Commits · master · Michael R. Crusoe / CWL

Browse files

Aug 19, 2022
- disabled dockerpull in master branch for now · 2484ec97
  bart authored Aug 19, 2022
  
  2484ec97
Aug 18, 2022
- Merge branch 'master' of gitlab.com:m-unlock/cwl · 37c00123
  Jasper Koehorst authored Aug 18, 2022
  
  37c00123
- version and docker added · faaa8c7f
  Jasper Koehorst authored Aug 18, 2022
  
  faaa8c7f
- make Pilon optional and other fixes · 0270e655
  bart authored Aug 18, 2022
  
  0270e655
Aug 17, 2022
- --tar option seems to break BUSCO · 09cac532
  bart authored Aug 17, 2022
  
  09cac532
- offline mode default false · 64945bf3
  bart authored Aug 17, 2022
  
  64945bf3
Aug 16, 2022
- kraken_database fix · fb8babf3
  bart authored Aug 16, 2022
  
  fb8babf3
- executable · ae15636f
  bart authored Aug 16, 2022
  
  ae15636f
- threads in steps option where missing + kraken_database at quality steps · aaad2b6e
  bart authored Aug 16, 2022
  
  aaad2b6e
- offline/online mode dataset fix · 6563f502
  bart authored Aug 16, 2022
  
  6563f502
- Add README.md · 31d9e080
  bart authored Aug 16, 2022
  
  31d9e080
Aug 15, 2022
- busco offline mode not the default anymore · 63e8aa5f
  bart authored Aug 15, 2022
  
  63e8aa5f
- kraken empty array scatter fix · c9c8e131
  bart authored Aug 15, 2022
  
  c9c8e131
- kraken empty array scatter fix · 07f7c7b7
  bart authored Aug 15, 2022
  
  07f7c7b7
- busco conda version bump · 12545497
  bart authored Aug 15, 2022
  
  12545497
Aug 12, 2022
- typo in metagenomic(s) · fd22305a
  Jasper Koehorst authored Aug 12, 2022
  
  fd22305a
Aug 10, 2022
- Merge branch 'master' of gitlab.com:m-unlock/cwl · 2898059e
  bart authored Aug 10, 2022
  
  2898059e
- sync · 2b422768
  bart authored Aug 10, 2022
  
  2b422768
Aug 09, 2022
- reporting document in progress · a670c42c
  Jasper Koehorst authored Aug 09, 2022
  
  a670c42c
Aug 08, 2022
- outputs · 20687c7b
  bart authored Aug 08, 2022
  
  20687c7b
- add media option · b5a42eed
  bart authored Aug 08, 2022
  
  b5a42eed
Aug 05, 2022
- fixes · 758fdcf2
  bart authored Aug 05, 2022
  
  758fdcf2
- add more description to eukrep stats output · b45e0911
  bart authored Aug 05, 2022
  
  b45e0911
- add multiple assemblers and longread quality workflow · f8f3894e
  bart authored Aug 05, 2022
  
  f8f3894e
- add custom mediadb and gapfill option for carvem · 7f31cb44
  bart authored Aug 05, 2022
  
  7f31cb44
- fix · f560d6e4
  bart authored Aug 05, 2022
  
  f560d6e4
- change venv location · a22bbafd
  bart authored Aug 05, 2022
  
  a22bbafd
- fix · 0b5cfe12
  bart authored Aug 05, 2022
  
  0b5cfe12
Aug 04, 2022
- fixes · c3dc82dd
  bart authored Aug 04, 2022
  
  c3dc82dd
- fixes · ec0eb1c5
  bart authored Aug 04, 2022
  
  ec0eb1c5
- phix filter location · 111c59af
  bart authored Aug 04, 2022
  
  111c59af
- exclusive mode input, wip · a82ce470
  bart authored Aug 04, 2022
  
  a82ce470
Aug 02, 2022
- setup_workflow_metagenomics_assembly.sh · 458849f8
  bart authored Aug 02, 2022
  
  458849f8
Aug 01, 2022
- skip certain binning steps when binning off · 88d32274
  bart authored Aug 01, 2022
  
  88d32274
Jul 29, 2022
- tmp fix for nanopore input string · 3f90cc2d
  bart authored Jul 29, 2022
  
  3f90cc2d
- output folder name fix · 14a37ee9
  bart authored Jul 29, 2022
  
  14a37ee9
- add pilon step, add option to keep the filtered reads in the final output · 0c80acf1
  bart authored Jul 29, 2022
  
  0c80acf1
- corrections and fixes · 2fdf4238
  bart authored Jul 29, 2022
  
  2fdf4238
- make memory option optional · 8728577e
  bart authored Jul 29, 2022
  
  8728577e
- GEM workflow smetana step is optional fix · 11154eb2
  bart authored Jul 29, 2022
  
  11154eb2