Revolutionizing DNA analysis and making it accessible to all through innovative ML-powered analysis and interpretive tools.

A method for variant graph genotyping based on exact alignment of k-mers

The first app for Mobile DNA Sequence Alignment and Analysis

Genotype Calling with Uncertainty from Sequencing Data in Polyploids 🍌🍓🥔🍠🥝

A collection of publications on comparison of high-throughput sequencing technologies.

Sentieon DNAseq

Fake genomes, fake sequencing, real insights.

Deployed medical apps on streamlit

Fast C code for identifying and removing primers and adapters

Generalizing deep learning-based variant callers via domain adaptation and semi-supervised learning

The repository contains the source code of the NanoForms server (Czmil et al. NanoForms: an integrated server for processing, analysis and assembly of raw sequencing data of microbial genomes, from Oxford Nanopore technology. PeerJ, 2022). It is meant to be the source for standalone server installation. https://doi.org/10.7717/peerj.13056

Scripts for bioinformatics analysis of sequencing data

A package primarily designed for analysing next generation sequencing DNA data from families with pedigree information in order to identify rare variants that are potentially causal of a disease/trait.

Classify DNA sequence into Binary class using different Classification algorithms.

Data Structures And Algorithms

Tools for encoding files to DNA sequence

Tool for generating artificial fastq files which can be used for testing the fidelity of NGS analysis pipelines.

Package to parse DNA kit files, and import them into Laravel

Implementation of BucketMap, a novel cache-efficient, bit-parallel and alignment-free short read mapping algorithm.

Projects related to Big Data course will be implemented in this repository.