This application searches inside a text sequence for words that resemble those inside a list of similar words.

A React component to sketch / search for network motifs.

Finding Network Motifs Using MCMC Sampling

This is a scanner designed to recognise DNA motifs within a long stretch of DNA. It uses two models for discrimination, one model representing the target and the second model representing the background.

Example implementation of "Mueen's Algorithm for Similarity Search" (aka MASS) for ESP32

Gibby is a Python package designed to find the motif of a transcription factor de novo based on ChIP-seq data.

Scans TF binding sites based on motifs.

Deep Unfolded Convolutional Dictionary Learning for motif discovery.

Motif Finding through Gibbs Sampling

Motif Finding using Gibbs Sampler

Intro to Bioinformatics course contents

Coding problems from course 1 of the Bioinformatics specialization

R script for finding and scoring motifs in small genomes using position-frequency tables

Perl script to find sequences on multi fasta files that match a determined protein motif. The motifs are coded as a regular expression RegEx. Originally designed to search for fungal chitin synthase proteins.

Bioinformatics- High-throughput data Analysis project

Automatic Motif Detection wrapper for dotmotif

Workshops, Course Schedule and Teaching Assistant Review from my time as a chosen Undergraduate Teaching Assistant for the University of Pittsburgh course, BIOSC1540 - Computational Genomics taught by Dr. Miler Lee.

Finding motifs in proteins by uniprot accession number