Annotation-agnostic differential expression analysis of RNA-seq data via expressed regions-level or single base-level approaches

R package for the recount2 project. Documentation website: http://leekgroup.github.io/recount/

Explore and download data from the recount3 project

Generate HTML report for a set of genomic regions or DESeq2/edgeR results

BioC2020 workshop: Human RNA-seq data from recount2 and related packages

Public repo for the recount Bioconductor workflow that is visible at http://bioconductor.org/help/workflows/

Supplementary code for the paper: Incomplete annotation has a disproportionate impact on our understanding of Mendelian and complex neurogenetic disorders

Plotting functions for derfinder results

Package for the recount workshop for BioC2017

Optimising the Definitions of Expressed Regions

dbFinder code

Build and access GenomicState objects for use with derfinder tools from sources like Gencode

Example data used by the derfinder and derfinderData Bioconductor packages

Workshop proposal for BioC2019 centered around the recount2 resource

Helper package for derfinder