PhyloDeep is a python library for parameter estimation and model selection from phylogenetic trees, based on deep learning.
-
Updated
Oct 9, 2024 - Python
#
phylodynamics
Here are 16 public repositories matching this topic...
Assessing transmissibility of SARS-CoV-2 lineage B.1.1.7 in England (peer-reviewed)
england
paper
insights
transmission
epidemiology
bayesian-inference
phylodynamics
genetic-data
sarscov2
-
Updated
Mar 30, 2021 - HTML
Code repository for the longitudinal and phylodynamic analysis in "The longitudinal dynamics and natural history of clonal haematopoiesis"
-
Updated
Mar 21, 2022 - R
My PhD Thesis - Institute of Evolutionary Biology, University of Edinburgh, 2018
-
Updated
Mar 6, 2020 - TeX
Nextstrain community build 'Molecular epidemiology of Venezuelan equine encephalitis complex viruses'
bioinformatics
virus
phylogenetics
phylogeography
epidemiology
virology
phylodynamics
venezuelan-equine-encephalitis-virus
-
Updated
Jan 11, 2023
Tracking the spread of Foot-and-Mouth Disease virus in South America
-
Updated
Nov 29, 2022 - Jupyter Notebook
Nextstrain community build 'Molecular epidemiology of Chikungunya virus'
-
Updated
Jan 10, 2023
Example for BEAST v2.5 paper
-
Updated
Feb 15, 2019 - Python
-
Updated
May 9, 2017 - MATLAB
Plague Global Phylogeny Manuscript
-
Updated
Jun 17, 2021 - HTML
-
Updated
Aug 11, 2023 - Python
my second year poster for the Graduate School Poster Day 2016
-
Updated
Nov 3, 2016 - TeX
Genomic epidemiology of novel coronavirus (SARS-CoV-2) in Pakistan
-
Updated
Nov 25, 2022
phylogenetics
population
agent-based-modeling
population-genetics
molecular-evolution
phylodynamics
agent-based-simulation
-
Updated
Sep 14, 2015 - TeX
Improve this page
Add a description, image, and links to the phylodynamics topic page so that developers can more easily learn about it.
Add this topic to your repo
To associate your repository with the phylodynamics topic, visit your repo's landing page and select "manage topics."