 110 aa to about 115 aa, from about 115 aa to about 120 aa, from about 120 aa to about
130 aa, from about 130 aa to about 140 aa, from about 140 aa to about 150 aa, from about
150 aa to about 160 aa, from about 160 aa to about 170 aa, from about 170 aa to about 180
aa, from about 180 aa to about 190 aa, or from about 190 aa to about 200 aa of the
following amino acid sequence:
GDLLLNFPDMSVLERQRAHLKYLNPTFDSPLAGFFADSSMITGGEMDSYL
STAGLNLPMMYGETTVEGDSRLSISPETTLGTGNFKKRKFDTETKDCNEKKKKMT
MNRDDLVEEGEEEKSKITEQNNGSTKSIKKMKHKAKKEENNFSNDSSKVTKELEKT
DYIHVRARRGQATDSHSIAERVRREKISERMKFLQDLVPGCDKITGKAGMLDEIINY
VQSLQRQIEFLSMKLAIVNPRPDFDMDDIFAKEVASTPMTVVPSPEMVLSGYSHEM
VHSGYSSEMVNSGYLHVNPMQQVNTSSDPLSCFNNGEAPSMWDSHVQNLYGNLG
V (SEQ ID NO:93).
In some cases, a member of a dimer (e.g., a dimerizer—binding pair) is derived from
the GAIArabidopsis thaliana protein (also known as Gibberellic Acid Insensitive, and
DELLA protein GAI). For example, a suitable dimerizer—binding pair member can comprise
an amino acid sequence having at least about 75%, at least about 80%, at least about 85%,
at least about 90%, at least about 95%, at least about 98%, or 100% amino acid sequence
identity to a contiguous stretch of from about 100 amino acids to about 110 amino acids
(aa), from about 110 aa to about 115 aa, from about 115 aa to about 120 aa, from about 120
aa to about 130 aa, from about 130 aa to about 140 aa, from about 140 aa to about 150 aa,
from about 150 aa to about 160 aa, from about 160 aa to about 170 aa, from about 170 aa to
about 180 aa, from about 180 aa to about 190 aa, or from about 190 aa to about 200 aa of
the following amino acid sequence:
MKRDHHHHHHQDKKTMMMNEEDDGNGMDELLAVLGYKVRSSEMADVAQKLEQ
LEVMMSNVQEDDLSQLATETVHYNPAELYTWLDSMLTDLNPPSSNAEYDLKAIPG
DAILNQFAIDSASSSNQGGGGDTYTTNKRLKCSNGVVETTTATAESTRHVVLVDSQ
VHALLACAEAVQKENLTVAEALVKQIGFLAVSQIGAMRKVATYFAEALA
RRIYRLSPSQSPIDHSLSDTLQMHFYETCPYLKFAHFTANQAILEAFQGKKRVHVIDF
WO 27261
SMSQGLQWPALMQALALRPGGPPVFRLTGIGPPAPDNFDYLHEVGCKLAHLAEAIH
VEFEYRGFVANTLADLDASMLELRPSEIESVAVNSVFELHKLLGRPGAIDKVLGVV
NQIKPEIFTVVEQESNHNSPIFLDRFTESLHYYSTLFDSLEGVPSGQDKVMSEVYLGK
ACDGPDRVERHETLSQWRNRFGSAGFAAAHIGSNAFKQASMLLALFNGG
EGYRVEESDGCLMLGWHTRPLIATSAWKLSTN (SEQ ID NO:94).
In some cases, a member of a dimer (e.g., a dimerizer—binding pair) is d from a
GIDl Arabidopsis thaliana protein (also known as Gibberellin receptor GIDl). For
example, a suitable dimer member can comprise an amino acid sequence having at least
about 75%, at least about 80%, at least about 85%, at least about 90%, at least about 95%, at
least about 98%, or 100% amino acid sequence identity to a contiguous stretch of from
about 100 amino acids to about 110 amino acids (aa), from about 110 aa to about 115 aa,
from about 115 aa to about 120 aa, from about 120 aa to about 130 aa, from about 130 aa to
about 140 aa, from about 140 aa to about 150 aa, from about 150 aa to about 160 aa, from
about 160 aa to about 170 aa, from about 170 aa to about 180 aa, from about 180 aa to about
190 aa, or from about 190 aa to about 200 aa of any of the following amino acid sequences:
GIDlA:
MAASDEVNLIESRTVVPLNTWVLISNFKVAYNILRRPDGTFNRHLAEYLDRKVTAN
ANPVDGVFSFDVLIDRRINLLSRVYRPAYADQEQPPSILDLEKPVDGDIVPVILFFHG
GSFAHSSANSAIYDTLCRRLVGLCKCVVVSVNYRRAPENPYPCAYDDGWIALNWV
NSRSWLKSKKDSKVHIFLAGDSSGGNIAHNVALRAGESGIDVLGNILLNPMFGGNE
RTESEKSLDGKYFVTVRDRDWYWKAFLPEGEDREHPACNPFSPRGKSLEGVSFPKS
LVVVAGLDLIRDWQLAYAEGLKKAGQEVKLMHLEKATVGFYLLPNNNHFHNVM
DEISAFVNAEC (SEQ ID NO:95).
GIDlB:
MAGGNEVNLNECKRIVPLNTWVLISNFKLAYKVLRRPDGSFNRDLAEFLDRKVPA
NSFPLDGVFSFDHVDSTTNLLTRIYQPASLLHQTRHGTLELTKPLSTTEIVPVLIFFHG
GSFTHSSANSAIYDTFCRRLVTICGVVVVSVDYRRSPEHRYPCAYDDGWNALNWV
KSRVWLQSGKDSNVYVYLAGDSSGGNIAHNVAVRATNEGVKVLGNILLHPMFGG
EKTLDGKYFVTIQDRDWYWRAYLPEGEDRDHPACNPFGPRGQSLKGVNF
PKSLVVVAGLDLVQDWQLAYVDGLKKTGLEVNLLYLKQATIGFYFLPNNDHFHCL
MEELNKFVHSIEDSQSKSSPVLLTP (SEQ ID NO:96)
GIDlC:
MAGSEEVNLIESKTVVPLNTWVLISNFKLAYNLLRRPDGTFNRHLAEFLDRKVPAN
ANPVNGVFSFDVIIDRQTNLLSRVYRPADAGTSPSITDLQNPVDGEIVPVIVFFHGGS
FAHSSANSAIYDTLCRRLVGLCGAVVVSVNYRRAPENRYPCAYDDGWAVLKWVN
SSSWLRSKKDSKVRIFLAGDSSGGNIVHNVAVRAVESRIDVLGNILLNPMFGGTERT
ESEKRLDGKYFVTVRDRDWYWRAFLPEGEDREHPACSPFGPRSKSLEGLSFPKSLV
VVAGLDLIQDWQLKYAEGLKKAGQEVKLLYLEQATIGFYLLPNNNHFHTVMDEIA
AFVNAECQ (SEQ ID NO:97).
Dimerizers
Dimerizers (“dimerizing agents) that can provide for dimerization of a first member
of a zer—binding pair and a second member of a dimerizer—binding pair include, e.g.
(where the dimerizer is in parentheses following the dimerizer—binding pair:
a) FKBP and FKBP (rapamycin);
b) FKBP and CnA (rapamycin);
c) FKBP and cyclophilin (rapamycin);
d) FKBP and FRG (rapamycin);
e) GyrB and GyrB (coumermycin);
f) DHFR and DHFR (methotrexate);
g) DmrB and DmrB (AP20187);
h) PYL and ABI (abscisic acid);
i) Cry2 and CIBl (blue light); and
j) GAI and GIDl (gibberellin).
As noted above, rapamycin can serve as a dimerizer. Alternatively, a rapamycin
derivative or analog can be used. See, e.g., WO96/41865; WO 99/36553; WO 01/14387;
and Ye et al (1999) Science —91. For example, analogs, homologs, derivatives and
other compounds related structurally to rapamycin logs") include, among ,
variants of rapamycin having one or more of the following modifications relative to
rapamycin: demethylation, ation or replacement of the methoxy at C7, C42 and/or
C29; elimination, derivatization or ement of the hydroxy at C13, C43 and/or C28;
ion, elimination or derivatization of the ketone at C14, C24 and/or C30; ement
of the 6—membered pipecolate ring with a 5—membered prolyl ring; and alternative
substitution on the cyclohexyl ring or replacement of the cyclohexyl ring with a substituted
cyclopentyl ring. Additional information is presented in, e.g., US. Pat. Nos. 5,525,610;
,310,903 718; and 5,527,907. Selective epimerization of the C—28 hydroxyl group
has been described; see, e.g., W0 01/14387. Additional tic dimerizing agents suitable
for use as an alternative to rapamycin include those described in US. Patent Publication No.
2012/0130076.
Rapamycin has the structure:
Rapamycin
le rapalogs include, e.g.,
28—epirapamycin
Also suitable as a rapalog is a compound of the formula:
where n is l or 2; R28 and R43 are ndently H, or a substituted or unsubstituted
aliphatic or acyl moiety; one of R7a and R7b is H and the other is halo, RA, ORA, SRA, —
2014/016527
OC(O)RA, —OC(O)NRARB, —NRARB, —NRBC(OR)RA, )ORA, —NRBSOZRA, or
NRARB’; or R7a and R7b, taken together, are H in the tetraene moiety:
where RA is H or a substituted or tituted aliphatic, heteroaliphatic, aryl, or
heteroaryl moiety and where RB and RB, are independently H, OH, or a substituted or
unsubstituted aliphatic, heteroaliphatic, aryl, or heteroaryl moiety.
As noted above, coumermycin can serve as a dimerizing agent. Alternatively, a
coumermycin analog can be used. See, e.g., Farrar et al. (1996) Nature 383: 178-181; and
US. Pat. No. 846.
As noted above, in some cases, the dimerizing agent is methotrexate, e.g., a non—
cytotoxic, ifunctional methotrexate dimer. See, e. g., US. Patent No. 8,236,925.
Intracellular signaling domain
Intracellular signaling domains suitable for use in a CAR of the present disclosure
include any d signaling domain that provides a distinct and able signal (e. g.,
increased production of one or more cytokines by the cell; change in transcription of a target
gene; change in activity of a protein; change in cell behavior, e. g., cell death; cellular
proliferation; cellular differentiation; cell survival; modulation of cellular signaling
responses; etc.) in response to tion of the CAR (i.e., activated by antigen and
dimerizing agent). In some embodiments, the intracellular signaling domain includes at least
one (e. g., one, two, three, four, five, siX, etc.) ITAM motifs as described below. In some
embodiments, the intracellular signaling domain es DAPlO/CD28 type signaling
chains. In some embodiments, the intracellular signaling domain is not covalently attached
to the membrane bound CAR, but is instead diffused in the cytoplasm.
ITAM
Intracellular signaling domains suitable for use in a CAR of the present disclosure
include immunoreceptor tyrosine—based activation motif (lTAM)—containing intracellular
signaling polypeptides. An ITAM motif is YXngL/I, where X1 and X2 are independently
any amino acid (SEQ ID NO: 130). In some cases, the intracellular signaling domain of a
subject CAR ses 1, 2, 3, 4, or 5 ITAM motifs. In some cases, an ITAM motif is
repeated twice in an intracellular signaling domain, where the first and second instances of
the ITAM motif are separated from one another by 6 to 8 amino acids, e. g.,
(YX1X2L/I)(X3)n(YX1X2L/I), where n is an integer from 6 to 8, and each of the 6—8 X3 can
be any amino acid (SEQ ID NO: 131). In some cases, the intracellular signaling domain of a
subject CAR comprises 3 ITAM motifs.
A suitable intracellular signaling domain can be an ITAM motif—containing n
that is derived from a polypeptide that contains an ITAM motif. For example, a suitable
intracellular signaling domain can be an ITAM motif—containing domain from any ITAM
motif—containing protein. Thus, a suitable intracellular signaling domain need not contain
the entire sequence of the entire protein from which it is derived. Examples of suitable
ITAM motif—containing polypeptides include, but are not limited to: DAP12; FCERlG (Fc
epsilon receptor I gamma chain); CD3D (CD3 delta); CD3E (CD3 epsilon); CD3G (CD3
gamma); CD3Z (CD3 zeta); and CD79A (antigen receptor complex—associated protein alpha
chain).
In some cases, the intracellular signaling domain is derived from DAP12 (also
known as TYROBP; TYRO protein tyrosine kinase binding n; KARAP; PLOSL;
DNAX—activation protein 12; KAR—associated protein; TYRO protein tyrosine —
binding n; killer ting receptor associated protein; killer—activating receptor—
associated protein; etc.). For example, a suitable intracellular signaling domain polypeptide
can comprise an amino acid sequence having at least about 75%, at least about 80%, at least
about 85%, at least about 90%, at least about 95%, at least about 98%, or 100%, amino acid
sequence identity to any of the ing amino acid sequences (4 isoforms):
MGGLEPCSRLLLLPLLLAVSGLRPVQAQAQSDCSCSTVSPGVLAGIVMGDLVLTVLI
ALAVYFLGRLVPRGRGAAEAATRKQRITETESPMQGQRSDVYSiNTQRPYY
K (SEQ ID NO:98);
MGGLEPCSRLLLLPLLLAVSGLRPVQAQAQSDCSCSTVSPGVLAGIVMGDLVLTVLI
LGRLVPRGRGAAEATRKQRITETESPwQGQRSDVYSiNTQRPYYK
(SEQ ID NO:99);
MGGLEPCSRLLLLPLLLAVSDCSCSTVSPGVLAGIVMGDLVLTVLIALAVYFLGRLV
PRGRGAAEAATRKQRITETESPwQGQRSDVYSiNTQRPYYK (SEQ ID
NO:100); or
MGGLEPCSRLLLLPLLLAVSDCSCSTVSPGVLAGIVMGDLVLTVLIALAVYFLGRLV
AEATRKQRITETESPwQGQRSDVYSDLNTQRPYYK (SEQ ID NO: 101),
where the ITAM motifs are in bold and are underlined.
se, a suitable intracellular signaling domain polypeptide can comprise an
ITAM motif—containing portion of the full length DAP12 amino acid sequence. Thus, a
suitable intracellular ing domain ptide can comprise an amino acid sequence
having at least about 75%, at least about 80%, at least about 85%, at least about 90%, at
least about 95%, at least about 98%, or 100%, amino acid sequence identity to the following
amino acid ce:
ESPMQGQRSDVYSiNTQ (SEQ ID NO: 102), where the ITAM motifs are in bold
and are underlined.
In some cases, the intracellular signaling domain is derived from FCERlG (also
known as FCRG; Fc epsilon receptor I gamma chain; Fc receptor gamma—chain; fc—epsilon
RI—gamma; fcRgamma; fceRI gamma; high affinity immunoglobulin epsilon receptor
subunit gamma; immunoglobulin E receptor, high affinity, gamma chain; etc.). For
example, a suitable ellular signaling domain polypeptide can comprise an amino acid
sequence having at least about 75%, at least about 80%, at least about 85%, at least about
90%, at least about 95%, at least about 98%, or 100% amino acid ce identity to the
following amino acid sequence:
MIPAVVLLLLLLVEQAAALGEPQLCYILDAILFLYGIVLTLLYCRLKIQVRKAAITSY
EKSDGVYTGLSTRNQETYETLKHEKPPQ (SEQ ID NO: 103), where the ITAM motifs
are in bold and are underlined.
Likewise, a suitable intracellular signaling domain polypeptide can comprise an
ITAM motif—containing portion of the full length FCERlG amino acid sequence. Thus, a
suitable intracellular signaling domain polypeptide can comprise an amino acid ce
having at least about 75%, at least about 80%, at least about 85%, at least about 90%, at
least about 95%, at least about 98%, or 100%, amino acid ce ty to the following
amino acid sequence:
DGVYTGLSTRNQETYETLKHE (SEQ ID NO: 104), where the ITAM motifs are in bold
and are ined.
In some cases, the intracellular signaling domain is derived from T—cell surface
glycoprotein CD3 delta chain (also known as CD3D; CD3—DELTA; T3D; CD3 antigen,
delta subunit; CD3 delta; CD3d antigen, delta polypeptide (TiT3 compleX); OKT3, delta
chain; T—cell receptor T3 delta chain; T—cell surface glycoprotein CD3 delta chain; etc.). For
example, a suitable intracellular signaling domain polypeptide can comprise an amino acid
sequence having at least about 75%, at least about 80%, at least about 85%, at least about
90%, at least about 95%, at least about 98%, or 100%, amino acid sequence identity to a
contiguous stretch of from about 100 amino acids to about 110 amino acids (aa), from about
110 aa to about 115 aa, from about 115 aa to about 120 aa, from about 120 aa to about 130
aa, from about 130 aa to about 140 aa, from about 140 aa to about 150 aa, or from about 150
aa to about 170 aa, of either of the following amino acid sequences (2 isoforms):
MEHSTFLSGLVLATLLSQVSPFKIPIEELEDRVFVNCNTSITWVEGTVGTLLSDITRL
DLGKRILDPRGIYRCNGTDIYKDKESTVQVHYRMCQSCVELDPATVAGIIVTDVIAT
LLLALGVFCFAGHETGRLSGAADTQALLRNDQVMRDRDDAQflGGNWAR
NK (SEQ ID NO:105) or
MEHSTFLSGLVLATLLSQVSPFKIPIEELEDRVFVNCNTSITWVEGTVGTLLSDITRL
LDPRGIYRCNGTDIYKDKESTVQVHYRTADTQALLRNDQVMRDRDD
AQflGGNWARNK (SEQ ID NO: 106) where the ITAM motifs are in bold and are
underlined.
] Likewise, a suitable ellular signaling domain polypeptide can comprise an
ITAM motif—containing portion of the full length CD3 delta amino acid sequence. Thus, a
suitable intracellular signaling domain polypeptide can comprise an amino acid sequence
haVing at least about 75%, at least about 80%, at least about 85%, at least about 90%, at
least about 95%, at least about 98%, or 100%, amino acid sequence identity to the following
amino acid sequence:
DQVMRDRDDAQflGGN (SEQ ID NO: 107), where the ITAM motifs are in bold
and are underlined.
] In some cases, the intracellular signaling domain is derived from T—cell surface
glycoprotein CD3 epsilon chain (also known as CD3e, T—cell surface antigen T3/Leu—4
epsilon chain, T—cell surface glycoprotein CD3 epsilon chain, AI504783, CD3, ilon,
T3e, etc.). For example, a suitable intracellular signaling domain polypeptide can comprise
an amino acid sequence haVing at least about 75%, at least about 80%, at least about 85%,
at least about 90%, at least about 95%, at least about 98%, or 100%, amino acid sequence
identity to a uous stretch of from about 100 amino acids to about 110 amino acids
(aa), from about 110 aa to about 115 aa, from about 115 aa to about 120 aa, from about 120
aa to about 130 aa, from about 130 aa to about 140 aa, from about 140 aa to about 150 aa, or
from about 150 aa to about 205 aa, of the following amino acid sequence:
MQSGTHWRVLGLCLLSVGVWGQDGNEEMGGITQTPYKVSISGTTVILTCPQYPGSE
ILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPRGSKPEDANFYL
YLRARVCENCMEMDVMSVATIVIVDICITGGLLLLVYYWSKNRKAKAKPVTRGAG
AGGRQRGQNKERPPPVPNPDYEPIRKGQRDLYSGLNQRRI (SEQ ID NO: 108), where
the ITAM motifs are in bold and are underlined.
Likewise, a suitable ellular signaling domain ptide can comprise an
ITAM motif—containing portion of the full length CD3 epsilon amino acid sequence. Thus, a
suitable intracellular signaling domain polypeptide can comprise an amino acid ce
haVing at least about 75%, at least about 80%, at least about 85%, at least about 90%, at
least about 95%, at least about 98%, or 100%, amino acid sequence identity to the following
amino acid ce:
NPDYEPIRKGQRDLYSGLNQR (SEQ ID NO: 109), where the ITAM motifs are in bold
and are underlined.
In some cases, the intracellular signaling domain is derived from T—cell surface
glycoprotein CD3 gamma chain (also known as CD3G, T—cell receptor T3 gamma chain,
MMA, T3G, gamma polypeptide (TiT3 complex), etc.). For example, a suitable
intracellular signaling domain polypeptide can comprise an amino acid sequence haVing at
least about 75%, at least about 80%, at least about 85%, at least about 90%, at least about
95%, at least about 98%, or 100%, amino acid sequence identity to a contiguous stretch of
from about 100 amino acids to about 110 amino acids (aa), from about 110 aa to about 115
aa, from about 115 aa to about 120 aa, from about 120 aa to about 130 aa, from about 130
aa to about 140 aa, from about 140 aa to about 150 aa, or from about 150 aa to about 180 aa,
of the ing amino acid sequence:
MEQGKGLAVLILAIILLQGTLAQSIKGNHLVKVYDYQEDGSVLLTCDAEAKNITWF
KDGKMIGFLTEDKKKWNLGSNAKDPRGMYQCKGSQNKSKPLQVYYRMCQNCIEL
NAATISGFLFAEIVSIFVLAVGVYFIAGQDGVRQSRASDKQTLLPNDQLMKDRE
DDQflQGNQLRRN (SEQ ID NO:110), where the ITAM motifs are in bold and are
underlined.
] Likewise, a suitable intracellular signaling domain polypeptide can comprise an
ITAM motif—containing portion of the full length CD3 gamma amino acid sequence. Thus, a
suitable intracellular signaling domain polypeptide can comprise an amino acid sequence
haVing at least about 75%, at least about 80%, at least about 85%, at least about 90%, at
least about 95%, at least about 98%, or 100%, amino acid sequence ty to the following
amino acid sequence:
DQLMKDREDDQflQGN (SEQ ID NO:111), where the ITAM motifs are in bold
and are underlined.
In some cases, the intracellular signaling domain is derived from T—cell surface
glycoprotein CD3 zeta chain (also known as CD3Z, T—cell receptor T3 zeta chain, CD247,
CD3—ZETA, CD3H, CD3Q, T3Z, TCRZ, etc.). For example, a suitable intracellular
signaling domain polypeptide can comprise an amino acid sequence having at least about
75%, at least about 80%, at least about 85%, at least about 90%, at least about 95%, at least
about 98%, or 100%, amino acid sequence identity to a contiguous stretch of from about
100 amino acids to about 110 amino acids (aa), from about 110 aa to about 115 aa, from
about 115 aa to about 120 aa, from about 120 aa to about 130 aa, from about 130 aa to about
140 aa, from about 140 aa to about 150 aa, or from about 150 aa to about 160 aa, of either
of the following amino acid sequences (2 isoforms):
MKWKALFTAAILQAQLPITEAQSFGLLDPKLCYLLDGILFIYGVILTALFLRVKFSRS
QQGQNQLYNELNLGRREEYDVLDKRRGRDPEMGGKPRRKNPQEGLm
flQKDKMAEAYSEIGMKGERRRGKGHDGLMSTATKDTYDALHMQALPPR
(SEQ ID NO:112) or
MKWKALFTAAILQAQLPITEAQSFGLLDPKLCYLLDGILFIYGVILTALFLRVKFSRS
ADAPAYQQGQNQLYNELNLGRREEYDVLDKRRGRDPEMGGKPQRRKNPQEGLX
flQKDKMAEAYSEIGMKGERRRGKGHDGLMSTATKDTYDALHMQALPPR(
SEQ ID NO:113) where the ITAM motifs are in bold and are underlined.
Likewise, a suitable intracellular signaling domain polypeptide can comprise an
ITAM motif—containing portion of the full length CD3 zeta amino acid sequence. Thus, a
suitable intracellular signaling domain polypeptide can comprise an amino acid ce
haVing at least about 75%, at least about 80%, at least about 85%, at least about 90%, at
least about 95%, at least about 98%, or 100%, amino acid ce ty to any of the
following amino acid sequences:
RVKFSRSADAPAYQQGQNQLYNELNLGRREEYDVLDKRRGRDPEMGGKPRRKNP
QEGLYNELQKDKMAEAEGMKGERRRGKGHDGLMSTATKDTYDALHMQ
ALPPR (SEQ ID NO: 18);
NQLYNELNLGRREEYDVLDKR (SEQ ID NO:114);
EGLYNELQKDKMAEAEGMK (SEQ ID NO:115); or
DGLMSTATKDTYDALHMQ (SEQ ID NO:116), where the ITAM motifs are in bold
and are underlined.
In some cases, the intracellular signaling domain is derived from CD79A (also
known as B—cell antigen or x—associated protein alpha chain; CD79a n
(immunoglobulin—associated alpha); MB—l membrane glycoprotein; ig—alpha; membrane—
bound immunoglobulin—associated protein; surface IgM—associated protein; etc.). For
example, a suitable intracellular signaling domain polypeptide can comprise an amino acid
sequence haVing at least about 75%, at least about 80%, at least about 85%, at least about
90%, at least about 95%, at least about 98%, or 100%, amino acid sequence identity to a
contiguous stretch of from about 100 amino acids to about 110 amino acids (aa), from about
110 aa to about 115 aa, from about 115 aa to about 120 aa, from about 120 aa to about 130
aa, from about 130 aa to about 150 aa, from about 150 aa to about 200 aa, or from about 200
aa to about 220 aa, of either of the following amino acid sequences (2 ms):
MPGGPGVLQALPATIFLLFLLSAVYLGPGCQALWMHKVPASLMVSLGEDA
HFQCPHNSSNNANVTWWRVLHGNYTWPPEFLGPGEDPNGTLIIQNVNKSHGGIYV
CRVQEGNESYQQSCGTYLRVRQPPPRPFLDMGEGTKNRIITAEGIILLFCAVVPGTLL
LFRKRWQNEKLGLDAGDEYEDENLYEGLNLDDCSMMSRGLQGTYQDVGSLN
IGDVQLEKP (SEQ ID NO:117); or
MPGGPGVLQALPATIFLLFLLSAVYLGPGCQALWMHKVPASLMVSLGEDA
HFQCPHNSSNNANVTWWRVLHGNYTWPPEFLGPGEDPNEPPPRPFLDMGEGTKNR
IITAEGIILLFCAVVPGTLLLFRKRWQNEKLGLDAGDEYEDENLYEGLNLDDCSMYE
DISRGLQGTYQDVGSLNIGDVQLEKP (SEQ ID NO:118) where the ITAM motifs are
in bold and are underlined.
Likewise, a suitable intracellular signaling domain polypeptide can comprise an
ITAM motif—containing portion of the full length CD79A amino acid sequence. Thus, a
suitable intracellular signaling domain polypeptide can comprise an amino acid sequence
haVing at least about 75%, at least about 80%, at least about 85%, at least about 90%, at
least about 95%, at least about 98%, or 100%, amino acid sequence identity to the ing
amino acid sequence: ENLYEGLNLDDCSMYEDISRG (SEQ ID ), where the
ITAM motifs are in bold and are underlined.
DAP10/CD28
Intracellular signaling domains suitable for use in a CAR of the present disclosure
include a DAP10/CD28 type ing chain.
An e of a DAP10 ing chain is the amino acid sequence is:
RPRRSPAQDGKVYINMPGRG (SEQ ID NO: 120). In some embodiments, a suitable
intracellular signaling domain ses an amino acid sequence haVing at least about 85%,
at least about 90%, at least about 95%, at least about 98%, or at least about 99%, amino acid
sequence identity to the entire length of the amino acid sequence
RPRRSPAQDGKVYINMPGRG (SEQ ID NO: 120).
] An example of a CD28 signaling chain is the amino acid sequence is
FWVLVVVGGVLACYSLLVTVAFIIFWVRSKRSRLLHSDYMNMTPRRPGPTRKHYQ
PYAPPRDFAAYRS (SEQ ID NO: 121). In some embodiments, a suitable intracellular
signaling domain comprises an amino acid sequence having at least about 85%, at least
about 90%, at least about 95%, at least about 98%, or at least about 99%, amino acid
sequence identity to the entire length of the amino acid sequence
FWVLVVVGGVLACYSLLVTVAFIIFWVRSKRSRLLHSDYMNMTPRRPGPTRKHYQ
PYAPPRDFAAYRS (SEQ ID NO: 121).
ZAP70
Intracellular signaling s suitable for use in a CAR of the present disclosure
include a ZAP70 polypeptide, e. g., a polypeptide sing an amino acid sequence
haVing at least about 85%, at least about 90%, at least about 95%, at least about 98%, at
least about 99%, or 100%, amino acid sequence identity to a contiguous stretch of from
about 300 amino acids to about 400 amino acids, from about 400 amino acids to about 500
amino acids, or from about 500 amino acids to 619 amino acids, of the following amino
acid sequence:
MPDPAAHLPFFYGSISRAEAEEHLKLAGMADGLFLLRQCLRSLGGYVLSLVHDVRF
VFDCLRDAMVRDYVRQTWKLEGEALEQAIISQAPQVEKLIATTAHERMPWYHSSL
TREEAERKLYSGAQTDGKFLLRPRKEQGTYALSLIYGKTVYHYLISQDKAGKYCIP
EGTKFDTLWQLVEYLKLKADGLIYCLKEACPNSSASNASGAAAPTLPAHPSTLTHP
QRRIDTLNSDGYTPEPARITSPDKPRPMPMDTSVYESPYSDPEELKDKKLFLKRDNL
LGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQ
LDNPYIVRLIGVCQAEALMLVMEMAGGGPLHKFLVGKREEIPVSNVAELLHQVSM
GMKYLEEKNFVHRDLAARNVLLVNRHYAKISDFGLSKALGADDSYYTARSAGKW
PLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKGPEVMAFIEQG
PECPPELYALMSDCWIYKWEDRPDFLTVEQRMRACYYSLASKVEGPPGS
TQKAEAACA (SEQ ID NO:36).
Additional sequences
The first and/or the second polypeptide of a subject CAR can further include one or
more onal polypeptide domains, where such domains include, but are not limited to, a
signal sequence; an epitope tag; an affinity domain; and a polypeptide that produces a
detectable signal.
Signal sequences
Signal sequences that are suitable for use in a subject CAR, e. g., in the first
polypeptide of a subject CAR, include any otic signal sequence, including a
naturally—occurring signal sequence, a synthetic (e.g., de) signal sequence, etc.
Epitope tag
Suitable epitope tags e, but are not limited to, hemagglutinin (HA; e. g.,
YPYDVPDYA (SEQ ID NO:l22); FLAG (e.g., DYKDDDDK (SEQ ID NO:l23); c-myc
(e. g., EQKLISEEDL; SEQ ID NO:4), and the like.
Aflinity domain
] Affinity domains include peptide sequences that can interact with a binding partner,
e. g., such as one lized on a solid support, useful for identification or purification.
DNA ces encoding multiple consecutive single amino acids, such as histidine, when
fused to the expressed protein, may be used for one—step purification of the recombinant
protein by high affinity binding to a resin , such as nickel sepharose. Exemplary
affinity domains include His5 (HHHHH) (SEQ ID NO: 124), HisX6 H) (SEQ ID
NO:l25), C-myc (EQKLISEEDL) (SEQ ID NO:4), Flag (DYKDDDDK) (SEQ ID
NO:l23), StrepTag (WSHPQFEK) (SEQ ID NO:l26), hemagluttinin, e.g., HA Tag
(YPYDVPDYA) (SEQ ID NO: 122), GST, thioredoxin, cellulose binding domain, RYIRS
(SEQ ID NO: 127), Phe—His—His—Thr (SEQ ID NO: 128), chitin binding domain, S—peptide,
T7 peptide, SH2 domain, C—end RNA tag, WEAAAREACCRECCARA (SEQ ID NO: 129),
metal binding domains, e. g., zinc binding domains or calcium binding s such as
those from calcium—binding proteins, e. g., calmodulin, troponin C, calcineurin B, myosin
light chain, recoverin, S—modulin, visinin, VILIP, neurocalcin, hippocalcin, frequenin,
caltractin, calpain large—subunit, S100 ns, parvalbumin, calbindin D9K, calbindin
D28K, and calretinin, inteins, biotin, streptavidin, MyoD, Id, leucine zipper sequences, and
maltose binding protein.
Detectable signal-producing ptides
Suitable detectable signal—producing proteins include, e. g., fluorescent proteins;
enzymes that catalyze a reaction that generates a detectable signal as a product; and the like.
Suitable cent proteins include, but are not limited to, green fluorescent protein
(GFP) or ts thereof, blue cent variant of GFP (BFP), cyan cent variant
of GFP (CFP), yellow fluorescent variant of GFP (YFP), enhanced GFP (EGFP), ed
CFP (ECFP), enhanced YFP (EYFP), GFPS65T, Emerald, Topaz (TYFP), Venus, Citrine,
mCitrine, GFPuv, destabilised EGFP (dEGFP), destabilised ECFP (dECFP), destabilised
EYFP (dEYFP), mCFPm, Cerulean, T—Sapphire, CyPet, YPet, mKO, HcRed, t—HcRed,
DsRed, DsRed2, DsRed—monomer, J—Red, dimer2, t—dimer2(l2), mRFPl, oporin,
Renilla GFP, Monster GFP, paGFP, Kaede protein and kindling protein, Phycobiliproteins
and Phycobiliprotein conjugates including B—Phycoerythrin, R—Phycoerythrin and
2014/016527
Allophycocyanin. Other examples of fluorescent proteins e dew, mBanana,
mOrange, dTomato, o, mTangerine, mStrawberry, mCherry, mGrapel,
mRaspberry, mGrape2, mPlum (Shaner et al. (2005) Not. Methods 2:905—909), and the like.
Any of a variety of fluorescent and colored proteins from Anthozoan species, as described
in, e.g., Matz et al. (1999) Nature Biotechnol. 17:969—973, is le for use.
Suitable enzymes include, but are not d to, horse radish peroxidase (HRP),
alkaline phosphatase (AP), beta—galactosidase (GAL), glucose—6—phosphate dehydrogenase,
beta—N—acetylglucosaminidase, B—glucuronidase, invertase, Xanthine Oxidase, firefly
luciferase, glucose oxidase (GO), and the like.
Recombination of sequences
In certain instances, ces of the ptides of a CAR, e. g., CAR domains,
may be rearranged or deleted in a cell through the use of site—specific recombination
technology. In certain embodiments, the cellular activation—related response to a particular
CAR can be changed by site—specific recombination, e. g., a first intracellular signaling
domain of a CAR eliciting a first tion—related response may be exchanged for a second
intracellular signaling domain eliciting a second activation—related response. In certain
instances, the response to a particular dimerizer of a CAR can be changed by site—specific
recombination, e. g., a first dimerizer—binding pair causing the dimerization of a CAR in the
presence of a first dimerizer may be exchanged for a second dimerizer—binding pair g
the dimerization of the CAR in the presence of a second dimerizer. As will be clear to one
skilled in the art, site—specific recombination can be used in a cell to exchange any domain
or sequence of a CAR with any other domain or sequence as disclosed herein. As will also
be clear to one skilled in the art, site—specific ination can be used in a cell to delete
any domain or sequence of a CAR. Such exchange and excision of sequences and domains
is known in the art, see, e. g., domain switching in signalobodies as described in Tone et al.
(2013) Biotechnology and Bioengineering, 3219—3226, the disclosure of which is disclosed
herein by reference. Mechanisms and requirements for performing site— specific
ination in vivo are also well known in the art, see, e. g., Grindley et al. (2006) Annual
Review ofBiochemistry, 567-605 and Tropp (2012) Molecular Biology (Jones & Bartlett
Publishers, Sudbury, MA), the disclosures of which are incorporated herein by reference.
NUCLEIC ACIDS
The present disclosure provides a nucleic acid that comprises a nucleotide sequence
encoding the first and/or the second polypeptide of a heterodimeric, conditionally active
CAR of the present disclosure. A nucleic acid comprising a nucleotide ce encoding
the first and/or the second polypeptide of a heterodimeric, conditionally active CAR of the
present disclosure will in some ments be DNA, ing, e. g., a recombinant
expression . A nucleic acid comprising a nucleotide ce encoding the first
and/or the second polypeptide of a dimeric, conditionally active CAR of the present
disclosure will in some embodiments be RNA, e.g., in vitro synthesized RNA.
In some cases, a nucleic acid of the present sure comprises a nucleotide
sequence encoding only the first polypeptide (and not the second polypeptide) of a
heterodimeric, conditionally active CAR of the present disclosure. In some cases, a nucleic
acid of the present disclosure comprises a nucleotide sequence encoding only the second
polypeptide (and not the first polypeptide) of a heterodimeric, conditionally active CAR of
the present disclosure. In some cases, a nucleic acid of the present disclosure comprises a
nucleotide sequence encoding both the first polypeptide and the second polypeptide of a
heterodimeric, conditionally active CAR of the present disclosure.
] In some cases, a subject nucleic acid provides for production of a CAR of the
present disclosure, e. g., in a mammalian cell. In other cases, a subject nucleic acid provides
for amplification of the CAR—encoding nucleic acid.
A nucleotide sequence encoding the first and/or the second polypeptide of a CAR of
the present disclosure can be operably linked to a transcriptional control element, e. g., a
promoter, and enhancer, etc.
Suitable promoter and enhancer elements are known in the art. For expression in a
ial cell, suitable promoters include, but are not d to, lacI, lacZ, T3, T7, gpt,
lambda P and trc. For expression in a eukaryotic cell, suitable promoters include, but are not
limited to, light and/or heavy chain immunoglobulin gene promoter and enhancer elements;
cytomegalovirus immediate early er; herpes simplex virus ine kinase
promoter; early and late SV40 ers; promoter present in long terminal repeats from a
irus; mouse othionein—I promoter; and various art—known tissue specific
promoters.
Suitable reversible promoters, including reversible inducible ers are known in
the art. Such reversible promoters may be isolated and derived from many organisms, e. g.,
eukaryotes and prokaryotes. Modification of ible promoters derived from a first
organism for use in a second organism, e. g., a first prokaryote and a second a eukaryote, a
first eukaryote and a second a prokaryote, etc., is well known in the art. Such reversible
promoters, and systems based on such reversible ers but also comprising additional
control proteins, include, but are not limited to, alcohol regulated promoters (e. g., alcohol
2014/016527
dehydrogenase I (ach) gene promoter, promoters responsive to l transactivator
proteins (AlcR), etc.), tetracycline regulated promoters, (e. g., promoter systems including
TetActivators, TetON, , etc.), steroid regulated promoters (e. g., rat glucocorticoid
receptor promoter systems, human en receptor er systems, retinoid er
systems, d promoter systems, ne promoter systems, mifepristone promoter
systems, etc.), metal regulated promoters (e. g., metallothionein promoter systems, etc.),
pathogenesis—related regulated promoters (e.g., salicylic acid regulated promoters, ethylene
regulated promoters, benzothiadiazole regulated promoters, etc.), temperature regulated
promoters (e. g., heat shock ble promoters (e. g., HSP—70, HSP—90, soybean heat shock
promoter, etc.), light regulated promoters, synthetic ble promoters, and the like.
In some instances, the locus or construct or transgene containing the suitable
promoter is irreversibly switched through the induction of an inducible system. Suitable
systems for induction of an rsible switch are well known in the art, e. g., induction of
an irreversible switch may make use of a Cre—lox—mediated recombination (see, e. g.,
Fuhrmann—Benzakein, et al., PNAS (2000) 28:e99, the disclosure of which is incorporated
herein by reference). Any suitable combination of recombinase, endonuclease, ligase,
recombination sites, etc. known to the art may be used in generating an irreversibly
switchable er. Methods, mechanisms, and requirements for performing site—specific
recombination, described elsewhere herein, find use in generating rsibly switched
promoters and are well known in the art, see, e. g., Grindley et al. (2006) Annual Review of
Biochemistry, 567—605 and Tropp (2012) Molecular Biology (Jones & Bartlett Publishers,
Sudbury, MA), the disclosures of which are incorporated herein by reference.
In some cases, the er is a CD8 pecific promoter, a CD4 cell—specific
promoter, a neutrophil—specific promoter, or an cific promoter. For example, a CD4
gene promoter can be used; see, e. g., Salmon et al. (1993) Proc. Natl. Acad. Sci. USA
90:7739; and Marodon et al. (2003) Blood 101:3416. As another example, a CD8 gene
promoter can be used. NK pecific expression can be achieved by use of an Ncrl (p46)
promoter; see, e.g., Eckelhart et al. (2011) Blood ll7:1565.
In some embodiments, e. g., for expression in a yeast cell, a suitable promoter is a
constitutive promoter such as an ADHl promoter, a PGKl promoter, an ENO promoter, a
PYKl promoter and the like; or a regulatable promoter such as a GALl promoter, a GALlO
promoter, an ADH2 promoter, a PHOS promoter, a CUPl promoter, a GAL7 promoter, a
MET25 promoter, a MET3 promoter, a CYCl promoter, a HIS3 promoter, an ADHl
promoter, a PGK promoter, a GAPDH promoter, an ADCl promoter, a TRPl promoter, a
URA3 promoter, a LEU2 promoter, an ENO er, a TPl promoter, and AOXl (e. g.,
for use in Picliia). Selection of the appropriate vector and promoter is well within the level
of ordinary skill in the art.
Suitable promoters for use in prokaryotic host cells include, but are not limited to, a
bacteriophage T7 RNA polymerase promoter; a trp promoter; a lac operon promoter; a
hybrid promoter, e.g., a lac/tac hybrid promoter, a tac/trc hybrid er, a trp/lac
promoter, a T7/lac promoter; a trc promoter; a tac promoter, and the like; an araBAD
promoter; in viva regulated promoters, such as an ssaG promoter or a related promoter (see,
e. g., US. Patent Publication No. 20040131637), a pagC promoter (Pulkkinen and Miller, J.
Bacterial, 1991: 173(1): 86—93; e—Aranda et al., PNAS, 1992; 89(21): 10079—83), a
nirB promoter (Harborne et al. (1992) Mol. Micro. 6:2805—2813), and the like (see, e. g.,
n et al. (1999) Infect. Immun. 67:5133—5141; McKelvie et al. (2004) Vaccine
3—3255; and Chatfield et al. (1992) Biotechnol. 10:888—892); a sigma70 promoter,
e.g., a sus sigma70 promoter (see, e.g., GenBank Accession Nos. AX798980,
AX798961, and AX798183); a nary phase promoter, e. g., a dps promoter, an spv
promoter, and the like; a er derived from the pathogenicity island SPI—2 (see, e.g.,
7951); an actA promoter (see, e. g., Shetron—Rama et al. (2002) Infect. Immun.
70:1087—1096); an rpsM promoter (see, e.g., ia and Falkow (1996). Mal. Microbial.
22:367); a tet promoter (see, e. g., Hillen,W. and Wissmann,A. (1989) In Saenger,W. and
Heinemann,U. (eds), Topics in Molecular and Structural Biology, Protein—Nucleic Acid
Interaction. Macmillan, London, UK, Vol. 10, pp. 143—162); an SP6 promoter (see, e. g.,
Melton et al. (1984) Nucl. Acids Res. 12:7035); and the like. Suitable strong promoters for
use in yotes such as Escherichia coli include, but are not limited to Trc, Tac, T5, T7,
and PLambda. Non—limiting examples of operators for use in bacterial host cells include a
e promoter operator (Lacl sor n changes mation when contacted
with lactose, thereby preventing the Lacl repressor protein from binding to the operator), a
tryptophan promoter operator (when complexed with tryptophan, TrpR repressor protein has
a conformation that binds the operator; in the absence of tryptophan, the TrpR repressor
protein has a conformation that does not bind to the operator), and a tac promoter operator
(see, for example, deBoer et al. (1983) Proc. Natl. Acad. Sci. USA. 80:21—25).
A nucleotide sequence encoding a subject CAR can be present in an expression
vector and/or a cloning vector. Where a subject CAR comprises two separate polypeptides,
nucleotide sequences encoding the two polypeptides can be cloned in the same or separate
vectors. An expression vector can include a selectable marker, an origin of replication, and
other features that provide for replication and/or maintenance of the vector. Suitable
expression s include, e. g., plasmids, viral vectors, and the like.
Large numbers of suitable vectors and promoters are known to those of skill in the
art; many are commercially available for generating a t recombinant ucts. The
ing vectors are provided by way of example. Bacterial: sz, phagescript, PsiX174,
pBluescript SK, sz KS, pNH8a, , pNH18a, pNH46a (Stratagene, La Jolla, Calif.,
USA); pTrc99A, pKK223—3, pKK233—3, pDR540, and pRIT5 (Pharmacia, Uppsala,
Sweden). Eukaryotic: pWLneo, pSV2cat, pOG44, PXRl, pSG (Stratagene) pSVK3, pBPV,
pMSG and pSVL (Pharmacia).
Expression vectors generally have convenient restriction sites d near the
promoter sequence to provide for the insertion of nucleic acid sequences encoding
logous proteins. A selectable marker operative in the expression host may be present.
Suitable expression vectors include, but are not limited to, viral vectors (e. g. viral vectors
based on vaccinia virus; irus; adenovirus (see, e. g., Li et al., Invest Opthalmol Vis Sci
:2543 2549, 1994; Borras et al., Gene Ther 6:515 524, 1999; Li and Davidson, PNAS
0 7704, 1995; Sakamoto et al., H Gene Ther 5:1088 1097, 1999; WO 94/12649, WO
93/03769; WO 93/19191; WO 94/28938; WO 95/11984 and WO 95/00655); adeno-
associated virus (see, e.g., Ali et al., Hum Gene Ther 9:81 86, 1998, Flannery et al., PNAS
94:6916 6921, 1997; Bennett et al., Invest Opthalmol Vis Sci 38:2857 2863, 1997; Jomary
et al., Gene Ther 4:683 690, 1997, Rolling et al., Hum Gene Ther 10:641 648, 1999; Ali et
al., Hum Mol Genet 5:591 594, 1996; Srivastava in WO 93/09239, Samulski et al., J. Vir.
(1989) 63:3822—3828; Mendelson et al., Virol. (1988) 166:154—165; and Flotte et al., PNAS
(1993) 90:10613—10617); SV40; herpes simplex virus; human immunodeficiency virus (see,
e.g., Miyoshi et al., PNAS 94:10319 23, 1997; Takahashi et al., J Virol 73:7812 7816,
1999); a retroviral vector (e. g., Murine Leukemia Virus, spleen is virus, and s
derived from retroviruses such as Rous Sarcoma Virus, Harvey Sarcoma Virus, avian
leukosis virus, human immunodeficiency virus, myeloproliferative sarcoma virus, and
mammary tumor virus); and the like.
As noted above, in some embodiments, a nucleic acid comprising a nucleotide
sequence encoding the first and/or the second polypeptide of a heterodimeric, conditionally
active CAR of the present disclosure will in some embodiments be RNA, e. g., in vitro
synthesized RNA. Methods for in vitro synthesis of RNA are known in the art; any known
method can be used to synthesize RNA comprising a nucleotide sequence ng the first
and/or the second ptide of a heterodimeric, ionally active CAR of the present
disclosure. s for introducing RNA into a host cell are known in the art. See, e. g.,
Zhao et al. (2010) Cancer Res. 15:9053. Introducing RNA comprising a nucleotide
sequence encoding the first and/or the second polypeptide of a heterodimeric, conditionally
active CAR of the present disclosure into a host cell can be carried out in vitra or ex viva or
in viva. For example, a host cell (e. g., an NK cell, a xic T cyte, etc.) can be
electroporated in vitra or ex viva with RNA comprising a nucleotide sequence encoding the
first and/or the second polypeptide of a heterodimeric, ionally active CAR of the
present disclosure.
CELLS
The present disclosure provides a mammalian cell that is genetically modified to
produce a heterodimeric, ionally active CAR of the present disclosure.
Suitable ian cells include primary cells and immortalized cell lines.
Suitable mammalian cell lines include human cell lines, non—human primate cell lines,
rodent (e. g., mouse, rat) cell lines, and the like. le mammalian cell lines include, but
are not limited to, HeLa cells (e. g., American Type e Collection (ATCC) No. CCL—2),
CHO cells (e.g., ATCC Nos. CRL9618, CCL6l, CRL9096), 293 cells (e.g., ATCC No.
CRL—1573), Vero cells, NIH 3T3 cells (e.g., ATCC No. CRL—l658), Huh—7 cells, BHK
cells (e.g., ATCC No. CCLlO), PC12 cells (ATCC No. CRLl721), COS cells, COS—7 cells
(ATCC No. CRLl65 l), RATl cells, mouse L cells (ATCC No. CCLI.3), human embryonic
kidney (HEK) cells (ATCC No. CRLlS73), HLHepG2 cells, , Jurkat, HL—60, NK
cell lines (e. g., NKL, NK92, and YTS), and the like.
] In some instances, the cell is not an immortalized cell line, but is instead a cell (e. g.,
a primary cell) obtained from an individual. For example, in some cases, the cell is an
immune cell obtained from an individual. As an example, the cell is a T lymphocyte
obtained from an dual. As another example, the cell is a cytotoxic cell obtained from
an individual. As another example, the cell is a stem cell or progenitor cell obtained from an
individual.
METHODS OF ACTIVATING AN IMMUNE CELL
The present disclosure provides methods of activating an immune cell in vitra, in
viva, or ex viva. The methods generally involve contacting an immune cell (in vitra, in viva,
or ex viva) with a dimerizing agent and an antigen, where the immune cell is genetically
modified to produce a heterodimeric, conditionally active CAR of the present disclosure. In
the presence of the dimerizing agent and the antigen, the heterodimeric, conditionally active
CAR dimerizes and activates the immune cell, thereby producing an activated immune cell.
Immune cells include, e. g., a cytotoxic T cyte, an NK cell, a CD4+ T cell, a T
regulatory (Treg) cell, etc.
Contacting the genetically ed immune cell (e.g., a T lymphocyte, an NK cell)
with a dimerizing agent and a second member of a specific binding pair (e. g., an antigen, a
ligand, a receptor) can increase tion of a cytokine by the immune cell by at least
abouthQb,atleastabout159b,atleastabout209%,atleastabout2595,atleastabout309%,at
leastabout4095,atleastabout509b,atleastabout7595,atleastabout2—fifld,atleastabout
2.5—fold, at least about 5—fold, at least about lO—fold, or more than lO—fold, compared with
the amount of cytokine produced by the immune cell in the absence of the second member
of a specific binding pair and/or the dimerizing agent. Cytokines whose production can be
increased include, but are not limited to, IL—2 and IFN—y.
Contacting the genetically modified immune cell (e.g., a T lymphocyte, an NK cell)
with a dimerizing agent and an n can increase production of a cytokine by the immune
cellbyzfileastabout109b,atleastabout159%,atleastabout2095,atleastabout259%,at
bout3095,atleastabout4095,atleastaboutSOQb,atleastabout759b,atleastabout2—
fold, at least about 2.5—fold, at least about 5—fold, at least about lO—fold, or more than 10—
fold, compared with the amount of ne produced by the immune cell in the absence of
the antigen and/or the dimerizing agent. Cytokines whose production can be increased
e, but are not limited to, IL—2 and IFN—y.
Contacting a genetically modified cytotoxic cell (e.g., cytotoxic T lymphocyte) with
a dimerizing agent and a second member of a specific binding pair (e. g., an antigen, a
ligand, a receptor) can increase cytotoxic actiVity of the cytotoxic cell by at least about 10%,
atleastabout159b,atleastabout209b,atleastabout259b,atleastabout3095,atleastabout
40%, at least about 50%, at least about 75%, at least about 2—fold, at least about 2.5—fold, at
least about 5—fold, at least about lO—fold, or more than lO—fold, compared to the cytotoxic
actiVity of the cytotoxic cell in the absence of the zing agent.
Contacting a genetically modified cytotoxic cell (e. g., cytotoxic T lymphocyte) with
a dimerizing agent and an antigen can increase xic actiVity of the cytotoxic cell by at
leastabout109%,atleastabout159%,atleastabout2095,atleastabout2595,atleastabout
tleastabout4095,atleastabout509b,atleastabout759b,atleastabout2afifld,at
least about 2.5—fold, at least about 5—fold, at least about lO—fold, or more than lO—fold,
compared to the xic actiVity of the cytotoxic cell in the absence of the dimerizing
agent.
WO 27261
In other embodiments, e. g., depending on the host immune cell, contacting a
genetically modified host cell with a dimerizing agent and an antigen can increase or
decrease cell proliferation, cell survival, cell death, and the like.
METHODS OF GENERATING A CONDITIONALLY ACTIVATABLE CELL
The present disclosure provides a method of generating a conditionally activatable
cell. The method generally involves genetically modifying a mammalian cell with an
expression vector, or an RNA (e. g., in vitro ribed RNA), comprising nucleotide
sequences encoding a heterodimeric, conditionally active CAR of the present disclosure.
The genetically modified cell is conditionally activatable in the presence of: a) an antigen to
which the first ptide of the CAR binds; and b) a dimerizer (a zing agent). The
c modification can be carried out in vivo, in vitro, or ex vivo. The cell can be an
immune cell (e. g., a T lymphocyte or NK cell), a stem cell, a progenitor cell, etc.
In some cases, the genetic cation is carried out ex vivo. For example, a T
lymphocyte, a stem cell, or an NK cell is obtained from an individual; and the cell obtained
from the individual is genetically modified to express a CAR of the present disclosure. The
cally modified cell is ionally activatable in the presence of: a) an antigen to
which the first polypeptide of the CAR binds; and b) a dimerizer. In some cases, the
genetically modified cell is activated ex vivo. In other cases, the genetically modified cell is
introduced into an individual (e.g., the individual from whom the cell was obtained); and the
genetically modified cell is activated in viva, e. g., by administering to the individual a
dimerizer. For example, where the antigen is present on the e of a cell in the
individual, there is no need to administer the antigen. The genetically modified cell comes
into contact with the antigen present on the surface of a cell in the individual; and, upon
administration to the individual of a dimerizer, the cally modified cell is activated. For
example, where the genetically modified cell is a T lymphocyte, the genetically modified
cell can exhibit cytotoxicity toward a cell that presents an antigen on its surface to which the
CAR binds.
TREATMENT METHODS
The t sure provides various treatment methods using a subject CAR.
Cytotoxicity methods
A CAR of the present disclosure, when present in a T cyte or an NK cell, can
mediate cytotoxicity toward a target cell. A CAR of the t disclosure binds to an
antigen present on a target cell, y mediating killing of a target cell by a T lymphocyte
or an NK cell genetically modified to produce the CAR. The antigen—binding domain of the
CAR binds to an antigen present on the surface of a target cell.
] Target cells include, but are not limited to, cancer cells. Thus, the present disclosure
provides methods of killing, or inhibiting the growth of, a target cancer cell, the method
involving contacting a cytotoxic immune effector cell (e. g., a cytotoxic T cell, or an NK
cell) that is cally modified to produce a subject CAR, such that the T lymphocyte or
NK cell recognizes an antigen present on the surface of a target cancer cell, and mediates
g of the target cell.
The present disclosure provides a method of treating cancer in an dual having
a cancer, the method comprising: i) genetically modifying T lymphocytes obtained from the
individual with an expression vector comprising nucleotide sequences encoding the
heterodimeric, conditionally active CAR of the present disclosure, where the antigen—
g domain of the heterodimeric, conditionally active CAR is specific for an epitope on
a cancer cell in the individual, and where the genetic cation is carried out ex vivo; ii)
introducing the genetically modified T cytes into the individual; and iii)
administering to the individual an effective amount of a dimerizing agent, n the
dimerizing agent s dimerization of the heterodimeric, conditionally active CAR,
wherein said zation provides for activation of the genetically modified T lymphocytes
and killing of the cancer cell, thereby ng the cancer.
omas that can be amenable to therapy by a method disclosed herein include,
but are not d to, esophageal carcinoma, hepatocellular carcinoma, basal cell carcinoma
(a form of skin cancer), squamous cell carcinoma (various tissues), bladder carcinoma,
including transitional cell carcinoma (a malignant neoplasm of the bladder), bronchogenic
carcinoma, colon carcinoma, colorectal carcinoma, gastric carcinoma, lung carcinoma,
including small cell carcinoma and non—small cell oma of the lung, adrenocortical
carcinoma, thyroid carcinoma, pancreatic oma, breast carcinoma, ovarian carcinoma,
prostate carcinoma, adenocarcinoma, sweat gland carcinoma, sebaceous gland carcinoma,
papillary carcinoma, papillary adenocarcinoma, cystadenocarcinoma, medullary carcinoma,
renal cell carcinoma, ductal carcinoma in situ or bile duct carcinoma, choriocarcinoma,
seminoma, embryonal carcinoma, Wilm's tumor, cervical carcinoma, uterine carcinoma,
testicular carcinoma, osteogenic carcinoma, epithelial carcinoma, and nasopharyngeal
carcinoma.
Sarcomas that can be le to therapy by a method disclosed herein include, but
are not limited to, fibrosarcoma, myxosarcoma, liposarcoma, osarcoma, chordoma,
osteogenic sarcoma, arcoma, angiosarcoma, endotheliosarcoma, lymphangiosarcoma,
lymphangioendotheliosarcoma, synovioma, mesothelioma, Ewing's sarcoma,
osarcoma, rhabdomyosarcoma, and other soft tissue sarcomas.
Other solid tumors that can be amenable to therapy by a method disclosed herein
e, but are not limited to, glioma, astrocytoma, medulloblastoma, craniopharyngioma,
ependymoma, pinealoma, hemangioblastoma, acoustic neuroma, oligodendroglioma,
menangioma, melanoma, neuroblastoma, and retinoblastoma.
Leukemias that can be amenable to therapy by a method disclosed herein include,
but are not limited to, a) chronic myeloproliferative syndromes (neoplastic disorders of
multipotential hematopoietic stem cells); b) acute myelogenous leukemias (neoplastic
transformation of a multipotential hematopoietic stem cell or a hematopoietic cell of
restricted lineage potential; c) chronic lymphocytic leukemias (CLL; clonal proliferation of
immunologically immature and functionally incompetent small lymphocytes), including B—
cell CLL, T—cell CLL prolymphocytic leukemia, and hairy cell leukemia; and d) acute
lymphoblastic leukemias cterized by accumulation of lymphoblasts). Lymphomas that
can be treated using a subject method include, but are not limited to, B—cell lymphomas
(e. g., Burkitt's ma); Hodgkin's lymphoma; non—Hodgkin's lymphoma, and the like.
] Other cancers that can be amenable to ent according to the methods disclosed
herein include atypical meningioma (brain), islet cell oma eas), medullary
carcinoma id), mesenchymoma (intestine), hepatocellular carcinoma (liver),
hepatoblastoma (liver), clear cell carcinoma (kidney), and neurofibroma mediastinum.
Immunomodulatory methods
] A subject method can also be used to treat inflammatory conditions and autoimmune
disease. A t CAR is sed in a er cell or a Tregs for use in an
immunomodulatory method. Immunomodulatory methods include, e. g., enhancing an
immune response in a mammalian subject toward a pathogen; enhancing an immune
response in a subject who is immunocompromised; reducing an inflammatory response;
reducing an immune response in a mammalian subject to an autoantigen, e. g., to treat an
autoimmune e; and reducing an immune response in a mammalian subject to a
lanted organ or tissue, to reduce organ or tissue rejection.
Where the method involves reducing an immune response to an autoantigen, the
antigen used to activate the CAR is an autoantigen. Where the method involves reducing an
immune se to a transplanted organ or tissue, the antigen used to activate the CAR is
an antigen specific to the transplanted organ.
Formulations, dosages, and routes of administration
As discussed above, a treatment method of the present disclosure involves
stration to an individual in need thereof of an effective amount of a dimerizer agent,
and may also involve administration of an antigen.
An “effective amount” of a dimerizer agent is in some cases an amount that, when
administered in one or more doses to an individual in need thereof, increases the level of
cytotoxic ty of a T lymphocyte expressing a subject CAR by at least about 10%, at
least about 15%, at least about 20%, at least about 25%, at least about 30%, at least about
40%, at least about 50%, at least about 75%, at least about 2—fold, at least about 2.5—fold, at
least about 5—fold, at least about 10—fold, or more than 10—fold, compared to the cytotoxic
ty of the T lymphocyte in the absence of the dimerizing agent.
An “effective amount” of a dimerizer agent is in some cases an amount that, when
administered in one or more doses to an individual in need thereof, increases the level of
cytotoxic activity of an NK cell sing a subject CAR by at least about 10%, at least
about 15%, at least about 20%, at least about 25%, at least about 30%, at least about 40%, at
least about 50%, at least about 75%, at least about 2—fold, at least about ld, at least
about 5—fold, at least about 10—fold, or more than 10—fold, compared to the cytotoxic activity
of the NK cell in the e of the dimerizing agent.
An “effective amount” of a dimerizer agent is in some cases an amount that, when
administered in one or more doses to an individual in need thereof, reduces the number of
cancer cells in the individual and/or reduces tumor mass in the individual, by at least about
%, at least about 15%, at least about 20%, at least about 25%, at least about 30%, at least
about 40%, at least about 50%, at least about 75%, or more than 75%, compared to the
number of cancer cells and/or tumor mass in the absence of the zing agent.
In some embodiments, an effective amount of a dimerizer is an amount that, when
administered alone (e.g., in monotherapy) or in combination (e.g., in combination therapy)
with one or more additional therapeutic agents, in one or more doses, is effective to reduce
one or more of tumor growth rate, cancer cell number, and tumor mass, by at least about
%, at least about 10%, at least about 15%, at least about 20%, at least about 25%, at least
about 30%, at least about 40%, at least about 50%, at least about 60%, at least about 70%, at
least about 80%, at least about 90%, or more, compared to the tumor growth rate, cancer
cell number, or tumor mass in the e of treatment with the dimerizer.
Formulations
] In the subject methods, a dimerizer can be administered to the host using any
convenient means capable of resulting in the desired therapeutic effect or diagnostic .
Thus, the dimerizer can be incorporated into a variety of formulations for therapeutic
administration. More particularly, a dimerizer can be formulated into pharmaceutical
compositions by combination with appropriate, pharmaceutically acceptable carriers or
diluents, and may be formulated into preparations in solid, semi—solid, liquid or gaseous
forms, such as tablets, capsules, powders, granules, ointments, solutions, suppositories,
ions, inhalants and aerosols.
In pharmaceutical dosage forms, a dimerizer can be administered in the form of their
pharmaceutically acceptable salts, or they may also be used alone or in appropriate
association, as well as in combination, with other pharmaceutically active compounds. The
following methods and excipients are merely ary and are in no way limiting.
Suitable excipient vehicles are, for example, water, saline, dextrose, glycerol,
ethanol, or the like, and combinations thereof. In addition, if desired, the vehicle may
contain minor amounts of auxiliary substances such as wetting or emulsifying agents or pH
buffering . Actual methods of preparing such dosage forms are known, or will be
nt, to those skilled in the art. E, gg, Remington's Pharmaceutical Sciences, Mack
Publishing Company, Easton, lvania, 17th edition, 1985. The composition or
formulation to be administered will, in any event, contain a quantity of a dimerizer te
to achieve the desired state in the subject being treated.
The ceutically acceptable excipients, such as es, adjuvants, carriers or
ts, are readily available to the public. er, pharmaceutically acceptable
auxiliary substances, such as pH adjusting and buffering agents, tonicity adjusting agents,
stabilizers, wetting agents and the like, are readily available to the public.
For oral preparations, a dimerizer can be used alone or in combination with
appropriate additives to make tablets, powders, granules or capsules, for example, with
tional additives, such as lactose, mannitol, corn starch or potato starch; with binders,
such as crystalline cellulose, cellulose derivatives, acacia, corn starch or gelatins; with
disintegrators, such as corn starch, potato starch or sodium carboxymethylcellulose; with
lubricants, such as talc or magnesium stearate; and if desired, with ts, buffering
agents, moistening agents, vatives and flavoring agents.
A dimerizer can be formulated into preparations for injection by dissolving,
suspending or fying them in an aqueous or nonaqueous t, such as vegetable or
other similar oils, synthetic aliphatic acid glycerides, esters of higher tic acids or
propylene ; and if d, with conventional additives such as lizers, isotonic
agents, suspending agents, emulsifying agents, stabilizers and preservatives.
Pharmaceutical compositions comprising a dimerizer are prepared by mixing the
dimerizer having the desired degree of purity with optional physiologically acceptable
carriers, excipients, stabilizers, surfactants, buffers and/or tonicity agents. Acceptable
carriers, excipients and/or stabilizers are nontoxic to recipients at the dosages and
concentrations employed, and include buffers such as phosphate, citrate, and other organic
acids; antioxidants including ascorbic acid, glutathione, cysteine, methionine and citric acid;
preservatives (such as ethanol, benzyl alcohol, phenol, m—cresol, p—chlor—m—cresol, methyl
or propyl parabens, benzalkonium chloride, or combinations thereof); amino acids such as
arginine, glycine, ornithine, lysine, ine, glutamic acid, aspartic acid, isoleucine,
leucine, alanine, phenylalanine, tyrosine, phan, methionine, serine, proline and
combinations thereof; monosaccharides, disaccharides and other ydrates; low
molecular weight (less than about 10 residues) polypeptides; proteins, such as gelatin or
serum albumin; chelating agents such as EDTA; sugars such as trehalose, sucrose, lactose,
e, mannose, e, galactose, fructose, sorbose, raffinose, glucosamine, N—
methylglucosamine, galactosamine, and neuraminic acid; and/or non—ionic surfactants such
as Tween, Brij Pluronics, Triton—X, or polyethylene glycol (PEG).
The pharmaceutical composition may be in a liquid form, a lyophilized form or a
liquid form reconstituted from a lyophilized form, wherein the lyophilized preparation is to
be reconstituted with a sterile solution prior to administration. The rd procedure for
reconstituting a lyophilized composition is to add back a volume of pure water ally
equivalent to the volume removed during lyophilization); r solutions comprising
antibacterial agents may be used for the production of pharmaceutical compositions for
parenteral administration; see also Chen (1992) Drug Dev Ind Pharm 18, 131 l—54.
The term “unit dosage form,” as used herein, refers to physically discrete units
suitable as y dosages for human and animal subjects, each unit containing a
predetermined quantity a dimerizer calculated in an amount ient to produce the desired
effect in association with a pharmaceutically acceptable diluent, carrier or e. The
specifications for a given dimerizer may depend on the ular dimerizer employed and
the effect to be achieved, and the pharmacodynamics associated with each dimerizer in the
host.
In some embodiments, a dimerizer is formulated in a controlled release formulation.
Sustained—release preparations may be prepared using s well known in the art.
Suitable examples of sustained—release preparations include semipermeable es of
solid hydrophobic polymers containing the dimerizer in which the es are in the form
of shaped articles, e. g. films or microcapsules. es of sustained—release matrices
include polyesters, copolymers of amic acid and ethyl—L—glutamate, non—degradable
ethylene—vinyl e, hydrogels, polylactides, degradable lactic acid—glycolic acid
copolymers and —(—)—3—hydroxybutyric acid. Possible loss of biological activity may
be prevented by using appropriate additives, by controlling moisture content and by
developing specific polymer matrix compositions.
Dosages
A suitable dosage can be determined by an attending physician or other qualified
medical personnel, based on various clinical factors. As is well known in the medical arts,
dosages for any one patient depend upon many factors, including the patient's size, body
surface area, age, the particular dimerizer to be administered, sex of the patient, time, and
route of administration, general health, and other drugs being administered concurrently. A
dimerizer may be administered in amounts between 1 ng/kg body weight and 20 mg/kg
body weight per dose, e.g. between 0.1 mg/kg body weight to 10 mg/kg body weight, e.g.
between 0.5 mg/kg body weight to 5 mg/kg body ; r, doses below or above
this exemplary range are envisioned, especially considering the aforementioned factors. If
the regimen is a continuous infusion, it can also be in the range of 1 ug to 10 mg per
kilogram of body weight per minute.
Those of skill will readily appreciate that dose levels can vary as a function of the
ic dimerizer, the ty of the symptoms and the susceptibility of the subject to side
effects. Preferred dosages for a given compound are readily determinable by those of skill in
the art by a variety of means.
Routes of administration
A dimerizer is administered to an individual using any available method and route
suitable for drug delivery, including in vivo and ex vivo methods, as well as systemic and
zed routes of administration.
Conventional and pharmaceutically acceptable routes of administration include
umoral, peritumoral, intramuscular, intratracheal, intracranial, aneous,
intradermal, topical application, intravenous, intraarterial, rectal, nasal, oral, and other
l and parenteral routes of administration. Routes of administration may be combined,
if desired, or adjusted depending upon the dimerizer and/or the desired effect. A dimerizer
can be administered in a single dose or in le doses. In some ments, a dimerizer
is administered orally. In some ments, a dimerizer is administered via an inhalational
route. In some embodiments, a dimerizer is administered intranasally. In some
embodiments, a zer is administered locally. In some embodiments, a dimerizer is
administered intratumorally. In some embodiments, a dimerizer is administered
peritumorally. In some embodiments, a dimerizer is administered intracranially. In some
embodiments, a dimerizer is administered intravenously.
The agent can be administered to a host using any available conventional methods
and routes suitable for ry of conventional drugs, ing systemic or localized
. In general, routes of administration contemplated by the ion include, but are
not necessarily limited to, enteral, parenteral, or inhalational routes.
Parenteral routes of administration other than inhalation administration include, but
are not necessarily limited to, topical, transdermal, subcutaneous, intramuscular,
intraorbital, intracapsular, intraspinal, intrasternal, intratumoral, peritumoral, and
intravenous routes, i.e., any route of administration other than through the tary canal.
Parenteral administration can be carried to effect systemic or local delivery of a dimerizer.
Where systemic ry is desired, administration typically involves invasive or
systemically absorbed topical or mucosal administration of ceutical preparations.
A dimerizer can also be delivered to the subject by l administration. Enteral
routes of administration include, but are not necessarily limited to, oral and rectal (e.g.,
using a suppository) delivery.
] By treatment is meant at least an amelioration of the symptoms associated with the
pathological condition afflicting the host, where amelioration is used in a broad sense to
refer to at least a reduction in the magnitude of a parameter, e.g. symptom, ated with
the pathological condition being treated, such as cancer. As such, treatment also includes
situations where the pathological condition, or at least symptoms associated therewith, are
completely ted, e.g. prevented from happening, or stopped, e.g. terminated, such that
the host no longer suffers from the pathological condition, or at least the ms that
characterize the pathological condition.
In some embodiments, a dimerizer is administered by injection and/or delivery, e. g.,
to a site in a brain artery or directly into brain tissue. A dimerizer can also be administered
directly to a target site e. g., by direct injection, by implantation of a drug delivery device
such as an c pump or slow release particle, by tic delivery to the target site, etc.
Combination therapy
In some embodiments, a dimerizer is administered as an adjuvant therapy to a
standard cancer therapy. Standard cancer therapies include surgery (e. g., surgical removal of
ous tissue), radiation therapy, bone marrow transplantation, chemotherapeutic
treatment, antibody treatment, biological response modifier ent, and certain
combinations of the foregoing.
] Radiation therapy includes, but is not d to, x—rays or gamma rays that are
delivered from either an externally applied source such as a beam, or by implantation of
small radioactive sources.
Suitable antibodies for use in cancer ent e, but are not limited to, naked
antibodies, e. g., zumab (Herceptin) bevacizumab (AvastinTM), mab
(ErbituxTM), panitumumab (VectibixTM), Ipilimumab (YervoyTM), rituximab (Rituxan),
alemtuzumab (LemtradaTM), Ofatumumab (ArzerraTM), Oregovomab (OvaRexTM),
Lambrolizumab (MK—3475), pertuzumab (PerjetaTM), ranibizumab (LucentisTM) etc., and
conjugated antibodies, e. g., gemtuzumab ozogamicin (MylortargTM), Brentuximab vedotin
(AdcetrisTM), 90Y—labelled ibritumomab tiuxetan (ZevalinTM), 131I—labelled tositumoma
rTM), etc. Suitable antibodies for use in cancer treatment include, but are not limited
to, antibodies raised against tumor—associated ns. Such antigens include, but are not
limited to, CD20, CD30, CD33, CD52, EpCAM, CEA, gpA33, Mucins, TAG-72, CAIX,
PSMA, Folate—binding protein, Gangliosides (e. g., GD2, GD3, GM2, etc.), Le y , VEGF,
VEGFR, Integrin alpha—V—beta—3, Integrin alpha—5—beta—l, EGFR, ERBB2, ERBB3, MET,
IGFlR, EPHA3, TRAILRl, TRAILRZ, RANKL, FAP, Tenascin, etc.
Biological response modifiers suitable for use in connection with the methods of the
present disclosure include, but are not limited to, (1) inhibitors of tyrosine kinase (RTK)
activity; (2) inhibitors of serine/threonine kinase activity; (3) tumor—associated antigen
antagonists, such as antibodies that bind specifically to a tumor antigen; ( 4) apoptosis
receptor ts; (5) interleukin—2; (6) interferon—(1.; (7) interferon —y; (8) colony—
stimulating factors; (9) inhibitors of angiogenesis; and (10) antagonists of tumor necrosis
factor.
Chemotherapeutic agents are non—peptidic (i.e., non—proteinaceous) compounds that
reduce proliferation of cancer cells, and encompass cytotoxic agents and cytostatic .
Non—limiting es of chemotherapeutic agents include alkylating agents, nitrosoureas,
antimetabolites, mor antibiotics, plant (vinca) ids, and steroid hormones.
Agents that act to reduce cellular proliferation are known in the art and Widely used.
Such agents include alkylating agents, such as nitrogen mustards, nitrosoureas, ethylenimine
derivatives, alkyl sulfonates, and triazenes, including, but not limited to, rethamine,
cyclophosphamide (CytoxanTM), melphalan (L—sarcolysin), carmustine (BCNU), lomustine
(CCNU), semustine (methyl—CCNU), streptozocin, chlorozotocin, uracil mustard,
chlormethine, ifosfamide, chlorambucil, pipobroman, triethylenemelamine,
triethylenethiophosphoramine, busulfan, dacarbazine, and lomide.
Antimetabolite agents include folic acid s, pyrimidine analogs, purine
analogs, and adenosine deaminase tors, including, but not limited to, cytarabine
(CYTOSAR—U), cytosine arabinoside, fluorouracil (5—FU), floxuridine (FudR), 6—
anine, 6—mercaptopurine (6—MP), pentostatin, 5—fluorouracil (5—FU), methotrexate,
l0—propargyl—5,8—dideazafolate (PDDF, ), 5,8—dideazatetrahydrofolic acid
(DDATHF), leucovorin, fludarabine ate, pentostatine, and gemcitabine.
le natural products and their derivatives, (e. g., vinca alkaloids, antitumor
otics, enzymes, lymphokines, and epipodophyllotoxins), include, but are not d
to, Ara—C, paclitaxel ®), docetaxel (Taxotere®), deoxycoformycin, mitomycin—C, L—
asparaginase, azathioprine; brequinar; alkaloids, e.g. vincristine, vinblastine, vinorelbine,
vindesine, eta; podophyllotoxins, e.g. etoposide, side, eta; antibiotics, e.g.
anthracycline, daunorubicin hloride (daunomycin, rubidomycin, cerubidine),
idarubicin, doxorubicin, epirubicin and morpholino derivatives, eta; phenoxizone
biscyclopeptides, e.g. dactinomycin; basic glycopeptides, e.g. bleomycin; anthraquinone
glycosides, e.g. plicamycin (mithramycin); anthracenediones, e.g. mitoxantrone;
azirinopyrrolo indolediones, e.g. mitomycin; macrocyclic immunosuppressants, e.g.
cyclosporine, FK—506 (tacrolimus, prograf), rapamycin, etc; and the like.
Other anti—proliferative cytotoxic agents are navelbene, CPT—l l, anastrazole,
ole, capecitabine, reloxafine, cyclophosphamide, ifosamide, and droloxafine.
Microtubule affecting agents that have oliferative activity are also suitable for
use and include, but are not limited to, allocolchicine (NSC 406042), Halichondrin B (NSC
609395), colchicine (NSC 757), colchicine derivatives (e.g., NSC 33410), dolstatin 10
(NSC ), maytansine (NSC l53858), rhizoxin (NSC 332598), axel (Taxol®),
Taxol® derivatives, docetaxel (Taxotere®), thiocolchicine (NSC 361792), trityl cysterin,
vinblastine sulfate, vincristine sulfate, natural and synthetic epothilones including but not
limited to, eopthilone A, epothilone B, discodermolide; estramustine, nocodazole, and the
like.
WO 27261
Hormone modulators and steroids (including synthetic analogs) that are le for
use include, but are not limited to, adrenocorticosteroids, e.g. prednisone, dexamethasone,
eta; estrogens and pregestins, e.g. hydroxyprogesterone caproate, medroxyprogesterone
acetate, rol acetate, iol, clomiphene, tamoxifen; etc; and adrenocortical
suppressants, e.g. aminoglutethimide; l70t—ethinylestradiol; diethylstilbestrol, terone,
fluoxymesterone, dromostanolone propionate, testolactone, methylprednisolone, methyl—
testosterone, prednisolone, triamcinolone, chlorotrianisene, hydroxyprogesterone,
aminoglutethimide, estramustine, medroxyprogesterone acetate, leuprolide, Flutamide
(Drogenil), Toremifene (Fareston), and Zoladex®. Estrogens stimulate proliferation and
differentiation, therefore compounds that bind to the estrogen receptor are used to block this
ty. Corticosteroids may inhibit T cell proliferation.
Other chemotherapeutic agents include metal complexes, e.g. cisplatin (cis—DDP),
carboplatin, eta; ureas, e.g. hydroxyurea; and ines, e.g. ylhydrazine;
epidophyllotoxin; a topoisomerase inhibitor; procarbazine; mitoxantrone; leucovorin;
r; etc.. Other roliferative agents of st include immunosuppressants, e.g.
mycophenolic acid, thalidomide, desoxyspergualin, azasporine, leflunomide, mizoribine,
rane (SKF ); Iressa® (ZD 1839, hloro—4—fluorophenylamino)—7—
methoxy—6—(3—(4—morpholinyl)propoxy)quinazoline); etc.
"Taxanes" include paclitaxel, as well as any active taxane derivative or pro—drug.
"Paclitaxel" (which should be understood herein to include analogues, formulations, and
derivatives such as, for example, docetaxel, TAXOLTM, TAXOTERETM (a formulation of
docetaxel), lO—desacetyl analogs of paclitaxel and 3'N—desbenzoyl—3'N—t—butoxycarbonyl
analogs of paclitaxel) may be readily prepared utilizing techniques known to those skilled in
the art (see also WO 94/07882, WO 94/0788l, WO 94/07880, WO 94/07876, WO
93/23555, WO 93/10076; US. Pat. Nos. 5,294,637; 5,283,253; 5,279,949; 5,274,137;
,202,448; 5,200,534; 5,229,529; and EP 590,267), or obtained from a variety of
commercial sources, including for example, Sigma Chemical Co., St. Louis, Mo. (T7402
from Taxus brevifolia; or T—l9l2 from Taxus yannanensis).
Paclitaxel should be understood to refer to not only the common chemically
available form of paclitaxel, but analogs and derivatives (e. g., TaxotereTM docetaxel, as
noted above) and axel conjugates (e. g., paclitaxel—PEG, paclitaxel—dextran, or
paclitaxel—xylose).
Also included within the term “taxane” are a y of known derivatives, including
both hydrophilic derivatives, and hydrophobic derivatives. Taxane derivatives include, but
not limited to, galactose and mannose derivatives described in International Patent
Application No. WO 99/18113; piperazino and other derivatives bed in W0
99/14209; taxane tives described in WO 99/09021, WO 51, and US. Patent
No. 5,869,680; 6—thio derivatives described in WO 98/28288; sulfenamide derivatives
described in US. Patent No. 5,821,263; and taxol derivative described in US. Patent No.
,415,869. It further includes prodrugs of paclitaxel including, but not limited to, those
described in WO 98/58927; WO 98/13059; and US. Patent No. 5,824,701.
SUBJECTS SUITABLE FOR TREATMENT
A variety of subjects are suitable for treatment with a subject method of treating
cancer. Suitable subjects e any dual, e. g., a human or non—human animal who
has cancer, who has been diagnosed with cancer, who is at risk for developing cancer, who
has had cancer and is at risk for recurrence of the cancer, who has been treated with an
agent other than a zer for the cancer and failed to respond to such treatment, or who
has been treated with an agent other than a dimerizer for the cancer but relapsed after initial
response to such treatment.
Subjects suitable for treatment with a subject immunomodulatory method include
individuals who have an autoimmune er; individuals who are organ or tissue
transplant recipients; and the like; duals who are immunocompromised; and
individuals who are infected with a en.
The following examples are put forth so as to provide those of ordinary skill in the
art with a complete disclosure and description of how to make and use the present
invention, and are not intended to limit the scope of what the inventors regard as their
invention nor are they intended to represent that the experiments below are all or the only
experiments performed. s have been made to ensure accuracy with respect to
numbers used (e. g. amounts, temperature, etc.) but some experimental errors and deviations
should be accounted for. Unless indicated otherwise, parts are parts by weight, molecular
weight is weight e molecular weight, temperature is in degrees Celsius, and re
is at or near atmospheric. Standard abbreviations may be used, e. g., bp, base pair(s); kb,
kilobase(s); pl, picoliter(s); s or sec, second(s); min, minute(s); h or hr, hour(s); aa, amino
acid(s); kb, kilobase(s); bp, base pair(s); nt, nucleotide(s); i.m., intramuscular(ly); i.p.,
intraperitoneal(ly); s.c., subcutaneous(ly); i.v., intravenous(1y); and the like.
Example 1: Generation of CAR
MATERIALS AND METHODS
The anti—human CD19 scFv was selected as the antigen recognition domain in CARs
throughout the design optimization process. Figures 18A and 18B summarize the molecular
structure of each CAR consisting of two numerically identified polypeptides. All
membrane—anchored polypeptides are di— sulfide bonded homo—dimers. The membrane—
ed ptides are depicted as monomers for graphical simplicity.
Generation of CAR constructs
Sequence encoding the anti—human CD19 scFv was cloned from a construct. The
human 4—1BB co—stimulation and CD3 zeta lTAM ing chains were cloned from
cDNAs supplied by Open Biosystems. FKBP— and FRB—encoding sequences were cloned
from plasmids supplied by e.
Standard molecular cloning techniques (polymerase chain reaction (PCR), restriction
ion, ligation, etc.) were d to generate lentiviral expression plasmids.
Effector and target cell ing conditions
Human primary CD8+ T cells were isolated from anonymous donor’s blood after
apheresis (Trima residuals from Blood Centers of the Pacific, San Francisco, CA) by
negative selection using RosetteSep Human CD8+ T Cell Enrichment Cocktail
(STEMCELL Technologies #15063) as approved by University Institutional Review Board.
Cells were cultured in human T cell medium, consisting of l5 (Lonza #04—418Q),
% human AB serum (Valley Biomedical Inc., #HP1022), 10mM N—acetyl L—Cysteine
(Sigma—Aldrich #A9165) and 100 IU/mL recombinant human IL—2 (NCI/BRB Preclinical
Repository). A Jurkat cell line sing the Green Fluorescent Protein (GFP) upon NFAT
activation was maintained in 640 medium supplemented with 10% fetal bovine
serum (FBS), llin and streptomycin. K562 target cells from U. Penn were ed in
IMDM supplemented with 10% FBS.
Effector and target cell engineering with irus
Pantropic VSV—G pseudotyped lentivirus was produced from Lenti—X 293T cells
ech Laboratories #632180) co—transfected with a pHR’SINzCSW transgene
expression vector, viral packaging plasmids pCMVdR8.91 and pMD2.G using
Lipofectamine LTX (Life Technologies #15338). Infection medium supernatant was
collected 48 hours after transfection and used directly for transduction.
Twenty four hours prior to viral transduction, primary human T cells were activated
using the human T—Activator CD3/CD28 Dynabeads (Life Technologies #111—31D) at a 1:3
cell:bead ratio. Jurkat and K562 cells were split l~2 days in advance to ensure that cultures
would be in log phase at the time of transduction. Transduced Jurkat and K562 cells were
cultured for at least 7 days before experiments were conducted. Primary T cells were
maintained at ~lOA6/mL in human T cell medium for about two weeks until cells returned
to a resting state. Expression levels of CARs d in the iral constructs were
quantified by detecting either fluorophore—conjugated antibodies or fluorescent reporter
proteins using a flow cytometer.
Quantitation of IL—2 production and NFAT activity
Jurkat CD4+ T cells expressing CARs were mixed with cognate or non—cognate
K562 target cells from U. Penn at a 1:2 effector:target ratio. The rapalog A/C
Heterodimerizer (Clontech tories #635055) were serially diluted in medium and
added to reaction mixtures. After 20~24 hours of incubation, medium supematants were
collected and ed with ED OptEIA Human IL—2 ELISA Set (BD Biosciences
#555 190). Flow cytometry was performed to quantify NFAT—dependent GFP reporter
expression in Jurkat cells as a separate indicator for CAR activity.
Flow cytometry—based re—directed cytotoxicity assay
The cognate and non—cognate K562 target cells were engineered to express distinct
cent proteins so that both cell types in a mixture could be simultaneously quantified
by flow cytometry. The target cell types were mixed at a 1:1 ratio and ubated with
human primary CD8+ effector T cells at a 5:2 or:target ratio. 100 IU/mL human IL—2
and varying amounts of the g (Clontech Laboratories #635055) were added to
reaction mixtures. After 24 hours of incubation, samples were fuged at 400g for 5
minutes. Pelleted cells were resuspended in wash buffer (PBS + 0.5% BSA + 0.1% sodium
azide) and fixed with an equal volume of BD Cytofix (BD cat #554655) prior to flow
cytometry. Ratios of the surviving cognate target cells to gnate target cells were
ated for each sample to enumerate re—directed cytotoxic activities of the effector cells.
RESULTS
IL—2 production elicited by the various CAR constructs was assessed. The data are
presented in Figure 12.
] Figure 12. IL—2 production triggered by five On—switch CAR variants. Effector 2
human CD4+ Jurkat T cells engineered with CARs. Target 2 K562 cell lines with or
without the cognate CD19 antigen. Amounts of secreted IL—2 by effector cells were
quantified by enzyme—linked immunosorbent assay (ELISA).
WO 27261
Figure 13. IL—2 production by control Jurkat lines in the same experiment as that
bed in Figure 12. uct “125” encodes a conventional l currently used in
clinical trials.
Figure 14. ison between “122 + 206” and “197 + 206” in a separate
experiment under conditions identical to those described in Figure 12.
Figure 15 demonstrates pharmacologically titratable cytoxicity conferred by the On—
switch CAR “197+206” In the presence of the small molecule rapalog, the CAR effectively
mediates re—directed xicity towards cognate target cells. At high dosages of rapalog,
this On—switch CAR can signal as strongly as the “125” conventional CAR. Effector 2
human primary CD8+ T cells engineered with CARs or a control vector. Target 2
fluorescent derivatives of K562 cell lines expressing either the cognate human CD19
antigen or the non—cognate human mesothelin antigen.
Figure 16 depicts data for CARs constructed with the asmic tyrosine kinase
Zap70 from the T cell receptor pathway as the intracellular signaling domain.
Figure 16 shows data from Jurkat cells ered with several variants of On—
switch CARs. The engineered Jurkat cells were co—incubated with K562 target cells with or
without the cognate antigen (CD19) and the indicated concentrations of g. As a CAR
ent, the Zap70 kinase (first and second structures from left ing “199”) was as
effective as the ITAM (third structure from left featuring “168”) in activating NFAT
function. Addition of the 4—1BB signaling domain increased surface expression of the
antigen ition portion of the receptor and led to stronger signaling by “197+199”. A
non—signaling CAR (far—right) was ed as a negative control.
e 2: CARs targeting mesothelin
MATERIALS AND METHODS
A number of chimeric antigen receptor constructs were made and tested. The
constructs shown here encode three different anti—human mesothelin scFv as the antigen
recognition domains. Figures 19A, 19B, and 19C summarize the molecular structure of each
anti—human mesothelin CAR, with each CAR comprising two polypeptides. The
intercellular portion of each anti—human mesothelin CAR comprises two 4—1BB co—
stimulatory domains, an FKBP and FRB dimerizer—binding pair, and an ITAM intracellular
signaling domain. The three different antigen recognition domains shown here are anti—
mesothelin HNl scFv, SSl scFv, and m912 scFv. All membrane—anchored polypeptides are
di—sulfide bonded homo—dimers.
Generation of CAR constructs
Sequences encoding the anti—mesothelin were cloned from ucts or synthesized
via gene assembly by PCR. The human 4—1BB co—stimulation and CD3 zeta lTAM
signaling chains were cloned from cDNAs supplied by Open Biosystems. HNl scFv—, SS1
scFv—, and m912 scFv—encoding sequences were synthesized by PCR and, in some cases,
codon zed. FKBP— and FRB—encoding sequences were cloned from Addgene
plasmids.
] Standard lar cloning techniques (polymerase chain reaction (PCR), restriction
digestion, ligation, etc.) were applied to generate lentiviral expression plasmids.
Effector and target cell culturing conditions
A Jurkat cell line expressing GFP upon NFAT activation was maintained in RPMI—
1640 medium supplemented with 10% FBS, penicillin and streptomycin. K562 target cells
were cultured in IMDM supplemented with 10% fetal bovine serum (FBS).
Effector and target cell engineering with lentivirus
Pantropic VSV—G pseudotyped lentivirus was ed from Lenti—X 293T cells
(Clontech Laboratories #632180) co—transfected with a pHR’SINzCSW transgene
expression vector, viral packaging ds pCMVdR8.91 and pMD2.G using
Lipofectamine LTX (Life Technologies #15338). Infection medium supernatant was
collected 48 hours after transfection and used ly for transduction.
Jurkat and K562 cells were split 1~2 days in advance to ensure that cultures would
be in log phase at the time of transduction. Transduced Jurkat and K562 cells were cultured
for at least 7 days before experiments were conducted. Expression levels of CARs encoded
in the lentiviral constructs were quantified by detecting either fluorophore—conjugated
dies or fluorescent reporter proteins using a flow cytometer.
Quantitation of IL—2 tion
Jurkat CD4+ T cells expressing CARs were mixed with cognate or non—cognate
K562 target cells at a 1:2 effector:target ratio. The rapalog A/C dimerizer (Clontech
Laboratories #635055) were serially diluted in medium and added to reaction mixtures.
After 20~24 hours of incubation, medium supernatants were collected and analyzed with
ED OptEIA Human IL—2 ELISA Set (BD Biosciences #555190).
IL—2 production elicited by the anti—mesothelin CAR constructs was assessed. The
data are presented in Figure 19D—F.
2014/016527
Figure 19. IL—2 production triggered by HNl scFv (Fig. 19D), SS1 scFv (Fig. 19E),
and m912 scFv (Fig. 19F) On—switch CAR variants. IL—2 production by a conventional
CAR (Fig. 19G, construct #358) was measured and included for comparison to tch
CARs (Fig. 19D). Effector 2 human CD4+ Jurkat T cells engineered with CARs. Target 2
K562 cell lines with or without the cognate mesothelin antigen. Amounts of secreted IL—2
by effector cells were quantified by enzyme—linked immunosorbent assay (ELISA).
Example 3: Gibberellic acid as a dimerizer of On—switch CARs
MATERIALS AND S
] Figure 20A summarizes the lar structure of the t ellic acid
dimerizer CAR. The antigen binding portion comprises the anti—human CD19 scFv. The
intracellular portion comprises two 4— 1BB co—stimulatory domains, a GIDl and GAI
dimerizer—binding pair, and an ITAM intracellular signaling domain. All membrane—
anchored polypeptides are di—sulfide bonded homo—dimers.
Generation of CAR constructs
ces encoding the gibberellic acid dimerizer CAR were cloned from
constructs. The anti—CD19 scFv was cloned from a plasmid. The human 4—1BB co—
stimulation and CD3 zeta ITAM signaling chains were cloned from cDNAs supplied by
Open Biosystems. GIDl— and GAI—encoding ces were cloned from Addgene
plasmids. Standard molecular cloning techniques (polymerase chain reaction (PCR),
restriction digestion, ligation, etc.) were applied to generate lentiviral expression plasmids.
Effector and target cell culturing conditions
A Jurkat cell line expressing GFP upon NFAT activation was maintained in RPMI—
1640 medium supplemented with 10% FBS, penicillin and streptomycin. K562 target cells
were cultured in IMDM supplemented with 10% fetal bovine serum (FBS).
Effector and target cell engineering with lentivirus
Pantropic VSV—G pseudotyped lentivirus was produced from Lenti—X 293T cells
(Clontech Laboratories #632180) co—transfected with a pHR’SINzCSW transgene
expression , viral ing plasmids pCMVdR8.91 and pMD2.G using
ctamine LTX (Life Technologies ). Infection medium supernatant was
collected 48 hours after transfection and used directly for transduction.
Jurkat and K562 cells were split 1~2 days in advance to ensure that cultures would
be in log phase at the time of uction. Transduced Jurkat and K562 cells were cultured
for at least 7 days before experiments were conducted. Expression levels of CARs encoded
in the lentiviral constructs were quantified by detecting either fluorophore—conjugated
antibodies or cent reporter proteins using a flow cytometer.
tation of IL—2 production
Jurkat CD4+ T cells expressing CARs were mixed with cognate or non—cognate
K562 target cells at a 1:2 effector:target ratio. The gibberellic acid—3 acetoxymethyl ester
(gibberrelic acid—3 AM) pre—dissolved in ethanol (Toronto Research Chemicals #G377500)
was diluted in growth medium and added to reaction mixtures. Gibberellic acid (gibberellic
acid—3 AM) was used at 10 mM. After 20~24 hours of incubation, medium supematants
were collected and analyzed with ED OptEIA Human IL—2 ELISA Set (BD ences
#555 190).
RESULTS
IL—2 production elicited by the gibberellic acid dimerizer CAR construct was
assessed. The data are presented in Figure 20.
Figure 20. IL—2 production triggered by gibberellic acid dimerizer CAR variant (Fig.
20B). IL—2 production by a conventional CAR (Fig. 20C, construct “125”) was measured
and ed for comparison to On—switch CAR. or 2 human CD4+ Jurkat T cells
engineered with CARs. Target 2 K562 cell lines with or t the cognate CD19 antigen.
Amounts of secreted IL—2 by effector cells were quantified by enzyme—linked
immunosorbent assay (ELISA).
e 4: On—switch CARs with various co—stimulatog domains
MATERIALS AND METHODS
A number of chimeric antigen receptor constructs were made essentially as
described for Example 1, except various other co—stimulatory domains were exchanged for
the 4—1BB co—stimulatory domains. Figures 21A and 21B summarize the molecular
structure of the CARs described here.
Generation of CAR constructs
Sequences ng the anti—human CD19 scFv were cloned from a plasmid. The
human CD3 zeta lTAM signaling chain and the human co—stimulatory s CD28 and
OX—40 encoding sequences were cloned from cDNAs supplied by Open Biosystems.
FKBP— and FRB—encoding ces were cloned from plasmids from Addgene.
Standard molecular cloning techniques erase chain reaction (PCR), restriction
digestion, ligation, etc.) were d to generate lentiviral expression plasmids.
Testing of CAR constructs
Effector and target cells are cultured and transfected according to e 1 using
the on—switch CAR CD28 and OX—40 co—stimulatory domain containing constructs
described (Fig. 2lA—B, constructs ”365+367” and ”399+400”, respectively) and
corresponding conventional CAR controls (Fig. 2lC—D, constructs “366” and “398”,
respectively). IL—2 tion, NFAT activity assays, and flow cytometry—based assays can
also be performed with the CD28 co—stimulatory domain containing construct and OX—40
co—stimulatory domain ning construct as described for Example 1. Alternatively,
subunits of on—switch CAR CD28 and OX—40 co—stimulatory domain containing constructs
can be paired with subunits of constructs from Example 1 (e. g., 67”, “ 365+206,”
“197+400”, “399+206,” etc.).
Example 5: In vivo assessment of On—switch CAR
An On—switch CAR can be assessed for its y to mediate in viva killing of a
target tumor cell. In vivo tumor cell g elicited by injection of T cells expressing the
ON—switch CAR is assessed. Tumor cell lines that have been confirmed in vitro to s
the cognate antigen and can be killed by CD8+ T cells expressing the corresponding CAR
are used. Tumor cells engineered to express either the firefly or Renilla luciferase to enable
bio—luminescence imaging to quantify tumor burden in viva can be used. Tumor cells are
injected into immunocompromised mice (e. g., 6~lO week old female NOD scid gamma
(NSG) mice) either subcutaneously for subcutaneous tumor models or intravenously for
systemic tumor models. The method of tumor implantation and the optimal number of
tumor cells to implant can be based on conditions optimal for the tumor cell line used.
Tumor burden can be monitored twice a week by bio—luminescence imaging and by r
measurement when applicable. As soon as tumor burden is detectable, 0.5~2.5 x lOA7 total
T cells (lzl CD4+:CD8+) expressing the ON—switch CAR are intravenously ed into
mice to begin ent. A dimerizing small molecule drug (e. g., rapalog) is administered
intraperitoneally in a vehicle formulation. On—switch CAR—expressing T cells can be
injected repeatedly during the experiment to enhance the anti—tumor effect. Interleukin—2
(IL—2) can be administered to enhance the anti—tumor effect.
While the present invention has been described with nce to the specific
embodiments f, it should be tood by those skilled in the art that various
s may be made and equivalents may be substituted without departing from the true
spirit and scope of the invention. In addition, many modifications may be made to adapt a
particular situation, material, composition of matter, process, process step or steps, to the
objective, spirit and scope of the present ion. All such modifications are intended to
be within the scope of the claims appended hereto.
Claims (41)
1. A heterodimeric, conditionally active chimeric antigen receptor (CAR) comprising: a) a first polypeptide comprising: i) a first member of a ic binding pair; ii) a first co-stimulatory domain; iii) a first member of a dimerization pair; and iv) a transmembrane domain interposed between the first member of a specific binding pair and the first co-stimulatory domain; and b) a second polypeptide comprising: i) a transmembrane domain; ii) a second co-stimulatory domain; iii) a second member of the dimerization pair; and iv) an intracellular ing domain; or comprising: a) a first polypeptide comprising: i) a first member of a specific binding pair; ii) a co-stimulatory domain; iii) a first member of a dimerization pair; iv) a transmembrane domain interposed n the first member of a specific binding pair and the co-stimulatory ; and b) a second polypeptide comprising: i) a second member of the dimerization pair; and ii) an intracellular signaling domain, wherein the first and second members of the dimerization pair form a homodimer or a heterodimer in the presence of a dimerizing agent.
2. The heterodimeric, conditionally active CAR of claim 1, wherein the order of the domains in the first polypeptide from the amino terminus to the carboxyl terminus is: the first member of the specific g domain, the transmembrane domain, the first co-stimulatory domain and the first member of the dimerization pair.
3. The heterodimeric, ionally active CAR of claim 1 or 2, wherein the first polypeptide comprises a hinge region such as an immunoglobulin lgG hinge region or a hinge derived from CD8 interposed between the first member of the specific binding pair and the transmembrane domain.
4. The heterodimeric, conditionally active CAR of any one of the preceding claims, wherein the first member of the ic binding pair is an antibody or antibody fragment, a ligand, or a receptor.
5. The dimeric, conditionally active CAR of any one of the preceding claims, wherein the first and second co-stimulatory domains are selected from 4-1BB (CD137), CD28, ble T-Cell Costimulator Precursor (ICOS), B- and T-Lymphocyte Attenuator (BTLA), OX-40, CD27, CD30, glucocorticoid-induced TNFR-Related (GITR) and Herpes virus entry mediator (HVEM).
6. The heterodimeric, conditionally active CAR of any one of the preceding claims, wherein the intracellular signaling domain comprises an immunoreceptor tyrosine-based activation motif (ITAM), and is selected from CD3-zeta and ZAP70.
7. The heterodimeric, conditionally active CAR of any one of the preceding claims, wherein the first and second members of the dimerization pair are ed from: a) FK506 binding protein (FKBP) and FKBP-rapamycin associated protein (FRB); b) Gibberellic Acid Insensitive (GAI) and Gibberelin-Insensitive Dwarf 1 (GID1). c) FKBP and eurin tic subunit A (CnA); d) FKBP and cyclophilin; e) FKBP and FKBP; f) gyrase B (GyrB) and GyrB; g) dihydrofolate reductase (DHFR) and DHFR; h) Dihydromethanopterin reduc tase B (DmrB) and DmrB; i) Pyrabactin Resistance 1-like (PYL) and abscisic acid insensitive (ABI); and j) chrome-2 (Cry2) and cryptochrome-interacting basic-helix-loop-helix 1 (CIB1).
8. The heterodimeric, conditionally active CAR of claim 1, wherein the first member of the specific g pair is a single-chain Fv and: i) the first and second co-stimulatory s are derived from 4-1BB; ii) the first and second members of the zation pair are FKBP and FRB; iii) the signaling domain comprises an ITAM.
9. The heterodimeric, conditionally active CAR of any one of the preceding claims, wherein the first member of the ic binding pair binds an epitope present on a cell such as a cancer cell, on a solid surface, or a lipid bilayer.
10. An in vitro or ex vivo mammalian cell genetically modified to produce the heterodimeric, conditionally active CAR of any one of the preceding claims, wherein the genetically modified mammalian cell is not a genetically modified human tent cell.
11. The genetically modified mammalian cell of claim 10, wherein the cell is a stem cell, a hematopoietic stem cell (HSC), a progenitor cell, a cell d from a stem cell or from a progenitor cell, a T lymphocyte, or a NK cell.
12. One or more nucleic acids comprising a nucleotide sequence(s) encoding the heterodimeric, conditionally active CAR of any one of claims 1 to 9.
13. A nucleic acid comprising nucleotide sequences ng the heterodimeric, ionally active CAR of any one of claims 1 to 9, wherein the nucleic acid is optionally linked to a T lymphocyte-specific promoter or an NK cell-specific promoter.
14. The nucleic acid of claim 12 or claim 13, wherein the nucleic acid is in vitro transcribed RNA or is present in a recombinant expression .
15. A method of making the cally modified mammalian cell of claim 10, the method comprising genetically modifying a mammalian cell in vitro or ex vivo with an expression vector comprising nucleotide sequences encoding the heterodimeric, conditionally active CAR of any one of claims 1 to 9, or genetically modifying a mammalian cell with an RNA comprising nucleotide sequences encoding the heterodimeric, conditionally active CAR of any one of claims 1 to 9.
16. A heterodimeric, conditionally active chimeric antigen receptor (CAR) comprising: a first polypeptide comprising a first member of a dimerization pair, a first transmembrane domain, and an intracellular ing domain; and a second polypeptide sing an antigen-binding domain that comprises a single chain antibody variable region that specifically binds to CD19 or an antigen expressed by an immune cell, a second member of the dimerization pair, and a second transmembrane domain; wherein the first ptide does not se an n-binding domain and the second polypeptide does not comprise an intracellular signaling domain capable of inducing immune activation, wherein a dimerizing agent dimerizes the first and second polypeptides to form the heterodimeric CAR when the first and second polypeptides are expressed by a cell with the dimerizing agent bound between the dimerization pair members of the first and second polypeptides, and wherein activation of the cell by the formed heterodimeric CAR binding CD19 or said antigen is increased as compared to tion of the cell in the absence of the dimerizing agent.
17. The heterodimeric, conditionally active CAR of claim 16, wherein the immune cell is a cell of a cyte lineage.
18. The heterodimeric, conditionally active CAR of claim 17, wherein the lymphocyte lineage is a B cell lineage.
19. A dimeric, conditionally active chimeric antigen receptor (CAR) sing: a first polypeptide comprising a first member of a dimerization pair, a first transmembrane domain, and an intracellular signaling domain; and a second polypeptide comprising an antigen-binding domain that comprises a single chain antibody variable region, a second member of the dimerization pair, and a second transmembrane domain; wherein the single chain antibody variable region specifically binds to an antigen selected from the group consisting of: CD19, CD20, CD38, CD30, Her2/neu, Erb-B2 Receptor Tyrosine Kinase 2 (ERBB2), Cancer Antigen 125 ), Mucin 1 (MUC-1), prostate-specific membrane antigen (PSMA), CD44 surface adhesion molecule, mesothelin, carcinoembryonic antigen (CEA), epidermal growth factor or (EGFR), EGFRvIII, vascular endothelial growth factor receptor-2 (VEGFR2), high molecular weight-melanoma associated antigen (HMW-MAA), Melanoma- Associated Antigen 1 A1), Interleukein 13 or Subunit Alpha 2 (IL-13R- a2), and Ganglioside GD2; and wherein the first polypeptide does not comprise an antigen-binding domain and the second polypeptide does not comprise an intracellular signaling domain capable of inducing immune activation, wherein a dimerizing agent zes the first and second polypeptides to form the heterodimeric CAR when the first and second polypeptides are expressed by a cell with the dimerizing agent bound between the dimerization pair members of the first and second polypeptides, and wherein activation of the cell by the formed heterodimeric CAR binding said antigen is increased as compared to activation of the cell in the absence of the zing agent.
20. The heterodimeric, conditionally active CAR of claim 19, wherein the antigen is CD19 or elin.
21. The heterodimeric, conditionally active CAR of claim 19 or claim 20, wherein the antigen is CD19.
22. The heterodimeric, conditionally active CAR of claim 19 or claim 20, wherein the antigen is mesothelin.
23. The heterodimeric, conditionally active CAR of any one of claims 16 to 22, wherein the intracellular signaling domain is a CD3-zeta intracellular signaling domain or a ZAP-70 intracellular signaling domain.
24. The heterodimeric, conditionally active CAR of any one of claims 16 to 22, wherein the intracellular signaling domain comprises an immunoreceptor tyrosinebased activation motif (ITAM).
25. The heterodimeric, conditionally active CAR of any one of claims 16 to 24, wherein the first polypeptide, the second polypeptide or both comprise an ellular costimulatory polypeptide.
26. The heterodimeric, ionally active CAR of claim 25, wherein the intracellular ulatory polypeptide is selected from the group consisting of: 4-1BB, CD28, ICOS, OX-40, BTLA, CD27, CD30, GITR, and HVEM.
27. The heterodimeric, conditionally active CAR of claim 25, wherein the first polypeptide comprises a first costimulatory polypeptide comprising an amino acid sequence and the second ptide comprises a second costimulatory polypeptide sing an amino acid sequence that has at least 95% amino acid identity to the amino acid ce of the first costimulatory polypeptide in the first polypeptide.
28. The heterodimeric, conditionally active CAR of any one of claims 16 to 27, wherein the dimerizing agent is selected from the group consisting of: rapamycin, coumermycin, methotrexate, AP20187, ic acid, gibberellin and analogs thereof.
29. The heterodimeric, conditionally active CAR of any one of claims 16 to 28, wherein the first and second members of the dimerization pair are selected from the group consisting of: a) FK506 binding n (FKBP) and apamycin associated protein (FRB); b) a Gibberellic Acid Insensitive (GAI) protein and a gibberellin receptor (GID1) protein; c) FKBP and calcineurin catalytic subunit A (CnA); d) an abscisic acid receptor (PYL) protein and an abscissic acid insensitive (ABI) protein; and e) FKBP and cyclophilin.
30. The heterodimeric, conditionally active CAR of any one of claims 16 to 28, wherein the first and second s of the dimerization pair are selected from the group consisting of: a) FK506 binding protein (FKBP) and FKBP; b) gyrase B (GyrB) and GyrB; c) dihydrofolate reductase (DHFR) and DHFR; and d) DmrB and DmrB.
31. One or more nucleic acids sing a nucleotide sequence(s) encoding the heterodimeric, conditionally active CAR of any one of claims 16 to 30.
32. A nucleic acid of claim 31, wherein the nucleic acid is optionally linked to a T lymphocyte-specific promoter or an NK cell-specific promoter.
33. The one or more nucleic acids of claim 31, wherein at least one of the one or more c acids is in vitro transcribed RNA or is present in a recombinant expression vector.
34. An isolated cell comprising the one or more nucleic acids of any one of claims 31 to 33, wherein the isolated cell is not a tent human cell.
35. The isolated cell of claim 34, n the isolated cell is an isolated immune cell.
36. The isolated cell of claim 35, wherein the isolated immune cell is a cyte or a NK cell.
37. The isolated cell of any one of claims 34 to 36, wherein the isolated cell is a human cell.
38. A pharmaceutical composition comprising the one or more nucleic acids of any one of claims 12 to 14, and 31 to 33; and/or the genetically modified mammalian cell of any one of claims 10, 11, and 34 to 37.
39. The pharmaceutical composition of claim 38, further comprising the dimerizing agent.
40. A kit comprising: (i) the heterodimeric, ionally active CAR of any of claims 1 to 9 and 16 to 30; the one or more nucleic acids of any one of claims 12 to 14, and 31 to 33; and/or the genetically modified ian cell of any one of claims 10, 11, and 34 to 37; or (ii) a dimerizing agent selected from the group consisting of: rapamycin, coumermycin, methotrexate, AP20187, abscisic acid, gibberellin and analogs thereof, and (i).
41. A method of making the isolated cell of any one of claims 34 to 37, the method comprising genetically modifying a mammalian cell in vitro or ex vivo with the one or more nucleic acids of claim 31 to 33.
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|---|---|---|---|
| NZ750521A NZ750521B2 (en) | 2013-02-15 | 2014-02-14 | Chimeric antigen receptor and methods of use thereof |
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| Application Number | Priority Date | Filing Date | Title |
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| US201361765585P | 2013-02-15 | 2013-02-15 | |
| US61/765,585 | 2013-02-15 | ||
| PCT/US2014/016527 WO2014127261A1 (en) | 2013-02-15 | 2014-02-14 | Chimeric antigen receptor and methods of use thereof |
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| NZ710925B2 true NZ710925B2 (en) | 2021-06-29 |
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