Create abstraction masks for bioc objects that only unwrap necessary objects

Codes for paper: Evaluating the Utilities of Large Language Models in Single-cell Data Analysis.

Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR

AUCell: score single cells with gene regulatory networks

21 Lessons, Get Started Building with Generative AI 🔗 https://microsoft.github.io/generative-ai-for-beginners/

12 weeks, 26 lessons, 52 quizzes, classic Machine Learning for all

tidy processing of biological sequences in R

scpca-nf is the Nextflow workflow for processing Single-cell Pediatric Cancer Atlas Portal data

One-step to Cluster and Visualize Gene Expression Matrix

Useful functions to make your scRNA-seq plot more cool!

Continuous integration for R packages. 🔀 Automates testing ✅, documentation website building 📦, & containerised deployment 🐳.

Data Analysis with Bootstrap Estimation in R

Light-weight Snakemake workflow for preprocessing and statistical analysis of RNA-seq data

Function-oriented Make-like declarative workflows for R

Data quality assessment and metadata reporting for data frames and database tables

SpatialExperiment with tidy principles

Wings for your R packages: Streamline the process of versioning R packages and updating NEWS

Pre-compiled CmdStan models in R packages

single-cell RNAseq analysis notebooks accompanying Tuong et al.

Tidy R query API for the harmonised and curated CELLxGENE single-cell atlas.

Working with relational data models in R

https://www.sc-best-practices.org

Provide function to calculate the modified Bessel function of the second kind and its derivatives.

Database (DBI) backend for dplyr

R interface to the cellxgene data portal

Bioc2022 brief talk on ontology and ontoProc

BITFAM is a Bayesian approach and platform to infer transcription factor activities within individual cells using single cell RNA-sequencing data. Please see Gao S et al., Genome Research (2021) ht…

Repository containing demonstrations of lab software