Stars
An R package for creating Q-Q and manhattan plots from GWAS results
Rmd source files for the HarvardX series PH525x
A Practical (And Opinionated) Guide To Analyzing 450K Data
C++ API & command-line toolkit for working with BAM data
Analytical framework of whole genome sequencing for genetic studies of human diseases
RSEM: accurate quantification of gene and isoform expression from RNA-Seq data
Course materials for the Data Science Specialization: https://www.coursera.org/specialization/jhudatascience/1
MISO: Mixture of Isoforms model for RNA-Seq isoform quantitation
STAR based ENCODE Long RNA-Seq processing pipeline