Commits · master · vicweiss / sonicparanoid2 · GitLab

Aug 26, 2019
- fix typos · c9a34107
  Salvatore Cosentino authored Aug 26, 2019
  
  c9a34107
Aug 25, 2019
- Version bump and changelog update · 3db0b214
  Salvatore Cosentino authored Aug 25, 2019
  
  3db0b214
Aug 24, 2019
- close file in create_matrix_from_orthotbl in graph_c.pyx · 907ea0de
  Salvatore Cosentino authored Aug 25, 2019
  
  907ea0de
Aug 07, 2019
- version bump (1.2.5) · 757e355d
  Salvatore Cosentino authored Aug 07, 2019
  
  757e355d
- added info on how to install from PyPI test repository · c50cc81c
  Salvatore Cosentino authored Aug 07, 2019
  
  c50cc81c
- fix formatting · 1976ce9f
  Salvatore Cosentino authored Aug 07, 2019
  
  1976ce9f
- updated changelog for release 1.2.5 · 0e9474ff
  Salvatore Cosentino authored Aug 07, 2019
  
  0e9474ff
- cleanup and version bump · 4950950c
  Salvatore Cosentino authored Aug 07, 2019
  
  4950950c
- minimum memory per thread set to 1.75 GBytes; Logical cores are considered... · 6c5ea22d
  Salvatore Cosentino authored Aug 07, 2019
  6c5ea22d
Jul 15, 2019
- Added badges at the top of readme · aab769f8
  Salvatore Cosentino authored Jul 15, 2019
  
  aab769f8
Jul 14, 2019
- changed minimum python version · 5bef2b46
  Salvatore Cosentino authored Jul 14, 2019
  
  5bef2b46
- removed py-limited-api · 41816cc3
  Salvatore Cosentino authored Jul 14, 2019
  
  41816cc3
- Fixed links using Sphinx formatting · 6d5846f2
  Salvatore Cosentino authored Jul 14, 2019
  
  6d5846f2
- fixed links · 27636c4a
  Salvatore Cosentino authored Jul 14, 2019
  
  27636c4a
- added mypy, and psutil as required packages; version bump · 51c99336
  Salvatore Cosentino authored Jul 14, 2019
  
  51c99336
- Updated with changes for version 1.2.4 · 59fd4de0
  Salvatore Cosentino authored Jul 14, 2019
  
  59fd4de0
- code cleanup · 95dd54f1
  Salvatore Cosentino authored Jul 14, 2019
  
  95dd54f1
Jul 12, 2019
- The number of threads is automatically reduced if higher than the number of physical cores · b15854b2
  Salvatore Cosentino authored Jul 12, 2019
  
  b15854b2
- Added call to gc.collect() every time a given number of ortholog tables is generated · 36893fb3
  Salvatore Cosentino authored Jul 12, 2019
  
  36893fb3
- added function to adjust the number of threads to the maximum available memory · 81c22aba
  Salvatore Cosentino authored Jul 12, 2019
  
  81c22aba
- Improved description of current analysis steps · 1d1b9c8d
  Salvatore Cosentino authored Jul 12, 2019
  
  1d1b9c8d
- improved error output · 199d7633
  Salvatore Cosentino authored Jul 12, 2019
  
  199d7633
Jul 08, 2019
- add mypy package as a requirement · ee3f03a7
  Salvatore Cosentino authored Jul 08, 2019
  
  ee3f03a7
- Print extra info on execution times. · e9dff578
  Salvatore Cosentino authored Jul 08, 2019
  
  e9dff578
- print ERROR on stderr · 8ecf4601
  Salvatore Cosentino authored Jul 08, 2019
  
  8ecf4601
- Remove numpy RuntimeWarning when not in debug. · 498a1f62
  Salvatore Cosentino authored Jul 08, 2019
  
  498a1f62
- Force gc.collect() after the creation of matrixes; Add some extra info on the execution times · de4a3cbd
  Salvatore Cosentino authored Jul 08, 2019
  
  de4a3cbd
- Explicitly remove non-required objects · a5b854fc
  Salvatore Cosentino authored Jul 08, 2019
  
  a5b854fc
- Force gc.collect() after dictionary deletion · 4692b4b7
  Salvatore Cosentino authored Jul 08, 2019
  
  4692b4b7
Jul 02, 2019
- Setup and README files updated · 8057ee0b
  Salvatore Cosentino authored Jul 02, 2019
  
  8057ee0b
Jun 07, 2019
- Fixed bug in which the variable in error message was not printed. (Thanks to Jeff Stein) · 20318480
  Salvatore Cosentino authored Jun 07, 2019
  
  20318480
May 13, 2019
- Added MCL installation and installation check (performed only one time, if required) · 14ed7571
  Salvatore Cosentino authored May 13, 2019
  
  14ed7571
- version bump; imporved MCL installation; updated source link to GitLab · 73b7ad58
  Salvatore Cosentino authored May 13, 2019
  
  73b7ad58
- release 1.2.2; updated source link to GitLab · 5d925c91
  Salvatore Cosentino authored May 13, 2019
  
  5d925c91
- Include only MCL binaries in MANIFEST · b5a22e94
  Salvatore Cosentino authored May 13, 2019
  
  b5a22e94
May 10, 2019
- remove MCL old binaries · 53c1e0da
  Salvatore Cosentino authored May 10, 2019
  
  53c1e0da
- code cleanup · 6aac9d14
  Salvatore Cosentino authored May 10, 2019
  
  6aac9d14
May 09, 2019
- do not compress pnz matrix files · 882e4afb
  Salvatore Cosentino authored May 09, 2019
  
  882e4afb
- fixed link markdown · f9271b99
  Salvatore Cosentino authored May 09, 2019
  
  f9271b99
- added link in changelog · bec93b69
  Salvatore Cosentino authored May 09, 2019
  
  bec93b69