A tool to extract and visualize the results of CAFE (Computational Analysis of gene Family Evolution)
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Updated
Sep 5, 2019 - Python
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gene-families
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showTree can visualize the phylogeny, protein sequences and protein domains of a gene family in one figure.
visualization
python
phylogenetic-trees
phylogenetics
gene-families
treeview
ete3
protein-domains
protein-families
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Updated
Mar 28, 2019 - Python
Workflow for identifying and classifying homologous gene/protein sequences
bioinformatics
python3
biopython
gene-families
genome-annotation
blast
comparative-genomics
molecular-evolution
similarity-search
protein-families
orthology
homology
snakemake-workflow
hmmer3
transcriptome-annotation
coulson-plot
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Updated
Nov 7, 2024 - Python
Pangenome-Analysis.py is written for extraction of core, accessory and unique genomes (Gene families and proteins) along with filtration of single copy orthologues, creation of binary and count matrices as well as removal of duplicates.
bioinformatics
annotation
clustering
biology
gene-families
bioinformatics-analysis
proteome-clustering
downstream-analysis
orthomcl
pangenome
singletons
plasmodium
duplicates-removal
gene-family
binary-matrix
accessory-genes
coregenome
pangenome-inference
pangenome-pipeline
count-matrix
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Updated
Feb 21, 2022 - Python
Analysis of CRISPR-mediated edits in NGS amplicon sequences of multi-copy gene families.
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Updated
Sep 3, 2024 - Python
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