[go: up one dir, main page]

MX2019004123A - Metodo y sistema para almacenar y acceder a datos de bioinformatica. - Google Patents

Metodo y sistema para almacenar y acceder a datos de bioinformatica.

Info

Publication number
MX2019004123A
MX2019004123A MX2019004123A MX2019004123A MX2019004123A MX 2019004123 A MX2019004123 A MX 2019004123A MX 2019004123 A MX2019004123 A MX 2019004123A MX 2019004123 A MX2019004123 A MX 2019004123A MX 2019004123 A MX2019004123 A MX 2019004123A
Authority
MX
Mexico
Prior art keywords
storing
accessing
data
bioinformatics data
genomic
Prior art date
Application number
MX2019004123A
Other languages
English (en)
Inventor
Zoia Giorgio
Renzi Daniele
Original Assignee
Genomsys Sa
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Genomsys Sa filed Critical Genomsys Sa
Publication of MX2019004123A publication Critical patent/MX2019004123A/es

Links

Classifications

    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B50/00—ICT programming tools or database systems specially adapted for bioinformatics
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B50/00—ICT programming tools or database systems specially adapted for bioinformatics
    • G16B50/30—Data warehousing; Computing architectures
    • G—PHYSICS
    • G06—COMPUTING OR CALCULATING; COUNTING
    • G06F—ELECTRIC DIGITAL DATA PROCESSING
    • G06F17/00—Digital computing or data processing equipment or methods, specially adapted for specific functions
    • G06F17/10—Complex mathematical operations
    • G06F17/16—Matrix or vector computation, e.g. matrix-matrix or matrix-vector multiplication, matrix factorization
    • G—PHYSICS
    • G06—COMPUTING OR CALCULATING; COUNTING
    • G06F—ELECTRIC DIGITAL DATA PROCESSING
    • G06F17/00—Digital computing or data processing equipment or methods, specially adapted for specific functions
    • G06F17/10—Complex mathematical operations
    • G06F17/18—Complex mathematical operations for evaluating statistical data, e.g. average values, frequency distributions, probability functions, regression analysis
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B30/00—ICT specially adapted for sequence analysis involving nucleotides or amino acids
    • G16B30/10—Sequence alignment; Homology search
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B40/00—ICT specially adapted for biostatistics; ICT specially adapted for bioinformatics-related machine learning or data mining, e.g. knowledge discovery or pattern finding
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B40/00—ICT specially adapted for biostatistics; ICT specially adapted for bioinformatics-related machine learning or data mining, e.g. knowledge discovery or pattern finding
    • G16B40/10—Signal processing, e.g. from mass spectrometry [MS] or from PCR
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B50/00—ICT programming tools or database systems specially adapted for bioinformatics
    • G16B50/20—Heterogeneous data integration
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6869—Methods for sequencing
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B30/00—ICT specially adapted for sequence analysis involving nucleotides or amino acids

Landscapes

  • Engineering & Computer Science (AREA)
  • Physics & Mathematics (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Health & Medical Sciences (AREA)
  • Theoretical Computer Science (AREA)
  • Medical Informatics (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Spectroscopy & Molecular Physics (AREA)
  • Bioinformatics & Computational Biology (AREA)
  • Evolutionary Biology (AREA)
  • Biophysics (AREA)
  • General Health & Medical Sciences (AREA)
  • Biotechnology (AREA)
  • Databases & Information Systems (AREA)
  • Data Mining & Analysis (AREA)
  • General Physics & Mathematics (AREA)
  • Bioethics (AREA)
  • Mathematical Physics (AREA)
  • Mathematical Analysis (AREA)
  • Pure & Applied Mathematics (AREA)
  • Computational Mathematics (AREA)
  • Mathematical Optimization (AREA)
  • Software Systems (AREA)
  • Chemical & Material Sciences (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Analytical Chemistry (AREA)
  • General Engineering & Computer Science (AREA)
  • Epidemiology (AREA)
  • Algebra (AREA)
  • Artificial Intelligence (AREA)
  • Computer Vision & Pattern Recognition (AREA)
  • Evolutionary Computation (AREA)
  • Public Health (AREA)
  • Molecular Biology (AREA)
  • Organic Chemistry (AREA)
  • Operations Research (AREA)
  • Computing Systems (AREA)
  • Signal Processing (AREA)
  • Probability & Statistics with Applications (AREA)
  • Wood Science & Technology (AREA)

Abstract

Método y sistema para almacenar y acceder a datos genómicos. Los datos de secuenciación genómica se dividen en unidades de acceso de diferentes tipos según la previsibilidad de los datos contenidos. Las unidades de acceso se clasifican en diferentes tipos y la estructuración permite el acceso selectivo y el procesamiento selectivo de datos genómicos.
MX2019004123A 2016-10-11 2016-10-11 Metodo y sistema para almacenar y acceder a datos de bioinformatica. MX2019004123A (es)

Applications Claiming Priority (1)

Application Number Priority Date Filing Date Title
PCT/EP2016/074301 WO2018068828A1 (en) 2016-10-11 2016-10-11 Method and system for storing and accessing bioinformatics data

Publications (1)

Publication Number Publication Date
MX2019004123A true MX2019004123A (es) 2019-06-10

Family

ID=57241049

Family Applications (1)

Application Number Title Priority Date Filing Date
MX2019004123A MX2019004123A (es) 2016-10-11 2016-10-11 Metodo y sistema para almacenar y acceder a datos de bioinformatica.

Country Status (16)

Country Link
US (1) US11386979B2 (es)
EP (1) EP3526710A1 (es)
JP (1) JP7092757B2 (es)
KR (1) KR102825625B1 (es)
CN (1) CN110168652B (es)
AU (1) AU2016426570A1 (es)
BR (1) BR112019007307A2 (es)
CA (1) CA3039689A1 (es)
CL (1) CL2019000956A1 (es)
CO (1) CO2019003599A2 (es)
EA (1) EA037106B1 (es)
IL (1) IL265909B2 (es)
MX (1) MX2019004123A (es)
PH (1) PH12019500794A1 (es)
SG (1) SG11201903180RA (es)
WO (1) WO2018068828A1 (es)

Families Citing this family (7)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
CA3039689A1 (en) 2016-10-11 2018-04-19 Genomsys Sa Method and system for storing and accessing bioinformatics data
US12210904B2 (en) * 2018-06-29 2025-01-28 International Business Machines Corporation Hybridized storage optimization for genomic workloads
WO2021074440A1 (en) * 2019-10-18 2021-04-22 Koninklijke Philips N.V. System and method for effective compression, representation and decompression of diverse tabulated data
CN111028883B (zh) * 2019-11-20 2023-07-18 广州达美智能科技有限公司 基于布尔代数的基因处理方法、装置及可读存储介质
EP3896698A1 (en) 2020-04-15 2021-10-20 Genomsys SA Method and system for the efficient data compression in mpeg-g
WO2022073810A1 (en) * 2020-10-06 2022-04-14 Koninklijke Philips N.V. Methods and systems for storing genomic data in a file structure comprising protection metadata
KR102418617B1 (ko) * 2020-10-13 2022-07-07 서울대학교산학협력단 염기 비율과 연속적 발생을 제한하는 dna 저장 부호화 방법, 프로그램 및 장치

Family Cites Families (16)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
JP2003188735A (ja) 2001-12-13 2003-07-04 Ntt Data Corp データ圧縮装置及び方法並びにプログラム
US20040153255A1 (en) 2003-02-03 2004-08-05 Ahn Tae-Jin Apparatus and method for encoding DNA sequence, and computer readable medium
WO2006052242A1 (en) * 2004-11-08 2006-05-18 Seirad, Inc. Methods and systems for compressing and comparing genomic data
JP4852313B2 (ja) 2006-01-20 2012-01-11 富士通株式会社 ゲノム解析プログラム、該プログラムを記録した記録媒体、ゲノム解析装置およびゲノム解析方法
CN102084380A (zh) * 2007-08-02 2011-06-01 何塞·丹尼尔·洛皮斯·洛皮斯 仿真染色体“dna”结构链的电子系统
KR101969848B1 (ko) * 2011-06-10 2019-04-17 삼성전자주식회사 유전자 데이터를 압축하는 방법 및 장치
KR101638594B1 (ko) * 2010-05-26 2016-07-20 삼성전자주식회사 Ｄｎａ 서열 검색 방법 및 장치
US9177099B2 (en) * 2010-08-31 2015-11-03 Annai Systems Inc. Method and systems for processing polymeric sequence data and related information
KR101253700B1 (ko) * 2010-11-26 2013-04-12 가천대학교 산학협력단 Ｎｇｓ 데이터의 고속 압축장치 및 그 방법
US20130246460A1 (en) * 2011-03-09 2013-09-19 Annai Systems, Inc. System and method for facilitating network-based transactions involving sequence data
US9449191B2 (en) * 2011-11-03 2016-09-20 Genformatic, Llc. Device, system and method for securing and comparing genomic data
KR101922129B1 (ko) * 2011-12-05 2018-11-26 삼성전자주식회사 차세대 시퀀싱을 이용하여 획득된 유전 정보를 압축 및 압축해제하는 방법 및 장치
KR101949569B1 (ko) * 2011-12-08 2019-02-18 파이브3 제노믹스, 엘엘씨 게놈 데이터의 동적 인덱싱 및 시각화를 제공하는 분산 시스템
US9734284B2 (en) * 2013-03-15 2017-08-15 Micron Technology, Inc. Hardware acceleration of short read mapping for genomic and other types of analyses
US10902937B2 (en) 2014-02-12 2021-01-26 International Business Machines Corporation Lossless compression of DNA sequences
CA3039689A1 (en) 2016-10-11 2018-04-19 Genomsys Sa Method and system for storing and accessing bioinformatics data

Also Published As

Publication number Publication date
EP3526710A1 (en) 2019-08-21
KR102825625B1 (ko) 2025-06-25
JP7092757B2 (ja) 2022-06-28
EA201990920A1 (ru) 2019-07-31
AU2016426570A1 (en) 2019-06-06
PH12019500794A1 (en) 2019-12-02
JP2019537781A (ja) 2019-12-26
IL265909B1 (en) 2024-03-01
CO2019003599A2 (es) 2019-08-30
KR20190073428A (ko) 2019-06-26
CA3039689A1 (en) 2018-04-19
WO2018068828A1 (en) 2018-04-19
AU2016426570A9 (en) 2019-10-03
CN110168652B (zh) 2023-11-21
IL265909A (en) 2019-06-30
WO2018068828A9 (en) 2019-09-12
US11386979B2 (en) 2022-07-12
CL2019000956A1 (es) 2019-08-23
EA037106B1 (ru) 2021-02-05
US20200058378A1 (en) 2020-02-20
CN110168652A (zh) 2019-08-23
BR112019007307A2 (pt) 2019-09-17
IL265909B2 (en) 2024-07-01
SG11201903180RA (en) 2019-05-30

Similar Documents

Publication Publication Date Title
PH12019500794A1 (en) Method and system for storing and accessing bioinformatics data
EP3855312A4 (en) INFORMATION PROCESSING PROCESS, DEVICE, INFORMATION MEDIA, ELECTRONIC DEVICE AND SYSTEM
EP4020328C0 (en) DATA PROCESSING METHOD AND APPARATUS, COMPUTER DEVICE AND STORAGE MEDIUM
EP3886448A4 (en) VIDEO PROCESSING PROCESS AND DEVICE, ELECTRONIC DEVICE AND COMPUTER READABLE MEDIA
IL272927A (en) Systems and methods for leveraging belonging in genomic data analysis
SG11201913408RA (en) Transaction data processing method and device, computer device, and storage medium
EP3588415A4 (en) ACCOUNT PROCESSING METHOD AND DEVICE IN A BLOCKCHAIN, STORAGE MEDIUM AND COMPUTER DEVICE
EP3499996A4 (en) PROCESS, DEVICE AND SYSTEM FOR INFORMATION TRANSMISSION AND COMPUTER STORAGE MEDIA
EP3343503A4 (en) High-precision map data processing method and apparatus, storage medium and device
EP3264248A4 (en) Information processing method, terminal, and computer storage medium
EP3267300A4 (en) Information processing method and terminal, and computer storage medium
EP3273334A4 (en) Information processing method, terminal and computer storage medium
EP3324296A4 (en) File data access method and computer system
EP3848798A4 (en) APPARATUS AND METHOD FOR PROCESSING INFORMATION, DATA MEDIA, AND ELECTRONIC DEVICE
EP3621268A4 (en) DATA PROCESSING PROCESS, SYSTEM, DEVICE, DATA MEDIA AND DEVICE
EP3337219A4 (en) Carrier configuration processing method, device and system, and computer storage medium
EP3309669A4 (en) Input sequence processing method, apparatus, device, and non-volatile computer storage medium
EP3388915A4 (en) Information processing method, mobile device, and computer storage medium
EP3188002A4 (en) Method and apparatus for reading and writing data, storage device and computer system
EP3279816A4 (en) Data analysis processing method, apparatus, computer device, and storage medium
EP3836049C0 (en) DATA PROCESSING SYSTEM AND METHOD, INFORMATION MEDIUM AND COMPUTER PROGRAM PRODUCT
EP4008261A4 (en) Data processing method, apparatus, device, and storage medium
EP3993341A4 (en) Multimedia data processing method and apparatus, storage medium and electronic device
SG11201913925YA (en) Question and answer data processing method and apparatus, computer device, and storage medium
EP3629251A4 (en) NEURONAL NETWORK, COMPUTER SYSTEM, AND STORAGE MEDIA PROCESSING PROCESS