Methods overview with scripts looking at mtDNA and haplogroup association with CPTAC LUAD study.

Sea lion urine comparison with spectral counting.

RNA-Seq Data Analysis in R: From Raw Counts to Differential Expression Analysis

Enhanced volcano plot using edgeR data

Differential expression analysis: DESeq2, edgeR, limma. Realized in python based on rpy2

Personalized, annotated code for anyone working with RNA-seq data.

Snakemake workflow for Bulk RNASeq at both genome level and transcripts level.

Rstudio files created during my internship at IAB. Internship supervised by Florent Chuffart.

Config files for my GitHub profile.

Perform RNA-seq data analysis with edgeR package of bioconductor

RNASeq and Call Variants

A large-scale spectral counting data analysis using PAW pipeline, edgeR, R, and Jupyter notebooks

Some of the analytical processes and tools we use to provide rigorous and actionable results to our clients.

Transcriptome Analysis of Heat and Drought-Stressed Wheat

The Tasmanian devil is endangered due to Devil Facial Tumour Disease (DFTD), a contagious cancer with no current treatment. Previous study has investigated the anticancer properties of Tasmanian devil cathelicidins. This report intends to reproduce the enrichment analysis results of the study and further analyze their data.

RNA sequencing processing and analysis to find differential expression

Various tutorials on how to analyse transcriptomic data.

some scripts to process transcriptomics and Chip-seq data