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Enhance UI to Better Display Control Vocabulary Attribute Values with IRI References #1991

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whomingbird opened this issue Sep 10, 2024 · 6 comments
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@whomingbird
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The current controlled vocabulary (CV) values associated with ontology terms are displayed as plain text. We would like to enhance these by converting them into hyperlinks, pointing to their respective ontology term URLs. This will improve usability by allowing users to easily access detailed information about the ontology terms.

from Biomedical science (http://edamontology.org/topic_3344) to Biomedical science

@stuzart
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stuzart commented Sep 10, 2024

bear in mind that the ontology identifiers may not always be resolvable URLs, or may just resolve to an OWL xml file. Might be better to make the hyperlinks point to a reference in the OLS

@whomingbird
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Is it currently supported in SEEK to define an iri that points to an OWL XML file or non-resolvable URLs?

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@stuzart
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stuzart commented Sep 11, 2024

Is it currently supported in SEEK to define an iri that points to an OWL XML file or non-resolvable URLs? reference

yes, the iri dependes on the the ontology and what was chosen for the term id iri. An IRI isn't a URL, fred:blogs is a valid IRI, as is chebi:1234 or taxon:1234. So you can't rely on the ontology using resolvable urls.

http://edamontology.org/topic_3344 only resolves becomes somebody has taken the effort to setup a redirect to bioportal, but they didn't have to do so.

@stuzart
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stuzart commented Sep 11, 2024

@stuzart
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stuzart commented Sep 11, 2024

here is an example of a term that resolves to an owl.xml file: https://www.ebi.ac.uk/ols4/ontologies/enm/classes/http%253A%252F%252Fwww.bioassayontology.org%252Fbao%2523BAO_0000015

( http://www.bioassayontology.org/bao#BAO_0000015 )

or a better link to the ontology itself, where all terms to: https://www.ebi.ac.uk/ols4/ontologies/bao

@whomingbird whomingbird changed the title Update CV Terms to Hyperlinked Ontology References for Extended Metadata Enhance UI to Better Display Control Vocabulary Attribute Values with IRI References Sep 13, 2024
@github-project-automation github-project-automation bot moved this from To do to Done in SEEK 1.15.x Sep 23, 2024
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