Commits · master · licheng0921 / sonicparanoid2

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Sep 24, 2021
- update Conda install instructions · 2887932e
  Salvatore Cosentino authored Sep 24, 2021
  
  2887932e
Sep 22, 2021
- minor updates to HTML page · ef9c88f1
  Salvatore Cosentino authored Sep 22, 2021
  
  ef9c88f1
Sep 17, 2021
- fixed date · d93141e6
  Salvatore Cosentino authored Sep 17, 2021
  
  View commits for tag v1.3.6 v1.3.6
  
  d93141e6
- updated webpage archive · 4014a9d9
  Salvatore Cosentino authored Sep 17, 2021
  
  4014a9d9
- updated extime tables and CONDA installation · eb51a123
  Salvatore Cosentino authored Sep 17, 2021
  
  eb51a123
- updated tables with execution times and removed MacIs installation · 0025f340
  Salvatore Cosentino authored Sep 17, 2021
  
  0025f340
- sorted entries · ee964d49
  Salvatore Cosentino authored Sep 17, 2021
  
  ee964d49
Sep 16, 2021
- minor changes · d02d2654
  Salvatore Cosentino authored Sep 16, 2021
  
  d02d2654
- minor updates · a38c01d4
  Salvatore Cosentino authored Sep 16, 2021
  
  a38c01d4
Sep 07, 2021
- minor updates to HTML page and ex time tables · 9d091bfa
  Salvatore Cosentino authored Sep 07, 2021
  
  9d091bfa
Sep 04, 2021
- simplified function to extract ortholog pairs · a49ebc0b
  Salvatore Cosentino authored Sep 04, 2021
  
  a49ebc0b
Sep 03, 2021
- print execution time for pairs file creation · 6001105b
  Salvatore Cosentino authored Sep 03, 2021
  
  6001105b
- minor changes to HTML page · d81c7e48
  Salvatore Cosentino authored Sep 03, 2021
  
  d81c7e48
- exclude MCL source files · dcc938df
  Salvatore Cosentino authored Sep 03, 2021
  
  dcc938df
- exclude quick-multiparanoid source files from package · 095a911b
  Salvatore Cosentino authored Sep 03, 2021
  
  095a911b
- delete old test files for OGs · 0f222b15
  Salvatore Cosentino authored Sep 03, 2021
  
  0f222b15
- Delete MacOS specific binaries from package · 7bc0b776
  Salvatore Cosentino authored Sep 03, 2021
  
  7bc0b776
- set conRun run parameter in MCL inference call · d8058adf
  Salvatore Cosentino authored Sep 03, 2021
  
  d8058adf
- added extra debug lines · c3301704
  Salvatore Cosentino authored Sep 03, 2021
  
  c3301704
- add DEBUG lines · 855dea0e
  Salvatore Cosentino authored Sep 03, 2021
  
  855dea0e
- fixed single-linkage related error · 3be9ae5a
  Salvatore Cosentino authored Sep 03, 2021
  
  3be9ae5a
- update MCL binary path detection · ce7d7408
  Salvatore Cosentino authored Sep 03, 2021
  
  ce7d7408
Sep 02, 2021
- added functions to identify CONDA environment · 7cbe4dca
  Salvatore Cosentino authored Sep 02, 2021
  
  7cbe4dca
- Removed GCC check in main script · f2ec7173
  Salvatore Cosentino authored Sep 02, 2021
  
  f2ec7173
Sep 01, 2021
- exclude quick_multiparanoid files · 6af30d9d
  Salvatore Cosentino authored Sep 01, 2021
  
  6af30d9d
- updated README for bin directory · a2cac9bd
  Salvatore Cosentino authored Sep 01, 2021
  
  a2cac9bd
Aug 31, 2021
- minor changes · c9a44e75
  Salvatore Cosentino authored Aug 31, 2021
  
  c9a44e75
- removed colored output · bb7e8b53
  Salvatore Cosentino authored Aug 31, 2021
  
  bb7e8b53
- removed import · a351b830
  Salvatore Cosentino authored Aug 31, 2021
  
  a351b830
- removed legacy parser script · 18314387
  Salvatore Cosentino authored Aug 31, 2021
  
  18314387
- deleted legacy test files · c50192d3
  Salvatore Cosentino authored Aug 31, 2021
  
  c50192d3
- Removed legacy code · 4da0c091
  Salvatore Cosentino authored Aug 31, 2021
  
  4da0c091
- Removed legacy test scripts · 16c891b3
  Salvatore Cosentino authored Aug 31, 2021
  
  16c891b3
Aug 30, 2021
- updated archive with adaboost prediction model · 95a4e4a3
  Salvatore Cosentino authored Aug 30, 2021
  
  95a4e4a3
Aug 24, 2021
- Revove FAKE inverted predictions · bba5f78e
  Salvatore Cosentino authored Aug 24, 2021
  
  bba5f78e
Aug 21, 2021
- Set overlaps to 20 for intra- and interproteome alignments · 11b0cb25
  Salvatore Cosentino authored Aug 21, 2021
  
  11b0cb25
- Inverted predictions for testing · 4a2569a0
  Salvatore Cosentino authored Aug 21, 2021
  
  4a2569a0
- removed legacy code · f4301c17
  Salvatore Cosentino authored Aug 21, 2021
  
  f4301c17
Aug 20, 2021
- Removed some debug lines · b7f431f4
  Salvatore Cosentino authored Aug 20, 2021
  
  b7f431f4
- refined debug info · 489a600c
  Salvatore Cosentino authored Aug 20, 2021
  
  489a600c