Commits · v1.3.5 · licheng0921 / sonicparanoid2

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Dec 17, 2020
- Updated package content · 7fc0bebe
  Salvatore Cosentino authored Dec 17, 2020
  
  View commits for tag v1.3.5 v1.3.5
  
  7fc0bebe
Dec 11, 2020
- version bump · 5a43b5e3
  Salvatore Cosentino authored Dec 11, 2020
  
  5a43b5e3
- include example files · 88567f56
  Salvatore Cosentino authored Dec 11, 2020
  
  88567f56
- version bump · 8474412b
  Salvatore Cosentino authored Dec 11, 2020
  
  8474412b
- minor changes · 52d04642
  Salvatore Cosentino authored Dec 11, 2020
  
  52d04642
- Removed homebrew as depency · 3131f656
  Salvatore Cosentino authored Dec 11, 2020
  
  3131f656
Dec 10, 2020
- describe changes to the web-page · a9e598a5
  Salvatore Cosentino authored Dec 10, 2020
  
  a9e598a5
- Updated HTML page · 2730aa7c
  Salvatore Cosentino authored Dec 10, 2020
  
  2730aa7c
- renamed script to extract benchmark orthologs ids · 9e878d3a
  Salvatore Cosentino authored Dec 10, 2020
  
  9e878d3a
- Added ability extract QfO 2020 IDs · 6f4b0072
  Salvatore Cosentino authored Dec 10, 2020
  
  6f4b0072
Dec 09, 2020
- version bump · 657161e0
  Salvatore Cosentino authored Dec 09, 2020
  
  657161e0
- minor changes · 2e7b5934
  Salvatore Cosentino authored Dec 09, 2020
  2e7b5934
Dec 01, 2020
- added parameter --no-compress · 9cb9c76e
  Salvatore Cosentino authored Dec 01, 2020
  
  9cb9c76e
Nov 30, 2020
- partially updated the readme · f398a3ff
  Salvatore Cosentino authored Nov 30, 2020
  
  f398a3ff
- added set search type to 1 for MMseqs · f72cafb6
  Salvatore Cosentino authored Nov 30, 2020
  
  f72cafb6
- fixed bug related to capture_output · c34dd1c9
  Salvatore Cosentino authored Nov 30, 2020
  
  c34dd1c9
Sep 07, 2020
- cleanup · 90616cc0
  Salvatore Cosentino authored Sep 07, 2020
  
  90616cc0
- added detailed description for overlap_test_c · f2969c1b
  Salvatore Cosentino authored Sep 07, 2020
  
  f2969c1b
Aug 31, 2020
- cleanup · 56762263
  Salvatore Cosentino authored Aug 31, 2020
  
  56762263
- removed redundant files · e9e356f2
  Salvatore Cosentino authored Aug 31, 2020
  
  e9e356f2
- file compression/extration integrated in the main program · b972fcab
  Salvatore Cosentino authored Aug 31, 2020
  
  b972fcab
- version bump · c0410fe3
  Salvatore Cosentino authored Aug 31, 2020
  
  c0410fe3
- archiving and extracting implemeneted · 1d32bc91
  Salvatore Cosentino authored Aug 31, 2020
  
  1d32bc91
Aug 29, 2020
- added parallel gzip file compression · 146ad6d4
  Salvatore Cosentino authored Aug 29, 2020
  
  146ad6d4
- added function to decompress · a5a4921b
  Salvatore Cosentino authored Aug 29, 2020
  
  a5a4921b
Aug 28, 2020
- added module to compress and unarchive files · 78661312
  Salvatore Cosentino authored Aug 28, 2020
  
  78661312
Aug 27, 2020
- added filetype as dependency · 53bf734f
  Salvatore Cosentino authored Aug 27, 2020
  
  53bf734f
- orthology inference from compressed alignments · 83c98d93
  Salvatore Cosentino authored Aug 27, 2020
  
  83c98d93
- Orthology inference from compressed alignments · 62a92c44
  Salvatore Cosentino authored Aug 27, 2020
  
  62a92c44
- process compressed within-alignments · 04ccf19a
  Salvatore Cosentino authored Aug 27, 2020
  
  04ccf19a
- Minor cleanup · 546cd57f
  Salvatore Cosentino authored Aug 27, 2020
  
  546cd57f
Aug 26, 2020
- cleanup · da1747b2
  Salvatore Cosentino authored Aug 26, 2020
  
  da1747b2
- creation of compressed alignments files completed · c6696f62
  Salvatore Cosentino authored Aug 26, 2020
  
  c6696f62
- code cleanup · 804839d6
  Salvatore Cosentino authored Aug 26, 2020
  
  804839d6
- added compress parametes · bf7cc7d1
  Salvatore Cosentino authored Aug 26, 2020
  bf7cc7d1
- essential stacks generate from compressed complete alignment file · 71b6b554
  Salvatore Cosentino authored Aug 26, 2020
  
  71b6b554
- version bump · 395d141c
  Salvatore Cosentino authored Aug 26, 2020
  
  395d141c
- Generate compressed parsed files · b60a8a1c
  Salvatore Cosentino authored Aug 26, 2020
  
  b60a8a1c
- Generate compressed parsed files · 9771976d
  Salvatore Cosentino authored Aug 26, 2020
  
  9771976d
Aug 25, 2020
- added test file read and write gzip and lz4 archives · 8f961715
  Salvatore Cosentino authored Aug 25, 2020
  
  8f961715