Global Biotic Interactions provides access to existing species interaction datasets

Scalable joint species distribution modeling

Multi-species size-based ecological modelling in R

Development version of phaseR, an R package for phase plane analysis of one- and two-dimensional autonomous ODE systems

My personal pipeline to species identification on camera trap pix using deep learning, detection/classification with MegaDetector and RetinaNet

Explicit Interaction Community Models

Simulate data and fit 2-species occupancy model à la Rota et al. (2016) w/ Unmarked

Fit multivariate state-space autoregressive models in Jags

Species interactions of EU List of Concern Species

paper

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Kinetic Monte Carlo simulator for cross-feeding species growth

Shiny app to help identify pairwise species interactions occurrences in literature

Meet nestor, an R package for the variational inference of species interaction networks from abundance data, while accounting for missing actors.

Plant-Frugivore Interactions for South East Asia mined from published literature

Supplement to the paper Queiroz et al. (2020, Biotropica).

A updatet code for the paper Bastazini et al. 2017

Host plant-aphid association data from M.E. Palmer's (1952) "Aphids of the Rocky Mountain Region"

Repository of the article: A synthesis of animal-mediated seed dispersal of palms reveals distinct biogeographic differences in species interactions

Brodie J.E., Helmy O., Mohd-Azlan J., Granados A., Bernard H., Giordano A., and Zipkin E.F. 2018. Models for assessing local-scale co-abundance of animal species while accounting for differential detectability and varied responses to the environment. Biotropica. 50: 5-15.