Lightweight and Fast; RNA-seq quantification at the event-level

AltAnalyze is a multi-functional and easy-to-use software package for automated single-cell and bulk gene and splicing analyses. Easy-to-use precompiled graphical user-interface versions available from our website.

Discover differential transcript usage from polyA-captured single cell RNA-seq data

rnasplice is a bioinformatics pipeline for RNA-seq alternative splicing analysis

BRIE: Bayesian Regression for Isoform Estimate in Single Cells

Interactive R package to quantify, analyse and visualise alternative splicing

Pathway Enrichment-Guided Activity Study of Alternative Splicing (PEGASAS)

ISOform-guided prediction of epiTOPEs in cancer

📓Notebook of Climente-González et al. (2017), The Functional Impact of Alternative Splicing in Cancer.

A network-based approach for exon set enrichment

NGS Tutorial

Vials is a Caleydo Web application for visualizing alternative splicing based on mRNAseq data.

An RNA-Seq data exploration tool that shows read map coverage of a gene of interest along with a coloured "electronic fluorescent pictographic" (eFP) based on its RPKM expression level.

Splicing-aware time-course network enricher - exploratory analysis for transcriptomics and/or proteomics time series data

⚔️Find splicing-led, functional changes of the proteome.

Use Thor's Axe to cut exons into their evolutionary building blocks ⚡

Alternative Splicing ToolKit

Baltica: integrated differential junction usage

Tutorials for using BRIE