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vdj-recombination

Here are 5 public repositories matching this topic...

mehdiborji / nanoranger

simplified cellranger for long-read data

linux bioinformatics python3 bioinformatics-pipeline pacbio computational-science 10x-genomics vdj-recombination tcr-repertoire single-cell-rna-seq minimap2 spatial-transcriptomics sc-rna-seq computational-genomics mixcr cellranger slide-seq tcr-seq nanoranger

Updated Sep 18, 2024
Python

IgGeneUsage

snaketron / IgGeneUsage

Comparison of gene usage in immune repertoires under different biological conditions

immunology high-throughput-sequencing immunoglobulin differential-gene-expression immunoinformatics differential-analysis vdj-recombination tcr-repertoire immune-repertoires immunological-bioinformatics immunogenomics immune-repertoire bcr-repertoire immune-repertoire-analysis b-cell-receptor

Updated Apr 20, 2024
R

CRIS

Rashedul / CRIS

Construction of IHGV sequences from RNA-seq

bioinformatics gene rna-seq genomics sequencing immunoglobulin vdj-recombination cll vdj ihgv-transcripts ighv somatic-hypermutations ighv-status ighv3

Updated Dec 19, 2022
Shell

imminfo / ymir

(Under development) Computational framework for probabilistic models of immune receptor assembling.

bioinformatics immunology t-cell-receptor tcr ig immunoglobulin probabilistic-models immunoinformatics vdj-recombination statistical-immunoinformatics

Updated Aug 6, 2018
C++

swanson-lab / VH12-Sequencing

Code and scripts used for Worth et al. 2022: "Receptor editing constrains development of phosphatidyl choline-specific B cells in VH12-transgenic mice".

r ngs immunology rep-seq ngs-analysis vdj-recombination ngs-pipeline b-cell immcantation transgene b-cell-receptor mus-musculus

Updated May 24, 2022
R

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