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NO20076430L - 4c - Google Patents

4c

Info

Publication number
NO20076430L
NO20076430L NO20076430A NO20076430A NO20076430L NO 20076430 L NO20076430 L NO 20076430L NO 20076430 A NO20076430 A NO 20076430A NO 20076430 A NO20076430 A NO 20076430A NO 20076430 L NO20076430 L NO 20076430L
Authority
NO
Norway
Prior art keywords
sequences
dna
nucleotide
nucleotide sequences
interest
Prior art date
Application number
NO20076430A
Other languages
English (en)
Inventor
Frank Grosveld
Wouter De Laat
Original Assignee
Univ Erasmus Medical Ct
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Priority claimed from GBGB0513676.7A external-priority patent/GB0513676D0/en
Priority claimed from GBGB0605449.8A external-priority patent/GB0605449D0/en
Application filed by Univ Erasmus Medical Ct filed Critical Univ Erasmus Medical Ct
Publication of NO20076430L publication Critical patent/NO20076430L/no

Links

Classifications

    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6809—Methods for determination or identification of nucleic acids involving differential detection
    • A—HUMAN NECESSITIES
    • A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61P—SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P43/00—Drugs for specific purposes, not provided for in groups A61P1/00-A61P41/00
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6813—Hybridisation assays
    • C12Q1/6834—Enzymatic or biochemical coupling of nucleic acids to a solid phase
    • C12Q1/6837—Enzymatic or biochemical coupling of nucleic acids to a solid phase using probe arrays or probe chips
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q2521/00—Reaction characterised by the enzymatic activity
    • C12Q2521/50—Other enzymatic activities
    • C12Q2521/501—Ligase
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q2523/00—Reactions characterised by treatment of reaction samples
    • C12Q2523/10—Characterised by chemical treatment
    • C12Q2523/101—Crosslinking agents, e.g. psoralen
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q2565/00—Nucleic acid analysis characterised by mode or means of detection
    • C12Q2565/50—Detection characterised by immobilisation to a surface
    • C12Q2565/501—Detection characterised by immobilisation to a surface being an array of oligonucleotides

Landscapes

  • Chemical & Material Sciences (AREA)
  • Organic Chemistry (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Health & Medical Sciences (AREA)
  • Engineering & Computer Science (AREA)
  • Wood Science & Technology (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Zoology (AREA)
  • Analytical Chemistry (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • General Health & Medical Sciences (AREA)
  • General Engineering & Computer Science (AREA)
  • Biochemistry (AREA)
  • Molecular Biology (AREA)
  • Microbiology (AREA)
  • Physics & Mathematics (AREA)
  • Immunology (AREA)
  • Biophysics (AREA)
  • Genetics & Genomics (AREA)
  • Biotechnology (AREA)
  • Nuclear Medicine, Radiotherapy & Molecular Imaging (AREA)
  • Veterinary Medicine (AREA)
  • Public Health (AREA)
  • Animal Behavior & Ethology (AREA)
  • Pharmacology & Pharmacy (AREA)
  • Medicinal Chemistry (AREA)
  • General Chemical & Material Sciences (AREA)
  • Chemical Kinetics & Catalysis (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
  • Medicines That Contain Protein Lipid Enzymes And Other Medicines (AREA)
  • Apparatus Associated With Microorganisms And Enzymes (AREA)

Abstract

Det beskrives i et aspekt en fremgangsmåte for å analysere interaksjonsfrekvensen av en målnukleotidsekvens med en eller flere aktuelle sekvenser (for eksempel ett eller flere genomiske loci) omfatte nde trinnene (a) å tilveiebringe en prøve av kryssbundet DNA; (b) oppkutte det kryssbundne DNA med et primært restriksjonsenzym; (c) ligere de kryssbundne nukleotidsekvenser; (d) reversere kryssbindingen; (e) oppkutte nukleotidsekvensene med et sekundært restriksjonsenzym; (@ ligere en eller flere DNAsekvenser av kjent nukleotidsammensetning til de(t) tilgjengelige sekundære restrik- sjonsenzym oppkuttingssete(er) som flankerer den ene eller de flere nukleotidsekvenser av interesse; (g) mangfoldiggjøre den ene eller de flere nukleotidsekvenser av interesse ved anvendelse av minst to oligonukleotidprimere, hvor hver primer hybridiserer til DNA-sekvensene som flankerer nukleotidsekvensene av interesse- (h) hybridisere de(n) mangfoldiggjorte sekvens(er) til et array og bestemme interaksjons- frekvensen mellom DNA-sekvensene og (i) bestemme interaksjonsfrekvensen mellom DNA-sekvensene.
NO20076430A 2005-07-04 2007-12-13 4c NO20076430L (no)

Applications Claiming Priority (3)

Application Number Priority Date Filing Date Title
GBGB0513676.7A GB0513676D0 (en) 2005-07-04 2005-07-04 4c
GBGB0605449.8A GB0605449D0 (en) 2006-03-17 2006-03-17 4c
PCT/IB2006/002268 WO2007004057A2 (en) 2005-07-04 2006-07-03 Chromosome conformation capture-on-chip (4c) assay

Publications (1)

Publication Number Publication Date
NO20076430L true NO20076430L (no) 2008-04-03

Family

ID=37604842

Family Applications (1)

Application Number Title Priority Date Filing Date
NO20076430A NO20076430L (no) 2005-07-04 2007-12-13 4c

Country Status (18)

Country Link
US (2) US20070231817A1 (no)
EP (1) EP1899488B1 (no)
JP (1) JP5416405B2 (no)
KR (1) KR101383593B1 (no)
AU (1) AU2006264564B2 (no)
BR (1) BRPI0611702B1 (no)
CA (1) CA2614118C (no)
CY (1) CY1117260T1 (no)
DK (1) DK1899488T3 (no)
ES (1) ES2556113T3 (no)
HU (1) HUE026922T2 (no)
IL (1) IL187919A (no)
NO (1) NO20076430L (no)
NZ (1) NZ564262A (no)
PL (1) PL1899488T3 (no)
RU (1) RU2478716C2 (no)
SI (1) SI1899488T1 (no)
WO (1) WO2007004057A2 (no)

Families Citing this family (30)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
GB0603251D0 (en) 2006-02-17 2006-03-29 Isis Innovation DNA conformation
US8071296B2 (en) 2006-03-13 2011-12-06 Agency For Science, Technology And Research Nucleic acid interaction analysis
WO2008084405A2 (en) * 2007-01-11 2008-07-17 Erasmus University Medical Center Circular chromosome conformation capture (4c)
US8263367B2 (en) * 2008-01-25 2012-09-11 Agency For Science, Technology And Research Nucleic acid interaction analysis
WO2010036323A1 (en) 2008-09-25 2010-04-01 University Of Massachusetts Medical School Method of identifing interactions between genomic loci
NO2591125T3 (no) * 2010-07-09 2018-09-01
US9411930B2 (en) 2013-02-01 2016-08-09 The Regents Of The University Of California Methods for genome assembly and haplotype phasing
CA2899020C (en) 2013-02-01 2023-10-03 The Regents Of The University Of California Methods for genome assembly and haplotype phasing
GB2517936B (en) * 2013-09-05 2016-10-19 Babraham Inst Chromosome conformation capture method including selection and enrichment steps
GB201320351D0 (en) 2013-11-18 2014-01-01 Erasmus Universiteit Medisch Ct Method
GB2520763A (en) * 2013-12-02 2015-06-03 Vanadis Diagnostics Ab Nucleic acid probe and method of detecting genomic fragments
GB2520765A (en) 2013-12-02 2015-06-03 Vanadis Diagnostics Ab Multiplex detection of nucleic acids
EP3080605B1 (en) 2013-12-11 2019-02-20 The Regents of the University of California Method for labeling dna fragments to reconstruct physical linkage and phase
CA2956925C (en) 2014-08-01 2024-02-13 Dovetail Genomics, Llc Tagging nucleic acids for sequence assembly
EP3031929A1 (en) * 2014-12-11 2016-06-15 Mdc Max-Delbrück-Centrum Für Molekulare Medizin Berlin - Buch Genome architecture mapping
SG10202000731WA (en) 2015-02-17 2020-03-30 Dovetail Genomics Llc Nucleic acid sequence assembly
US11807896B2 (en) 2015-03-26 2023-11-07 Dovetail Genomics, Llc Physical linkage preservation in DNA storage
MY194686A (en) 2015-06-24 2022-12-15 Oxford BioDynamics PLC Detection of chromosome interactions
JP7300831B2 (ja) 2015-10-19 2023-06-30 ダブテイル ゲノミクス エルエルシー ゲノムアセンブリ、ハプロタイプフェージング、および標的に依存しない核酸検出のための方法
WO2017066907A1 (zh) * 2015-10-19 2017-04-27 安诺优达基因科技(北京)有限公司 一种构建高可利用数据率的Hi-C文库的方法
CN109072298B (zh) 2016-02-23 2022-04-08 多弗泰尔基因组学有限责任公司 用于基因组组装和单倍体型定相的定相读取集的生成
GB201608000D0 (en) 2016-05-06 2016-06-22 Oxford Biodynamics Ltd Chromosome detection
EP3954771B1 (en) 2016-05-13 2025-09-03 Dovetail Genomics, LLC Recovering long-range linkage information from preserved samples
WO2018100381A1 (en) 2016-12-01 2018-06-07 Oxford Biodynamics Limited Application of epigenetic chromsomal interactions in cancer diagnostics
KR20190117495A (ko) * 2016-12-23 2019-10-16 옥스포드 바이오다이나믹스 리미티드 타이핑 방법
EP3692168A1 (en) * 2017-10-02 2020-08-12 Oxford Biodynamics Limited Biomarker
WO2019152543A1 (en) 2018-01-31 2019-08-08 Dovetail Genomics, Llc Sample prep for dna linkage recovery
USD877547S1 (en) 2018-07-09 2020-03-10 Apple Inc. Retail fixture
GB202111195D0 (en) 2021-08-03 2021-09-15 Cergentis B V Method for targeted sequencing
GB202111194D0 (en) 2021-08-03 2021-09-15 Cergentis B V Method

Family Cites Families (2)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
WO2003076949A2 (en) * 2002-03-08 2003-09-18 The Babraham Institute Tagging and recovery of elements associated with target molecules
WO2008084405A2 (en) * 2007-01-11 2008-07-17 Erasmus University Medical Center Circular chromosome conformation capture (4c)

Also Published As

Publication number Publication date
EP1899488A2 (en) 2008-03-19
WO2007004057A3 (en) 2007-05-18
AU2006264564B2 (en) 2012-04-19
IL187919A (en) 2012-10-31
AU2006264564A1 (en) 2007-01-11
US20070231817A1 (en) 2007-10-04
RU2008104024A (ru) 2009-08-10
IL187919A0 (en) 2008-03-20
EP1899488B1 (en) 2015-09-16
DK1899488T3 (en) 2015-12-21
ES2556113T3 (es) 2016-01-13
BRPI0611702B1 (pt) 2015-05-19
CA2614118C (en) 2013-11-26
WO2007004057A2 (en) 2007-01-11
HUE026922T2 (en) 2016-07-28
PL1899488T3 (pl) 2016-03-31
BRPI0611702A2 (pt) 2010-09-28
NZ564262A (en) 2010-02-26
JP2009500031A (ja) 2009-01-08
KR20080016953A (ko) 2008-02-22
SI1899488T1 (sl) 2016-05-31
CA2614118A1 (en) 2007-01-11
US20100075861A1 (en) 2010-03-25
US8153373B2 (en) 2012-04-10
RU2478716C2 (ru) 2013-04-10
CY1117260T1 (el) 2017-04-26
KR101383593B1 (ko) 2014-04-09
JP5416405B2 (ja) 2014-02-12

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